Query 042485
Match_columns 332
No_of_seqs 307 out of 2268
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shq_A UBLCP1; phosphatase, hy 100.0 4.8E-78 1.6E-82 571.7 21.7 314 12-326 2-319 (320)
2 3qle_A TIM50P; chaperone, mito 100.0 3.5E-35 1.2E-39 261.3 13.2 158 142-320 29-190 (204)
3 2ght_A Carboxy-terminal domain 100.0 3.2E-33 1.1E-37 244.7 14.7 159 137-315 5-180 (181)
4 2hhl_A CTD small phosphatase-l 100.0 5.6E-30 1.9E-34 226.7 13.9 146 144-309 25-187 (195)
5 3ef0_A RNA polymerase II subun 99.9 1.9E-24 6.6E-29 208.2 13.6 122 145-284 16-172 (372)
6 3ef1_A RNA polymerase II subun 99.9 1.4E-23 4.8E-28 204.9 12.2 138 144-298 23-195 (442)
7 1wgg_A Ubiquitin carboxyl-term 99.8 1.1E-19 3.7E-24 142.7 10.8 83 13-100 5-88 (96)
8 1v5t_A 8430435I17RIK protein; 99.8 2.2E-19 7.6E-24 139.2 8.2 79 14-92 6-85 (90)
9 1v86_A DNA segment, CHR 7, way 99.8 9.7E-19 3.3E-23 136.9 10.5 83 7-93 9-91 (95)
10 2dzm_A FAS-associated factor 1 99.7 6.6E-18 2.3E-22 133.2 8.6 79 12-92 6-84 (100)
11 2bwf_A Ubiquitin-like protein 99.7 1.3E-16 4.5E-21 119.1 10.1 74 14-90 3-76 (77)
12 1wxv_A BAG-family molecular ch 99.7 1.1E-16 3.6E-21 124.3 9.6 76 14-92 6-87 (92)
13 2kd0_A LRR repeats and ubiquit 99.7 1.8E-16 6.3E-21 121.4 10.7 76 13-91 10-85 (85)
14 3v6c_B Ubiquitin; structural g 99.7 1.8E-16 6.3E-21 122.7 9.8 80 7-89 9-89 (91)
15 2lxa_A Ubiquitin-like protein 99.7 4.5E-17 1.5E-21 125.3 5.1 75 15-92 1-80 (87)
16 3plu_A Ubiquitin-like modifier 99.7 2.6E-16 8.9E-21 121.5 8.6 75 10-87 16-91 (93)
17 2kk8_A Uncharacterized protein 99.7 2E-16 6.9E-21 120.9 7.8 73 15-90 10-84 (84)
18 1uh6_A Ubiquitin-like 5; beta- 99.6 3.9E-16 1.3E-20 122.6 8.8 73 12-87 25-98 (100)
19 3m62_B UV excision repair prot 99.6 2.6E-16 8.8E-21 125.6 7.1 75 15-92 1-76 (106)
20 3dbh_I NEDD8; cell cycle, acti 99.6 8.3E-16 2.9E-20 117.7 9.5 78 10-90 7-85 (88)
21 2dzi_A Ubiquitin-like protein 99.6 8.9E-16 3.1E-20 115.7 9.5 75 13-90 5-80 (81)
22 3m63_B Ubiquitin domain-contai 99.6 1.5E-16 5.1E-21 125.9 4.9 76 12-90 25-100 (101)
23 4a20_A Ubiquitin-like protein 99.6 5E-16 1.7E-20 122.1 7.7 76 13-91 17-97 (98)
24 4hcn_B Polyubiquitin, ubiquiti 99.6 6.8E-16 2.3E-20 121.3 8.2 78 10-90 17-95 (98)
25 1wx7_A Ubiquilin 3; ubiquitin- 99.6 3.4E-15 1.2E-19 118.9 11.9 82 8-92 10-91 (106)
26 2wyq_A HHR23A, UV excision rep 99.6 1.8E-15 6.1E-20 115.2 9.7 76 13-91 3-82 (85)
27 1wx8_A Riken cDNA 4931431F19; 99.6 1.7E-15 5.8E-20 118.3 9.2 78 12-92 14-91 (96)
28 1j8c_A Ubiquitin-like protein 99.6 4.2E-15 1.4E-19 122.0 11.6 77 13-92 30-106 (125)
29 3phx_B Ubiquitin-like protein 99.6 2.1E-15 7.4E-20 113.3 9.0 72 15-89 4-76 (79)
30 1uel_A HHR23B, UV excision rep 99.6 3.8E-15 1.3E-19 116.3 10.6 74 16-92 1-78 (95)
31 1ttn_A DC-UBP, dendritic cell- 99.6 2.6E-15 9E-20 119.6 9.5 78 12-92 20-98 (106)
32 4fbj_B NEDD8; effector-HOST ta 99.6 2.3E-15 7.7E-20 115.9 8.7 74 16-92 1-75 (88)
33 4eew_A Large proline-rich prot 99.6 3.3E-15 1.1E-19 114.7 9.3 73 12-88 14-87 (88)
34 2kan_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 115.3 10.5 78 12-92 12-90 (94)
35 2hj8_A Interferon-induced 17 k 99.6 2.4E-15 8.3E-20 115.7 8.1 76 14-92 3-79 (88)
36 2l7r_A Ubiquitin-like protein 99.6 2.6E-15 8.8E-20 116.9 7.5 79 8-90 12-90 (93)
37 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.5E-15 2.2E-19 116.4 9.7 76 13-91 23-98 (101)
38 1v5o_A 1700011N24RIK protein; 99.6 4.7E-15 1.6E-19 117.4 8.7 75 15-92 7-87 (102)
39 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 1E-14 3.5E-19 111.5 10.3 78 12-92 4-82 (87)
40 4dwf_A HLA-B-associated transc 99.6 8.2E-15 2.8E-19 112.9 9.7 76 13-92 3-79 (90)
41 2fnj_B Transcription elongatio 99.6 9E-15 3.1E-19 118.1 9.8 74 14-90 1-81 (118)
42 1yqb_A Ubiquilin 3; structural 99.6 9.9E-15 3.4E-19 115.1 9.8 78 12-92 19-96 (100)
43 1wju_A NEDD8 ultimate buster-1 99.6 9.4E-15 3.2E-19 114.7 9.5 75 15-92 15-94 (100)
44 3vdz_A Ubiquitin-40S ribosomal 99.6 1.5E-14 5E-19 116.3 10.2 76 12-90 32-108 (111)
45 1sif_A Ubiquitin; hydrophobic 99.6 8.5E-15 2.9E-19 112.7 8.2 73 16-91 10-83 (88)
46 3mtn_B UBA80, ubcep1, ubiquiti 99.6 1.2E-14 4.3E-19 110.2 8.9 73 15-90 3-76 (85)
47 1x1m_A Ubiquitin-like protein 99.6 9.8E-15 3.4E-19 116.5 8.7 83 7-92 4-102 (107)
48 3n3k_B Ubiquitin; hydrolase, p 99.6 7.7E-15 2.6E-19 111.5 7.6 73 15-90 3-76 (85)
49 1ndd_A NEDD8, protein (ubiquit 99.6 1.4E-14 4.9E-19 107.4 8.9 72 16-90 1-73 (76)
50 3u30_A Ubiquitin, linear DI-ub 99.5 1.3E-14 4.6E-19 125.1 9.8 81 10-93 15-96 (172)
51 1wgd_A Homocysteine-responsive 99.5 1.1E-14 3.8E-19 113.1 8.2 76 14-92 6-88 (93)
52 2faz_A Ubiquitin-like containi 99.5 1.6E-14 5.4E-19 108.2 8.7 73 15-90 2-77 (78)
53 1wy8_A NP95-like ring finger p 99.5 3E-14 1E-18 109.5 10.1 76 14-92 6-84 (89)
54 3a9j_A Ubiquitin; protein comp 99.5 2.5E-14 8.5E-19 106.1 9.2 72 16-90 1-73 (76)
55 4ajy_B Transcription elongatio 99.5 4.5E-14 1.5E-18 113.6 11.2 91 14-107 1-105 (118)
56 2daf_A FLJ35834 protein; hypot 99.5 4.8E-14 1.6E-18 112.9 10.2 80 9-91 9-90 (118)
57 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 3.1E-14 1E-18 110.9 8.8 74 16-92 2-76 (96)
58 1yx5_B Ubiquitin; proteasome, 99.5 4.9E-14 1.7E-18 110.5 9.2 74 16-92 1-75 (98)
59 2ojr_A Ubiquitin; lanthide-bin 99.5 1.1E-13 3.6E-18 111.2 10.5 76 12-90 32-108 (111)
60 1v6e_A Cytoskeleton-associated 99.5 1.3E-13 4.4E-18 107.6 9.9 79 13-91 5-89 (95)
61 2kdi_A Ubiquitin, vacuolar pro 99.5 9.3E-14 3.2E-18 112.1 8.9 75 15-92 9-84 (114)
62 2gow_A HCG-1 protein, ubiquiti 99.5 1.1E-13 3.8E-18 113.2 8.4 81 8-91 10-101 (125)
63 1wgh_A Ubiquitin-like 3, HCG-1 99.5 3.5E-13 1.2E-17 108.8 11.2 78 11-91 12-100 (116)
64 2uyz_B Small ubiquitin-related 99.5 1.2E-13 4E-18 103.7 7.9 73 15-90 3-76 (79)
65 2kdb_A Homocysteine-responsive 99.5 6.1E-14 2.1E-18 110.3 6.5 73 12-87 20-99 (99)
66 1we6_A Splicing factor, putati 99.5 1.5E-13 5.3E-18 110.2 9.0 75 14-91 26-105 (111)
67 3rt3_B Ubiquitin-like protein 99.5 1.3E-13 4.3E-18 117.3 8.8 76 14-90 1-77 (159)
68 2kjr_A CG11242; UBL, ubiquitin 99.5 3.7E-13 1.3E-17 105.1 10.1 76 11-87 11-93 (95)
69 1wia_A Hypothetical ubiquitin- 99.4 2.6E-13 8.7E-18 105.7 9.1 74 13-92 5-80 (95)
70 3b1l_X E3 ubiquitin-protein li 99.2 7E-15 2.4E-19 109.5 0.0 72 16-90 1-73 (76)
71 1v2y_A 3300001G02RIK protein; 99.4 5.9E-14 2E-18 111.4 5.2 76 14-92 6-98 (105)
72 1wyw_B Ubiquitin-like protein 99.4 2E-13 6.9E-18 106.9 8.1 76 12-90 18-94 (97)
73 2dzj_A Synaptic glycoprotein S 99.4 4E-13 1.4E-17 103.4 8.9 73 13-86 8-85 (88)
74 3l0w_B Monoubiquitinated proli 99.4 5E-13 1.7E-17 115.1 9.2 73 16-91 1-74 (169)
75 3q3f_A Ribonuclease/ubiquitin 99.4 4.9E-13 1.7E-17 116.9 8.8 75 15-92 105-180 (189)
76 2kj6_A Tubulin folding cofacto 99.4 8.9E-13 3.1E-17 103.2 9.2 76 12-90 11-96 (97)
77 1we7_A SF3A1 protein; structur 99.4 6.8E-13 2.3E-17 107.1 8.5 74 15-91 25-109 (115)
78 4b6w_A Tubulin-specific chaper 99.4 8.1E-13 2.8E-17 101.2 8.5 76 15-90 2-84 (86)
79 4dbg_A Ranbp-type and C3HC4-ty 99.4 1.3E-12 4.4E-17 103.3 9.9 73 13-88 22-98 (105)
80 3b08_A Polyubiquitin-C, ubiqui 99.4 7.8E-13 2.7E-17 111.0 8.7 75 16-93 1-76 (152)
81 3rt3_B Ubiquitin-like protein 99.4 1.1E-12 3.8E-17 111.4 9.7 74 14-90 80-154 (159)
82 1t0y_A Tubulin folding cofacto 99.4 1.8E-12 6.1E-17 105.8 9.7 77 15-91 6-88 (122)
83 3u5e_m 60S ribosomal protein L 99.4 4.5E-14 1.5E-18 116.2 0.0 74 16-92 1-75 (128)
84 2kzr_A Ubiquitin thioesterase 99.3 2.8E-12 9.4E-17 98.1 8.4 76 16-92 1-80 (86)
85 3b08_A Polyubiquitin-C, ubiqui 99.3 5.6E-12 1.9E-16 105.7 9.5 73 15-90 76-149 (152)
86 3u5c_f 40S ribosomal protein S 99.3 1.7E-13 5.6E-18 116.0 0.0 74 16-92 1-75 (152)
87 3u30_A Ubiquitin, linear DI-ub 99.3 4.8E-12 1.6E-16 109.0 8.4 72 15-89 96-168 (172)
88 1se9_A Ubiquitin family; ubiqu 99.3 7E-12 2.4E-16 102.3 8.6 77 12-91 13-104 (126)
89 1wf9_A NPL4 family protein; be 99.3 1.4E-11 4.7E-16 98.2 9.5 74 16-92 8-97 (107)
90 3ai5_A Yeast enhanced green fl 99.3 1.1E-11 3.8E-16 115.8 9.6 74 13-89 231-305 (307)
91 1oqy_A HHR23A, UV excision rep 99.3 8.5E-12 2.9E-16 119.6 8.7 76 13-91 5-84 (368)
92 1wjn_A Tubulin-folding protein 99.1 6.6E-10 2.2E-14 86.7 9.4 81 10-90 4-93 (97)
93 2xzm_9 RPS31E; ribosome, trans 99.0 4.1E-11 1.4E-15 104.3 0.0 68 16-91 1-69 (189)
94 2io1_B Small ubiquitin-related 98.9 5.8E-09 2E-13 81.0 8.4 76 13-91 5-81 (94)
95 3a4r_A Nfatc2-interacting prot 98.9 9E-09 3.1E-13 77.3 9.1 74 12-88 4-79 (79)
96 2io0_B Small ubiquitin-related 98.8 2.2E-08 7.4E-13 77.2 9.3 77 12-91 2-79 (91)
97 1wm3_A Ubiquitin-like protein 98.8 2E-08 7E-13 73.9 8.7 69 16-87 2-71 (72)
98 2d07_B Ubiquitin-like protein 98.7 4.5E-08 1.5E-12 75.7 8.9 76 12-90 14-90 (93)
99 1wz0_A Ubiquitin-like protein 98.7 1.3E-07 4.5E-12 74.6 10.8 75 13-90 22-97 (104)
100 3kbb_A Phosphorylated carbohyd 98.7 3.9E-09 1.3E-13 91.9 0.9 92 171-277 84-179 (216)
101 2eke_C Ubiquitin-like protein 98.7 1.8E-07 6.2E-12 74.0 10.4 76 12-90 28-103 (106)
102 2k8h_A Small ubiquitin protein 98.6 1.2E-07 3.9E-12 75.6 8.9 78 12-92 23-101 (110)
103 2wm8_A MDP-1, magnesium-depend 98.6 3.4E-08 1.2E-12 85.0 6.2 120 147-283 27-165 (187)
104 2fpr_A Histidine biosynthesis 98.6 5.8E-08 2E-12 83.2 7.0 127 145-283 12-161 (176)
105 2pjh_A Protein NPL4, nuclear p 98.6 5.8E-08 2E-12 73.0 5.3 73 15-87 4-78 (80)
106 2pr7_A Haloacid dehalogenase/e 98.6 6.3E-09 2.2E-13 83.8 -0.7 113 147-282 2-118 (137)
107 3l8h_A Putative haloacid dehal 98.5 6.1E-08 2.1E-12 82.3 5.1 123 147-281 1-144 (179)
108 3ib6_A Uncharacterized protein 98.5 1.2E-07 4.3E-12 81.6 6.5 126 146-282 2-142 (189)
109 4g9b_A Beta-PGM, beta-phosphog 98.4 6.3E-08 2.1E-12 86.7 2.7 118 172-306 96-223 (243)
110 3kzx_A HAD-superfamily hydrola 98.4 1.7E-07 5.8E-12 82.0 5.4 99 170-283 102-205 (231)
111 1nnl_A L-3-phosphoserine phosp 98.4 2.9E-07 1E-11 80.5 5.2 108 171-281 86-196 (225)
112 2ah5_A COG0546: predicted phos 98.4 7.2E-08 2.5E-12 83.9 1.2 94 171-281 84-180 (210)
113 4gib_A Beta-phosphoglucomutase 98.4 1.3E-07 4.6E-12 84.8 2.8 94 172-282 117-214 (250)
114 2oda_A Hypothetical protein ps 98.3 5.3E-07 1.8E-11 78.6 6.3 117 145-282 4-132 (196)
115 3m9l_A Hydrolase, haloacid deh 98.3 1.1E-07 3.9E-12 81.9 1.6 124 146-283 5-172 (205)
116 2gmw_A D,D-heptose 1,7-bisphos 98.3 4.3E-07 1.5E-11 79.8 5.1 135 138-278 16-171 (211)
117 3e58_A Putative beta-phosphogl 98.3 1.1E-07 3.7E-12 81.2 0.7 98 171-283 89-190 (214)
118 2p9j_A Hypothetical protein AQ 98.3 4E-07 1.4E-11 76.1 4.1 110 146-279 8-124 (162)
119 4efo_A Serine/threonine-protei 98.3 2.5E-06 8.7E-11 65.7 7.6 66 22-90 21-89 (94)
120 3m1y_A Phosphoserine phosphata 98.3 8.6E-07 2.9E-11 76.5 5.5 128 170-315 74-207 (217)
121 2pib_A Phosphorylated carbohyd 98.2 1.9E-07 6.5E-12 79.8 0.8 95 170-279 83-181 (216)
122 3umb_A Dehalogenase-like hydro 98.2 3.8E-07 1.3E-11 79.5 2.7 96 171-281 99-198 (233)
123 2no4_A (S)-2-haloacid dehaloge 98.2 2.6E-07 8.9E-12 81.5 1.3 95 172-281 106-204 (240)
124 4ex6_A ALNB; modified rossman 98.2 3.6E-07 1.2E-11 80.1 1.9 97 171-282 104-204 (237)
125 2i6x_A Hydrolase, haloacid deh 98.2 1.2E-07 4.2E-12 81.7 -1.1 98 171-283 89-195 (211)
126 3um9_A Haloacid dehalogenase, 98.2 4.9E-07 1.7E-11 78.5 2.5 97 171-282 96-196 (230)
127 3mc1_A Predicted phosphatase, 98.2 3E-07 1E-11 79.8 1.1 97 171-282 86-186 (226)
128 3kd3_A Phosphoserine phosphohy 98.2 1.7E-06 5.7E-11 74.1 5.7 100 172-277 83-185 (219)
129 3nuq_A Protein SSM1, putative 98.2 3.4E-07 1.2E-11 83.1 1.1 98 170-278 141-245 (282)
130 1zrn_A L-2-haloacid dehalogena 98.2 3.6E-07 1.2E-11 79.9 1.2 96 171-281 95-194 (232)
131 4eze_A Haloacid dehalogenase-l 98.2 1.6E-06 5.3E-11 81.5 5.3 129 143-279 104-286 (317)
132 3qxg_A Inorganic pyrophosphata 98.1 9.7E-07 3.3E-11 77.9 3.4 98 171-282 109-210 (243)
133 3s6j_A Hydrolase, haloacid deh 98.1 5.7E-07 2E-11 78.1 1.8 97 170-281 90-190 (233)
134 3ed5_A YFNB; APC60080, bacillu 98.1 8.9E-07 3E-11 77.2 2.9 96 171-281 103-203 (238)
135 3sd7_A Putative phosphatase; s 98.1 4.5E-07 1.5E-11 79.9 0.7 97 171-282 110-211 (240)
136 2hdo_A Phosphoglycolate phosph 98.1 7.2E-07 2.5E-11 76.8 1.7 98 170-282 82-182 (209)
137 4dcc_A Putative haloacid dehal 98.1 2.5E-07 8.6E-12 81.2 -1.3 97 172-283 113-218 (229)
138 3fvv_A Uncharacterized protein 98.1 2.6E-06 8.9E-11 74.6 5.3 101 171-278 92-201 (232)
139 3zvl_A Bifunctional polynucleo 98.1 9.1E-06 3.1E-10 79.0 9.6 105 144-265 55-184 (416)
140 3cnh_A Hydrolase family protei 98.1 4.9E-07 1.7E-11 77.3 0.4 96 172-282 87-185 (200)
141 3kyd_D Small ubiquitin-related 98.1 1.4E-05 4.8E-10 63.9 8.9 74 13-89 38-112 (115)
142 2nyv_A Pgpase, PGP, phosphogly 98.1 1.4E-06 4.7E-11 76.4 3.3 93 170-277 82-178 (222)
143 2w43_A Hypothetical 2-haloalka 98.1 5.4E-07 1.8E-11 77.3 0.5 96 171-281 74-169 (201)
144 3n1u_A Hydrolase, HAD superfam 98.1 5.1E-06 1.7E-10 71.9 6.3 109 146-279 18-134 (191)
145 2hsz_A Novel predicted phospha 98.1 2.1E-06 7.2E-11 76.4 3.8 95 172-281 115-213 (243)
146 1qq5_A Protein (L-2-haloacid d 98.0 1.6E-06 5.6E-11 77.2 2.7 95 171-281 93-190 (253)
147 3pge_A SUMO-modified prolifera 98.0 1.6E-05 5.5E-10 69.6 8.8 74 13-89 27-100 (200)
148 2zg6_A Putative uncharacterize 98.0 3E-06 1E-10 73.9 4.2 96 171-282 95-192 (220)
149 3qnm_A Haloacid dehalogenase-l 98.0 1.4E-06 4.9E-11 75.8 1.8 98 171-283 107-208 (240)
150 3e8m_A Acylneuraminate cytidyl 98.0 1.9E-06 6.4E-11 72.0 2.3 109 146-281 3-121 (164)
151 3n07_A 3-deoxy-D-manno-octulos 98.0 3.2E-06 1.1E-10 73.8 3.3 110 146-280 24-141 (195)
152 3dv9_A Beta-phosphoglucomutase 98.0 1.1E-06 3.6E-11 77.3 0.1 98 171-282 108-209 (247)
153 4eek_A Beta-phosphoglucomutase 98.0 1.5E-06 5E-11 77.5 1.0 100 170-282 109-212 (259)
154 2o2x_A Hypothetical protein; s 98.0 7.5E-06 2.6E-10 71.8 5.6 128 145-278 29-177 (218)
155 3p96_A Phosphoserine phosphata 98.0 3.4E-06 1.2E-10 81.7 3.5 132 143-279 181-363 (415)
156 2hoq_A Putative HAD-hydrolase 97.9 1.3E-06 4.3E-11 77.2 0.3 95 172-281 95-194 (241)
157 3tix_A Ubiquitin-like protein 97.9 2.3E-05 8E-10 67.7 8.0 78 13-93 55-132 (207)
158 2p11_A Hypothetical protein; p 97.9 2E-06 6.7E-11 75.8 1.1 90 171-281 96-190 (231)
159 1k1e_A Deoxy-D-mannose-octulos 97.9 3.9E-06 1.3E-10 71.6 3.0 114 146-280 7-124 (180)
160 3u26_A PF00702 domain protein; 97.9 5.4E-06 1.9E-10 72.0 3.8 96 171-281 100-199 (234)
161 3l5k_A Protein GS1, haloacid d 97.9 2.7E-06 9.2E-11 75.3 1.8 100 171-283 112-218 (250)
162 3d6j_A Putative haloacid dehal 97.9 2.6E-06 8.7E-11 73.3 1.4 96 171-282 89-189 (225)
163 2fi1_A Hydrolase, haloacid deh 97.9 5.4E-06 1.8E-10 69.9 3.1 96 172-282 83-179 (190)
164 1rku_A Homoserine kinase; phos 97.9 2.4E-05 8.4E-10 67.1 7.3 99 171-279 69-169 (206)
165 3k1z_A Haloacid dehalogenase-l 97.9 4.4E-06 1.5E-10 75.1 2.5 97 171-283 106-207 (263)
166 3ij5_A 3-deoxy-D-manno-octulos 97.9 8.3E-06 2.8E-10 72.0 4.1 112 146-282 48-167 (211)
167 3umc_A Haloacid dehalogenase; 97.9 2.8E-06 9.4E-11 75.0 0.8 94 172-282 121-217 (254)
168 3iru_A Phoshonoacetaldehyde hy 97.8 3.9E-06 1.3E-10 74.9 1.7 98 171-282 111-213 (277)
169 3nas_A Beta-PGM, beta-phosphog 97.8 3.7E-06 1.3E-10 73.3 1.5 94 172-282 93-190 (233)
170 2hcf_A Hydrolase, haloacid deh 97.8 1.1E-05 3.7E-10 70.1 4.4 99 171-282 93-197 (234)
171 3mn1_A Probable YRBI family ph 97.8 7.4E-06 2.5E-10 70.7 3.3 110 146-280 18-135 (189)
172 3ddh_A Putative haloacid dehal 97.8 7.1E-06 2.4E-10 70.7 3.1 94 171-281 105-201 (234)
173 3smv_A S-(-)-azetidine-2-carbo 97.8 2.8E-06 9.7E-11 73.7 0.0 94 171-281 99-199 (240)
174 2b0c_A Putative phosphatase; a 97.8 6.9E-07 2.4E-11 76.5 -4.0 99 170-283 90-193 (206)
175 3umg_A Haloacid dehalogenase; 97.8 3.7E-06 1.3E-10 73.8 0.5 94 172-282 117-213 (254)
176 3nvb_A Uncharacterized protein 97.8 4E-06 1.4E-10 80.8 0.6 117 145-283 220-358 (387)
177 1te2_A Putative phosphatase; s 97.8 4.2E-06 1.4E-10 71.9 0.4 98 171-283 94-195 (226)
178 2fea_A 2-hydroxy-3-keto-5-meth 97.7 2.7E-05 9.3E-10 68.8 5.5 96 171-280 77-188 (236)
179 1q92_A 5(3)-deoxyribonucleotid 97.7 3.4E-06 1.2E-10 72.9 -0.5 40 171-210 75-116 (197)
180 2r8e_A 3-deoxy-D-manno-octulos 97.7 3.2E-05 1.1E-09 66.4 5.5 113 146-281 25-143 (188)
181 2g80_A Protein UTR4; YEL038W, 97.7 1.1E-05 3.8E-10 73.1 2.4 95 172-281 126-230 (253)
182 2qlt_A (DL)-glycerol-3-phospha 97.7 1.3E-05 4.5E-10 72.5 2.9 96 171-282 114-221 (275)
183 3bwv_A Putative 5'(3')-deoxyri 97.7 8.4E-05 2.9E-09 62.8 7.3 25 171-195 69-93 (180)
184 4ap9_A Phosphoserine phosphata 97.7 1.4E-05 4.9E-10 67.5 2.3 95 170-278 78-173 (201)
185 3mmz_A Putative HAD family hyd 97.6 1.3E-05 4.3E-10 68.4 1.7 110 146-279 11-126 (176)
186 2go7_A Hydrolase, haloacid deh 97.6 2.3E-05 8E-10 65.9 2.8 96 171-282 85-184 (207)
187 2jxx_A Nfatc2-interacting prot 97.6 0.00034 1.2E-08 54.2 8.9 74 12-88 22-97 (97)
188 2wf7_A Beta-PGM, beta-phosphog 97.6 1.7E-05 5.9E-10 68.0 1.5 93 172-281 92-188 (221)
189 2i7d_A 5'(3')-deoxyribonucleot 97.5 3.3E-05 1.1E-09 66.2 2.8 84 170-282 72-162 (193)
190 3skx_A Copper-exporting P-type 97.5 5.7E-05 2E-09 67.6 4.4 86 171-280 144-230 (280)
191 2pke_A Haloacid delahogenase-l 97.5 8.7E-05 3E-09 65.6 5.5 91 172-282 113-207 (251)
192 3vay_A HAD-superfamily hydrola 97.5 6.2E-06 2.1E-10 71.6 -2.3 92 171-282 105-200 (230)
193 2b82_A APHA, class B acid phos 97.5 3.8E-06 1.3E-10 74.0 -3.8 122 146-282 36-185 (211)
194 2i33_A Acid phosphatase; HAD s 97.5 7.6E-05 2.6E-09 67.9 4.8 68 143-210 55-144 (258)
195 1l7m_A Phosphoserine phosphata 97.5 5.2E-05 1.8E-09 64.5 3.3 103 171-278 76-182 (211)
196 2fdr_A Conserved hypothetical 97.4 8.9E-06 3E-10 70.4 -2.1 98 171-283 87-188 (229)
197 2bps_A YUKD protein; ubiquitin 97.4 0.00037 1.3E-08 52.1 6.2 70 14-86 3-80 (81)
198 1swv_A Phosphonoacetaldehyde h 97.3 0.00011 3.7E-09 65.4 3.6 95 172-281 104-204 (267)
199 3n28_A Phosphoserine phosphata 97.3 9.3E-05 3.2E-09 69.2 2.7 103 170-279 177-285 (335)
200 2l76_A Nfatc2-interacting prot 97.3 0.0019 6.4E-08 49.5 9.3 79 9-90 15-93 (95)
201 3v7o_A Minor nucleoprotein VP3 97.3 4.2E-05 1.4E-09 67.0 0.0 76 13-91 19-94 (227)
202 3i28_A Epoxide hydrolase 2; ar 97.2 4.9E-05 1.7E-09 73.9 -0.1 96 171-283 100-205 (555)
203 3goe_A DNA repair protein RAD6 97.2 0.0028 9.6E-08 46.6 8.8 72 14-88 8-81 (82)
204 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00074 2.5E-08 54.8 5.6 69 17-86 13-119 (128)
205 2obb_A Hypothetical protein; s 97.0 0.0012 4.3E-08 54.5 6.5 57 146-205 2-59 (142)
206 3ocu_A Lipoprotein E; hydrolas 96.9 0.00087 3E-08 61.1 5.1 68 143-210 54-145 (262)
207 3uf8_A Ubiquitin-like protein 96.9 0.0039 1.3E-07 54.9 9.2 78 12-92 18-95 (209)
208 3pct_A Class C acid phosphatas 96.8 0.00062 2.1E-08 62.0 3.5 65 146-210 57-145 (260)
209 2al3_A TUG long isoform; TUG U 96.8 0.0022 7.7E-08 48.6 5.9 73 17-92 11-84 (90)
210 3ix6_A TS, tsase, thymidylate 96.7 0.00029 9.8E-09 66.8 0.0 76 12-90 18-93 (360)
211 3qx1_A FAS-associated factor 1 96.7 0.013 4.4E-07 43.7 9.2 74 12-87 4-81 (84)
212 3epr_A Hydrolase, haloacid deh 96.6 0.004 1.4E-07 55.6 7.4 57 146-210 4-64 (264)
213 3qgm_A P-nitrophenyl phosphata 96.6 0.0046 1.6E-07 55.0 7.4 57 146-210 7-67 (268)
214 3ewi_A N-acylneuraminate cytid 96.6 0.0007 2.4E-08 57.5 1.7 110 145-280 7-124 (168)
215 1wr8_A Phosphoglycolate phosph 96.5 0.0034 1.1E-07 55.2 6.2 56 147-209 3-59 (231)
216 3mpo_A Predicted hydrolase of 96.5 0.0049 1.7E-07 55.2 6.9 57 147-210 5-62 (279)
217 4dw8_A Haloacid dehalogenase-l 96.4 0.004 1.4E-07 55.8 6.0 57 146-209 4-61 (279)
218 1xpj_A Hypothetical protein; s 96.4 0.0035 1.2E-07 50.3 5.0 50 148-198 2-52 (126)
219 2gfh_A Haloacid dehalogenase-l 96.4 0.0014 4.9E-08 58.7 2.7 91 171-276 121-215 (260)
220 3pgv_A Haloacid dehalogenase-l 96.3 0.0039 1.3E-07 56.5 5.5 59 145-210 19-78 (285)
221 2dzk_A UBX domain-containing p 96.3 0.044 1.5E-06 43.0 10.9 76 12-88 10-89 (109)
222 4da1_A Protein phosphatase 1K, 96.3 0.00068 2.3E-08 65.2 0.0 75 13-90 28-102 (389)
223 3gyg_A NTD biosynthesis operon 96.3 0.012 4E-07 53.2 8.3 67 143-214 18-89 (289)
224 1l6r_A Hypothetical protein TA 96.3 0.004 1.4E-07 54.9 5.0 57 147-210 5-62 (227)
225 3dnp_A Stress response protein 96.2 0.0057 2E-07 55.1 5.7 58 146-210 5-63 (290)
226 1xvi_A MPGP, YEDP, putative ma 96.2 0.0069 2.4E-07 54.8 6.3 58 146-210 8-66 (275)
227 1nrw_A Hypothetical protein, h 96.2 0.0054 1.9E-07 55.6 5.6 56 147-209 4-60 (288)
228 2pq0_A Hypothetical conserved 96.2 0.0052 1.8E-07 54.6 5.3 56 147-209 3-59 (258)
229 3a1c_A Probable copper-exporti 96.2 0.014 4.7E-07 53.1 8.2 106 145-278 141-247 (287)
230 3dao_A Putative phosphatse; st 96.1 0.0054 1.8E-07 55.5 5.0 60 144-209 18-78 (283)
231 1vjr_A 4-nitrophenylphosphatas 96.1 0.013 4.4E-07 52.1 7.4 57 146-210 16-76 (271)
232 3pdw_A Uncharacterized hydrola 96.1 0.0059 2E-07 54.3 5.2 57 146-210 5-65 (266)
233 1rkq_A Hypothetical protein YI 96.0 0.01 3.5E-07 53.8 6.6 57 147-210 5-62 (282)
234 2daj_A KIAA0977 protein, COBL- 96.0 0.056 1.9E-06 40.2 9.0 81 8-91 3-84 (91)
235 3kc2_A Uncharacterized protein 95.9 0.014 4.8E-07 55.3 7.2 58 146-211 12-74 (352)
236 1yns_A E-1 enzyme; hydrolase f 95.9 0.0025 8.6E-08 57.4 1.9 95 170-281 129-230 (261)
237 3fzq_A Putative hydrolase; YP_ 95.9 0.0049 1.7E-07 54.8 3.7 56 147-209 5-61 (274)
238 2hx1_A Predicted sugar phospha 95.8 0.014 4.7E-07 52.6 6.5 57 146-210 13-73 (284)
239 1zjj_A Hypothetical protein PH 95.7 0.013 4.4E-07 52.3 5.7 54 148-209 2-59 (263)
240 2zos_A MPGP, mannosyl-3-phosph 95.7 0.011 3.8E-07 52.5 5.2 54 147-209 2-56 (249)
241 1nf2_A Phosphatase; structural 95.7 0.016 5.5E-07 51.9 6.3 56 147-210 2-58 (268)
242 2x4d_A HLHPP, phospholysine ph 95.7 0.023 7.7E-07 49.8 7.1 59 147-209 12-74 (271)
243 2ho4_A Haloacid dehalogenase-l 95.6 0.032 1.1E-06 48.8 8.0 57 146-210 6-66 (259)
244 2oyc_A PLP phosphatase, pyrido 95.6 0.021 7.1E-07 52.2 6.9 56 147-210 21-80 (306)
245 1qyi_A ZR25, hypothetical prot 95.6 0.0021 7.3E-08 61.7 -0.0 104 170-282 214-342 (384)
246 1ltq_A Polynucleotide kinase; 95.5 0.012 4.1E-07 53.6 5.0 116 147-281 159-296 (301)
247 2b30_A Pvivax hypothetical pro 95.5 0.022 7.6E-07 52.2 6.8 57 147-210 27-88 (301)
248 2hi0_A Putative phosphoglycola 95.5 0.0057 1.9E-07 53.5 2.5 96 170-281 109-208 (240)
249 2c4n_A Protein NAGD; nucleotid 95.3 0.035 1.2E-06 47.6 7.1 40 147-194 3-43 (250)
250 2rbk_A Putative uncharacterize 95.2 0.0059 2E-07 54.4 1.6 54 148-208 3-57 (261)
251 3f9r_A Phosphomannomutase; try 95.2 0.023 8E-07 50.6 5.5 50 146-202 3-53 (246)
252 1yv9_A Hydrolase, haloacid deh 94.9 0.04 1.4E-06 48.7 6.3 48 146-201 4-52 (264)
253 3l7y_A Putative uncharacterize 94.9 0.013 4.4E-07 53.6 3.1 55 147-208 37-93 (304)
254 1s2o_A SPP, sucrose-phosphatas 94.9 0.011 3.9E-07 52.3 2.7 55 148-210 4-58 (244)
255 2amy_A PMM 2, phosphomannomuta 94.8 0.041 1.4E-06 48.5 5.9 54 145-208 4-57 (246)
256 2fue_A PMM 1, PMMH-22, phospho 94.7 0.038 1.3E-06 49.4 5.5 50 146-202 12-61 (262)
257 1rlm_A Phosphatase; HAD family 94.7 0.018 6.3E-07 51.6 3.4 55 147-208 3-59 (271)
258 3r4c_A Hydrolase, haloacid deh 94.6 0.021 7.3E-07 50.6 3.8 46 146-197 11-57 (268)
259 2om6_A Probable phosphoserine 94.6 0.014 4.7E-07 49.8 2.3 96 172-282 100-203 (235)
260 1wj4_A KIAA0794 protein; UBX d 94.5 0.25 8.5E-06 39.6 9.4 73 13-87 41-117 (124)
261 1u02_A Trehalose-6-phosphate p 94.4 0.026 8.8E-07 49.9 3.8 55 148-205 2-57 (239)
262 4fe3_A Cytosolic 5'-nucleotida 94.3 0.28 9.6E-06 44.4 10.5 41 170-210 140-181 (297)
263 1ip9_A BEM1 protein; ubiquitin 93.9 0.23 7.8E-06 37.0 7.3 72 14-88 11-84 (85)
264 1oey_A P67-PHOX, neutrophil cy 93.5 0.21 7.2E-06 37.2 6.6 46 13-59 3-48 (83)
265 3zx4_A MPGP, mannosyl-3-phosph 93.3 0.08 2.8E-06 46.9 4.9 49 149-209 2-51 (259)
266 1ryj_A Unknown; beta/alpha pro 92.0 1.2 4E-05 31.6 8.7 60 16-87 5-64 (70)
267 1vd2_A Protein kinase C, IOTA 91.7 0.81 2.8E-05 34.4 7.7 49 13-61 4-52 (89)
268 2l32_A Small archaeal modifier 91.2 0.62 2.1E-05 33.7 6.6 60 16-88 1-61 (74)
269 2cr5_A Reproduction 8; UBX dom 90.7 1.9 6.6E-05 33.3 9.5 72 14-87 22-96 (109)
270 4a3p_A Ubiquitin carboxyl-term 90.6 1 3.5E-05 39.4 8.6 71 16-86 128-205 (217)
271 3jyu_A Ubiquitin carboxyl-term 90.4 1.7 5.9E-05 38.3 10.1 72 16-87 140-218 (231)
272 2hi0_A Putative phosphoglycola 89.1 0.12 4.3E-06 44.7 1.5 17 147-163 4-20 (240)
273 4eut_A Serine/threonine-protei 87.5 1.9 6.5E-05 40.4 8.8 68 22-91 319-388 (396)
274 2om6_A Probable phosphoserine 87.3 0.15 5.2E-06 43.1 0.9 17 147-163 4-20 (235)
275 4as2_A Phosphorylcholine phosp 87.1 0.44 1.5E-05 44.5 3.9 37 171-207 143-180 (327)
276 1s3s_G P47 protein; AAA ATPase 86.2 1.4 4.8E-05 35.2 6.0 70 14-84 51-123 (127)
277 2gfh_A Haloacid dehalogenase-l 86.1 0.22 7.7E-06 44.1 1.3 18 146-163 17-34 (260)
278 2kvr_A Ubiquitin carboxyl-term 85.6 0.68 2.3E-05 37.3 3.8 33 28-60 59-91 (130)
279 1tyg_B YJBS; alpha beta barrel 84.4 2.2 7.5E-05 31.8 5.9 60 19-88 22-82 (87)
280 3ivf_A Talin-1; FERM domain, c 83.0 3.3 0.00011 38.9 8.0 73 14-87 2-82 (371)
281 2yj3_A Copper-transporting ATP 83.5 0.24 8.3E-06 44.2 0.0 87 170-279 135-222 (263)
282 1y8a_A Hypothetical protein AF 82.9 0.37 1.3E-05 44.5 1.2 39 171-209 103-141 (332)
283 1yns_A E-1 enzyme; hydrolase f 81.8 0.38 1.3E-05 42.8 0.9 17 146-162 9-25 (261)
284 2cu3_A Unknown function protei 79.6 3.9 0.00013 28.2 5.4 58 20-88 2-59 (64)
285 4e71_A Plexin-B2, MM1; transme 79.2 8.4 0.00029 30.0 7.7 73 14-87 10-108 (111)
286 1wj6_A KIAA0049 protein, RSGI 78.4 18 0.00063 27.5 9.1 41 13-53 12-54 (101)
287 3a1c_A Probable copper-exporti 78.2 0.77 2.6E-05 41.2 1.7 17 147-163 32-48 (287)
288 2kl0_A Putative thiamin biosyn 77.6 3.4 0.00012 29.5 4.7 58 20-88 3-60 (73)
289 3qa8_A MGC80376 protein; kinas 77.1 2.2 7.4E-05 43.7 4.9 53 22-76 319-371 (676)
290 2r2o_A Plexin-B1; effector dom 76.8 10 0.00035 30.7 7.7 75 14-88 23-127 (138)
291 2k5p_A THis protein, thiamine- 76.1 2.5 8.4E-05 30.8 3.6 61 19-87 2-63 (78)
292 1f0z_A THis protein; ubiquitin 75.2 3.7 0.00013 28.5 4.3 58 20-87 3-60 (66)
293 1q1o_A Cell division control p 75.0 11 0.00036 28.8 7.0 37 15-51 5-49 (98)
294 1wgk_A Riken cDNA 2900073H19 p 72.7 11 0.00039 29.2 7.0 72 15-90 11-105 (114)
295 1vjk_A Molybdopterin convertin 71.2 29 0.00099 25.7 9.8 67 15-87 9-92 (98)
296 3rpf_C Molybdopterin convertin 68.6 8 0.00028 27.3 4.9 65 17-87 2-68 (74)
297 3h6n_A Plexin-D1; structural g 66.7 33 0.0011 27.3 8.4 72 15-87 4-102 (127)
298 4e74_A Plexin-A4; RBD, structu 66.2 18 0.00062 28.4 6.8 73 14-87 12-112 (117)
299 2hj1_A Hypothetical protein; s 65.5 22 0.00075 26.8 7.0 69 12-88 9-84 (97)
300 2cu1_A Mitogen-activated prote 62.2 27 0.00093 26.6 6.8 38 14-51 7-44 (103)
301 3onh_A Ubiquitin-activating en 61.7 19 0.00066 28.6 6.2 60 29-92 10-82 (127)
302 4gxt_A A conserved functionall 61.4 5.4 0.00018 37.8 3.5 38 172-209 222-260 (385)
303 3kuz_A Plexin-C1; structural g 61.4 53 0.0018 26.0 8.7 73 14-87 18-124 (126)
304 2ylm_A Ubiquitin carboxyl-term 61.4 5.6 0.00019 39.4 3.8 33 28-60 39-71 (530)
305 4gxt_A A conserved functionall 61.1 5.1 0.00017 38.0 3.3 28 254-281 311-343 (385)
306 3po0_A Small archaeal modifier 59.7 37 0.0012 24.5 7.3 56 25-87 18-83 (89)
307 2eel_A Cell death activator CI 53.4 67 0.0023 23.9 8.4 71 16-92 10-82 (91)
308 1rm6_C 4-hydroxybenzoyl-COA re 52.7 13 0.00044 30.8 4.0 31 14-44 1-31 (161)
309 1t3q_A Quinoline 2-oxidoreduct 49.8 16 0.00056 30.2 4.2 30 14-43 8-37 (168)
310 2k9x_A Tburm1, uncharacterized 49.3 8.4 0.00029 29.9 2.2 62 25-90 21-99 (110)
311 2qjl_A URM1, ubiquitin-related 47.9 38 0.0013 25.2 5.7 24 25-48 20-45 (99)
312 1y8x_B Ubiquitin-activating en 47.8 16 0.00055 27.7 3.5 63 24-87 4-82 (98)
313 3qij_A Protein 4.1; cytoskelet 47.7 20 0.00069 32.3 4.9 43 10-52 12-55 (296)
314 1wgy_A RAP guanine nucleotide 45.7 98 0.0034 23.6 9.2 74 15-90 9-87 (104)
315 2npt_B Mitogen-activated prote 45.1 63 0.0021 24.3 6.2 38 14-51 19-56 (100)
316 3r8s_T 50S ribosomal protein L 44.2 43 0.0015 25.1 5.3 40 25-66 28-67 (93)
317 2cs4_A Protein C12ORF2; GTP bi 43.9 20 0.00068 27.1 3.4 40 9-50 3-43 (95)
318 2q5w_D Molybdopterin convertin 43.4 29 0.00098 24.2 4.2 53 26-87 17-71 (77)
319 2c60_A Human mitogen-activated 43.3 72 0.0025 24.3 6.4 40 14-53 30-69 (111)
320 2bkf_A Zinc-finger protein NBR 42.0 1E+02 0.0035 22.7 7.0 40 14-53 5-46 (87)
321 1fm0_D Molybdopterin convertin 41.9 38 0.0013 23.8 4.7 53 26-87 18-75 (81)
322 1ffv_A CUTS, iron-sulfur prote 40.3 25 0.00085 29.1 3.9 28 16-43 4-31 (163)
323 1rws_A Hypothetical protein PF 38.1 11 0.00039 26.8 1.2 48 28-87 24-71 (77)
324 2jrh_A Mitogen-activated prote 38.0 93 0.0032 23.1 6.1 37 15-51 4-40 (94)
325 1ef1_A Moesin; membrane, FERM 38.0 59 0.002 28.8 6.4 38 16-53 2-39 (294)
326 3ig3_A Plxna3 protein; plexin 37.8 1.2E+02 0.0042 30.4 8.9 74 14-88 232-333 (627)
327 1n62_A Carbon monoxide dehydro 37.7 28 0.00097 28.9 3.8 28 16-43 4-31 (166)
328 1wgr_A Growth factor receptor- 37.2 68 0.0023 24.3 5.6 40 16-55 10-50 (100)
329 1h4r_A Merlin; FERM, neurofibr 37.1 50 0.0017 29.7 5.8 69 13-82 20-91 (314)
330 2l52_A Methanosarcina acetivor 36.8 86 0.003 23.1 6.2 33 15-48 3-41 (99)
331 2juo_A GA-binding protein alph 36.5 1E+02 0.0035 22.6 6.1 56 28-86 6-61 (89)
332 3hm6_X Plexin-B1; structural g 36.1 1.1E+02 0.0038 30.8 8.3 74 14-88 256-360 (644)
333 2r2q_A Gamma-aminobutyric acid 36.0 47 0.0016 25.4 4.6 61 14-76 26-93 (110)
334 3gyg_A NTD biosynthesis operon 36.0 31 0.0011 30.1 4.1 100 171-280 122-252 (289)
335 1zjj_A Hypothetical protein PH 35.9 3.6 0.00012 36.0 -2.2 93 172-278 131-226 (263)
336 2nnz_A Hypothetical protein; b 35.8 20 0.00069 29.4 2.6 31 14-44 28-61 (153)
337 2ho4_A Haloacid dehalogenase-l 35.6 0.96 3.3E-05 39.1 -6.0 96 171-280 122-222 (259)
338 1vq8_S 50S ribosomal protein L 34.9 46 0.0016 24.4 4.2 36 24-59 22-57 (85)
339 2c7h_A RBBP6, retinoblastoma-b 34.6 1.1E+02 0.0038 22.4 6.2 38 15-52 6-46 (86)
340 3hrd_D Nicotinate dehydrogenas 34.5 29 0.00099 28.7 3.3 27 16-42 4-30 (160)
341 3tve_T 50S ribosomal protein L 33.2 65 0.0022 24.0 4.8 36 25-60 22-57 (92)
342 2v1y_A Phosphatidylinositol-4, 32.5 83 0.0028 24.2 5.4 38 12-49 16-54 (108)
343 2g1e_A Hypothetical protein TA 32.2 1.3E+02 0.0046 21.2 7.3 56 28-87 18-84 (90)
344 3j21_T 50S ribosomal protein L 31.3 78 0.0027 23.2 4.9 36 24-59 23-58 (86)
345 2zjr_Q 50S ribosomal protein L 29.8 56 0.0019 24.5 4.0 34 27-60 25-58 (95)
346 4gdk_A Ubiquitin-like protein 29.7 61 0.0021 24.0 4.1 59 15-75 5-69 (91)
347 2dhz_A RAP guanine nucleotide 28.2 1.7E+02 0.0058 22.9 6.6 74 14-89 8-92 (120)
348 1f2r_I Inhibitor of caspase-ac 28.1 1.9E+02 0.0066 21.8 11.4 74 14-91 17-92 (100)
349 1ibx_B Chimera of IGG binding 28.0 1.1E+02 0.0037 24.7 5.6 55 35-92 82-138 (145)
350 1iue_A Ferredoxin; electron tr 27.1 88 0.003 22.8 4.8 28 14-41 1-28 (98)
351 3j08_A COPA, copper-exporting 26.7 1E+02 0.0035 30.9 6.6 62 145-210 435-497 (645)
352 2jc9_A Cytosolic purine 5'-nuc 26.3 67 0.0023 31.9 4.9 41 168-209 243-285 (555)
353 3rfu_A Copper efflux ATPase; a 26.2 1.1E+02 0.0039 31.2 6.9 62 145-210 532-594 (736)
354 3m95_A Autophagy related prote 25.5 71 0.0024 25.2 4.0 61 14-76 35-102 (125)
355 3h9d_A ATG8, microtubule-assoc 24.5 66 0.0023 25.1 3.7 61 14-76 30-97 (119)
356 3hui_A Ferredoxin; cytochrome 24.5 92 0.0031 24.3 4.6 33 8-40 14-47 (126)
357 2bt6_A Adrenodoxin 1; rutheniu 24.3 75 0.0026 23.7 3.9 28 13-40 4-32 (108)
358 2ns5_A Partitioning-defective 24.0 2.1E+02 0.0073 20.9 8.7 30 15-44 2-32 (85)
359 1j0g_A Hypothetical protein 18 23.5 2.1E+02 0.0073 20.7 6.2 71 15-87 10-84 (92)
360 3rui_B Autophagy-related prote 23.4 89 0.0031 24.3 4.2 61 14-76 29-96 (118)
361 1a70_A Ferredoxin; iron-sulfur 23.3 1.2E+02 0.004 22.1 4.8 28 14-41 1-28 (97)
362 2zjd_A Microtubule-associated 23.2 1.6E+02 0.0056 23.2 5.8 61 14-76 34-103 (130)
363 1eo6_A GATE-16, golgi-associat 22.9 85 0.0029 24.3 4.0 61 14-76 27-94 (117)
364 2kmm_A Guanosine-3',5'-BIS(dip 22.8 1.2E+02 0.0041 20.4 4.5 60 18-89 3-63 (73)
365 2zkr_s 60S ribosomal protein L 22.7 1.1E+02 0.0038 25.0 4.8 36 25-60 94-129 (156)
366 3j09_A COPA, copper-exporting 21.7 1.6E+02 0.0054 30.0 6.9 62 145-210 513-575 (723)
367 1y8a_A Hypothetical protein AF 21.3 88 0.003 28.0 4.5 17 147-163 21-37 (332)
368 3ivf_A Talin-1; FERM domain, c 21.0 1.2E+02 0.0042 27.8 5.5 38 15-52 85-123 (371)
369 4a17_R RPL23A, 60S ribosomal p 20.2 1.4E+02 0.0048 24.3 4.8 36 24-59 87-122 (150)
No 1
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-78 Score=571.66 Aligned_cols=314 Identities=52% Similarity=0.864 Sum_probs=278.6
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
..++|+|+|||+|++|+|++++++||++||++|+++|||||++|||+++|++|++++|+.+|+++||++|++||||||++
T Consensus 2 ~~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 2 EVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp --CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 45689999999999999999999999999999999999999999999544479999999999999999999999999999
Q ss_pred Cccc---cCCCCCCccccccccchhhhhhhhhhhhhHHHHHhhhhhhcccccCCCcCCcceEEEecCCceEeccCCCCCC
Q 042485 92 DEII---VDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRRLSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENP 168 (332)
Q Consensus 92 ~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~~~~n~~k~~~~v~~~~~~~l~~~~~~kk~LVLDLD~TLi~~~~~~~~~ 168 (332)
+++. .+|++.++|+|||+.+.++..++++.+.|++++++|++.+.++.++||+++|++|||||||||||+.....++
T Consensus 82 ~~i~~~~~~p~~~~~~~eD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~k~tLVLDLDeTLvh~~~~~~~~ 161 (320)
T 3shq_A 82 ADIEDACSLPDNIGEVVDDFDDADEREESVAHSAVYLAKVQRRVRDYKIKELAPPREGKKLLVLDIDYTLFDHRSPAETG 161 (320)
T ss_dssp ----------CCCSCCCCTTCCCCC--CCSTTSHHHHHHHHHHHHHCCCCCSSCCCTTCEEEEECCBTTTBCSSSCCSSH
T ss_pred hhhcccccCCCcCCcccccCCCcccchhhhhhhhhhHHHHHHHHHhcCCCcCCCCcCCCcEEEEeccccEEcccccCCCc
Confidence 9887 6788899999999987777899999999999999999999999999999999999999999999998877778
Q ss_pred ceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 169 LQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 169 ~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
++++|||+++||++|+++|+|+||||+.+.||+++++.|+....+.+++.+++++.+++++....+|..++|||+.+|++
T Consensus 162 ~~~~RP~l~eFL~~l~~~yeivIfTas~~~ya~~vld~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~ 241 (320)
T 3shq_A 162 TELMRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWAL 241 (320)
T ss_dssp HHHBCTTHHHHHHHHHHHEEEEEECSSCHHHHHHHHHHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHHHHHH
T ss_pred ceEeCCCHHHHHHHHHhCCEEEEEcCCcHHHHHHHHHHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEEhHHhhcc
Confidence 89999999999999999999999999999999999999988766667777777776667776777787799999999999
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCCCchHHHHHHHHHHhcc-CCCCchhHhHhhHHHhhhhhh
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIA-DLDDLSNLDHGRWEFYIEDNT 326 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~~~L~~l~-~~~Dvr~~~~~~w~~~~~~~~ 326 (332)
||+ |++++||+|||+|.+|.+||+|||+|.+|++++.++.+|++|..|++||+.|+ .++|||+++|++|++|++++.
T Consensus 242 ~p~-rdl~~tIiIDdsp~~~~~~p~NgI~I~~~~~~~~~~~~D~eL~~L~~~L~~L~~~~~DVr~~~~~~w~~~~~~~~ 319 (320)
T 3shq_A 242 YKQ-YNSSNTIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTDTELLKLSDYLRKIAHHCPDFNSLNHRKWEHYHPKKN 319 (320)
T ss_dssp CTT-CCGGGEEEEESCGGGGTTSGGGEEECCCCCCHHHHTTTCCHHHHHHHHHHHHHHHCSCGGGCCGGGGGGCCC---
T ss_pred cCC-CChhHEEEEeCChHHhccCcCceEEeCeEcCCCCCCCccHHHHHHHHHHHHHhccCcchhHHHHHHHHHhhhhhc
Confidence 999 59999999999999999999999999999986545578999999999999999 999999999999999998864
No 2
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=100.00 E-value=3.5e-35 Score=261.26 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=130.6
Q ss_pred CCcCCcceEEEecCCceEeccCCC-CCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEE
Q 042485 142 PSREGKKLLVLDIDYTLFDHRSTA-ENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITAL 220 (332)
Q Consensus 142 ~~~~~kk~LVLDLD~TLi~~~~~~-~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~ 220 (332)
++..++++|||||||||||+.+.. .++++.+|||+++||++|+++|+|+||||+.+.||+.+++.|+.. ...+.+.
T Consensus 29 ~~~~~~~tLVLDLDeTLvh~~~~~~~~~~v~~RPgl~eFL~~l~~~yeivI~Tas~~~ya~~vl~~LDp~---~~~f~~r 105 (204)
T 3qle_A 29 PPYQRPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPI---HAFVSYN 105 (204)
T ss_dssp ---CCSEEEEEECBTTTEEEEEETTTEEEEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHTSTT---CSSEEEE
T ss_pred cccCCCeEEEEeccccEEeeeccccCceeEEeCCCHHHHHHHHHhCCEEEEEcCCcHHHHHHHHHHhCCC---CCeEEEE
Confidence 345678999999999999997653 345799999999999999999999999999999999999987542 1235555
Q ss_pred ecC-CceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCCCchHHHHHHH
Q 042485 221 LDH-LAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQ 299 (332)
Q Consensus 221 ~d~-~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~~ 299 (332)
+.+ +|.. ..| .++|||+.+ +| ++++||+|||++.+|.+||+|||+|.+|.+ + .|++|..|++
T Consensus 106 l~R~~c~~-----~~g-~y~KdL~~L-----gr-dl~~vIiIDDsp~~~~~~p~N~I~I~~~~~----~-~D~eL~~L~~ 168 (204)
T 3qle_A 106 LFKEHCVY-----KDG-VHIKDLSKL-----NR-DLSKVIIIDTDPNSYKLQPENAIPMEPWNG----E-ADDKLVRLIP 168 (204)
T ss_dssp ECGGGSEE-----ETT-EEECCGGGS-----CS-CGGGEEEEESCTTTTTTCGGGEEECCCCCS----S-CCCHHHHHHH
T ss_pred EEecceeE-----ECC-eeeecHHHh-----CC-ChHHEEEEECCHHHHhhCccCceEeeeECC----C-CChhHHHHHH
Confidence 544 4432 234 589999999 63 999999999999999999999999999987 3 4669999999
Q ss_pred HHHhcc--CCCCchhHhHhhHHH
Q 042485 300 YLLAIA--DLDDLSNLDHGRWEF 320 (332)
Q Consensus 300 ~L~~l~--~~~Dvr~~~~~~w~~ 320 (332)
||+.|+ .++|||.+++ +|+.
T Consensus 169 ~L~~L~~~~~~DVR~~L~-~~~~ 190 (204)
T 3qle_A 169 FLEYLATQQTKDVRPILN-SFED 190 (204)
T ss_dssp HHHHHHHTCCSCSHHHHT-TSSC
T ss_pred HHHHHhhcChHHHHHHHH-HhcC
Confidence 999998 5899999997 4654
No 3
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=100.00 E-value=3.2e-33 Score=244.68 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=134.6
Q ss_pred ccccCCCcCCcceEEEecCCceEeccCCCC----------------CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHH
Q 042485 137 IKLRNPSREGKKLLVLDIDYTLFDHRSTAE----------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWV 200 (332)
Q Consensus 137 ~~~l~~~~~~kk~LVLDLD~TLi~~~~~~~----------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya 200 (332)
+|...|+..+|++|||||||||||+...+. .+++.+|||+++||+++++.|+++|||++.+.||
T Consensus 5 lp~~~~~~~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~~~i~I~T~~~~~~a 84 (181)
T 2ght_A 5 LPEAKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYA 84 (181)
T ss_dssp SCCCCGGGTTSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSCHHHH
T ss_pred CCCCCcccCCCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 455666678999999999999999976432 1357899999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceEEEEecC-CceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 201 ELKMEELGVLTNPNYKITALLDH-LAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 201 ~~~l~~l~~~~~~~~~~~~~~d~-~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+.+++.++.. ..+..++.+ +|.. ..| .++|+|+.+ | +++++||+|||++..+.+||+|||+|.
T Consensus 85 ~~vl~~ld~~----~~f~~~~~rd~~~~-----~k~-~~~k~L~~L-----g-~~~~~~vivdDs~~~~~~~~~ngi~i~ 148 (181)
T 2ght_A 85 DPVADLLDKW----GAFRARLFRESCVF-----HRG-NYVKDLSRL-----G-RDLRRVLILDNSPASYVFHPDNAVPVA 148 (181)
T ss_dssp HHHHHHHCTT----CCEEEEECGGGSEE-----ETT-EEECCGGGT-----C-SCGGGEEEECSCGGGGTTCTTSBCCCC
T ss_pred HHHHHHHCCC----CcEEEEEeccCcee-----cCC-cEeccHHHh-----C-CCcceEEEEeCCHHHhccCcCCEeEec
Confidence 9999998663 234444433 3332 124 689999999 6 499999999999999999999999999
Q ss_pred cccCCcCCCCCchHHHHHHHHHHhccCCCCchhHhH
Q 042485 280 PFRKAHANRDSDQELVKLTQYLLAIADLDDLSNLDH 315 (332)
Q Consensus 280 ~f~~~~~~~~~D~~L~~L~~~L~~l~~~~Dvr~~~~ 315 (332)
+|++ +.+|++|..|++||+.|+.++|||.+++
T Consensus 149 ~~~~----~~~D~eL~~l~~~L~~l~~~~DVr~~l~ 180 (181)
T 2ght_A 149 SWFD----NMSDTELHDLLPFFEQLSRVDDVYSVLR 180 (181)
T ss_dssp CCSS----CTTCCHHHHHHHHHHHHTTCSCTHHHHC
T ss_pred cccC----CCChHHHHHHHHHHHHhCcCccHHHHhh
Confidence 9998 5689999999999999999999999985
No 4
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.6e-30 Score=226.71 Aligned_cols=146 Identities=23% Similarity=0.344 Sum_probs=121.4
Q ss_pred cCCcceEEEecCCceEeccCCCC----------------CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHh
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAE----------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~----------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l 207 (332)
..+|++|||||||||||+..... .+++.+|||+++||+++++.|+++|||++.+.||+.+++.+
T Consensus 25 ~~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~~~i~I~Tss~~~~a~~vl~~l 104 (195)
T 2hhl_A 25 DYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLL 104 (195)
T ss_dssp GTTCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSCHHHHHHHHHHH
T ss_pred cCCCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 46899999999999999976432 13578999999999999999999999999999999999998
Q ss_pred CCCCCCCceEEEEecC-CceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcC
Q 042485 208 GVLTNPNYKITALLDH-LAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHA 286 (332)
Q Consensus 208 ~~~~~~~~~~~~~~d~-~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~ 286 (332)
+.. ..+..++.+ +|.. .+| .++|+|+.+ | +++++||+|||++..+.+||.|||+|.+|.+
T Consensus 105 d~~----~~f~~~l~rd~~~~-----~k~-~~lK~L~~L-----g-~~~~~~vivDDs~~~~~~~~~ngi~i~~~~~--- 165 (195)
T 2hhl_A 105 DRW----GVFRARLFRESCVF-----HRG-NYVKDLSRL-----G-RELSKVIIVDNSPASYIFHPENAVPVQSWFD--- 165 (195)
T ss_dssp CCS----SCEEEEECGGGCEE-----ETT-EEECCGGGS-----S-SCGGGEEEEESCGGGGTTCGGGEEECCCCSS---
T ss_pred CCc----ccEEEEEEccccee-----cCC-ceeeeHhHh-----C-CChhHEEEEECCHHHhhhCccCccEEeeecC---
Confidence 764 234455533 3322 123 689999999 5 4999999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHhccCCCC
Q 042485 287 NRDSDQELVKLTQYLLAIADLDD 309 (332)
Q Consensus 287 ~~~~D~~L~~L~~~L~~l~~~~D 309 (332)
+.+|++|..|++||+.|+.++|
T Consensus 166 -~~~D~eL~~L~~~L~~l~~~~~ 187 (195)
T 2hhl_A 166 -DMTDTELLDLIPFFEGLSREDD 187 (195)
T ss_dssp -CTTCCHHHHHHHHHHHHHC---
T ss_pred -CCChHHHHHHHHHHHHHHhCcC
Confidence 4699999999999999998765
No 5
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.9e-24 Score=208.21 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=98.3
Q ss_pred CCcceEEEecCCceEeccCCC---------------------------------CCCceecCCcHHHHHHHHHhCCcEEE
Q 042485 145 EGKKLLVLDIDYTLFDHRSTA---------------------------------ENPLQLMRPYLHEFLTAAYAEYDIMI 191 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~---------------------------------~~~~~~~RP~l~eFL~~l~~~yeivI 191 (332)
.+|++||||||||||||...+ ..+++.+|||+++||++++++|+|+|
T Consensus 16 ~~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~~~yeivI 95 (372)
T 3ef0_A 16 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHI 95 (372)
T ss_dssp HTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHHTTEEEEE
T ss_pred CCCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHhcCcEEEE
Confidence 489999999999999995311 02367899999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhCCCCCCCceE-E-EEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccc
Q 042485 192 WSATSMKWVELKMEELGVLTNPNYKI-T-ALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFV 269 (332)
Q Consensus 192 ~Tas~~~ya~~~l~~l~~~~~~~~~~-~-~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~ 269 (332)
||++.+.||+++++.|+.. .++ . .++.+ ...|..++|||+.||+ +++++||||||++.+|.
T Consensus 96 ~Tas~~~yA~~vl~~LDp~----~~~f~~ri~sr--------~~~g~~~~KdL~~L~~-----~dl~~viiiDd~~~~~~ 158 (372)
T 3ef0_A 96 YTMGTKAYAKEVAKIIDPT----GKLFQDRVLSR--------DDSGSLAQKSLRRLFP-----CDTSMVVVIDDRGDVWD 158 (372)
T ss_dssp ECSSCHHHHHHHHHHHCTT----SCSSSSCEECT--------TTSSCSSCCCGGGTCS-----SCCTTEEEEESCSGGGT
T ss_pred EeCCcHHHHHHHHHHhccC----CceeeeEEEEe--------cCCCCcceecHHHhcC-----CCCceEEEEeCCHHHcC
Confidence 9999999999999988543 221 1 12211 1234457899999864 49999999999999999
Q ss_pred cCCCCeeeeccccCC
Q 042485 270 MNPQNGLAIKPFRKA 284 (332)
Q Consensus 270 ~~p~Ngi~I~~f~~~ 284 (332)
+|| |||+|.||.+.
T Consensus 159 ~~p-N~I~i~~~~~f 172 (372)
T 3ef0_A 159 WNP-NLIKVVPYEFF 172 (372)
T ss_dssp TCT-TEEECCCCCCS
T ss_pred CCC-cEeeeCCcccc
Confidence 998 99999999654
No 6
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.4e-23 Score=204.94 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=102.5
Q ss_pred cCCcceEEEecCCceEeccCCC---------------------------------CCCceecCCcHHHHHHHHHhCCcEE
Q 042485 144 REGKKLLVLDIDYTLFDHRSTA---------------------------------ENPLQLMRPYLHEFLTAAYAEYDIM 190 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~---------------------------------~~~~~~~RP~l~eFL~~l~~~yeiv 190 (332)
..+|++||||||+||||+...+ ..+++++|||+++||++++++|+|+
T Consensus 23 ~~~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~ls~~yEiv 102 (442)
T 3ef1_A 23 QEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELH 102 (442)
T ss_dssp HTTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHTTTEEEE
T ss_pred hcCCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHHhCCcEEE
Confidence 3489999999999999996421 0246889999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHhCCCCC-CCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccc
Q 042485 191 IWSATSMKWVELKMEELGVLTN-PNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFV 269 (332)
Q Consensus 191 I~Tas~~~ya~~~l~~l~~~~~-~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~ 269 (332)
|||++.+.||+++++.|+.... ..+| ++.|. ..|..++|||+.|++ +++++||||||+|.+|.
T Consensus 103 IfTas~~~YA~~Vl~~LDp~~~~f~~R---l~sRd--------~cg~~~~KdL~~ll~-----rdl~~vvIIDd~p~~~~ 166 (442)
T 3ef1_A 103 IYTMGTKAYAKEVAKIIDPTGKLFQDR---VLSRD--------DSGSLAQKSLRRLFP-----CDTSMVVVIDDRGDVWD 166 (442)
T ss_dssp EECSSCHHHHHHHHHHHCTTSTTTTTC---EECTT--------TSSCSSCCCGGGTCS-----SCCTTEEEEESCSGGGT
T ss_pred EEcCCCHHHHHHHHHHhccCCccccce---EEEec--------CCCCceeeehHHhcC-----CCcceEEEEECCHHHhC
Confidence 9999999999999998854321 1122 22121 124357899998753 49999999999999999
Q ss_pred cCCCCeeeeccccCC-cCCCCCchHHHHHH
Q 042485 270 MNPQNGLAIKPFRKA-HANRDSDQELVKLT 298 (332)
Q Consensus 270 ~~p~Ngi~I~~f~~~-~~~~~~D~~L~~L~ 298 (332)
+|| |||+|.||.+. ..++.+|..|....
T Consensus 167 ~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~ 195 (442)
T 3ef1_A 167 WNP-NLIKVVPYEFFVGIGDINSNFLAKST 195 (442)
T ss_dssp TCT-TEEECCCCCCSTTCCCSCC-------
T ss_pred CCC-CEEEcCCccccCCCCccccccccccc
Confidence 998 99999999653 34455676655543
No 7
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=1.1e-19 Score=142.71 Aligned_cols=83 Identities=24% Similarity=0.454 Sum_probs=76.0
Q ss_pred CceEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~-~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
..+|+|+|||+|+.| .|++++++||.+||++|++.+|||+++|||+| +|++++|+ +|++|||++|++|+|||+++
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 357999999999999 69999999999999999999999999999998 89999998 99999999999999999998
Q ss_pred CccccCCCC
Q 042485 92 DEIIVDPVD 100 (332)
Q Consensus 92 ~~~~~~~~~ 100 (332)
+ ++.+|..
T Consensus 81 ~-~~~~p~~ 88 (96)
T 1wgg_A 81 A-LPEEPSA 88 (96)
T ss_dssp C-CCCCCCC
T ss_pred h-cCCCCCc
Confidence 6 6556643
No 8
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.79 E-value=2.2e-19 Score=139.17 Aligned_cols=79 Identities=46% Similarity=0.683 Sum_probs=72.5
Q ss_pred ceEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 14 EELTLTVKWSGKEYTV-RVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i-~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.+|+|+|||+|+.|.| ++++++||.+||++|++++||||++|||+++|++|++++|+.+|++|+|++|++|||||++++
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~ 85 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES 85 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCcc
Confidence 4678889999999999 999999999999999999999999999993211899999999999999999999999999886
No 9
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=9.7e-19 Score=136.94 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=75.0
Q ss_pred CCCCCCCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 7 SSTASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 7 ~~~~~~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
+....+.++|+|+|+|+|+.|.|++++++||.+||++|++.|||||++|||+| +|++++ +.+|++|+|++|++|+|
T Consensus 9 ~~~~~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~Ld-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 9 AGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLVPE-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBCCS-SSBHHHHCCCTTEEEEE
T ss_pred CCCCCCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeeCC-cCcHHHCCCCCCCEEEE
Confidence 34455678899999999999999999999999999999999999999999997 789995 45999999999999999
Q ss_pred EecCCCc
Q 042485 87 IGTVEDE 93 (332)
Q Consensus 87 ~gs~~~~ 93 (332)
|++++.+
T Consensus 85 v~~~~~~ 91 (95)
T 1v86_A 85 VGSTISG 91 (95)
T ss_dssp CCSSCCC
T ss_pred EeccccC
Confidence 9998763
No 10
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=133.16 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=71.1
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
+..++.++++|+|++|+|+|++++||.+||++|+++|||||++|||+|++ +|+ ++|+.+|++|+|++|++|+|+...-
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~-~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWK-TGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCS-SSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccC-CCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 34578899999999999999999999999999999999999999999877 677 7899999999999999999986554
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 84 ~ 84 (100)
T 2dzm_A 84 P 84 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.3e-16 Score=119.11 Aligned_cols=74 Identities=16% Similarity=0.333 Sum_probs=70.6
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+|+++|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|||++|++|+|++++
T Consensus 3 M~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6689999998899999999999999999999999999999999998 8999999999999999999999999876
No 12
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=124.32 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=70.5
Q ss_pred ceEEEEEEeCCeEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCc-ccccccCCCCCCceEEEE
Q 042485 14 EELTLTVKWSGKEYTVRVCGD-----DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD-TVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~-----~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d-~~~L~~~~i~~g~~l~l~ 87 (332)
.+|+|+|+|.|+.|.|+++++ .||.+||++|++.+|||+++|||+| +|+.|+| +.+|++|||++|++|+|+
T Consensus 6 ~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCeecCCCcccHHHCCCCCCCEEEEE
Confidence 479999999999999999985 9999999999999999999999998 8999987 668999999999999999
Q ss_pred ecCCC
Q 042485 88 GTVED 92 (332)
Q Consensus 88 gs~~~ 92 (332)
+++..
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 98765
No 13
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.8e-16 Score=121.38 Aligned_cols=76 Identities=33% Similarity=0.497 Sum_probs=71.3
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
-..+.+.++|+|+.+.+++++++||.+||++|++.+||||++|+|+| +|+.++|+.+|++|||++|++|+|+++++
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D~~tL~~~gi~~g~~l~l~~s~~ 85 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKVLVETSTLKQSDVGSGAKLMLMASQG 85 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEECCTTCBTTTTTCCTTEEEEEECCCC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 34677888899999999999999999999999999999999999998 89999999999999999999999999874
No 14
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.67 E-value=1.8e-16 Score=122.69 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.1
Q ss_pred CCCCCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEE
Q 042485 7 SSTASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMT 85 (332)
Q Consensus 7 ~~~~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~ 85 (332)
++++++...|.|+|| ++|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+
T Consensus 9 ~~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 9 SSGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLH 85 (91)
T ss_dssp --CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTCBTGGGTCCTTCEEE
T ss_pred cCCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeECCCcCcHHHCCCCCCCEEE
Confidence 344455678999999 68899999999999999999999999999999999998 89999999999999999999999
Q ss_pred EEec
Q 042485 86 MIGT 89 (332)
Q Consensus 86 l~gs 89 (332)
|+..
T Consensus 86 l~~r 89 (91)
T 3v6c_B 86 LVLR 89 (91)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9853
No 15
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.5e-17 Score=125.33 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=68.3
Q ss_pred eEEEEEEe-CCeEEEEEe--cCCCCHHHHHHHH-HHHhCCCCCCceEeeccCCCcccCcccccccCCC-CCCceEEEEec
Q 042485 15 ELTLTVKW-SGKEYTVRV--CGDDSVAELKRRI-CELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPL-KSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v--~~~~tV~~LK~~I-~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i-~~g~~l~l~gs 89 (332)
||+|+||. .|++++|++ ++++||.+||++| ++.+|+|+++|||+| +|++|+|+.+|++|+| ++|++|+|+||
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 47899995 677788765 4999999999999 999999999999998 8999999999999999 69999999999
Q ss_pred CCC
Q 042485 90 VED 92 (332)
Q Consensus 90 ~~~ 92 (332)
+.-
T Consensus 78 ~~~ 80 (87)
T 2lxa_A 78 PNL 80 (87)
T ss_dssp CCC
T ss_pred CCc
Confidence 864
No 16
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.65 E-value=2.6e-16 Score=121.49 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=68.2
Q ss_pred CCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 10 ASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 10 ~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+..+.+|.|+|| ..|+++.|++++++||++||++|++++|+||++|+|+| +|++++|+.+|++|+|++|++|.|-
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEEccCcCCHHHcCCCCCCEEEEE
Confidence 445678999999 68999999999999999999999999999999999998 8999999999999999999999874
No 17
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=2e-16 Score=120.91 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=69.1
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc-cCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL-ADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~-l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
-|+|+|+ ++|+.+.+++++++||++||++|++.+|||+++|+|+| +|+. ++|+.+|++|||++|++|+|+++|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 5889998 78999999999999999999999999999999999998 8999 999999999999999999999864
No 18
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.9e-16 Score=122.63 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
...+|+|+||- .|+++.|+|++++||++||++|++.+|+|+++|+|+| +|++++|+.+|++|||++|++|+|.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEECCCCCCHHHcCCCCCCEEEEE
Confidence 44569999994 5899999999999999999999999999999999998 8999999999999999999999985
No 19
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.6e-16 Score=125.56 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=68.3
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
||+|+||+ +|+.+.|+|++++||.+||++|++.+|||+++|+|+| +|+.|+|+.+|++|||++|++|+|+++...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 47899995 8999999999999999999999999999999999998 899999999999999999999999998765
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.64 E-value=8.3e-16 Score=117.74 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 10 ASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 10 ~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..+...|.|+|+ +.|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|+|++|++|+|+.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 334567899999 58899999999999999999999999999999999998 89999999999999999999999985
Q ss_pred cC
Q 042485 89 TV 90 (332)
Q Consensus 89 s~ 90 (332)
..
T Consensus 84 rl 85 (88)
T 3dbh_I 84 RL 85 (88)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=115.65 Aligned_cols=75 Identities=31% Similarity=0.421 Sum_probs=69.0
Q ss_pred CceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 13 SEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 13 ~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+..|+|+|+ +.|+.+.+++++++||++||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|++.+
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 346888888 57889999999999999999999999999999999998 8999999999999999999999998754
No 22
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-16 Score=125.88 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=69.2
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
..|.|+|+|+++|+.+.+++++++||++||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+.+.
T Consensus 25 ~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 25 GAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ----CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 567899999999999999999999999999999999999999999998 8999999999999999999999999764
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.63 E-value=5e-16 Score=122.07 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=68.1
Q ss_pred CceEEEEEEe-CCeEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCceEeeccCCCcccCcccccccCCC-CCCceEEEE
Q 042485 13 SEELTLTVKW-SGKEYTV--RVCGDDSVAELKRRI-CELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPL-KSSLKMTMI 87 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i--~v~~~~tV~~LK~~I-~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i-~~g~~l~l~ 87 (332)
...|+|+||. +|++|++ ++++++||++||++| ++.+|+|+++|||+| +|++|+|+.+|++|+| ++|++|+||
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEECcCcCCHHHcCcCCCCCEEEEE
Confidence 4568999995 6777776 567999999999999 889999999999998 8999999999999999 999999999
Q ss_pred ecCC
Q 042485 88 GTVE 91 (332)
Q Consensus 88 gs~~ 91 (332)
+++.
T Consensus 94 vskp 97 (98)
T 4a20_A 94 IKPN 97 (98)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9863
No 24
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.8e-16 Score=121.26 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=69.0
Q ss_pred CCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 10 ASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 10 ~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
...+..|+|+|| +.|+.+.|+|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 334567999999 68899999999999999999999999999999999998 89999999999999999999999986
Q ss_pred cC
Q 042485 89 TV 90 (332)
Q Consensus 89 s~ 90 (332)
..
T Consensus 94 rl 95 (98)
T 4hcn_B 94 RL 95 (98)
T ss_dssp BC
T ss_pred ec
Confidence 53
No 25
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=3.4e-15 Score=118.89 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCCCCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 8 STASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 8 ~~~~~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+....+.+|+|+|++.+.++.|+|++++||.+||++|++.+|||+++|+|+| +|+.|+|+.+|++|+|++|++|+|+
T Consensus 10 ~~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 10 APVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp SCCCCSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCCcCcHHHcCCCCCCEEEEE
Confidence 3333466899999976556899999999999999999999999999999998 8999999999999999999999999
Q ss_pred ecCCC
Q 042485 88 GTVED 92 (332)
Q Consensus 88 gs~~~ 92 (332)
.....
T Consensus 87 ~~~~~ 91 (106)
T 1wx7_A 87 IKRQH 91 (106)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 86654
No 26
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=1.8e-15 Score=115.21 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=69.3
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHH---hCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICEL---TNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~---tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+++|+|+|++ .|+.+.+++++++||.+||++|++. +|+|+++|+|+| +|+.++|+.+|++|||++|++|+|+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 4678999997 5889999999999999999999998 999999999998 89999999999999999999999998
Q ss_pred cCC
Q 042485 89 TVE 91 (332)
Q Consensus 89 s~~ 91 (332)
++.
T Consensus 80 ~~~ 82 (85)
T 2wyq_A 80 TKT 82 (85)
T ss_dssp C--
T ss_pred cCC
Confidence 764
No 27
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.7e-15 Score=118.34 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
++.+|+|+|++.|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+....
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 456899999988999999999999999999999999999999999998 89999999999999999999999987654
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 91 ~ 91 (96)
T 1wx8_A 91 S 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 28
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=4.2e-15 Score=121.96 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
...|+|+||+.|+.+.|+|++++||.+||++|++.+|||+++|+|+| +|+.|+|+.+|++|||++|++|+|+.....
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 35699999977889999999999999999999999999999999998 899999999999999999999999987755
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=113.31 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=67.9
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.|.|+||+ +|+.+.+++++++||.+||++|++.+||||++|+|+| +|+.++|+.+|++|||++|++|+|+..
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 57899996 7899999999999999999999999999999999998 899999999999999999999999864
No 30
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=3.8e-15 Score=116.26 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=69.1
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHH---hCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICEL---TNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~---tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|+|+||+ .|+.+.+++++++||.+||++|++. +|||+++|+|+| +|+.++|+.+|++|||++|++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 5789997 5889999999999999999999999 899999999998 89999999999999999999999998775
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 78 ~ 78 (95)
T 1uel_A 78 K 78 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.6e-15 Score=119.61 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=72.1
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+.+.|+|+||+ .|+.+.++|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+.+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 34679999996 6899999999999999999999999999999999998 8999999999999999999999999876
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
..
T Consensus 97 ~~ 98 (106)
T 1ttn_A 97 PV 98 (106)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 32
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.60 E-value=2.3e-15 Score=115.92 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=68.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|.|+|| +.|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 568899 68999999999999999999999999999999999998 899999999999999999999999976554
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=114.67 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=67.4
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.+..|.|+||+ +|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++||| +|++|+|+.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 34578999997 6889999999999999999999999999999999998 8999999999999999 899999873
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=5.3e-15 Score=115.35 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcc-cccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDT-VLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~-~~L~~~~i~~g~~l~l~gs~ 90 (332)
....|.|+||+.+.++.++|++++||.+||++|++.+|||+++|+|+| +|++|+|+ .+|++|||++|++|+|+...
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 455689999987668999999999999999999999999999999998 89999999 99999999999999999766
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
.+
T Consensus 89 ~g 90 (94)
T 2kan_A 89 IN 90 (94)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=115.71 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=68.9
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.+|+|+|++ .|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 368899996 5889999999999999999999999999999999998 899999999999999999999999987654
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=116.87 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCCCCCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 8 STASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 8 ~~~~~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+.......|+|+||+ |+.+.++|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+
T Consensus 12 ~~~~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 12 SGLVPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAPLEDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp --------CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEECCTTSBHHHHTCCSSCEEEEE
T ss_pred cCCCCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 334455578899999 889999999999999999999999999999999998 8999999999999999999999998
Q ss_pred ecC
Q 042485 88 GTV 90 (332)
Q Consensus 88 gs~ 90 (332)
...
T Consensus 88 ~rl 90 (93)
T 2l7r_A 88 GRM 90 (93)
T ss_dssp CCC
T ss_pred Eec
Confidence 643
No 37
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-15 Score=116.37 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=70.8
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
+..|+|+|++.|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 45689999987889999999999999999999999999999999998 89999999999999999999999998654
No 38
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=4.7e-15 Score=117.35 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=66.4
Q ss_pred eEEEEEEe--CC---eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcc-cccccCCCCCCceEEEEe
Q 042485 15 ELTLTVKW--SG---KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDT-VLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 15 ~i~i~vk~--~g---~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~-~~L~~~~i~~g~~l~l~g 88 (332)
+|+|+|++ ++ +.+.|+|++++||.+||++|++.+|||+++|+|+| +|+.++|+ .+|++|||++|++|+|+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 35566664 44 78999999999999999999999999999999998 89999877 699999999999999998
Q ss_pred cCCC
Q 042485 89 TVED 92 (332)
Q Consensus 89 s~~~ 92 (332)
...+
T Consensus 84 ~~~g 87 (102)
T 1v5o_A 84 KDNV 87 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7655
No 39
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=1e-14 Score=111.52 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
++..|+|+|++ .|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 34578899996 6889999999999999999999999999999999998 8999999999999999999999999765
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
.+
T Consensus 81 ~G 82 (87)
T 1wh3_A 81 GS 82 (87)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 40
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.57 E-value=8.2e-15 Score=112.94 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=70.2
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
+.+|+|+||+ .|+.+.++|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+| +|++|+|+....
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 4578999997 6899999999999999999999999999999999998 8999999999999999 899999998654
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 79 ~ 79 (90)
T 4dwf_A 79 P 79 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=9e-15 Score=118.07 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=68.8
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCC-------CCceEEE
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLK-------SSLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~-------~g~~l~l 86 (332)
|.|-|++++++.++.+++.+++||.+||++|++.+||||++|+|+| +|++|+|+.+|++|||+ .+++|+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~---~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK---DDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 5677888887778999999999999999999999999999999998 99999999999999999 7999999
Q ss_pred EecC
Q 042485 87 IGTV 90 (332)
Q Consensus 87 ~gs~ 90 (332)
+...
T Consensus 78 ~lr~ 81 (118)
T 2fnj_B 78 AFRA 81 (118)
T ss_dssp EEBS
T ss_pred EecC
Confidence 9874
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=9.9e-15 Score=115.12 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
.+.+|+|+|++.+.++.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 456799999976556899999999999999999999999999999998 89999999999999999999999998764
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 96 ~ 96 (100)
T 1yqb_A 96 H 96 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=9.4e-15 Score=114.74 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=66.1
Q ss_pred eEEEEEEe-C----CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 15 ELTLTVKW-S----GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk~-~----g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
+.+|.|+. + +++++|+|++++||.+||++|++.+||||++||||| +||+|+|+.+|++|+|++|++||+|-.
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 44666663 3 568999999999999999999999999999999998 899999999999999999999988854
Q ss_pred CCC
Q 042485 90 VED 92 (332)
Q Consensus 90 ~~~ 92 (332)
...
T Consensus 92 rg~ 94 (100)
T 1wju_A 92 KQS 94 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.56 E-value=1.5e-14 Score=116.26 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=70.5
Q ss_pred CCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+.+.|+|+|| +.|+.+.|++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 3457999999 68899999999999999999999999999999999998 8999999999999999999999998643
No 45
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=8.5e-15 Score=112.68 Aligned_cols=73 Identities=25% Similarity=0.459 Sum_probs=66.3
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.|.|+ ++|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 567777 78999999999999999999999999999999999998 89999999999999999999999987543
No 46
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.2e-14 Score=110.23 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=68.0
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+|+|+|+. .|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 58899995 6889999999999999999999999999999999998 8999999999999999999999998543
No 47
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=9.8e-15 Score=116.51 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCCCCCceEEEEEEeCCe----EEEEEecC---------CCCHHHHHHHHHHHh--CCCCCC-ceEeeccCCCcccCcc
Q 042485 7 SSTASSSEELTLTVKWSGK----EYTVRVCG---------DDSVAELKRRICELT--NVLPKR-QKLLYPKIGNKLADDT 70 (332)
Q Consensus 7 ~~~~~~~~~i~i~vk~~g~----~~~i~v~~---------~~tV~~LK~~I~~~t--gvp~~~-QkLl~~k~~gk~l~d~ 70 (332)
.++.++...|+|+||+.+. .+.|++++ ++||.+||++|++.+ |||+++ |+|+| +|+.|+|+
T Consensus 4 ~~~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~L~D~ 80 (107)
T 1x1m_A 4 GSSGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRKLKDD 80 (107)
T ss_dssp CSCCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEECCTT
T ss_pred CCCCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeECCCC
Confidence 3444555668899998654 89999554 599999999999999 999999 99998 89999999
Q ss_pred cccccCCCCCCceEEEEecCCC
Q 042485 71 VLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 71 ~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.+|++|||++|++|+|+.+...
T Consensus 81 ~tL~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 81 QTLDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp CBHHHHTCCTTCEEEEEESSCC
T ss_pred CcHHHcCCCCCCEEEEEeCCCC
Confidence 9999999999999999987643
No 48
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=7.7e-15 Score=111.49 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=67.4
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+|+|+|+ ..|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 5788999 57889999999999999999999999999999999998 8999999999999999999999998543
No 49
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.55 E-value=1.4e-14 Score=107.37 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=67.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|+|+|++ .|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|||++|++|+|+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5789996 6889999999999999999999999999999999998 8999999999999999999999998643
No 50
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=125.11 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 10 ASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 10 ~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..+...|.|+|| ++|+.+.++|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+.
T Consensus 15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCccccccCCHhHcCCcccceeeeee
Confidence 344567899999 88999999999999999999999999999999999998 89999999999999999999999998
Q ss_pred cCCCc
Q 042485 89 TVEDE 93 (332)
Q Consensus 89 s~~~~ 93 (332)
...+.
T Consensus 92 ~~~gg 96 (172)
T 3u30_A 92 RLRGG 96 (172)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 76543
No 51
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.1e-14 Score=113.12 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=67.0
Q ss_pred ceEEEEEEeC-Ce--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCceEeeccCCCcccCcccccccC--CCCCCceEEE
Q 042485 14 EELTLTVKWS-GK--EYTVRVCGDDSVAELKRRICELT--NVLPKRQKLLYPKIGNKLADDTVLLSQL--PLKSSLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk~~-g~--~~~i~v~~~~tV~~LK~~I~~~t--gvp~~~QkLl~~k~~gk~l~d~~~L~~~--~i~~g~~l~l 86 (332)
..|+|+||+. |+ .+.|++++++||.+||++|++.+ |+|+++|||+| +|++|+|+.+|++| +|++|++|+|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~L~D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKLLLDHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEECcCcCCHHHHhcCCCCCCEEEE
Confidence 4688999974 44 46677789999999999999999 99999999998 89999999999999 9999999999
Q ss_pred EecCCC
Q 042485 87 IGTVED 92 (332)
Q Consensus 87 ~gs~~~ 92 (332)
+...-+
T Consensus 83 v~~~~g 88 (93)
T 1wgd_A 83 VCNVKS 88 (93)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 975543
No 52
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.6e-14 Score=108.20 Aligned_cols=73 Identities=26% Similarity=0.356 Sum_probs=66.5
Q ss_pred eEEEEEEe-CCeE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVKW-SGKE-YTVR-VCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk~-~g~~-~~i~-v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.|.|+|++ .|+. +.++ +++++||.+||++|++.+|||+++|+|++ +|+.++|+.+|++|||++|++|+|+..+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 47889996 5777 4899 99999999999999999999999999998 8999999999999999999999998643
No 53
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=3e-14 Score=109.47 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=69.0
Q ss_pred ceEEEEEEe-CC-eEEEE-EecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVKW-SG-KEYTV-RVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk~-~g-~~~~i-~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.+|.|+|++ .| +.+.+ ++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 468899996 57 68999 599999999999999999999999999998 8999999999999999999999999765
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
.+
T Consensus 83 ~g 84 (89)
T 1wy8_A 83 DS 84 (89)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 54
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.54 E-value=2.5e-14 Score=106.05 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=67.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|+|+|+. .|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|||++|++|+|+...
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5788996 6888999999999999999999999999999999998 8999999999999999999999998654
No 55
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.54 E-value=4.5e-14 Score=113.60 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=76.0
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCC-------CceEEE
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKS-------SLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~-------g~~l~l 86 (332)
|.+=|.|+.++.++.+++.+++||.+||++|+..+||||++|+|+| +|++|+|+.+|++|||++ +++|+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 4456778888888999999999999999999999999999999998 999999999999999999 999999
Q ss_pred EecCCC---ccc----cCCCCCCccccc
Q 042485 87 IGTVED---EII----VDPVDSPEIIDD 107 (332)
Q Consensus 87 ~gs~~~---~~~----~~~~~~~~~~~d 107 (332)
+-...+ ++. +.|++.|+++.-
T Consensus 78 vlr~~~~fE~l~i~p~s~pp~lp~~~~~ 105 (118)
T 4ajy_B 78 AFRADDTFEALCIEPFSSPPELPDVMKP 105 (118)
T ss_dssp EECCSSCCCCCCBCCCCCCCCCCGGGCC
T ss_pred EEecCCCccceEEecCCCCCCccccccc
Confidence 965432 222 245566666643
No 56
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.8e-14 Score=112.91 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCCCCceEEEEEE-e-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 9 TASSSEELTLTVK-W-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 9 ~~~~~~~i~i~vk-~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
+++.+..++|+|+ . .|++++++++++.||++||++|++..++|+++|+|+| +||.++|+.+|++|||++|.+|+|
T Consensus 9 ~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKiLKD~eTL~~~gIk~g~TIhL 85 (118)
T 2daf_A 9 ESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKILKNNETLVQHGVKPQEIVQV 85 (118)
T ss_dssp CCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEEECSSCCHHHHSCCSSCEEEE
T ss_pred hcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeEcCCcchHHHcCCCCCCEEEE
Confidence 4445667888887 3 5778999999999999999999999999999999999 999999999999999999999999
Q ss_pred EecCC
Q 042485 87 IGTVE 91 (332)
Q Consensus 87 ~gs~~ 91 (332)
+-...
T Consensus 86 vi~s~ 90 (118)
T 2daf_A 86 EIFST 90 (118)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 87553
No 57
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.52 E-value=3.1e-14 Score=110.94 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=68.6
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|.|+|+. .|+.+.|++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+....+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 6788994 7899999999999999999999999999999999998 899999999999999999999999976544
No 58
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.51 E-value=4.9e-14 Score=110.46 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=68.5
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|+|+|++ .|+.+.+++++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+....+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 5788997 6888999999999999999999999999999999998 899999999999999999999999977543
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=111.16 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+.+.|+|+|++ .|+.+.+++++++||.+||++|++.+|+|+++|+|++ +|+.++|+.+|++|||++|++|+|+...
T Consensus 32 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp GSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45679999996 6889999999999999999999999999999999998 8999999999999999999999998654
No 60
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1.3e-13 Score=107.59 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred CceEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc----cCcccccccCCCCCCceEEE
Q 042485 13 SEELTLTVKWSGK--EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL----ADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 13 ~~~i~i~vk~~g~--~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~----l~d~~~L~~~~i~~g~~l~l 86 (332)
.+.|+|+|++++. .+++++++++||.+||++|+..+||||++|+|++....|+. ++|+.+|++|||++|++|+|
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 3459999999876 68999999999999999999999999999999972101353 58899999999999999999
Q ss_pred EecCC
Q 042485 87 IGTVE 91 (332)
Q Consensus 87 ~gs~~ 91 (332)
+.+..
T Consensus 85 ~d~~P 89 (95)
T 1v6e_A 85 IDHSG 89 (95)
T ss_dssp BCCSC
T ss_pred EECCc
Confidence 87543
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.3e-14 Score=112.11 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=70.1
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.+.|.|+ +.|+.+.+++++++||.+||++|++.+|||+++|+|++ +|+.++|+.+|++|||++|++|+|+....+
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 4678888 78999999999999999999999999999999999998 899999999999999999999999987655
No 62
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=113.23 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCCCCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCceEeeccCCCcccCcccccccCCC
Q 042485 8 STASSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICE------LTNV--LPKRQKLLYPKIGNKLADDTVLLSQLPL 78 (332)
Q Consensus 8 ~~~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~------~tgv--p~~~QkLl~~k~~gk~l~d~~~L~~~~i 78 (332)
++..+.++|.|+|| ..|+++++++++++||++||++|++ .+|+ ++++|+||| +||+|+|+.+|++|+|
T Consensus 10 ~~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~LeD~~TL~~y~I 86 (125)
T 2gow_A 10 SSNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHGNVTLGALKL 86 (125)
T ss_dssp CCSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEEESSCBTGGGCC
T ss_pred ccCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCCCCCCcHHHcCC
Confidence 34445778999999 5789999999999999999999999 7888 499999999 9999999999999999
Q ss_pred CCCc--eEEEEecCC
Q 042485 79 KSSL--KMTMIGTVE 91 (332)
Q Consensus 79 ~~g~--~l~l~gs~~ 91 (332)
++|+ +|+|+....
T Consensus 87 ~~~~~~tlhlv~r~~ 101 (125)
T 2gow_A 87 PFGKTTVMHLVARET 101 (125)
T ss_dssp CTTSEEEEEEEECSC
T ss_pred CCCCceEEEEEecCC
Confidence 9877 566665443
No 63
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=3.5e-13 Score=108.81 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCceEeeccCCCcccCcccccccCCCCCC
Q 042485 11 SSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICE------LTNV--LPKRQKLLYPKIGNKLADDTVLLSQLPLKSS 81 (332)
Q Consensus 11 ~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~------~tgv--p~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g 81 (332)
-+...|.|+|| ..|++++++|++++||.+||++|++ .+|+ |+++|+||| .||+|+|+.+|++|+|+.|
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEEECSSCBTTTTTCCSS
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcCCCCCCcHHHcCCCCC
Confidence 35567999999 5889999999999999999999999 6785 699999999 9999999999999999877
Q ss_pred --ceEEEEecCC
Q 042485 82 --LKMTMIGTVE 91 (332)
Q Consensus 82 --~~l~l~gs~~ 91 (332)
.+|||+....
T Consensus 89 ~~~tlhLvlr~~ 100 (116)
T 1wgh_A 89 KTTVMHLVARET 100 (116)
T ss_dssp CEEEEEEEECSS
T ss_pred CceEEEEEccCC
Confidence 4577765443
No 64
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.46 E-value=1.2e-13 Score=103.75 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=68.4
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.|+|+|+ ..|+.+.++|.+++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~L~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEeCCCCCHHHcCCCCCCEEEEEEec
Confidence 5889999 57889999999999999999999999999999999998 8999999999999999999999998654
No 65
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.46 E-value=6.1e-14 Score=110.34 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=62.5
Q ss_pred CCceEEEEEEe-CCe--EEEEEecCCCCHHHHHHHHHHH-hCCCC-CCceEeeccCCCcccCcccccccC--CCCCCceE
Q 042485 12 SSEELTLTVKW-SGK--EYTVRVCGDDSVAELKRRICEL-TNVLP-KRQKLLYPKIGNKLADDTVLLSQL--PLKSSLKM 84 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~--~~~i~v~~~~tV~~LK~~I~~~-tgvp~-~~QkLl~~k~~gk~l~d~~~L~~~--~i~~g~~l 84 (332)
++..|+|+||+ +|+ .++|++++++||.+||++|++. +|+|| ++|||+| +||+|+|+.+|++| +|++|++|
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEECCCCCCHHHHhcCCCCCCEE
Confidence 34569999996 455 5688999999999999999986 67665 9999998 89999999999999 99999999
Q ss_pred EEE
Q 042485 85 TMI 87 (332)
Q Consensus 85 ~l~ 87 (332)
+|+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=1.5e-13 Score=110.18 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=68.6
Q ss_pred ceEEEEEEe----CCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 14 EELTLTVKW----SGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 14 ~~i~i~vk~----~g~~~~i~v~~-~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..|+|+|+. .|+.+.+++++ ++||.+||++|++.+|||+++|+|+| +|++++|+.+|++|||++|++|+|+.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 358899996 57889999998 99999999999999999999999998 89999999999999999999999986
Q ss_pred cCC
Q 042485 89 TVE 91 (332)
Q Consensus 89 s~~ 91 (332)
...
T Consensus 103 r~~ 105 (111)
T 1we6_A 103 RER 105 (111)
T ss_dssp SSC
T ss_pred EcC
Confidence 543
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.46 E-value=1.3e-13 Score=117.31 Aligned_cols=76 Identities=26% Similarity=0.282 Sum_probs=68.3
Q ss_pred ceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+|| ++|+.+++++++++||.+||++|++.+||||++|+|++.+ +|+.++|+.+|++|||++|++|+|+.+.
T Consensus 1 m~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp --CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred CceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 35789999 7899999999999999999999999999999999999322 3889999999999999999999999983
No 68
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.45 E-value=3.7e-13 Score=105.08 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=65.1
Q ss_pred CCCceEEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCc----ccCcccccccCCCCCCce
Q 042485 11 SSSEELTLTVKWSG---KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNK----LADDTVLLSQLPLKSSLK 83 (332)
Q Consensus 11 ~~~~~i~i~vk~~g---~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk----~l~d~~~L~~~~i~~g~~ 83 (332)
.++..|+|.|+..+ ..+++++++++||++||++|+..+||||++|+|+|.- +|+ +++|+.+|++|||++|++
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCE
Confidence 45678999999743 3788999999999999999999999999999999721 144 348999999999999999
Q ss_pred EEEE
Q 042485 84 MTMI 87 (332)
Q Consensus 84 l~l~ 87 (332)
|+|+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 69
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=2.6e-13 Score=105.70 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=67.6
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcc-cccccCCCCCCceEEEEecC
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDT-VLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~-~~L~~~~i~~g~~l~l~gs~ 90 (332)
...|+|+||. .|+.+.++|++++||.+||++|++.+ +++|+|+| +|+.|+|+ .+|++|||++|++|+|+...
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 4568899995 68899999999999999999999998 99999998 89999998 99999999999999999876
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
..
T Consensus 79 ~~ 80 (95)
T 1wia_A 79 PG 80 (95)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 70
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.17 E-value=7e-15 Score=109.52 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=66.4
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|++ .|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|||++|++|+|+...
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 5688886 6888999999999999999999999999999999998 8999999999999999999999998654
No 71
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=5.9e-14 Score=111.35 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=67.3
Q ss_pred ceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------------CceEeeccCCCcccC-cccccccC
Q 042485 14 EELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPK---------------RQKLLYPKIGNKLAD-DTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~---------------~QkLl~~k~~gk~l~-d~~~L~~~ 76 (332)
..|+|+|+ ..|++++|+|++++||.+||++|++.+|+||+ +|+|+| .|+.|. |+.+|++|
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEKLTEDRKKLRDY 82 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCEECCSSSBHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcCccCCcCCHHHc
Confidence 45889998 78999999999999999999999999999995 459998 899885 67999999
Q ss_pred CCCCCceEEEEecCCC
Q 042485 77 PLKSSLKMTMIGTVED 92 (332)
Q Consensus 77 ~i~~g~~l~l~gs~~~ 92 (332)
||++|++|+||-...+
T Consensus 83 gI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp TCCSSEEEEEEECSCS
T ss_pred CCCCCCEEEEEehhcc
Confidence 9999999999975543
No 72
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.44 E-value=2e-13 Score=106.91 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred CCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+...|+|+|+ ..|+.+.++|.+++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 3456999999 57899999999999999999999999999999999998 8999999999999999999999998654
No 73
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=103.41 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=62.7
Q ss_pred CceEEEEEEe-CCeE--EEE-EecCCCCHHHHHHHHHHH-hCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 13 SEELTLTVKW-SGKE--YTV-RVCGDDSVAELKRRICEL-TNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~--~~i-~v~~~~tV~~LK~~I~~~-tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
..+|+|+|+. .|++ +.| +|++++||.+||++|++. .||||++|+|++.. +|+.|+|+.+|++|||++|++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~-~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP-KGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST-TSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC-CCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3358899994 5555 368 999999999999999995 89999999999633 599999999999999999999875
No 74
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.41 E-value=5e-13 Score=115.15 Aligned_cols=73 Identities=22% Similarity=0.411 Sum_probs=67.6
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.|+||. .|+.+.+++++++||.+||++|++.+|+||++|+|+| +|+.++|+.+|++|||++|++|+|+....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence 4688884 7899999999999999999999999999999999998 89999999999999999999999996543
No 75
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.40 E-value=4.9e-13 Score=116.90 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=69.7
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.|.|+||. .|+++.|+|++++||.+||++|++.+|||+++|+|++ +|++|+|+.+|++|+|++|++|+|+....+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 48899995 7899999999999999999999999999999999998 899999999999999999999999976543
No 76
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=8.9e-13 Score=103.23 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=65.5
Q ss_pred CCceEEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCC---cc----cCcccccccCCCCCC
Q 042485 12 SSEELTLTVKWSG---KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGN---KL----ADDTVLLSQLPLKSS 81 (332)
Q Consensus 12 ~~~~i~i~vk~~g---~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~g---k~----l~d~~~L~~~~i~~g 81 (332)
.+..++|.|+++. ..++++++++.||++||++|+..+||||++|+|++ .| +. ++|+.+|++|+|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~---~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL---YDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE---ECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE---ecCCCcccceecCCcCCHHHCCCCCC
Confidence 3557889999743 36889999999999999999999999999999997 34 43 588899999999999
Q ss_pred ceEEEEecC
Q 042485 82 LKMTMIGTV 90 (332)
Q Consensus 82 ~~l~l~gs~ 90 (332)
++|+|+.+.
T Consensus 88 ~~Ihlvd~~ 96 (97)
T 2kj6_A 88 FRLHIIDLD 96 (97)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998753
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.40 E-value=6.8e-13 Score=107.11 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=67.2
Q ss_pred eEEEEEEe-----------CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCce
Q 042485 15 ELTLTVKW-----------SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLK 83 (332)
Q Consensus 15 ~i~i~vk~-----------~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~ 83 (332)
.|+|.|+. .|+.+.++|++++||.+||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++
T Consensus 25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEEECTTSBHHHHTCCSSCE
T ss_pred CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEECCCCCCHHHCCCCCCCE
Confidence 57788885 3678999999999999999999999999999999998 899999999999999999999
Q ss_pred EEEEecCC
Q 042485 84 MTMIGTVE 91 (332)
Q Consensus 84 l~l~gs~~ 91 (332)
|+|+....
T Consensus 102 i~lv~rl~ 109 (115)
T 1we7_A 102 IHLALKER 109 (115)
T ss_dssp EEEEECCC
T ss_pred EEEEEEcC
Confidence 99986543
No 78
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=8.1e-13 Score=101.23 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=64.8
Q ss_pred eEEEEEEeC---CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc----CCCcccCcccccccCCCCCCceEEEE
Q 042485 15 ELTLTVKWS---GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK----IGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk~~---g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k----~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.++|.|.++ ...+.+.++++.||.+||++|+..+||||++|+|++.. +.|++++|+.+|++|||++|++|+|+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 577888864 34568899999999999999999999999999999621 13788999999999999999999998
Q ss_pred ecC
Q 042485 88 GTV 90 (332)
Q Consensus 88 gs~ 90 (332)
-+.
T Consensus 82 d~~ 84 (86)
T 4b6w_A 82 DLQ 84 (86)
T ss_dssp ECC
T ss_pred eCC
Confidence 543
No 79
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.40 E-value=1.3e-12 Score=103.35 Aligned_cols=73 Identities=21% Similarity=0.112 Sum_probs=65.1
Q ss_pred CceEEEEEEe-C--CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCC-CCCceEEEEe
Q 042485 13 SEELTLTVKW-S--GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPL-KSSLKMTMIG 88 (332)
Q Consensus 13 ~~~i~i~vk~-~--g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i-~~g~~l~l~g 88 (332)
+-.+.|+|+- . +..+++++++++||++||++|++..|+||++|||++ +|++++|+.+|++||| ++|++++|+.
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~---ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI---GQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec---cCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 3357888884 3 378899999999999999999999999999999998 8999999999999999 5999999874
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.39 E-value=7.8e-13 Score=110.96 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=69.3
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCCc
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDE 93 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~~ 93 (332)
|+|+|+. .|+.+.+++++++||.+||++|++.+|+|+++|+|++ +|+.++|+.+|++|||++|++|+|+....+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 5788984 7889999999999999999999999999999999998 8999999999999999999999999876553
No 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.39 E-value=1.1e-12 Score=111.42 Aligned_cols=74 Identities=26% Similarity=0.262 Sum_probs=68.7
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
..|.|+|+. .|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|+|++|++|+|+...
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLEDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 357888995 6899999999999999999999999999999999998 8999999999999999999999999654
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=105.79 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=65.8
Q ss_pred eEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc----cCcccccccCCCCCCceEEEEe
Q 042485 15 ELTLTVKWSGK--EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL----ADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 15 ~i~i~vk~~g~--~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~----l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.|+|.|++++. .++++++++.||++||++|+..+||||++|+|++....|+. ++|+.+|++|||.+|++|+|+.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 79999998776 68899999999999999999999999999999972101242 4788999999999999999997
Q ss_pred cCC
Q 042485 89 TVE 91 (332)
Q Consensus 89 s~~ 91 (332)
+..
T Consensus 86 ~~p 88 (122)
T 1t0y_A 86 VTG 88 (122)
T ss_dssp CTT
T ss_pred CCC
Confidence 553
No 83
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.37 E-value=4.5e-14 Score=116.23 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|.|+|+. .|+++.++|++++||.+||++|++.+||||++|+|+| +|+.++|+.+|++|||++|++|+|+....+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEECCCCCchhhhccCCCCEEEEEEEcCC
Confidence 4678885 6889999999999999999999999999999999998 899999999999999999999999976654
No 84
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.34 E-value=2.8e-12 Score=98.12 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=64.5
Q ss_pred EEEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC---cccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVKWSGKEYTVR-VCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD---DTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk~~g~~~~i~-v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~---d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.|+|++.+..+.|+ +++++||.+||++|++.+|||+++|+|++-. .++.++ |+.+|+++||++|++|+|..+..
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~ 79 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPECLDLSDRDITLGDLPIQSGDMLIVEEDQT 79 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCCCCCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcccccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence 468999877777788 9999999999999999999999999999721 356663 67899999999999999987653
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 80 ~ 80 (86)
T 2kzr_A 80 R 80 (86)
T ss_dssp S
T ss_pred C
Confidence 3
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.31 E-value=5.6e-12 Score=105.69 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=67.7
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.+.|+|+ ..|+.+.+++++++||.+||++|++.+|+|+++|+|+| +|+.++|+.+|++|||++|++|+|+...
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 3678888 57889999999999999999999999999999999998 8999999999999999999999998754
No 86
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.31 E-value=1.7e-13 Score=116.02 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|.|+|++ +|+.+.|+|++++||.+||++|++.+|||+++|+|++ +|++|+|+.+|+++||++|++|+|+....+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 5678885 6889999999999999999999999999999999998 899999999999999999999999865543
No 87
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=109.02 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=66.6
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.+.|.|+ +.|+.+.+++++++||.+||++|+..+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+..
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 3667788 78999999999999999999999999999999999998 899999999999999999999999864
No 88
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.29 E-value=7e-12 Score=102.26 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCceEEEEEE-eCCeEE-EEEecCCCCHHHHHHHH-----HHHhCCCC--CCceEeeccCCCcccCcccccccCCCCCC-
Q 042485 12 SSEELTLTVK-WSGKEY-TVRVCGDDSVAELKRRI-----CELTNVLP--KRQKLLYPKIGNKLADDTVLLSQLPLKSS- 81 (332)
Q Consensus 12 ~~~~i~i~vk-~~g~~~-~i~v~~~~tV~~LK~~I-----~~~tgvp~--~~QkLl~~k~~gk~l~d~~~L~~~~i~~g- 81 (332)
-...|.|+|+ ..|+.+ ++++++++||.+||++| ++..|+|+ ++||||| +||+|+|+.+|++|+|+.|
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKVLENSKTVKDYRSPVSN 89 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEECCTTSBGGGGSCCTTS
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeECcCCCcHHHcCCCcCC
Confidence 4468999999 577677 79999999999999999 45678997 8999999 9999999999999999998
Q ss_pred -----ceEEEEecCC
Q 042485 82 -----LKMTMIGTVE 91 (332)
Q Consensus 82 -----~~l~l~gs~~ 91 (332)
.+++|+....
T Consensus 90 ~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 90 LAGAVTTMHVIIQAP 104 (126)
T ss_dssp CTTCCEEEEEEECCC
T ss_pred ccCCcEEEEEEeccC
Confidence 5677765543
No 89
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.28 E-value=1.4e-11 Score=98.20 Aligned_cols=74 Identities=22% Similarity=0.118 Sum_probs=63.4
Q ss_pred EEEEEEeCCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCceEeeccCCCc-----------c----cCcccccccCCCC
Q 042485 16 LTLTVKWSGKEYTVRVC-GDDSVAELKRRICELTNVLPKRQKLLYPKIGNK-----------L----ADDTVLLSQLPLK 79 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~-~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk-----------~----l~d~~~L~~~~i~ 79 (332)
|.|+|+....++.|+|+ +++||.+||++|++.+|||+++|+|++ .|+ . ++|+.+|++|||+
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~---~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST---NRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS---SGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE---CCccccccCccccccccccCCCCCCHHHCCCC
Confidence 66899865445689999 999999999999999999999999985 455 3 5788999999999
Q ss_pred CCceEEEEecCCC
Q 042485 80 SSLKMTMIGTVED 92 (332)
Q Consensus 80 ~g~~l~l~gs~~~ 92 (332)
+|++|+|+-..+.
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999866554
No 90
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.27 E-value=1.1e-11 Score=115.78 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=68.4
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
...|+|+||+ .|+.+.++|++++||.+||++|++.+|||+++|+|++ +|++|+|+.+|++|+|++|++|+|+..
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 4568899996 6889999999999999999999999999999999998 899999999999999999999999853
No 91
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.26 E-value=8.5e-12 Score=119.62 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=67.9
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHH---HhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICE---LTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~---~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..+|+|+||+ .|++|.|+|++++||.+||++|+. .+|||+++|||+| +||.|+|+.+|++|||++|++|++|+
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~L~D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSDDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCeecCCcCCHHHcCCCCCCEEEEEE
Confidence 3468899997 589999999999999999999999 6889999999998 89999999999999999999997676
Q ss_pred cCC
Q 042485 89 TVE 91 (332)
Q Consensus 89 s~~ 91 (332)
+..
T Consensus 82 ~k~ 84 (368)
T 1oqy_A 82 TKT 84 (368)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 92
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=6.6e-10 Score=86.70 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCCceEEEEEEe----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc--CCCc---ccCcccccccCCCCC
Q 042485 10 ASSSEELTLTVKW----SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK--IGNK---LADDTVLLSQLPLKS 80 (332)
Q Consensus 10 ~~~~~~i~i~vk~----~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k--~~gk---~l~d~~~L~~~~i~~ 80 (332)
+....+++|+|++ .|+.+.+.++.+.||++||++|+..||+|+.+|+|.+.. .++. +.+|..+|+.||+.+
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 3445678998885 466788999999999999999999999999999998631 0111 236788999999999
Q ss_pred CceEEEEecC
Q 042485 81 SLKMTMIGTV 90 (332)
Q Consensus 81 g~~l~l~gs~ 90 (332)
|++|+|.-+.
T Consensus 84 G~~I~V~d~~ 93 (97)
T 1wjn_A 84 GDCLLVRWSG 93 (97)
T ss_dssp TCEEEEECCS
T ss_pred CCEEEEEecC
Confidence 9999998643
No 93
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.99 E-value=4.1e-11 Score=104.30 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.|+|+ ..|++++|+|++++||.+||++|++.+||||++|+|+| +|++|+|+.+|+ +|++|+|+....
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeECCCCCccc-----CCCEEEEEEecC
Confidence 467888 57899999999999999999999999999999999998 899999999998 889999986543
No 94
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=5.8e-09 Score=80.96 Aligned_cols=76 Identities=12% Similarity=0.255 Sum_probs=69.2
Q ss_pred CceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
...|+|+|+ ..|+.+.+.|.+++++..|++++++..|+|+++|+|+| .|+.+.++.|++++++.+|++|.++-...
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 457899999 47888999999999999999999999999999999999 99999999999999999999999986543
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.88 E-value=9e-09 Score=77.26 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCceEEEEEEe-CCe-EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 12 SSEELTLTVKW-SGK-EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~-~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
....|+|.|+. .|+ .+.+.|..++++..|+++.++..|+++++|+|+| .|+.+.++.|.+++++.+|+.|.++|
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 34578999994 674 7899999999999999999999999999999999 99999999999999999999999886
No 96
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=2.2e-08 Score=77.23 Aligned_cols=77 Identities=12% Similarity=0.257 Sum_probs=69.2
Q ss_pred CCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
++..|+|+|+ ..|+.+.+.|..++++..|+++.++..|+++.+|+|+| .|+.+.++.|.+++++.+|+.|.++-..
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 3567999999 46888999999999999999999999999999999999 9999999999999999999999998654
Q ss_pred C
Q 042485 91 E 91 (332)
Q Consensus 91 ~ 91 (332)
.
T Consensus 79 ~ 79 (91)
T 2io0_B 79 T 79 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 97
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.80 E-value=2e-08 Score=73.89 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=64.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
|+|+|+ ..|+.+.+.+..++++..|+++.++..|+++.+|+++| .|+.+.++.|.+++++.+|+.|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 688888 46888999999999999999999999999999999999 9999999999999999999999876
No 98
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.73 E-value=4.5e-08 Score=75.74 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+...|+|+|+. .|+.+.+.|..++++..|+++.++..|+++++|+|+| .|+.+.++.|..+|++.+|+.|.++-..
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 35679999994 6778889999999999999999999999999999999 9999999999999999999999988543
No 99
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=1.3e-07 Score=74.60 Aligned_cols=75 Identities=12% Similarity=0.253 Sum_probs=68.4
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
...|+|+|+. .|+.+.+.|..++++..|++++++..|+++.+|+|+| .|+.+.++.|..+|++.+|+.|.++-..
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES---SSSBCCTTSCTTTTTCCTTEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 3568999994 6788899999999999999999999999999999998 8999999999999999999999988543
No 100
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=98.65 E-value=3.9e-09 Score=91.89 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=68.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.+++ ++.++|.|++...++..+++.+|+... +..++. .... ...||-+.+|..
T Consensus 84 ~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~~~----fd~~~~--------~~~~--~~~KP~p~~~~~a 149 (216)
T 3kbb_A 84 KENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKY----FDVMVF--------GDQV--KNGKPDPEIYLLV 149 (216)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGG----CSEEEC--------GGGS--SSCTTSTHHHHHH
T ss_pred ccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCCcc----cccccc--------cccc--CCCcccHHHHHHH
Confidence 478999999999987 799999999999999999998887421 112211 1111 234887777654
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
.-+ .++++||+|+|++.........|+.
T Consensus 150 ~~~lg-~~p~e~l~VgDs~~Di~aA~~aG~~ 179 (216)
T 3kbb_A 150 LERLN-VVPEKVVVFEDSKSGVEAAKSAGIE 179 (216)
T ss_dssp HHHHT-CCGGGEEEEECSHHHHHHHHHTTCC
T ss_pred HHhhC-CCccceEEEecCHHHHHHHHHcCCc
Confidence 124 4899999999999888887778875
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.65 E-value=1.8e-07 Score=74.00 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=68.8
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+...|+|.|+..|+.+.+.|..++++..|+++.++..|+++.+|+|+| .|+.+.++.|..+|++.+|++|.++-..
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 345688888876778889999999999999999999999999999999 9999999999999999999999988643
No 102
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.64 E-value=1.2e-07 Score=75.65 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=70.4
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+...|+|+|+. .|+.+.+.|..++++..|+++.++..|+++.+|+|+| .|+.+.++.|..+|++.+|++|.++-..
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF---DGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES---SSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 34569999995 6778899999999999999999999999999999998 8999999999999999999999998765
Q ss_pred CC
Q 042485 91 ED 92 (332)
Q Consensus 91 ~~ 92 (332)
.+
T Consensus 100 ~G 101 (110)
T 2k8h_A 100 TG 101 (110)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 103
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=98.63 E-value=3.4e-08 Score=84.95 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=80.9
Q ss_pred cceEEEecCCceEeccCCC-----------------CCCceecCCcHHHHHHHHHh-CCcEEEEcCCc-HHHHHHHHHHh
Q 042485 147 KKLLVLDIDYTLFDHRSTA-----------------ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS-MKWVELKMEEL 207 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~-----------------~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~-~~ya~~~l~~l 207 (332)
.++++|||||||+...... ........|++.++|+.|.+ ++.++|.|++. ..++..+++.+
T Consensus 27 ~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~ 106 (187)
T 2wm8_A 27 PKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELF 106 (187)
T ss_dssp CSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHT
T ss_pred cCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHc
Confidence 5799999999998542110 01235678999999999997 69999999999 79999999988
Q ss_pred CCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 208 GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 208 ~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
++.. .+..++ +. . +. ....+..+..++ + .+++++++|+|++.........|+.+..+..
T Consensus 107 gl~~----~f~~~~-------~~-~--~~-k~~~~~~~~~~~-~-~~~~~~~~igD~~~Di~~a~~aG~~~i~v~~ 165 (187)
T 2wm8_A 107 DLFR----YFVHRE-------IY-P--GS-KITHFERLQQKT-G-IPFSQMIFFDDERRNIVDVSKLGVTCIHIQN 165 (187)
T ss_dssp TCTT----TEEEEE-------ES-S--SC-HHHHHHHHHHHH-C-CCGGGEEEEESCHHHHHHHHTTTCEEEECSS
T ss_pred CcHh----hcceeE-------EE-e--Cc-hHHHHHHHHHHc-C-CChHHEEEEeCCccChHHHHHcCCEEEEECC
Confidence 7741 111110 00 1 10 001111121112 4 4899999999999888887788988766543
No 104
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=98.61 E-value=5.8e-08 Score=83.16 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=87.0
Q ss_pred CCcceEEEecCCceEeccCC----CCCCceecCCcHHHHHHHHHh-CCcEEEEcCC---------------cHHHHHHHH
Q 042485 145 EGKKLLVLDIDYTLFDHRST----AENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---------------SMKWVELKM 204 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~----~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---------------~~~ya~~~l 204 (332)
.+.|+++||+||||+..... .........||+.++|+.|++ .|.++|.|++ ...+++.++
T Consensus 12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l 91 (176)
T 2fpr_A 12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF 91 (176)
T ss_dssp -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHH
T ss_pred CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHH
Confidence 37899999999999977421 111235678999999999998 6999999999 677888999
Q ss_pred HHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 205 EELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 205 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+.+|+. +..++ ++...........||-+.+|... -+ .+++++|+|+|++....+....|+...-+
T Consensus 92 ~~~gl~------fd~v~-----~s~~~~~~~~~~~KP~p~~~~~~~~~~g-i~~~~~l~VGD~~~Di~~A~~aG~~~i~v 159 (176)
T 2fpr_A 92 TSQGVQ------FDEVL-----ICPHLPADECDCRKPKVKLVERYLAEQA-MDRANSYVIGDRATDIQLAENMGINGLRY 159 (176)
T ss_dssp HHTTCC------EEEEE-----EECCCGGGCCSSSTTSCGGGGGGC-----CCGGGCEEEESSHHHHHHHHHHTSEEEEC
T ss_pred HHcCCC------eeEEE-----EcCCCCcccccccCCCHHHHHHHHHHcC-CCHHHEEEEcCCHHHHHHHHHcCCeEEEE
Confidence 988763 22221 01000001112347777666652 14 48899999999998888887888887655
Q ss_pred cC
Q 042485 282 RK 283 (332)
Q Consensus 282 ~~ 283 (332)
..
T Consensus 160 ~~ 161 (176)
T 2fpr_A 160 DR 161 (176)
T ss_dssp BT
T ss_pred cC
Confidence 44
No 105
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.58 E-value=5.8e-08 Score=73.00 Aligned_cols=73 Identities=8% Similarity=0.114 Sum_probs=58.5
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCC-Ccc-cCcccccccCCCCCCceEEEE
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIG-NKL-ADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~-gk~-l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+|.|+|+.....+.|++++++|+.+|+++|++.++++++.|.|..-... +.+ +..+.+|+++||+.|+.|++.
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4668999888899999999999999999999999999999988641100 111 236789999999999998863
No 106
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=98.55 E-value=6.3e-09 Score=83.80 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=80.2
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCc
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLA 225 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~ 225 (332)
.+++++|+||||.+ .....|++.++|+.|++ ++.++|.|++...+++.+++.+++... + ..++
T Consensus 2 ~k~i~~D~DgtL~~--------~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~--f--~~i~---- 65 (137)
T 2pr7_A 2 MRGLIVDYAGVLDG--------TDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGV--V--DKVL---- 65 (137)
T ss_dssp CCEEEECSTTTTSS--------CHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTS--S--SEEE----
T ss_pred CcEEEEeccceecC--------CCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhh--c--cEEE----
Confidence 47899999999932 24567999999999998 699999999999999999988876421 1 1111
Q ss_pred eEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 226 MITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 226 ~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+..... ..|+-+.++.. .-+ .+++++++|+|++.........|+....+.
T Consensus 66 --~~~~~~----~~Kp~~~~~~~~~~~~~-~~~~~~~~vgD~~~di~~a~~~G~~~i~~~ 118 (137)
T 2pr7_A 66 --LSGELG----VEKPEEAAFQAAADAID-LPMRDCVLVDDSILNVRGAVEAGLVGVYYQ 118 (137)
T ss_dssp --EHHHHS----CCTTSHHHHHHHHHHTT-CCGGGEEEEESCHHHHHHHHHHTCEEEECS
T ss_pred --EeccCC----CCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCCCEEEEeC
Confidence 101111 23665555543 114 478999999999988877777888655553
No 107
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=98.53 E-value=6.1e-08 Score=82.25 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=83.2
Q ss_pred cceEEEecCCceEeccCCCC--CCceecCCcHHHHHHHHHh-CCcEEEEcCCcH---------------HHHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRSTAE--NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---------------KWVELKMEELG 208 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~--~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---------------~ya~~~l~~l~ 208 (332)
.|+++||+||||++...... .......||+.++|+.|++ +|.++|.|+++. .++..+++.+|
T Consensus 1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 80 (179)
T 3l8h_A 1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG 80 (179)
T ss_dssp CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCC
Confidence 47899999999997643111 1235678999999999998 699999999986 67788888777
Q ss_pred CCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 209 VLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 209 ~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.. +..++. ............||-+.+|.. .-+ .+++++++|+|+.....+....|+...-+
T Consensus 81 ~~------~~~~~~-----~~~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~~~~~vGD~~~Di~~a~~aG~~~i~v 144 (179)
T 3l8h_A 81 GV------VDAIFM-----CPHGPDDGCACRKPLPGMYRDIARRYD-VDLAGVPAVGDSLRDLQAAAQAGCAPWLV 144 (179)
T ss_dssp CC------CCEEEE-----ECCCTTSCCSSSTTSSHHHHHHHHHHT-CCCTTCEEEESSHHHHHHHHHHTCEEEEE
T ss_pred Cc------eeEEEE-----cCCCCCCCCCCCCCCHHHHHHHHHHcC-CCHHHEEEECCCHHHHHHHHHCCCcEEEE
Confidence 21 111110 000011112344776666654 124 48999999999998888877888764444
No 108
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=98.51 E-value=1.2e-07 Score=81.61 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=85.3
Q ss_pred CcceEEEecCCceEeccCCC-------CCCceecCCcHHHHHHHHHh-CCcEEEEcCCcH---HHHHHHHHHhCCCCCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTA-------ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---KWVELKMEELGVLTNPN 214 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~-------~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---~ya~~~l~~l~~~~~~~ 214 (332)
+.++++||+||||+...... ....+...||+.++|+.|++ ++.++|.|++.. .++..+++.+|+..
T Consensus 2 ~ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~--- 78 (189)
T 3ib6_A 2 SLTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIID--- 78 (189)
T ss_dssp -CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGG---
T ss_pred CceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchh---
Confidence 35789999999998743210 01235789999999999998 699999998887 89999999988741
Q ss_pred ceEEEEecCCceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCC-ccccccCCCCeeeecccc
Q 042485 215 YKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDL-RRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 215 ~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~-~~~~~~~p~Ngi~I~~f~ 282 (332)
.+..++.. ..........|+-+.+|... -+ .+++++++|+|+ .....+....|+...-+.
T Consensus 79 -~fd~i~~~------~~~~~~~~~~KP~p~~~~~~~~~~~-~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~ 142 (189)
T 3ib6_A 79 -YFDFIYAS------NSELQPGKMEKPDKTIFDFTLNALQ-IDKTEAVMVGNTFESDIIGANRAGIHAIWLQ 142 (189)
T ss_dssp -GEEEEEEC------CTTSSTTCCCTTSHHHHHHHHHHHT-CCGGGEEEEESBTTTTHHHHHHTTCEEEEEC
T ss_pred -heEEEEEc------cccccccCCCCcCHHHHHHHHHHcC-CCcccEEEECCCcHHHHHHHHHCCCeEEEEC
Confidence 12222211 11000002347766665541 14 489999999999 688877777787765553
No 109
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=98.44 E-value=6.3e-08 Score=86.68 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+.+ ++.+++.|++. .+..+++.+|+... +.+++. ..+. ...||-+.+|..
T Consensus 96 ~~pg~~~ll~~L~~~g~~i~i~t~~~--~~~~~l~~~gl~~~----fd~i~~------~~~~----~~~KP~p~~~~~a~ 159 (243)
T 4g9b_A 96 VLPGIRSLLADLRAQQISVGLASVSL--NAPTILAALELREF----FTFCAD------ASQL----KNSKPDPEIFLAAC 159 (243)
T ss_dssp BCTTHHHHHHHHHHTTCEEEECCCCT--THHHHHHHTTCGGG----CSEECC------GGGC----SSCTTSTHHHHHHH
T ss_pred ccccHHHHHHhhhcccccceeccccc--chhhhhhhhhhccc----cccccc------cccc----cCCCCcHHHHHHHH
Confidence 68999999999987 69999999865 46778888877421 112211 1111 234887777765
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCC------CCCchHHHHHHHHHHhccC
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHAN------RDSDQELVKLTQYLLAIAD 306 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~------~~~D~~L~~L~~~L~~l~~ 306 (332)
.-| .++++||+|+|++.........|+........... ...|-.+..|..+++.|++
T Consensus 160 ~~lg-~~p~e~l~VgDs~~di~aA~~aG~~~I~V~~g~~~ad~~~~~~~~l~~~~l~~~~~~l~~ 223 (243)
T 4g9b_A 160 AGLG-VPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNVAE 223 (243)
T ss_dssp HHHT-SCGGGEEEEESSHHHHHHHHHHTCEEEEESTTCCSCSEEESSGGGCCHHHHHHHHHHHSC
T ss_pred HHcC-CChHHEEEEcCCHHHHHHHHHcCCEEEEECCCCCcHHHhcCChhhcCHHHHHHHHHHHHH
Confidence 124 48999999999999888888888776555322111 1134455677777777664
No 110
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=98.44 E-value=1.7e-07 Score=81.99 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=68.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....|++.++|+.+.+ .+.++|.|++...+++.+++.+|+... +..+ ++...... .|+-+.++..
T Consensus 102 ~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~----f~~i------~~~~~~~~----~Kp~~~~~~~ 167 (231)
T 3kzx_A 102 FMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHY----FDSI------IGSGDTGT----IKPSPEPVLA 167 (231)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGG----CSEE------EEETSSSC----CTTSSHHHHH
T ss_pred ceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhh----eeeE------EcccccCC----CCCChHHHHH
Confidence 3578999999999998 599999999999999999998877421 1111 11111122 2554433332
Q ss_pred ---CCCcCCCC-cEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 ---FPEFYSSK-NTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ---~~~~~~~~-~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++ ++++|+|++....+....|+.+..+..
T Consensus 168 ~~~~lg-i~~~~~~v~vGD~~~Di~~a~~aG~~~v~~~~ 205 (231)
T 3kzx_A 168 ALTNIN-IEPSKEVFFIGDSISDIQSAIEAGCLPIKYGS 205 (231)
T ss_dssp HHHHHT-CCCSTTEEEEESSHHHHHHHHHTTCEEEEECC
T ss_pred HHHHcC-CCcccCEEEEcCCHHHHHHHHHCCCeEEEECC
Confidence 114 4788 999999999888887778876666643
No 111
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=98.37 E-value=2.9e-07 Score=80.46 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=66.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCC-C-Cccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSR-G-IFDCKPLGLIWD 247 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~-g-~~~~KdL~~i~~ 247 (332)
..+||+.++|+.+++ ++.++|.|++...+++.+++++|+..+..+.....++.+..++...... + ...-|+ .++.
T Consensus 86 ~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp--~~~~ 163 (225)
T 1nnl_A 86 HLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKG--KVIK 163 (225)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHH--HHHH
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchH--HHHH
Confidence 468999999999998 6999999999999999999999874211111011122222222111110 0 001254 2222
Q ss_pred cCCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 248 QFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 248 ~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
....+++.+++++|+|++....+....|+ ...|
T Consensus 164 ~~~~~~~~~~~~~vGDs~~Di~~a~~ag~-~i~~ 196 (225)
T 1nnl_A 164 LLKEKFHFKKIIMIGDGATDMEACPPADA-FIGF 196 (225)
T ss_dssp HHHHHHCCSCEEEEESSHHHHTTTTTSSE-EEEE
T ss_pred HHHHHcCCCcEEEEeCcHHhHHHHHhCCe-EEEe
Confidence 21111344889999999988888888888 4445
No 112
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=98.36 E-value=7.2e-08 Score=83.93 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=68.4
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...||+.++|+.+++.|.++|.|++...+++.+++++|+.. +|+. .++. + .. .||-+.++..
T Consensus 84 ~~~~g~~~~l~~L~~~~~l~i~T~~~~~~~~~~l~~~gl~~--------~f~~--i~~~-~-~~----~Kp~p~~~~~~~ 147 (210)
T 2ah5_A 84 QLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIHH--------FFDG--IYGS-S-PE----APHKADVIHQAL 147 (210)
T ss_dssp EECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCGG--------GCSE--EEEE-C-SS----CCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCchh--------heee--eecC-C-CC----CCCChHHHHHHH
Confidence 35699999999999899999999999999999999887742 1111 1111 1 12 2665555544
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .++++|++|+|++....+....|+.+..+
T Consensus 148 ~~lg-~~p~~~~~vgDs~~Di~~a~~aG~~~i~v 180 (210)
T 2ah5_A 148 QTHQ-LAPEQAIIIGDTKFDMLGARETGIQKLAI 180 (210)
T ss_dssp HHTT-CCGGGEEEEESSHHHHHHHHHHTCEEEEE
T ss_pred HHcC-CCcccEEEECCCHHHHHHHHHCCCcEEEE
Confidence 124 48999999999998888888888865544
No 113
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=98.35 E-value=1.3e-07 Score=84.75 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=65.0
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+++ .+.+++-|++ ..+..+|+.+|+.. .+.+++.. . .....||-+.+|..
T Consensus 117 ~~p~~~~ll~~Lk~~g~~i~i~~~~--~~~~~~L~~~gl~~----~Fd~i~~~--------~--~~~~~KP~p~~~~~a~ 180 (250)
T 4gib_A 117 ILPGIESLLIDVKSNNIKIGLSSAS--KNAINVLNHLGISD----KFDFIADA--------G--KCKNNKPHPEIFLMSA 180 (250)
T ss_dssp SCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHHTCGG----GCSEECCG--------G--GCCSCTTSSHHHHHHH
T ss_pred cchhHHHHHHHHHhccccccccccc--chhhhHhhhccccc----ccceeecc--------c--ccCCCCCcHHHHHHHH
Confidence 57999999999997 5777775544 46778899888742 11122211 1 11234887777654
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++||+|+|++.........|+....+.
T Consensus 181 ~~lg-~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~ 214 (250)
T 4gib_A 181 KGLN-VNPQNCIGIEDASAGIDAINSANMFSVGVG 214 (250)
T ss_dssp HHHT-CCGGGEEEEESSHHHHHHHHHTTCEEEEES
T ss_pred HHhC-CChHHeEEECCCHHHHHHHHHcCCEEEEEC
Confidence 124 489999999999998888888898776553
No 114
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=98.35 E-value=5.3e-07 Score=78.64 Aligned_cols=117 Identities=13% Similarity=-0.001 Sum_probs=76.6
Q ss_pred CCcceEEEecCCceEeccCCCCC------CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceE
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAEN------PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKI 217 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~------~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~ 217 (332)
+..++++||+||||++....... ......||+.++|+.|++ +|.++|.|+.....+..++ +.
T Consensus 4 ~~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~---~~-------- 72 (196)
T 2oda_A 4 PTFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLA---AP-------- 72 (196)
T ss_dssp -CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHH---TT--------
T ss_pred CcCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhc---Cc--------
Confidence 45789999999999984322111 123567999999999987 7999999999888774332 21
Q ss_pred EEEecCCceEEEeeCCCCCcccccccccccc----CCCcCC-CCcEEEEeCCccccccCCCCeeeecccc
Q 042485 218 TALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FPEFYS-SKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 218 ~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~~~~~-~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+++ .+++..+. ..-||-+.++.+ + + .+ ++++|+|.|++.-.......|+....+.
T Consensus 73 --~~d--~v~~~~~~----~~~KP~p~~~~~a~~~l-~-~~~~~~~v~VGDs~~Di~aA~~aG~~~i~v~ 132 (196)
T 2oda_A 73 --VND--WMIAAPRP----TAGWPQPDACWMALMAL-N-VSQLEGCVLISGDPRLLQSGLNAGLWTIGLA 132 (196)
T ss_dssp --TTT--TCEECCCC----SSCTTSTHHHHHHHHHT-T-CSCSTTCEEEESCHHHHHHHHHHTCEEEEES
T ss_pred --cCC--EEEECCcC----CCCCCChHHHHHHHHHc-C-CCCCccEEEEeCCHHHHHHHHHCCCEEEEEc
Confidence 111 12221111 123776665543 2 3 24 4899999999988877777888765543
No 115
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=98.33 E-value=1.1e-07 Score=81.88 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=83.8
Q ss_pred CcceEEEecCCceEeccCCC------------C----------------------------CCceecCCcHHHHHHHHHh
Q 042485 146 GKKLLVLDIDYTLFDHRSTA------------E----------------------------NPLQLMRPYLHEFLTAAYA 185 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~------------~----------------------------~~~~~~RP~l~eFL~~l~~ 185 (332)
..++++|||||||+++.... . .......|++.++|+.+.+
T Consensus 5 ~~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 84 (205)
T 3m9l_A 5 EIKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAG 84 (205)
T ss_dssp GCCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHHH
T ss_pred cCCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHh
Confidence 46799999999999874310 0 0123578999999999998
Q ss_pred -CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEE
Q 042485 186 -EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMF 261 (332)
Q Consensus 186 -~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iiv 261 (332)
++.++|.|++...+++.+++.+|+.. +|+....++ ...+ ..|+-+.++.. .-+ .++++|++|
T Consensus 85 ~g~~~~i~s~~~~~~~~~~l~~~~l~~--------~f~~~~i~~---~~~~--~~kp~~~~~~~~~~~~g-~~~~~~i~i 150 (205)
T 3m9l_A 85 RGYRLGILTRNARELAHVTLEAIGLAD--------CFAEADVLG---RDEA--PPKPHPGGLLKLAEAWD-VSPSRMVMV 150 (205)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHTTCGG--------GSCGGGEEC---TTTS--CCTTSSHHHHHHHHHTT-CCGGGEEEE
T ss_pred cCCeEEEEeCCchHHHHHHHHHcCchh--------hcCcceEEe---CCCC--CCCCCHHHHHHHHHHcC-CCHHHEEEE
Confidence 59999999999999999999888641 111001111 1111 22544333332 114 489999999
Q ss_pred eCCccccccCCCCeeeeccccC
Q 042485 262 DDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 262 DD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
+|+.....+....|+....+..
T Consensus 151 GD~~~Di~~a~~aG~~~i~v~~ 172 (205)
T 3m9l_A 151 GDYRFDLDCGRAAGTRTVLVNL 172 (205)
T ss_dssp ESSHHHHHHHHHHTCEEEECSS
T ss_pred CCCHHHHHHHHHcCCEEEEEeC
Confidence 9999888887777875554443
No 116
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=98.32 E-value=4.3e-07 Score=79.76 Aligned_cols=135 Identities=10% Similarity=-0.009 Sum_probs=81.7
Q ss_pred cccCCCcCCcceEEEecCCceEeccCCC-CCCceecCCcHHHHHHHHHh-CCcEEEEcCCc---------------HHHH
Q 042485 138 KLRNPSREGKKLLVLDIDYTLFDHRSTA-ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS---------------MKWV 200 (332)
Q Consensus 138 ~~l~~~~~~kk~LVLDLD~TLi~~~~~~-~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~---------------~~ya 200 (332)
|..+.-....++++||+||||+...... ........||+.++|+.|++ ++.++|.|++. ..++
T Consensus 16 ~~~~~m~~~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~ 95 (211)
T 2gmw_A 16 PRGSHMAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWM 95 (211)
T ss_dssp --------CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHH
T ss_pred ccchhhhhcCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHH
Confidence 3334434467899999999999764211 11124578999999999998 69999999999 5888
Q ss_pred HHHHHHhCCCCCCCceEEEEecCC-ceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCee
Q 042485 201 ELKMEELGVLTNPNYKITALLDHL-AMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGL 276 (332)
Q Consensus 201 ~~~l~~l~~~~~~~~~~~~~~d~~-~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi 276 (332)
..+++.+|+. +...++.... .... ..........|+-+.++... -+ .+++++++|+|+.....+....|+
T Consensus 96 ~~~l~~~gl~----f~~~~~~~~~~~~~~-~~~~~~~~~~KP~p~~~~~~~~~lg-i~~~~~~~VGD~~~Di~~a~~aG~ 169 (211)
T 2gmw_A 96 DWSLADRDVD----LDGIYYCPHHPQGSV-EEFRQVCDCRKPHPGMLLSARDYLH-IDMAASYMVGDKLEDMQAAVAANV 169 (211)
T ss_dssp HHHHHHTTCC----CSEEEEECCBTTCSS-GGGBSCCSSSTTSCHHHHHHHHHHT-BCGGGCEEEESSHHHHHHHHHTTC
T ss_pred HHHHHHcCCc----eEEEEECCcCCCCcc-cccCccCcCCCCCHHHHHHHHHHcC-CCHHHEEEEcCCHHHHHHHHHCCC
Confidence 9999988873 1111110000 0000 00000112346655555431 14 489999999999988877777786
Q ss_pred ee
Q 042485 277 AI 278 (332)
Q Consensus 277 ~I 278 (332)
..
T Consensus 170 ~~ 171 (211)
T 2gmw_A 170 GT 171 (211)
T ss_dssp SE
T ss_pred ce
Confidence 54
No 117
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=98.30 E-value=1.1e-07 Score=81.23 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=68.2
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
..+|++.++|+.+.+ ++.++|.|++...+++.+++.+++... +..++ +...... .|+-+..+..
T Consensus 89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~~----~kp~~~~~~~~ 154 (214)
T 3e58_A 89 LIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGF----FDIVL------SGEEFKE----SKPNPEIYLTA 154 (214)
T ss_dssp HBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------EGGGCSS----CTTSSHHHHHH
T ss_pred CcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhh----eeeEe------ecccccC----CCCChHHHHHH
Confidence 578999999999998 599999999999999999998877421 11111 1111112 2443333322
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++++|+|+.....+....|+.+.-+..
T Consensus 155 ~~~~~-~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~ 190 (214)
T 3e58_A 155 LKQLN-VQASRALIIEDSEKGIAAGVAADVEVWAIRD 190 (214)
T ss_dssp HHHHT-CCGGGEEEEECSHHHHHHHHHTTCEEEEECC
T ss_pred HHHcC-CChHHeEEEeccHhhHHHHHHCCCEEEEECC
Confidence 114 4899999999999888888778877666543
No 118
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=98.29 E-value=4e-07 Score=76.05 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=77.7
Q ss_pred CcceEEEecCCceEeccCCC---CCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe
Q 042485 146 GKKLLVLDIDYTLFDHRSTA---ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALL 221 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~---~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~ 221 (332)
..++++||+||||+++.... ........|+..++|+.+.+ ++.++|.|++...+++.+++++|+. .++
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~--------~~~ 79 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVE--------EIY 79 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCC--------EEE
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCH--------hhc
Confidence 35799999999999764211 11123356888999999998 6999999999999999999988763 222
Q ss_pred cCCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 222 DHLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 222 d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+. + |+-+..+.. ..+ .+++++++|+|++....+....|+.+.
T Consensus 80 ~~-----------~----kp~~~~~~~~~~~~~-~~~~~~~~vGD~~~Di~~a~~ag~~~~ 124 (162)
T 2p9j_A 80 TG-----------S----YKKLEIYEKIKEKYS-LKDEEIGFIGDDVVDIEVMKKVGFPVA 124 (162)
T ss_dssp EC-----------C------CHHHHHHHHHHTT-CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred cC-----------C----CCCHHHHHHHHHHcC-CCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 21 1 222222211 113 488999999999988877777888755
No 119
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.26 E-value=2.5e-06 Score=65.67 Aligned_cols=66 Identities=9% Similarity=0.176 Sum_probs=50.2
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc--CcccccccCCC-CCCceEEEEecC
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA--DDTVLLSQLPL-KSSLKMTMIGTV 90 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l--~d~~~L~~~~i-~~g~~l~l~gs~ 90 (332)
.++..+.+.+.++.||..||++|+++|||||++|+|+| +|+.+ +....-..+.- .+...|||+...
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 89 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEECCCTTCBGGGSCCCBTTBCEEEEECC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccccCCCCccccCCCCCCCCCEEEEecC
Confidence 46788999999999999999999999999999999998 78654 33333333322 344567777543
No 120
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=98.25 E-value=8.6e-07 Score=76.52 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=78.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEec-CCceEEEe-eCCCCCcccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLD-HLAMITVQ-SDSRGIFDCKPLGLIW 246 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d-~~~~~~~~-~~~~g~~~~KdL~~i~ 246 (332)
...+|++.++|+.+.+ .+.++|.|++...+++.+++.+|+.. .+..++. ....++.. ....+ .-|+-+.++
T Consensus 74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~----~f~~~~~~~~~~~~~~~~~~~~--~~k~k~~~~ 147 (217)
T 3m1y_A 74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDA----AFSNTLIVENDALNGLVTGHMM--FSHSKGEML 147 (217)
T ss_dssp CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSE----EEEEEEEEETTEEEEEEEESCC--STTHHHHHH
T ss_pred CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcch----hccceeEEeCCEEEeeeccCCC--CCCChHHHH
Confidence 3579999999999998 59999999999999999999988741 1111210 01111110 01111 113333333
Q ss_pred cc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCCCchHHHHHHHHHHhccCCCCchhHhH
Q 042485 247 DQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLSNLDH 315 (332)
Q Consensus 247 ~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~~~L~~l~~~~Dvr~~~~ 315 (332)
.. .-+ .+++++++|+|++....+....|+.+. | + .+.++...++| +..-.|++.+++
T Consensus 148 ~~~~~~~g-~~~~~~i~vGDs~~Di~~a~~aG~~~~-~-~------~~~~l~~~ad~---v~~~~dl~~~~~ 207 (217)
T 3m1y_A 148 LVLQRLLN-ISKTNTLVVGDGANDLSMFKHAHIKIA-F-N------AKEVLKQHATH---CINEPDLALIKP 207 (217)
T ss_dssp HHHHHHHT-CCSTTEEEEECSGGGHHHHTTCSEEEE-E-S------CCHHHHTTCSE---EECSSBGGGGTT
T ss_pred HHHHHHcC-CCHhHEEEEeCCHHHHHHHHHCCCeEE-E-C------ccHHHHHhcce---eecccCHHHHHH
Confidence 22 114 489999999999998888888898773 3 2 22444333322 233456777665
No 121
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=98.23 E-value=1.9e-07 Score=79.80 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=66.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....|++.++|+.+.+ ++.++|.|++...+++.+++.+++... +..++. ...... .|+-+..+..
T Consensus 83 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~----f~~~~~------~~~~~~----~kp~~~~~~~ 148 (216)
T 2pib_A 83 LKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKY----FDVMVF------GDQVKN----GKPDPEIYLL 148 (216)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGG----CSEEEC------GGGSSS----CTTSTHHHHH
T ss_pred CCcCcCHHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChHHh----cCEEee------cccCCC----CCcCcHHHHH
Confidence 4578999999999998 599999999999999999998877421 112211 111112 2544433332
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.-+ .+++++++|+|++....+....|+...
T Consensus 149 ~~~~~~-~~~~~~i~iGD~~~Di~~a~~aG~~~i 181 (216)
T 2pib_A 149 VLERLN-VVPEKVVVFEDSKSGVEAAKSAGIERI 181 (216)
T ss_dssp HHHHHT-CCGGGEEEEECSHHHHHHHHHTTCCEE
T ss_pred HHHHcC-CCCceEEEEeCcHHHHHHHHHcCCcEE
Confidence 114 489999999999988888878888555
No 122
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=98.23 E-value=3.8e-07 Score=79.54 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=67.1
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...++..+++.+++.... ..++ +..... ..|+-+.++..
T Consensus 99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f----~~~~------~~~~~~----~~kp~~~~~~~~ 164 (233)
T 3umb_A 99 SAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLF----DHVL------SVDAVR----LYKTAPAAYALA 164 (233)
T ss_dssp EECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTTTC----SEEE------EGGGTT----CCTTSHHHHTHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHhhc----CEEE------EecccC----CCCcCHHHHHHH
Confidence 458999999999998 5999999999999999999988774211 1111 111111 23665544443
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .++++|++|+|+.....+....|+.+.-+
T Consensus 165 ~~~~~-~~~~~~~~vGD~~~Di~~a~~~G~~~~~v 198 (233)
T 3umb_A 165 PRAFG-VPAAQILFVSSNGWDACGATWHGFTTFWI 198 (233)
T ss_dssp HHHHT-SCGGGEEEEESCHHHHHHHHHHTCEEEEE
T ss_pred HHHhC-CCcccEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 114 48999999999988777777777766554
No 123
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=98.21 E-value=2.6e-07 Score=81.51 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=64.2
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+.+ ++.++|.|++...+++.+++.+|+... +..++ +..... ..|+-+.++..
T Consensus 106 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~----~~Kp~~~~~~~~~ 171 (240)
T 2no4_A 106 AYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRV----LDSCL------SADDLK----IYKPDPRIYQFAC 171 (240)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------EGGGTT----CCTTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHH----cCEEE------EccccC----CCCCCHHHHHHHH
Confidence 45999999999998 699999999999999999998876421 11111 111111 22554444432
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|++....+....|+.+.-+
T Consensus 172 ~~~~-~~~~~~~~iGD~~~Di~~a~~aG~~~~~v 204 (240)
T 2no4_A 172 DRLG-VNPNEVCFVSSNAWDLGGAGKFGFNTVRI 204 (240)
T ss_dssp HHHT-CCGGGEEEEESCHHHHHHHHHHTCEEEEE
T ss_pred HHcC-CCcccEEEEeCCHHHHHHHHHCCCEEEEE
Confidence 114 48999999999987777666677554433
No 124
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=98.20 E-value=3.6e-07 Score=80.07 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=67.6
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...+++.+++.+|+... +..++.. ... ...|+-+.++..
T Consensus 104 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~~~~~------~~~----~~~kp~~~~~~~~ 169 (237)
T 4ex6_A 104 LLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTR----LTVIAGD------DSV----ERGKPHPDMALHV 169 (237)
T ss_dssp GBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGGGT----CSEEECT------TTS----SSCTTSSHHHHHH
T ss_pred ccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCchhh----eeeEEeC------CCC----CCCCCCHHHHHHH
Confidence 368999999999998 599999999999999999999887421 1122111 011 122553333332
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+....+.
T Consensus 170 ~~~lg-~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~ 204 (237)
T 4ex6_A 170 ARGLG-IPPERCVVIGDGVPDAEMGRAAGMTVIGVS 204 (237)
T ss_dssp HHHHT-CCGGGEEEEESSHHHHHHHHHTTCEEEEES
T ss_pred HHHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 114 489999999999988888878888655553
No 125
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=98.20 E-value=1.2e-07 Score=81.71 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHH------hCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccc
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEE------LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGL 244 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~------l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~ 244 (332)
...|++.++|+.+++.+.++|.|++...+++.+++. +++.. . +..+ ++...... .|+-+.
T Consensus 89 ~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~~--~--f~~~------~~~~~~~~----~Kp~~~ 154 (211)
T 2i6x_A 89 EISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDS--F--FDKV------YASCQMGK----YKPNED 154 (211)
T ss_dssp EECHHHHHHHHHHTTTSEEEEEECCCHHHHHHHTSTTSSTTCCCGGG--G--SSEE------EEHHHHTC----CTTSHH
T ss_pred ccChHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHhhhccccccCHHH--H--cCeE------EeecccCC----CCCCHH
Confidence 457999999999999999999999999998888765 44421 0 1111 11111111 255444
Q ss_pred cccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 245 IWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 245 i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
++.. .-+ .+++++++|+|++....+....|+.+..+..
T Consensus 155 ~~~~~~~~~~-~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~ 195 (211)
T 2i6x_A 155 IFLEMIADSG-MKPEETLFIDDGPANVATAERLGFHTYCPDN 195 (211)
T ss_dssp HHHHHHHHHC-CCGGGEEEECSCHHHHHHHHHTTCEEECCCT
T ss_pred HHHHHHHHhC-CChHHeEEeCCCHHHHHHHHHcCCEEEEECC
Confidence 4432 114 4899999999999988888888988766654
No 126
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=98.19 E-value=4.9e-07 Score=78.51 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=67.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...++..+++.+++... +..++ +...... .|+-+.++..
T Consensus 96 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~~----~kp~~~~~~~~ 161 (230)
T 3um9_A 96 TPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNS----FDHLI------SVDEVRL----FKPHQKVYELA 161 (230)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGG----CSEEE------EGGGTTC----CTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhh----cceeE------ehhhccc----CCCChHHHHHH
Confidence 468999999999998 599999999999999999998877421 11111 1111122 2554444433
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|+.....+....|+.+.-+.
T Consensus 162 ~~~~~-~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~ 196 (230)
T 3um9_A 162 MDTLH-LGESEILFVSCNSWDATGAKYFGYPVCWIN 196 (230)
T ss_dssp HHHHT-CCGGGEEEEESCHHHHHHHHHHTCCEEEEC
T ss_pred HHHhC-CCcccEEEEeCCHHHHHHHHHCCCEEEEEe
Confidence 114 489999999999977777777777655543
No 127
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=98.19 E-value=3e-07 Score=79.84 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=67.6
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...+++.+++.+++... + ..+ ++......+ |+-+..+..
T Consensus 86 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~--f--~~~------~~~~~~~~~----kp~~~~~~~~ 151 (226)
T 3mc1_A 86 KVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFY--F--DAI------VGSSLDGKL----STKEDVIRYA 151 (226)
T ss_dssp CBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGG--C--SEE------EEECTTSSS----CSHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhh--e--eee------eccCCCCCC----CCCHHHHHHH
Confidence 478999999999998 699999999999999999998876421 1 111 121112222 443333332
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+.+..+.
T Consensus 152 ~~~lg-i~~~~~i~iGD~~~Di~~a~~aG~~~i~v~ 186 (226)
T 3mc1_A 152 MESLN-IKSDDAIMIGDREYDVIGALKNNLPSIGVT 186 (226)
T ss_dssp HHHHT-CCGGGEEEEESSHHHHHHHHTTTCCEEEES
T ss_pred HHHhC-cCcccEEEECCCHHHHHHHHHCCCCEEEEc
Confidence 114 488899999999988888888888554443
No 128
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=98.18 E-value=1.7e-06 Score=74.13 Aligned_cols=100 Identities=9% Similarity=0.128 Sum_probs=63.2
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEE-EeeCC-CCCcccccccccccc
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMIT-VQSDS-RGIFDCKPLGLIWDQ 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~-~~~~~-~g~~~~KdL~~i~~~ 248 (332)
.+|++.++|+.+.+ ++.++|.|++...+++.+++.+|+..+..+.....++....+. +...+ ......+-+...+
T Consensus 83 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 160 (219)
T 3kd3_A 83 LTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAK-- 160 (219)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHHG--
T ss_pred CChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHHh--
Confidence 78999999999998 6999999999999999999999874222222222332222211 11111 0011223333332
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
+ .+++++++|.|+..-..+. ..|+.
T Consensus 161 --~-~~~~~~~~vGD~~~Di~~~-~~G~~ 185 (219)
T 3kd3_A 161 --G-LIDGEVIAIGDGYTDYQLY-EKGYA 185 (219)
T ss_dssp --G-GCCSEEEEEESSHHHHHHH-HHTSC
T ss_pred --C-CCCCCEEEEECCHhHHHHH-hCCCC
Confidence 3 4899999999998777764 45543
No 129
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=98.17 E-value=3.4e-07 Score=83.12 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=66.5
Q ss_pred eecCCcHHHHHHHHHh-CC--cEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EY--DIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIW 246 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~y--eivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~ 246 (332)
....|++.++|+.+.+ ++ .++|.|++...++..+++.+|+.... ..++. ...........|+-+.++
T Consensus 141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~~f----d~v~~------~~~~~~~~~~~Kp~~~~~ 210 (282)
T 3nuq_A 141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF----DGLTY------CDYSRTDTLVCKPHVKAF 210 (282)
T ss_dssp CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTTSC----SEEEC------CCCSSCSSCCCTTSHHHH
T ss_pred cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCccccc----ceEEE------eccCCCcccCCCcCHHHH
Confidence 3468999999999998 68 99999999999999999998875211 12211 000111112236544444
Q ss_pred cc---CCCcCCC-CcEEEEeCCccccccCCCCeeee
Q 042485 247 DQ---FPEFYSS-KNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 247 ~~---~~~~~~~-~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.. .-+ .++ ++|++|+|++....+....|+.+
T Consensus 211 ~~~~~~lg-i~~~~~~i~vGD~~~Di~~a~~aG~~~ 245 (282)
T 3nuq_A 211 EKAMKESG-LARYENAYFIDDSGKNIETGIKLGMKT 245 (282)
T ss_dssp HHHHHHHT-CCCGGGEEEEESCHHHHHHHHHHTCSE
T ss_pred HHHHHHcC-CCCcccEEEEcCCHHHHHHHHHCCCeE
Confidence 33 114 487 99999999998888887788843
No 130
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=98.17 E-value=3.6e-07 Score=79.90 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=65.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...++..+++.+++... +..++ +...... .|+-+.++..
T Consensus 95 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~~----~Kp~~~~~~~~ 160 (232)
T 1zrn_A 95 APFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDG----FDHLL------SVDPVQV----YKPDNRVYELA 160 (232)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------ESGGGTC----CTTSHHHHHHH
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhh----hheEE------EecccCC----CCCCHHHHHHH
Confidence 356999999999997 699999999999999999998876411 11111 1111112 2555444433
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|+.....+....|+.+.-+
T Consensus 161 ~~~~~-~~~~~~~~iGD~~~Di~~a~~aG~~~~~~ 194 (232)
T 1zrn_A 161 EQALG-LDRSAILFVASNAWDATGARYFGFPTCWI 194 (232)
T ss_dssp HHHHT-SCGGGEEEEESCHHHHHHHHHHTCCEEEE
T ss_pred HHHcC-CCcccEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 114 48999999999997776666667655443
No 131
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=98.15 E-value=1.6e-06 Score=81.48 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=85.3
Q ss_pred CcCCcceEEEecCCceEeccCCC----------------------C---------------C----------CceecCCc
Q 042485 143 SREGKKLLVLDIDYTLFDHRSTA----------------------E---------------N----------PLQLMRPY 175 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~~~----------------------~---------------~----------~~~~~RP~ 175 (332)
..+.+++++|||||||+++.... . + ..+..+||
T Consensus 104 ~~~~~kaviFDlDGTLid~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~~~~~~i~~~~~~~~l~pg 183 (317)
T 4eze_A 104 PLPANGIIAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSPG 183 (317)
T ss_dssp SCCCSCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHHHHTCCBCTT
T ss_pred cCCCCCEEEEcCCCCccCCccHHHHHHHhCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHhCCEECcC
Confidence 34578899999999999975200 0 0 12458999
Q ss_pred HHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe--cCCceEEEe-eCCCCCccccccccccccC--
Q 042485 176 LHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALL--DHLAMITVQ-SDSRGIFDCKPLGLIWDQF-- 249 (332)
Q Consensus 176 l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~--d~~~~~~~~-~~~~g~~~~KdL~~i~~~~-- 249 (332)
+.++|+.+++ ++.++|.|++...+++.+++.+|+.. .+...+ +. ..++.. .... ..-|+-+.++...
T Consensus 184 ~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~----~f~~~l~~~d-g~~tg~i~~~~--~~~kpkp~~~~~~~~ 256 (317)
T 4eze_A 184 LLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDY----AFSNTVEIRD-NVLTDNITLPI--MNAANKKQTLVDLAA 256 (317)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE----EEEECEEEET-TEEEEEECSSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCe----EEEEEEEeeC-CeeeeeEeccc--CCCCCCHHHHHHHHH
Confidence 9999999998 69999999999999999999998841 111111 11 111100 0111 1224444443321
Q ss_pred -CCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 250 -PEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 250 -~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
-+ .+++++++|.|++....+....|+.+.
T Consensus 257 ~lg-v~~~~~i~VGDs~~Di~aa~~AG~~va 286 (317)
T 4eze_A 257 RLN-IATENIIACGDGANDLPMLEHAGTGIA 286 (317)
T ss_dssp HHT-CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred HcC-CCcceEEEEeCCHHHHHHHHHCCCeEE
Confidence 14 488999999999988888777787554
No 132
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=98.14 E-value=9.7e-07 Score=77.90 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=66.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ .+.++|.|++...++...++. ++....... .++.. ......|+-+.++..
T Consensus 109 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~d--~i~~~----------~~~~~~kp~~~~~~~~ 175 (243)
T 3qxg_A 109 ERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFPGMFHKE--LMVTA----------FDVKYGKPNPEPYLMA 175 (243)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HSTTTCCGG--GEECT----------TTCSSCTTSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHHHhcCcc--eEEeH----------HhCCCCCCChHHHHHH
Confidence 468999999999998 599999999999999888887 664211001 11111 111123554444433
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|++....+....|+.+..+.
T Consensus 176 ~~~lg-~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~ 210 (243)
T 3qxg_A 176 LKKGG-LKADEAVVIENAPLGVEAGHKAGIFTIAVN 210 (243)
T ss_dssp HHHTT-CCGGGEEEEECSHHHHHHHHHTTCEEEEEC
T ss_pred HHHcC-CCHHHeEEEeCCHHHHHHHHHCCCEEEEEe
Confidence 124 489999999999988888888888665554
No 133
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=98.13 E-value=5.7e-07 Score=78.12 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=67.2
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....|++.++|+.+.+ ++.++|.|++...++..+++.+++..... .++ +...... .|+-+.++..
T Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~----~~~------~~~~~~~----~kp~~~~~~~ 155 (233)
T 3s6j_A 90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKI----NIV------TRDDVSY----GKPDPDLFLA 155 (233)
T ss_dssp CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCTTSS----CEE------CGGGSSC----CTTSTHHHHH
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhhhhh----eee------ccccCCC----CCCChHHHHH
Confidence 4578999999999998 59999999999999999999887642111 111 1111112 2443333332
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .++++|++|+|+.....+....|+....+
T Consensus 156 ~~~~l~-~~~~~~i~iGD~~~Di~~a~~aG~~~i~v 190 (233)
T 3s6j_A 156 AAKKIG-APIDECLVIGDAIWDMLAARRCKATGVGL 190 (233)
T ss_dssp HHHHTT-CCGGGEEEEESSHHHHHHHHHTTCEEEEE
T ss_pred HHHHhC-CCHHHEEEEeCCHHhHHHHHHCCCEEEEE
Confidence 114 48999999999998888877788855544
No 134
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=98.13 E-value=8.9e-07 Score=77.15 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=66.2
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...|++.++|+.+.+.+.++|.|++...+++.+++.+++... +..+ ++...... .|+-+.++..
T Consensus 103 ~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~~----f~~~------~~~~~~~~----~kp~~~~~~~~~ 168 (238)
T 3ed5_A 103 QLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPF----FKDI------FVSEDTGF----QKPMKEYFNYVF 168 (238)
T ss_dssp CBCTTHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHTTCGGG----CSEE------EEGGGTTS----CTTCHHHHHHHH
T ss_pred CCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcChHhh----hheE------EEecccCC----CCCChHHHHHHH
Confidence 467999999999998899999999999999999998876421 1111 11111122 3655444433
Q ss_pred --CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 249 --FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
+.. .+++++++|+|++ ....+....|+.+.-+
T Consensus 169 ~~~g~-~~~~~~i~vGD~~~~Di~~a~~aG~~~i~~ 203 (238)
T 3ed5_A 169 ERIPQ-FSAEHTLIIGDSLTADIKGGQLAGLDTCWM 203 (238)
T ss_dssp HTSTT-CCGGGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred HHcCC-CChhHeEEECCCcHHHHHHHHHCCCEEEEE
Confidence 331 2899999999998 7777777777754444
No 135
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=98.11 E-value=4.5e-07 Score=79.85 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=67.7
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
..+|++.++|+.+.+ .+.++|.|++...+++.+++.+++... +..+ ++......+ |+-+.++..
T Consensus 110 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~~------~~~~~~~~~----kp~~~~~~~~ 175 (240)
T 3sd7_A 110 KIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRY----FKYI------AGSNLDGTR----VNKNEVIQYV 175 (240)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGG----CSEE------EEECTTSCC----CCHHHHHHHH
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhh----EEEE------EeccccCCC----CCCHHHHHHH
Confidence 588999999999998 599999999999999999998877421 1111 111112222 554444333
Q ss_pred --CCCcCC-CCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYS-SKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~-~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+ +++|++|+|++....+....|+....+.
T Consensus 176 ~~~~g-~~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~ 211 (240)
T 3sd7_A 176 LDLCN-VKDKDKVIMVGDRKYDIIGAKKIGIDSIGVL 211 (240)
T ss_dssp HHHHT-CCCGGGEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred HHHcC-CCCCCcEEEECCCHHHHHHHHHCCCCEEEEe
Confidence 114 37 9999999999988888777887554443
No 136
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=98.10 E-value=7.2e-07 Score=76.79 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=67.6
Q ss_pred eecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 170 QLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
....|++.++|+.+.+.+.++|.|++...+++.+++.+|+.. .+..++.. ...| ..||-+..+..
T Consensus 82 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~~l~~----~f~~~~~~--------~~~~--~~KP~~~~~~~~ 147 (209)
T 2hdo_A 82 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFMM----RMAVTISA--------DDTP--KRKPDPLPLLTA 147 (209)
T ss_dssp CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGGG----GEEEEECG--------GGSS--CCTTSSHHHHHH
T ss_pred CCcCCCHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHcChHh----hccEEEec--------CcCC--CCCCCcHHHHHH
Confidence 346899999999998779999999999999999998776631 12222211 1111 23654444433
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|+.....+....|+.+..+.
T Consensus 148 ~~~~~-~~~~~~i~vGD~~~Di~~a~~aG~~~~~~~ 182 (209)
T 2hdo_A 148 LEKVN-VAPQNALFIGDSVSDEQTAQAANVDFGLAV 182 (209)
T ss_dssp HHHTT-CCGGGEEEEESSHHHHHHHHHHTCEEEEEG
T ss_pred HHHcC-CCcccEEEECCChhhHHHHHHcCCeEEEEc
Confidence 114 489999999999888877777787766543
No 137
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=98.10 E-value=2.5e-07 Score=81.23 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=67.2
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHh------CCCCCCCceEEEEecCCceEEEeeCCCCCccccccccc
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEEL------GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLI 245 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l------~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i 245 (332)
..|++.++|+.+.+.+.++|.|++...+++.+++.+ ++. .+|+. .+...... ..|+-+.+
T Consensus 113 ~~~~~~~~l~~l~~~~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~--------~~fd~--i~~~~~~~----~~KP~~~~ 178 (229)
T 4dcc_A 113 IPTYKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVE--------DYFEK--TYLSYEMK----MAKPEPEI 178 (229)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHTSCBTTBCHH--------HHCSE--EEEHHHHT----CCTTCHHH
T ss_pred ccHHHHHHHHHHHhcCcEEEEECCChHHHHHHHhhhhhhccCCHH--------HhCCE--EEeecccC----CCCCCHHH
Confidence 569999999999988999999999999998776443 221 11111 11111111 23665555
Q ss_pred ccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 246 WDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 246 ~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
+.. .-+ .++++|++|+|++....+....|+.+.-+..
T Consensus 179 ~~~~~~~~g-~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~ 218 (229)
T 4dcc_A 179 FKAVTEDAG-IDPKETFFIDDSEINCKVAQELGISTYTPKA 218 (229)
T ss_dssp HHHHHHHHT-CCGGGEEEECSCHHHHHHHHHTTCEEECCCT
T ss_pred HHHHHHHcC-CCHHHeEEECCCHHHHHHHHHcCCEEEEECC
Confidence 543 114 4899999999999888888889988776654
No 138
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=98.10 E-value=2.6e-06 Score=74.57 Aligned_cols=101 Identities=11% Similarity=-0.020 Sum_probs=61.9
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEE--ecCCceEEE--e-eCCCCCccccc--c
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITAL--LDHLAMITV--Q-SDSRGIFDCKP--L 242 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~--~d~~~~~~~--~-~~~~g~~~~Kd--L 242 (332)
..+||+.++|+.+.+ ++.++|.|++...+++.+++.+|+.. -+... ++. ..++. . ....+ .-|. +
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~----~~~~~~~~~~-~~~~g~~~~~~~~~--~~K~~~~ 164 (232)
T 3fvv_A 92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQH----LIATDPEYRD-GRYTGRIEGTPSFR--EGKVVRV 164 (232)
T ss_dssp GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCE----EEECEEEEET-TEEEEEEESSCSST--HHHHHHH
T ss_pred hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCE----EEEcceEEEC-CEEeeeecCCCCcc--hHHHHHH
Confidence 359999999999987 69999999999999999999998741 11100 111 11110 0 01111 1121 2
Q ss_pred ccccccCCC-cCCCCcEEEEeCCccccccCCCCeeee
Q 042485 243 GLIWDQFPE-FYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 243 ~~i~~~~~~-~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
..+....+. ..+++++++|.|+..-..+....|+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~ 201 (232)
T 3fvv_A 165 NQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPI 201 (232)
T ss_dssp HHHHHHTTCCGGGSSEEEEEECCGGGHHHHHHSSEEE
T ss_pred HHHHHHcCCCcCchhheEEEeCCHhhHHHHHhCCCeE
Confidence 222222220 027899999999998777666666655
No 139
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.09 E-value=9.1e-06 Score=79.04 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=74.6
Q ss_pred cCCcceEEEecCCceEeccCCC-----CCCceecCCcHHHHHHHHHh-CCcEEEEcCCc------------HHHHHHHHH
Q 042485 144 REGKKLLVLDIDYTLFDHRSTA-----ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS------------MKWVELKME 205 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~-----~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~------------~~ya~~~l~ 205 (332)
....++++||+||||+...... ...+...-||+.++|+.|.+ +|.++|.|+.+ ..+++.+|+
T Consensus 55 ~~~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~ 134 (416)
T 3zvl_A 55 KPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLE 134 (416)
T ss_dssp CCCSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999875321 12234578999999999998 69999999966 334888899
Q ss_pred HhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc----CC---CcCCCCcEEEEeCCc
Q 042485 206 ELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FP---EFYSSKNTIMFDDLR 265 (332)
Q Consensus 206 ~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~---~~~~~~~~iivDD~~ 265 (332)
.+|+. +..++ ... .....||-+.+|.. +. + .+++++++|.|+.
T Consensus 135 ~lgl~------fd~i~------~~~----~~~~~KP~p~~~~~a~~~l~~~~~-v~~~~~l~VGDs~ 184 (416)
T 3zvl_A 135 KLGVP------FQVLV------ATH----AGLNRKPVSGMWDHLQEQANEGIP-ISVEDSVFVGDAA 184 (416)
T ss_dssp HHTSC------CEEEE------ECS----SSTTSTTSSHHHHHHHHHSSTTCC-CCGGGCEEECSCS
T ss_pred HcCCC------EEEEE------ECC----CCCCCCCCHHHHHHHHHHhCCCCC-CCHHHeEEEECCC
Confidence 88872 12221 111 11244888777765 33 2 4899999999996
No 140
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=98.09 E-value=4.9e-07 Score=77.30 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=66.1
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..|++.++|+.+++...++|.|++...++..+++.+++... |+. .++...... .|+-+.++..
T Consensus 87 ~~~~~~~~l~~l~~~g~~~i~s~~~~~~~~~~l~~~~~~~~--------f~~--~~~~~~~~~----~Kp~~~~~~~~~~ 152 (200)
T 3cnh_A 87 PRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLGEF--------LLA--FFTSSALGV----MKPNPAMYRLGLT 152 (200)
T ss_dssp BCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHHTGGGT--------CSC--EEEHHHHSC----CTTCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhCCHHHh--------cce--EEeecccCC----CCCCHHHHHHHHH
Confidence 67999999999987449999999999999999998876421 111 111111112 2554444332
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|++....+....|+.+.-+.
T Consensus 153 ~~~-~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~ 185 (200)
T 3cnh_A 153 LAQ-VRPEEAVMVDDRLQNVQAARAVGMHAVQCV 185 (200)
T ss_dssp HHT-CCGGGEEEEESCHHHHHHHHHTTCEEEECS
T ss_pred HcC-CCHHHeEEeCCCHHHHHHHHHCCCEEEEEC
Confidence 114 489999999999988888777888766554
No 141
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=1.4e-05 Score=63.87 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=66.6
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
..-|+|.|+. .|....+.|..++++..|+...++..|+++..++++| .|..+.++.|..++++.+|+.|.++-.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 3568888885 5777889999999999999999999999999999998 899999999999999999999998753
No 142
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=98.09 E-value=1.4e-06 Score=76.38 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=64.3
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....||+.++|+.+.+ ++.++|.|++...+++.+++.+|+.. .+..++.. .. ....||-+.++..
T Consensus 82 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~----~f~~i~~~--------~~--~~~~Kp~~~~~~~ 147 (222)
T 2nyv_A 82 TKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSG----YFDLIVGG--------DT--FGEKKPSPTPVLK 147 (222)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG----GCSEEECT--------TS--SCTTCCTTHHHHH
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCHH----HheEEEec--------Cc--CCCCCCChHHHHH
Confidence 3468999999999987 59999999999999999999887631 11122211 00 1122544444332
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
.-+ .+++++++|+|+.....+....|+.
T Consensus 148 ~~~~~~-~~~~~~~~vGD~~~Di~~a~~aG~~ 178 (222)
T 2nyv_A 148 TLEILG-EEPEKALIVGDTDADIEAGKRAGTK 178 (222)
T ss_dssp HHHHHT-CCGGGEEEEESSHHHHHHHHHHTCE
T ss_pred HHHHhC-CCchhEEEECCCHHHHHHHHHCCCe
Confidence 114 4899999999998888777777776
No 143
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=98.08 E-value=5.4e-07 Score=77.34 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCC
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFP 250 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~ 250 (332)
...||+.+ |+.+++.+.++|.|++...+++.+++.+|+... +..++ +..... ..||-+.++...-
T Consensus 74 ~~~~~~~~-l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~----~~Kp~~~~~~~~~ 138 (201)
T 2w43_A 74 KAYEDTKY-LKEISEIAEVYALSNGSINEVKQHLERNGLLRY----FKGIF------SAESVK----EYKPSPKVYKYFL 138 (201)
T ss_dssp EECGGGGG-HHHHHHHSEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------EGGGGT----CCTTCHHHHHHHH
T ss_pred ccCCChHH-HHHHHhCCeEEEEeCcCHHHHHHHHHHCCcHHh----CcEEE------ehhhcC----CCCCCHHHHHHHH
Confidence 45799999 999975599999999999999999998876411 11111 111111 2365555544321
Q ss_pred CcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 251 EFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 251 ~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.++.++++++|+|++....+....|+.+.-+
T Consensus 139 ~~~~~~~~~~vGD~~~Di~~a~~aG~~~~~~ 169 (201)
T 2w43_A 139 DSIGAKEAFLVSSNAFDVIGAKNAGMRSIFV 169 (201)
T ss_dssp HHHTCSCCEEEESCHHHHHHHHHTTCEEEEE
T ss_pred HhcCCCcEEEEeCCHHHhHHHHHCCCEEEEE
Confidence 1123889999999998888777778775554
No 144
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=98.06 E-value=5.1e-06 Score=71.94 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=73.8
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHH-------HHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceE
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEF-------LTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKI 217 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eF-------L~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~ 217 (332)
+.++++||+||||++.... +....|.+.+| |+.|.+ ++.++|.|+.+...+..+++.+|+.
T Consensus 18 ~ik~vifD~DGtL~~~~~~----~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~------- 86 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLH----IDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGIT------- 86 (191)
T ss_dssp TCSEEEECSTTTTBCSCCE----ECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCC-------
T ss_pred cCCEEEEeCCCCCCCCcee----ecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCc-------
Confidence 5679999999999985321 11123455556 999987 6999999999999999999999874
Q ss_pred EEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 218 TALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 218 ~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.+++. . ..++ .-+..+-..+ + .+++++++|.|+..-..+....|+.+.
T Consensus 87 -~~~~~--~-----kpk~----~~~~~~~~~~-~-~~~~~~~~vGD~~~Di~~~~~ag~~~~ 134 (191)
T 3n1u_A 87 -HYYKG--Q-----VDKR----SAYQHLKKTL-G-LNDDEFAYIGDDLPDLPLIQQVGLGVA 134 (191)
T ss_dssp -EEECS--C-----SSCH----HHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred -cceeC--C-----CChH----HHHHHHHHHh-C-CCHHHEEEECCCHHHHHHHHHCCCEEE
Confidence 23321 0 0011 1111111112 3 489999999999987777777777763
No 145
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=98.05 E-value=2.1e-06 Score=76.35 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=65.1
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+++ .+.++|.|++...+++.+++.+|+.. .+..++.. ......|+-+.++..
T Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~~----~f~~~~~~----------~~~~~~Kp~~~~~~~~~ 180 (243)
T 2hsz_A 115 LYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDH----LFSEMLGG----------QSLPEIKPHPAPFYYLC 180 (243)
T ss_dssp ECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG----GCSEEECT----------TTSSSCTTSSHHHHHHH
T ss_pred cCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCchh----eEEEEEec----------ccCCCCCcCHHHHHHHH
Confidence 56999999999987 59999999999999999999887641 11122211 111223554444332
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|++....+....|+.+..+
T Consensus 181 ~~~~-~~~~~~~~vGD~~~Di~~a~~aG~~~i~v 213 (243)
T 2hsz_A 181 GKFG-LYPKQILFVGDSQNDIFAAHSAGCAVVGL 213 (243)
T ss_dssp HHHT-CCGGGEEEEESSHHHHHHHHHHTCEEEEE
T ss_pred HHhC-cChhhEEEEcCCHHHHHHHHHCCCeEEEE
Confidence 114 48999999999998777776677765443
No 146
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=98.03 E-value=1.6e-06 Score=77.24 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=64.7
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...|++.++|+.++ .+.++|.|++...+++.+++.+|+... +..+ ++...... .|+-+.++..
T Consensus 93 ~~~~~~~~~l~~l~-g~~~~i~t~~~~~~~~~~l~~~gl~~~----f~~~------~~~~~~~~----~Kp~~~~~~~~~ 157 (253)
T 1qq5_A 93 TPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAGLTDS----FDAV------ISVDAKRV----FKPHPDSYALVE 157 (253)
T ss_dssp CBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTTCGGG----CSEE------EEGGGGTC----CTTSHHHHHHHH
T ss_pred CCCccHHHHHHHHc-CCCEEEEeCcCHHHHHHHHHHCCchhh----ccEE------EEccccCC----CCCCHHHHHHHH
Confidence 35699999999999 999999999999999999998876311 1111 11111112 2554444332
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|+.....+....|+.+.-+
T Consensus 158 ~~~~-~~~~~~~~vGD~~~Di~~a~~aG~~~~~~ 190 (253)
T 1qq5_A 158 EVLG-VTPAEVLFVSSNGFDVGGAKNFGFSVARV 190 (253)
T ss_dssp HHHC-CCGGGEEEEESCHHHHHHHHHHTCEEEEE
T ss_pred HHcC-CCHHHEEEEeCChhhHHHHHHCCCEEEEE
Confidence 114 48999999999987777766677665444
No 147
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.6e-05 Score=69.61 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=68.4
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
..-|+|+|+..|+...+.|..++++..|+...++..|+++.+++++| .|+.+.++.|..++++.+|++|.++-.
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 44689999888888899999999999999999999999999999998 999999999999999999999998843
No 148
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=98.02 E-value=3e-06 Score=73.94 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=59.9
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
...||+.++|+.+++ ++.++|.|++.. ++..+++.+|+... +..++ +.... ...||-+.++...
T Consensus 95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~~~----f~~~~------~~~~~----~~~Kp~~~~~~~~ 159 (220)
T 2zg6_A 95 FLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLKKY----FDALA------LSYEI----KAVKPNPKIFGFA 159 (220)
T ss_dssp EECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCGGG----CSEEC---------------------CCHHHHH
T ss_pred eECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcHhH----eeEEE------ecccc----CCCCCCHHHHHHH
Confidence 467999999999998 699999999976 68889998887421 11121 11111 1236665555441
Q ss_pred CCcCCCCcEEEEeCCcc-ccccCCCCeeeecccc
Q 042485 250 PEFYSSKNTIMFDDLRR-NFVMNPQNGLAIKPFR 282 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~~-~~~~~p~Ngi~I~~f~ 282 (332)
-.+++..- ++|+|++. ...+....|+.+.-+.
T Consensus 160 ~~~~~~~~-~~vgD~~~~Di~~a~~aG~~~i~v~ 192 (220)
T 2zg6_A 160 LAKVGYPA-VHVGDIYELDYIGAKRSYVDPILLD 192 (220)
T ss_dssp HHHHCSSE-EEEESSCCCCCCCSSSCSEEEEEBC
T ss_pred HHHcCCCe-EEEcCCchHhHHHHHHCCCeEEEEC
Confidence 11112222 99999998 8888888898766554
No 149
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=98.01 E-value=1.4e-06 Score=75.76 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=68.6
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...|++.++|+.+.+.+.++|.|++...+++.+++.+++... +..++ +...... .|+-+.++..
T Consensus 107 ~~~~~~~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~~l~~~----f~~~~------~~~~~~~----~kp~~~~~~~~~ 172 (240)
T 3qnm_A 107 GLMPHAKEVLEYLAPQYNLYILSNGFRELQSRKMRSAGVDRY----FKKII------LSEDLGV----LKPRPEIFHFAL 172 (240)
T ss_dssp CBSTTHHHHHHHHTTTSEEEEEECSCHHHHHHHHHHHTCGGG----CSEEE------EGGGTTC----CTTSHHHHHHHH
T ss_pred CcCccHHHHHHHHHcCCeEEEEeCCchHHHHHHHHHcChHhh----ceeEE------EeccCCC----CCCCHHHHHHHH
Confidence 468999999999998899999999999999999998876421 11111 1111112 2554444433
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccccC
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .++++|++|+|++ ....+....|+.+.-+..
T Consensus 173 ~~lg-i~~~~~~~iGD~~~~Di~~a~~aG~~~~~~~~ 208 (240)
T 3qnm_A 173 SATQ-SELRESLMIGDSWEADITGAHGVGMHQAFYNV 208 (240)
T ss_dssp HHTT-CCGGGEEEEESCTTTTHHHHHHTTCEEEEECC
T ss_pred HHcC-CCcccEEEECCCchHhHHHHHHcCCeEEEEcC
Confidence 114 4899999999996 778787778887766644
No 150
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=98.00 E-value=1.9e-06 Score=72.03 Aligned_cols=109 Identities=16% Similarity=0.008 Sum_probs=75.5
Q ss_pred CcceEEEecCCceEeccCCC--CC---CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--EN---PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--~~---~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
..++++||+||||+++.... .. .....++++ .|+.+++ ++.++|.|+....+++.+++++|+. .
T Consensus 3 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~--------~ 72 (164)
T 3e8m_A 3 EIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSA--GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVD--------Y 72 (164)
T ss_dssp CCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHH--HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCS--------E
T ss_pred cceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHH--HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCC--------E
Confidence 46799999999999864211 01 112233443 5899987 6999999999999999999998874 2
Q ss_pred EecCCceEEEeeCCCCCcccccccccccc----CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+++. .|+-+..+.. + + .+++++++|.|+..-..+....|+.+...
T Consensus 73 ~~~~---------------~kpk~~~~~~~~~~~-~-~~~~~~~~vGD~~~Di~~~~~ag~~~~~~ 121 (164)
T 3e8m_A 73 LFQG---------------VVDKLSAAEELCNEL-G-INLEQVAYIGDDLNDAKLLKRVGIAGVPA 121 (164)
T ss_dssp EECS---------------CSCHHHHHHHHHHHH-T-CCGGGEEEECCSGGGHHHHTTSSEEECCT
T ss_pred eecc---------------cCChHHHHHHHHHHc-C-CCHHHEEEECCCHHHHHHHHHCCCeEEcC
Confidence 3221 1332222221 2 3 48999999999998888888888877654
No 151
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=97.97 E-value=3.2e-06 Score=73.80 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=75.5
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHH-------HHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceE
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEF-------LTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKI 217 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eF-------L~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~ 217 (332)
+.++++||+||||+++... +...+|.+.+| |+.|.+ ++.++|.|+.....++.+++++|+.
T Consensus 24 ~ik~vifD~DGtL~d~~~~----~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~------- 92 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIY----MGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGIS------- 92 (195)
T ss_dssp TCCEEEECSTTTTSCSCCE----ECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCC-------
T ss_pred CCCEEEEcCCCCcCCCcEE----EccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCc-------
Confidence 5689999999999986421 11123555666 999987 6999999999999999999999874
Q ss_pred EEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 218 TALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 218 ~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
.+++. ... ...-+..+..++ + .+++++++|.|+..-..+-...|+.+..
T Consensus 93 -~~~~~---------~k~--k~~~~~~~~~~~-~-~~~~~~~~vGD~~nDi~~~~~ag~~va~ 141 (195)
T 3n07_A 93 -LIYQG---------QDD--KVQAYYDICQKL-A-IAPEQTGYIGDDLIDWPVMEKVALRVCV 141 (195)
T ss_dssp -EEECS---------CSS--HHHHHHHHHHHH-C-CCGGGEEEEESSGGGHHHHTTSSEEEEC
T ss_pred -EEeeC---------CCC--cHHHHHHHHHHh-C-CCHHHEEEEcCCHHHHHHHHHCCCEEEE
Confidence 22221 000 001122222222 3 4899999999999887777777777654
No 152
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=97.97 E-value=1.1e-06 Score=77.26 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=62.9
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ ++.++|.|++...++...++. ++....... .++ +...... .|+-+.++..
T Consensus 108 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~~--~~~------~~~~~~~----~kp~~~~~~~~ 174 (247)
T 3dv9_A 108 ERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFPGIFQAN--LMV------TAFDVKY----GKPNPEPYLMA 174 (247)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HSTTTCCGG--GEE------CGGGCSS----CTTSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHHHhcCCC--eEE------ecccCCC----CCCCCHHHHHH
Confidence 467999999999998 599999999999999998887 664211001 111 1111112 2554433332
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+.+..+.
T Consensus 175 ~~~lg-~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~ 209 (247)
T 3dv9_A 175 LKKGG-FKPNEALVIENAPLGVQAGVAAGIFTIAVN 209 (247)
T ss_dssp HHHHT-CCGGGEEEEECSHHHHHHHHHTTSEEEEEC
T ss_pred HHHcC-CChhheEEEeCCHHHHHHHHHCCCeEEEEc
Confidence 114 489999999999988888878887655554
No 153
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=97.96 E-value=1.5e-06 Score=77.51 Aligned_cols=100 Identities=14% Similarity=0.011 Sum_probs=68.2
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....|++.++|+.+.+ ++.++|.|++...+++.+++.+++.. +|+. .+++..... ...|+-+.++..
T Consensus 109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~--------~f~~-~i~~~~~~~---~~~Kp~~~~~~~ 176 (259)
T 4eek_A 109 VTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTE--------LAGE-HIYDPSWVG---GRGKPHPDLYTF 176 (259)
T ss_dssp CEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCHH--------HHCS-CEECGGGGT---TCCTTSSHHHHH
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChHh--------hccc-eEEeHhhcC---cCCCCChHHHHH
Confidence 3579999999999998 79999999999999999999887631 1110 011111111 022554444333
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+.+..+.
T Consensus 177 ~~~~lg-i~~~~~i~iGD~~~Di~~a~~aG~~~i~v~ 212 (259)
T 4eek_A 177 AAQQLG-ILPERCVVIEDSVTGGAAGLAAGATLWGLL 212 (259)
T ss_dssp HHHHTT-CCGGGEEEEESSHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcC-CCHHHEEEEcCCHHHHHHHHHCCCEEEEEc
Confidence 114 489999999999988888777888755553
No 154
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=97.96 E-value=7.5e-06 Score=71.84 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=81.4
Q ss_pred CCcceEEEecCCceEeccCC-CCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcH---------------HHHHHHHHHh
Q 042485 145 EGKKLLVLDIDYTLFDHRST-AENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---------------KWVELKMEEL 207 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~-~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---------------~ya~~~l~~l 207 (332)
...+++++|+||||+..... .........||+.++|+.|++ ++.++|.|+++. .++..+++++
T Consensus 29 ~~~k~i~~D~DGtl~~~~~y~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (218)
T 2o2x_A 29 PHLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREE 108 (218)
T ss_dssp SSCCCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEeCCCCcCCCCcccCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHc
Confidence 35789999999999976321 111124578999999999997 799999999998 7888899988
Q ss_pred CCCCCCCceEEEEecC-CceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 208 GVLTNPNYKITALLDH-LAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 208 ~~~~~~~~~~~~~~d~-~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
|+..+ .-+.+.... .++. ........-||-+.+|... -+ .+++++++|.|+..-..+....|+..
T Consensus 109 gl~~~--~~~~~~~~~~g~~~---~~~~~~~~~KP~~~~~~~~~~~~~-i~~~~~~~VGD~~~Di~~a~~aG~~~ 177 (218)
T 2o2x_A 109 GVFVD--MVLACAYHEAGVGP---LAIPDHPMRKPNPGMLVEAGKRLA-LDLQRSLIVGDKLADMQAGKRAGLAQ 177 (218)
T ss_dssp TCCCS--EEEEECCCTTCCST---TCCSSCTTSTTSCHHHHHHHHHHT-CCGGGCEEEESSHHHHHHHHHTTCSE
T ss_pred CCcee--eEEEeecCCCCcee---ecccCCccCCCCHHHHHHHHHHcC-CCHHHEEEEeCCHHHHHHHHHCCCCE
Confidence 86311 000110000 0000 0001112347765555441 14 48999999999997777766677544
No 155
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=97.95 E-value=3.4e-06 Score=81.68 Aligned_cols=132 Identities=21% Similarity=0.208 Sum_probs=86.8
Q ss_pred CcCCcceEEEecCCceEeccCC----------------------CC---------------C----------CceecCCc
Q 042485 143 SREGKKLLVLDIDYTLFDHRST----------------------AE---------------N----------PLQLMRPY 175 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~~----------------------~~---------------~----------~~~~~RP~ 175 (332)
.++.+++++|||||||+++... .. + ..+..+||
T Consensus 181 ~~~~~k~viFD~DgTLi~~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pg 260 (415)
T 3p96_A 181 ERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPG 260 (415)
T ss_dssp TTTCCCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTTTCBTHHHHHHHHHCCBCTT
T ss_pred cccCCcEEEEcCcccCcCCchHHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhcCCCHHHHHHHHHhCccCcc
Confidence 3567889999999999997530 00 0 02357999
Q ss_pred HHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC---CC
Q 042485 176 LHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PE 251 (332)
Q Consensus 176 l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~ 251 (332)
+.++|+.|++ +|.++|.|++...+++.+++.+|+.......+ .+.+ ..++....+. ....|+-+.++... -+
T Consensus 261 ~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l-~~~d--g~~tg~~~~~-v~~~kpk~~~~~~~~~~~g 336 (415)
T 3p96_A 261 ARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANEL-EIVD--GTLTGRVVGP-IIDRAGKATALREFAQRAG 336 (415)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECE-EEET--TEEEEEECSS-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeE-EEeC--CEEEeeEccC-CCCCcchHHHHHHHHHHcC
Confidence 9999999998 59999999999999999999998841000000 0111 1222111111 11235544444331 14
Q ss_pred cCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 252 ~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.+++++++|.|++....+....|+.+.
T Consensus 337 -i~~~~~i~vGD~~~Di~~a~~aG~~va 363 (415)
T 3p96_A 337 -VPMAQTVAVGDGANDIDMLAAAGLGIA 363 (415)
T ss_dssp -CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred -cChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 488999999999988888777888664
No 156
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=97.95 E-value=1.3e-06 Score=77.17 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=64.4
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..|++.++|+.+++ ++.++|.|++...++..+++.+++.. . +..++ +...... .|+-+.++..
T Consensus 95 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~--~--f~~~~------~~~~~~~----~Kp~~~~~~~~~ 160 (241)
T 2hoq_A 95 EVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDD--F--FEHVI------ISDFEGV----KKPHPKIFKKAL 160 (241)
T ss_dssp BCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCGG--G--CSEEE------EGGGGTC----CTTCHHHHHHHH
T ss_pred CCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcHh--h--ccEEE------EeCCCCC----CCCCHHHHHHHH
Confidence 57999999999997 69999999999999999999887631 1 11111 1111112 2554444332
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|++ .-..+....|+.+.-+
T Consensus 161 ~~~g-~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v 194 (241)
T 2hoq_A 161 KAFN-VKPEEALMVGDRLYSDIYGAKRVGMKTVWF 194 (241)
T ss_dssp HHHT-CCGGGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred HHcC-CCcccEEEECCCchHhHHHHHHCCCEEEEE
Confidence 114 4899999999998 5566666677765544
No 157
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.3e-05 Score=67.67 Aligned_cols=78 Identities=9% Similarity=0.038 Sum_probs=70.8
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
..-|+|+|+..|..+.+.|..++++..|+...++..|+++..++++| .|+.+.++.|..++++.+|++|.++-...+
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34588889878888899999999999999999999999999999998 999999999999999999999999876554
Q ss_pred c
Q 042485 93 E 93 (332)
Q Consensus 93 ~ 93 (332)
.
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 3
No 158
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}
Probab=97.92 E-value=2e-06 Score=75.85 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=61.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccc--ccccccc
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKP--LGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~Kd--L~~i~~~ 248 (332)
...||+.++|+.|++...++|.|++...++..+++.+|+.. +|+. ...+. .+ |+ +..+..
T Consensus 96 ~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~~~l~~~gl~~--------~f~~--~~~~~---~~----K~~~~~~~~~- 157 (231)
T 2p11_A 96 RVYPGALNALRHLGARGPTVILSDGDVVFQPRKIARSGLWD--------EVEG--RVLIY---IH----KELMLDQVME- 157 (231)
T ss_dssp GBCTTHHHHHHHHHTTSCEEEEEECCSSHHHHHHHHTTHHH--------HTTT--CEEEE---SS----GGGCHHHHHH-
T ss_pred CcCccHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHcCcHH--------hcCe--eEEec---CC----hHHHHHHHHh-
Confidence 46899999999999855999999999999999999887641 1221 11111 11 32 111111
Q ss_pred CCCcCCCCcEEEEeCCcc---ccccCCCCeeeeccc
Q 042485 249 FPEFYSSKNTIMFDDLRR---NFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~---~~~~~p~Ngi~I~~f 281 (332)
+ .+++++++|+|++. ........|+...-+
T Consensus 158 --~-~~~~~~~~vgDs~~d~~di~~A~~aG~~~i~v 190 (231)
T 2p11_A 158 --C-YPARHYVMVDDKLRILAAMKKAWGARLTTVFP 190 (231)
T ss_dssp --H-SCCSEEEEECSCHHHHHHHHHHHGGGEEEEEE
T ss_pred --c-CCCceEEEEcCccchhhhhHHHHHcCCeEEEe
Confidence 3 48999999999997 555556678765544
No 159
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=97.92 E-value=3.9e-06 Score=71.65 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=76.6
Q ss_pred CcceEEEecCCceEeccCCC--C-CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--E-NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALL 221 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--~-~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~ 221 (332)
..++++||+||||+++.... . .......|...++|+.+.+ ++.++|.|.....++..+++++++. .++
T Consensus 7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~--------~~~ 78 (180)
T 1k1e_A 7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIK--------LFF 78 (180)
T ss_dssp GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCC--------EEE
T ss_pred CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCc--------eee
Confidence 45899999999999764210 0 1112355678899999987 6999999999999999999998874 122
Q ss_pred cCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 222 DHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 222 d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
+. ... .-.-+..+...+ + .+++++++|.|+..-..+....|+.+..
T Consensus 79 ~~---------~k~--k~~~~~~~~~~~-~-~~~~~~~~vGD~~~Di~~~~~ag~~~~~ 124 (180)
T 1k1e_A 79 LG---------KLE--KETACFDLMKQA-G-VTAEQTAYIGDDSVDLPAFAACGTSFAV 124 (180)
T ss_dssp ES---------CSC--HHHHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred cC---------CCC--cHHHHHHHHHHc-C-CCHHHEEEECCCHHHHHHHHHcCCeEEe
Confidence 21 000 001111221111 3 4889999999999877776667776654
No 160
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=97.91 E-value=5.4e-06 Score=72.00 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=64.6
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...|++.++|+.+.+.+.++|.|++...++..+++.+++... +..++ +..... ..|+-+.++..
T Consensus 100 ~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~~~----f~~~~------~~~~~~----~~kp~~~~~~~~~ 165 (234)
T 3u26_A 100 ELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGIKDL----FDSIT------TSEEAG----FFKPHPRIFELAL 165 (234)
T ss_dssp CBCTTHHHHHHHHTTTSEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------EHHHHT----BCTTSHHHHHHHH
T ss_pred CcCcCHHHHHHHHHhCCcEEEEECCCHHHHHHHHHHcCcHHH----cceeE------eccccC----CCCcCHHHHHHHH
Confidence 467999999999998899999999999999999998876421 11111 111111 12554433322
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|++ .-..+....|+.+..+
T Consensus 166 ~~~~-~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v 199 (234)
T 3u26_A 166 KKAG-VKGEEAVYVGDNPVKDCGGSKNLGMTSILL 199 (234)
T ss_dssp HHHT-CCGGGEEEEESCTTTTHHHHHTTTCEEEEE
T ss_pred HHcC-CCchhEEEEcCCcHHHHHHHHHcCCEEEEE
Confidence 114 4899999999998 5577777778654444
No 161
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=97.91 E-value=2.7e-06 Score=75.34 Aligned_cols=100 Identities=11% Similarity=0.155 Sum_probs=64.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH-hCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE-LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~-l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...|++.++|+.+++ .+.++|.|++...++...+.+ +++.. +|+. .++ .........|+-+.++..
T Consensus 112 ~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~~--------~f~~--~~~--~~~~~~~~~Kp~~~~~~~ 179 (250)
T 3l5k_A 112 ALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFS--------LFSH--IVL--GDDPEVQHGKPDPDIFLA 179 (250)
T ss_dssp CBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHT--------TSSC--EEC--TTCTTCCSCTTSTHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHHh--------heee--EEe--cchhhccCCCCChHHHHH
Confidence 478999999999998 599999999998887776533 23321 1110 111 010011233665555443
Q ss_pred ---CCCcCCC--CcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 ---FPEFYSS--KNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ---~~~~~~~--~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .++ ++|++|+|+.....+....|+.+..+..
T Consensus 180 ~~~~lg-i~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~ 218 (250)
T 3l5k_A 180 CAKRFS-PPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPD 218 (250)
T ss_dssp HHHTSS-SCCCGGGEEEEESSHHHHHHHHHTTCEEEECCC
T ss_pred HHHHcC-CCCCcceEEEEeCCHHHHHHHHHcCCEEEEEcC
Confidence 113 366 9999999999888888888876655543
No 162
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=97.90 E-value=2.6e-06 Score=73.26 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=64.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccc----c
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGL----I 245 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~----i 245 (332)
...|++.++|+.+.+ ++.++|.|++...++..+++.+++... + ..++. ......+ |+-+. +
T Consensus 89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~--~--~~~~~------~~~~~~~----k~~~~~~~~~ 154 (225)
T 3d6j_A 89 ILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDW--F--DIIIG------GEDVTHH----KPDPEGLLLA 154 (225)
T ss_dssp EECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCTTC--C--SEEEC------GGGCSSC----TTSTHHHHHH
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCchhh--e--eeeee------hhhcCCC----CCChHHHHHH
Confidence 357999999999987 699999999999999999987766311 1 11111 0011111 33222 2
Q ss_pred cccCCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 246 WDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 246 ~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
..++ + .+++++++|+|+..-..+....|+.+..+.
T Consensus 155 ~~~~-~-~~~~~~i~iGD~~nDi~~~~~aG~~~~~~~ 189 (225)
T 3d6j_A 155 IDRL-K-ACPEEVLYIGDSTVDAGTAAAAGVSFTGVT 189 (225)
T ss_dssp HHHT-T-CCGGGEEEEESSHHHHHHHHHHTCEEEEET
T ss_pred HHHh-C-CChHHeEEEcCCHHHHHHHHHCCCeEEEEC
Confidence 2222 4 489999999999988877777787665543
No 163
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=97.88 E-value=5.4e-06 Score=69.88 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCC
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFP 250 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~ 250 (332)
..|++.++|+.+.+ .+.++|.|++. .+++..++.+++.. .+..++.. .... ..|+-+..+...-
T Consensus 83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~~~~~----~f~~~~~~------~~~~----~~kp~~~~~~~~~ 147 (190)
T 2fi1_A 83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKTSIAA----YFTEVVTS------SSGF----KRKPNPESMLYLR 147 (190)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHTTCGG----GEEEEECG------GGCC----CCTTSCHHHHHHH
T ss_pred cCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHcCCHh----heeeeeec------cccC----CCCCCHHHHHHHH
Confidence 68999999999998 59999999876 57888888877631 12222211 0111 1244333333211
Q ss_pred CcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 251 EFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 251 ~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.++..+++++|+|++....+....|+.+..+.
T Consensus 148 ~~~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~ 179 (190)
T 2fi1_A 148 EKYQISSGLVIGDRPIDIEAGQAAGLDTHLFT 179 (190)
T ss_dssp HHTTCSSEEEEESSHHHHHHHHHTTCEEEECS
T ss_pred HHcCCCeEEEEcCCHHHHHHHHHcCCeEEEEC
Confidence 11122299999999988877777787765553
No 164
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=97.88 E-value=2.4e-05 Score=67.06 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=63.4
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEE-EE-ecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKIT-AL-LDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~-~~-~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
..+||+.++|+.+.+.+.++|.|++...+++.+++.+|+.. .+. .+ ...+.............+.+-+..+
T Consensus 69 ~~~~g~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~gl~~----~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l--- 141 (206)
T 1rku_A 69 KPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT----LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAF--- 141 (206)
T ss_dssp CCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCCC----EEEEEEEECTTSCEEEEECCSSSHHHHHHHHH---
T ss_pred CCCccHHHHHHHHHhcCcEEEEECChHHHHHHHHHHcCCcc----eecceeEEcCCceEEeeecCCCchHHHHHHHH---
Confidence 45899999999999889999999999999999999988741 111 11 1111100000000011111122222
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+ ..++++++|+|++....+....|+.+.
T Consensus 142 --~-~~~~~~~~iGD~~~Di~~a~~aG~~~~ 169 (206)
T 1rku_A 142 --K-SLYYRVIAAGDSYNDTTMLSEAHAGIL 169 (206)
T ss_dssp --H-HTTCEEEEEECSSTTHHHHHHSSEEEE
T ss_pred --H-hcCCEEEEEeCChhhHHHHHhcCccEE
Confidence 3 268899999999988888777888754
No 165
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=97.87 E-value=4.4e-06 Score=75.11 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=66.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.+.+ ++.++|.|++.. .+..+++.+|+... |+. .++..... ..|+-+.++..
T Consensus 106 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~~~~~l~~~gl~~~--------f~~--~~~~~~~~----~~Kp~~~~~~~~ 170 (263)
T 3k1z_A 106 QVLDGAEDTLRECRTRGLRLAVISNFDR-RLEGILGGLGLREH--------FDF--VLTSEAAG----WPKPDPRIFQEA 170 (263)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEESCCT-THHHHHHHTTCGGG--------CSC--EEEHHHHS----SCTTSHHHHHHH
T ss_pred eECcCHHHHHHHHHhCCCcEEEEeCCcH-HHHHHHHhCCcHHh--------hhE--EEeecccC----CCCCCHHHHHHH
Confidence 478999999999998 599999999776 46888888876421 111 11111111 22665444433
Q ss_pred --CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++++|+|++ ....+....|+.+.-+..
T Consensus 171 ~~~~g-~~~~~~~~vGD~~~~Di~~a~~aG~~~i~~~~ 207 (263)
T 3k1z_A 171 LRLAH-MEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVG 207 (263)
T ss_dssp HHHHT-CCGGGEEEEESCHHHHTHHHHTTTCEEEEECC
T ss_pred HHHcC-CCHHHEEEECCCcHHHHHHHHHCCCEEEEEcC
Confidence 114 4899999999997 767777788888776654
No 166
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=97.86 E-value=8.3e-06 Score=72.05 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=76.4
Q ss_pred CcceEEEecCCceEeccCCC--CC---CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--EN---PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--~~---~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
..+++||||||||+++.... .. .....++++ +|+.|.+ ++.++|.|+.....++.+++++|+. .
T Consensus 48 ~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~--------~ 117 (211)
T 3ij5_A 48 NIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGIT--------H 117 (211)
T ss_dssp TCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCC--------E
T ss_pred CCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc--------h
Confidence 45799999999999985311 01 112233444 8899987 7999999999999999999999884 2
Q ss_pred EecCCceEEEeeCCCCCccccc--cccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 220 LLDHLAMITVQSDSRGIFDCKP--LGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~Kd--L~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+++.. .. |+ +..+...+ + .++++|++|-|+..-..+....|+.+..-.
T Consensus 118 ~f~~~---------k~----K~~~l~~~~~~l-g-~~~~~~~~vGDs~nDi~~~~~ag~~~a~~~ 167 (211)
T 3ij5_A 118 LYQGQ---------SD----KLVAYHELLATL-Q-CQPEQVAYIGDDLIDWPVMAQVGLSVAVAD 167 (211)
T ss_dssp EECSC---------SS----HHHHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHTTSSEEEECTT
T ss_pred hhccc---------CC----hHHHHHHHHHHc-C-cCcceEEEEcCCHHHHHHHHHCCCEEEeCC
Confidence 33210 11 21 22221212 3 489999999999988888777888765543
No 167
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=97.85 E-value=2.8e-06 Score=74.99 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=67.1
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..|++.++|+.+.+.+.++|.|++...++..+++.+|+. +..++.. .....+ |+-+.++..
T Consensus 121 ~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g~~------f~~~~~~------~~~~~~----kp~~~~~~~~~~ 184 (254)
T 3umc_A 121 PWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAGLP------WDMLLCA------DLFGHY----KPDPQVYLGACR 184 (254)
T ss_dssp ECTTHHHHHHHHTTTSEEEECCSSCHHHHHHHHHHHTCC------CSEECCH------HHHTCC----TTSHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcCCC------cceEEee------cccccC----CCCHHHHHHHHH
Confidence 469999999999988999999999999999999988773 1122111 111122 544443332
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+.+.-+.
T Consensus 185 ~lg-i~~~~~~~iGD~~~Di~~a~~aG~~~~~~~ 217 (254)
T 3umc_A 185 LLD-LPPQEVMLCAAHNYDLKAARALGLKTAFIA 217 (254)
T ss_dssp HHT-CCGGGEEEEESCHHHHHHHHHTTCEEEEEC
T ss_pred HcC-CChHHEEEEcCchHhHHHHHHCCCeEEEEe
Confidence 114 489999999999888888777888776664
No 168
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=97.85 E-value=3.9e-06 Score=74.91 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=66.8
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ .+.++|.|++...+++.+++.+++.... +..++. ......+ |+-+.++..
T Consensus 111 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~---~~~~~~------~~~~~~~----kp~~~~~~~~ 177 (277)
T 3iru_A 111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYT---PASTVF------ATDVVRG----RPFPDMALKV 177 (277)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCC---CSEEEC------GGGSSSC----TTSSHHHHHH
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCC---CceEec------HHhcCCC----CCCHHHHHHH
Confidence 468999999999997 5999999999999999999988764210 112211 1111122 443333332
Q ss_pred --CCCcCCC-CcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSS-KNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~-~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++ ++|++|.|+.....+....|+.+..+.
T Consensus 178 ~~~lg-i~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~ 213 (277)
T 3iru_A 178 ALELE-VGHVNGCIKVDDTLPGIEEGLRAGMWTVGVS 213 (277)
T ss_dssp HHHHT-CSCGGGEEEEESSHHHHHHHHHTTCEEEEEC
T ss_pred HHHcC-CCCCccEEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 114 488 999999999988888878887655443
No 169
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=97.85 E-value=3.7e-06 Score=73.29 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=61.7
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+.+ ++.++|.|++.. +..+++.+|+... +..++.. .... ..|+-+..+..
T Consensus 93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~~~----f~~i~~~------~~~~----~~Kp~~~~~~~~~ 156 (233)
T 3nas_A 93 LLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAIIDD----FHAIVDP------TTLA----KGKPDPDIFLTAA 156 (233)
T ss_dssp SCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCTTT----CSEECCC-------------------CCHHHHHH
T ss_pred cCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcHhh----cCEEeeH------hhCC----CCCCChHHHHHHH
Confidence 58999999999998 599999999854 7888888876421 1122111 0111 12443333322
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|.|+.....+....|+.+..+.
T Consensus 157 ~~lg-i~~~~~i~vGDs~~Di~~a~~aG~~~~~~~ 190 (233)
T 3nas_A 157 AMLD-VSPADCAAIEDAEAGISAIKSAGMFAVGVG 190 (233)
T ss_dssp HHHT-SCGGGEEEEECSHHHHHHHHHTTCEEEECC
T ss_pred HHcC-CCHHHEEEEeCCHHHHHHHHHcCCEEEEEC
Confidence 114 489999999999988888888888776663
No 170
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=97.84 E-value=1.1e-05 Score=70.09 Aligned_cols=99 Identities=8% Similarity=-0.007 Sum_probs=66.0
Q ss_pred ecCCcHHHHHHHHHhC--CcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYAE--YDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~--yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...|++.++|+.+++. +.++|.|++...++..+++.+++... +. .+. . ........|+.+.++..
T Consensus 93 ~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~--f~--~~~--------~-~~~~~~~~k~~~~~~~~ 159 (234)
T 2hcf_A 93 TLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHY--FP--FGA--------F-ADDALDRNELPHIALER 159 (234)
T ss_dssp EECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCSTT--CS--CEE--------C-TTTCSSGGGHHHHHHHH
T ss_pred CcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCchhh--cC--cce--------e-cCCCcCccchHHHHHHH
Confidence 3579999999999985 99999999999999999998876421 11 110 0 11111122444444332
Q ss_pred ----CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 ----FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ----~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+....++++|++|.|++.-..+....|+.+..+.
T Consensus 160 ~~~~lg~~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~ 197 (234)
T 2hcf_A 160 ARRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVA 197 (234)
T ss_dssp HHHHHCCCCCGGGEEEEESSHHHHHHHHTTTCEEEEEC
T ss_pred HHHHhCCCCCcccEEEECCCHHHHHHHHHCCCcEEEEc
Confidence 2200279999999999988888888887655543
No 171
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=97.84 E-value=7.4e-06 Score=70.66 Aligned_cols=110 Identities=20% Similarity=0.149 Sum_probs=74.2
Q ss_pred CcceEEEecCCceEeccCCC-CCC----ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRSTA-ENP----LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~-~~~----~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
..++++||+||||+++.... ... .+..++++ +|+.|.+ ++.++|.|+.....++.+++++|+. .
T Consensus 18 ~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~--------~ 87 (189)
T 3mn1_A 18 AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQ--GIKMLIASGVTTAIISGRKTAIVERRAKSLGIE--------H 87 (189)
T ss_dssp TCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCS--------E
T ss_pred hCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHH--HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCH--------H
Confidence 46799999999999874311 011 12233333 8999987 6999999999999999999999874 2
Q ss_pred EecCCceEEEeeCCCCCccccc--cccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 220 LLDHLAMITVQSDSRGIFDCKP--LGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~Kd--L~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
+++.. .+ |+ +..+..++ + .+++++++|.|+..-..+....|+.+..
T Consensus 88 ~f~~~---------~~----K~~~~~~~~~~~-g-~~~~~~~~vGD~~nDi~~~~~ag~~~~~ 135 (189)
T 3mn1_A 88 LFQGR---------ED----KLVVLDKLLAEL-Q-LGYEQVAYLGDDLPDLPVIRRVGLGMAV 135 (189)
T ss_dssp EECSC---------SC----HHHHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred HhcCc---------CC----hHHHHHHHHHHc-C-CChhHEEEECCCHHHHHHHHHCCCeEEe
Confidence 33220 11 33 22221112 3 4899999999999877776667776543
No 172
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=7.1e-06 Score=70.71 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=63.2
Q ss_pred ecCCcHHHHHHHHHh-C-CcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-E-YDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~-yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...|++.++|+.+.+ . +.++|.|++...++..+++.+++... +..+ ++. ...++ .-+..+..+
T Consensus 105 ~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~~~----f~~~------~~~-~kpk~----~~~~~~~~~ 169 (234)
T 3ddh_A 105 ELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPY----FDHI------EVM-SDKTE----KEYLRLLSI 169 (234)
T ss_dssp CBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGGG----CSEE------EEE-SCCSH----HHHHHHHHH
T ss_pred CcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcHhh----hhee------eec-CCCCH----HHHHHHHHH
Confidence 468999999999998 4 99999999999999999998877421 1111 111 00111 112222222
Q ss_pred CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 249 FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
+ + .++++|++|+|++ ....+....|+.+.-+
T Consensus 170 l-g-i~~~~~i~iGD~~~~Di~~a~~aG~~~v~v 201 (234)
T 3ddh_A 170 L-Q-IAPSELLMVGNSFKSDIQPVLSLGGYGVHI 201 (234)
T ss_dssp H-T-CCGGGEEEEESCCCCCCHHHHHHTCEEEEC
T ss_pred h-C-CCcceEEEECCCcHHHhHHHHHCCCeEEEe
Confidence 2 4 4899999999997 7777777777766554
No 173
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=97.80 E-value=2.8e-06 Score=73.72 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=63.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC-
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF- 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~- 249 (332)
...|++.++|+.+++.+.++|.|++...++..+++.++. . +..+ ++..... ..|+-+.+|...
T Consensus 99 ~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~~~l~~l~~----~--fd~i------~~~~~~~----~~KP~~~~~~~~l 162 (240)
T 3smv_A 99 PAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKLGV----E--FDHI------ITAQDVG----SYKPNPNNFTYMI 162 (240)
T ss_dssp CBCTTHHHHHHHHHHHSEEEEEESSCHHHHHHHHTTTCS----C--CSEE------EEHHHHT----SCTTSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCeEEEEeCCChhHHHHHHHhcCC----c--cCEE------EEccccC----CCCCCHHHHHHHH
Confidence 468999999999999999999999999999888765321 1 1111 1111111 225544433221
Q ss_pred -----CCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 250 -----PEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 -----~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
-+ .+++++++|+|++ ....+....|+.+.-+
T Consensus 163 ~~~~~lg-i~~~~~~~vGD~~~~Di~~a~~aG~~~~~~ 199 (240)
T 3smv_A 163 DALAKAG-IEKKDILHTAESLYHDHIPANDAGLVSAWI 199 (240)
T ss_dssp HHHHHTT-CCGGGEEEEESCTTTTHHHHHHHTCEEEEE
T ss_pred HHHHhcC-CCchhEEEECCCchhhhHHHHHcCCeEEEE
Confidence 14 4899999999996 7777777777766544
No 174
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=97.80 E-value=6.9e-07 Score=76.47 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=63.5
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH-hCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE-LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~-l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
....|++.++|+.+.+ ++.++|.|++...+++.++.. +|+.. .+..+ ++...... .|+-+.++.
T Consensus 90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~----~f~~~------~~~~~~~~----~Kp~~~~~~ 155 (206)
T 2b0c_A 90 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRD----AADHI------YLSQDLGM----RKPEARIYQ 155 (206)
T ss_dssp EEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHH----HCSEE------EEHHHHTC----CTTCHHHHH
T ss_pred cccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChhh----heeeE------EEecccCC----CCCCHHHHH
Confidence 4568999999999995 799999999988876654443 33310 01111 11111111 244433333
Q ss_pred c---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 248 Q---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 248 ~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
. .-+ .+++++++|+|++....+....|+.+..+..
T Consensus 156 ~~~~~~~-~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~ 193 (206)
T 2b0c_A 156 HVLQAEG-FSPSDTVFFDDNADNIEGANQLGITSILVKD 193 (206)
T ss_dssp HHHHHHT-CCGGGEEEEESCHHHHHHHHTTTCEEEECCS
T ss_pred HHHHHcC-CCHHHeEEeCCCHHHHHHHHHcCCeEEEecC
Confidence 2 114 4899999999999988888888988766643
No 175
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=97.79 E-value=3.7e-06 Score=73.77 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=66.7
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..|++.++|+.+.+.+.++|.|++...+++.+++.+|+. |+. .++..... ..|+-+.++..
T Consensus 117 ~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~----------f~~--~~~~~~~~----~~kp~~~~~~~~~~ 180 (254)
T 3umg_A 117 PWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNAGIP----------WDV--IIGSDINR----KYKPDPQAYLRTAQ 180 (254)
T ss_dssp BCTTHHHHHHHHHHHSEEEECSSSCHHHHHHHHHHHTCC----------CSC--CCCHHHHT----CCTTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHhCCCC----------eeE--EEEcCcCC----CCCCCHHHHHHHHH
Confidence 479999999999988999999999999999999988773 111 11111111 22554444433
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|+|+.....+....|+.+.-+.
T Consensus 181 ~lg-i~~~~~~~iGD~~~Di~~a~~aG~~~~~~~ 213 (254)
T 3umg_A 181 VLG-LHPGEVMLAAAHNGDLEAAHATGLATAFIL 213 (254)
T ss_dssp HTT-CCGGGEEEEESCHHHHHHHHHTTCEEEEEC
T ss_pred HcC-CChHHEEEEeCChHhHHHHHHCCCEEEEEe
Confidence 124 489999999999988888777887766654
No 176
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=97.77 E-value=4e-06 Score=80.78 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCcceEEEecCCceEeccCCCCC---------Cc-eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH-----hC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAEN---------PL-QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE-----LG 208 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~---------~~-~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~-----l~ 208 (332)
++.|+||||+||||++..-...+ .. -..-||+.++|+.+++ ++.++|.|+....+++..+++ ++
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~ 299 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLK 299 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSC
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccC
Confidence 58999999999999985321100 00 1235789999999998 699999999999999999987 33
Q ss_pred CCCCCCceEEEEecCCceEEEeeCCCCCcccccccccc----ccCCCcCCCCcEEEEeCCccccccCCCC--eeeecccc
Q 042485 209 VLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIW----DQFPEFYSSKNTIMFDDLRRNFVMNPQN--GLAIKPFR 282 (332)
Q Consensus 209 ~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~----~~~~~~~~~~~~iivDD~~~~~~~~p~N--gi~I~~f~ 282 (332)
... +..+ .. ..||-+..+ .++ + .+++++++|+|++.-....... |+.|..+.
T Consensus 300 l~~-----~~~v-------~~--------~~KPKp~~l~~al~~L-g-l~pee~v~VGDs~~Di~aaraalpgV~vi~~p 357 (387)
T 3nvb_A 300 LDD-----IAVF-------VA--------NWENKADNIRTIQRTL-N-IGFDSMVFLDDNPFERNMVREHVPGVTVPELP 357 (387)
T ss_dssp GGG-----CSEE-------EE--------ESSCHHHHHHHHHHHH-T-CCGGGEEEECSCHHHHHHHHHHSTTCBCCCCC
T ss_pred ccC-----ccEE-------Ee--------CCCCcHHHHHHHHHHh-C-cCcccEEEECCCHHHHHHHHhcCCCeEEEEcC
Confidence 321 1111 00 113322222 222 4 4899999999999887665555 67777664
Q ss_pred C
Q 042485 283 K 283 (332)
Q Consensus 283 ~ 283 (332)
.
T Consensus 358 ~ 358 (387)
T 3nvb_A 358 E 358 (387)
T ss_dssp S
T ss_pred c
Confidence 3
No 177
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=97.76 E-value=4.2e-06 Score=71.91 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=65.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+ .+.++|.|++...+++.+++.+++... +..++ +..... ..|+-+..+..
T Consensus 94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~~----~~~~~------~~~~~~----~~kp~~~~~~~~ 159 (226)
T 1te2_A 94 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDS----FDALA------SAEKLP----YSKPHPQVYLDC 159 (226)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGG----CSEEE------ECTTSS----CCTTSTHHHHHH
T ss_pred CcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcHhh----CcEEE------eccccC----CCCCChHHHHHH
Confidence 467999999999987 599999999999999999988876311 11111 111111 12432222221
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++++|.|+.....+....|+.+..+..
T Consensus 160 ~~~~~-i~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~ 195 (226)
T 1te2_A 160 AAKLG-VDPLTCVALEDSVNGMIASKAARMRSIVVPA 195 (226)
T ss_dssp HHHHT-SCGGGEEEEESSHHHHHHHHHTTCEEEECCC
T ss_pred HHHcC-CCHHHeEEEeCCHHHHHHHHHcCCEEEEEcC
Confidence 114 4899999999999888887777877666543
No 178
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=97.75 E-value=2.7e-05 Score=68.81 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=62.7
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCC---cccccccc-c
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGI---FDCKPLGL-I 245 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~---~~~KdL~~-i 245 (332)
..+||+.++|+.|++ ++.++|.|++...+++.+++ ++.. . ..+.+.- .. ...+. ...|+-+. +
T Consensus 77 ~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~--~l~~-~-~~v~~~~------~~--~~~~~~~~~~~kp~p~~~ 144 (236)
T 2fea_A 77 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLE--GIVE-K-DRIYCNH------AS--FDNDYIHIDWPHSCKGTC 144 (236)
T ss_dssp CBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHT--TTSC-G-GGEEEEE------EE--CSSSBCEEECTTCCCTTC
T ss_pred CCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHh--cCCC-C-CeEEeee------eE--EcCCceEEecCCCCcccc
Confidence 478999999999997 79999999999999999887 5432 1 1121110 00 00000 01233322 1
Q ss_pred c-----------ccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 246 W-----------DQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 246 ~-----------~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
+ .++ + .+++++++|+|+.....+....|+.+..
T Consensus 145 ~~~~~~~K~~~~~~~-~-~~~~~~~~vGDs~~Di~~a~~aG~~~~~ 188 (236)
T 2fea_A 145 SNQCGCCKPSVIHEL-S-EPNQYIIMIGDSVTDVEAAKLSDLCFAR 188 (236)
T ss_dssp CSCCSSCHHHHHHHH-C-CTTCEEEEEECCGGGHHHHHTCSEEEEC
T ss_pred ccccCCcHHHHHHHH-h-ccCCeEEEEeCChHHHHHHHhCCeeeec
Confidence 2 112 3 4899999999999888887788887753
No 179
>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A
Probab=97.74 E-value=3.4e-06 Score=72.90 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=34.6
Q ss_pred ecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 171 LMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
...||+.++|+.|++ ++.++|.|++...+++.+++.+++.
T Consensus 75 ~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 116 (197)
T 1q92_A 75 EPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWV 116 (197)
T ss_dssp CBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHHhchH
Confidence 467999999999997 6999999999999888888877653
No 180
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=97.72 E-value=3.2e-05 Score=66.42 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=73.2
Q ss_pred CcceEEEecCCceEeccCCC--CCC---ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--ENP---LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--~~~---~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
+.++++||+||||++..... ... .+..++ ..+|+.+.+ ++.++|.|+.+...++.+++++|+. .
T Consensus 25 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d--~~~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~--------~ 94 (188)
T 2r8e_A 25 NIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRD--GYGIRCALTSDIEVAIITGRKAKLVEDRCATLGIT--------H 94 (188)
T ss_dssp TCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHH--HHHHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCC--------E
T ss_pred cCCEEEEeCCCCcCCCCEEecCCCcEEEEeeccc--HHHHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCc--------e
Confidence 56899999999999853210 011 011112 237889887 6999999999999999999998874 2
Q ss_pred EecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+++. ... ...-+..+..++ + .+++++++|.|+..-..+....|+.+...
T Consensus 95 ~~~~---------~kp--k~~~~~~~~~~~-g-~~~~~~~~iGD~~~Di~~a~~ag~~~~~~ 143 (188)
T 2r8e_A 95 LYQG---------QSN--KLIAFSDLLEKL-A-IAPENVAYVGDDLIDWPVMEKVGLSVAVA 143 (188)
T ss_dssp EECS---------CSC--SHHHHHHHHHHH-T-CCGGGEEEEESSGGGHHHHTTSSEEEECT
T ss_pred eecC---------CCC--CHHHHHHHHHHc-C-CCHHHEEEECCCHHHHHHHHHCCCEEEec
Confidence 2221 000 001122221112 3 47899999999998888777788877544
No 181
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=97.71 E-value=1.1e-05 Score=73.15 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHh--CCC-----CCCCceEEEEecCCceEEEeeCCCCCcccccccc
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEEL--GVL-----TNPNYKITALLDHLAMITVQSDSRGIFDCKPLGL 244 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l--~~~-----~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~ 244 (332)
..||+.++|+. .|.++|.|+++...++.+++.+ |.. .+-...+..+|+. .+ .| .||-+.
T Consensus 126 ~~pgv~e~L~~---g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~--~~------~g---~KP~p~ 191 (253)
T 2g80_A 126 VYADAIDFIKR---KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDI--NT------SG---KKTETQ 191 (253)
T ss_dssp CCHHHHHHHHH---CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECH--HH------HC---CTTCHH
T ss_pred CCCCHHHHHHc---CCEEEEEeCCCHHHHHHHHHhhcccccccccccchHhhcceEEee--ec------cC---CCCCHH
Confidence 46899999998 8999999999999999988865 300 0001112233332 00 02 288777
Q ss_pred ccccC---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 245 IWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 245 i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+|... -+ .++++||+|+|++.........|+...-+
T Consensus 192 ~~~~a~~~lg-~~p~~~l~vgDs~~di~aA~~aG~~~i~v 230 (253)
T 2g80_A 192 SYANILRDIG-AKASEVLFLSDNPLELDAAAGVGIATGLA 230 (253)
T ss_dssp HHHHHHHHHT-CCGGGEEEEESCHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHcCCEEEEE
Confidence 77651 14 48999999999999888888888876554
No 182
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=1.3e-05 Score=72.54 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=65.7
Q ss_pred ecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...|++.++|+.+++ .+.++|.|++...+++.+++.+++. . +. .++ +......+ |+-+..+..
T Consensus 114 ~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~-~--f~--~i~------~~~~~~~~----kp~~~~~~~ 178 (275)
T 2qlt_A 114 IEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK-R--PE--YFI------TANDVKQG----KPHPEPYLK 178 (275)
T ss_dssp EECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC-C--CS--SEE------CGGGCSSC----TTSSHHHHH
T ss_pred CcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC-c--cC--EEE------EcccCCCC----CCChHHHHH
Confidence 468999999999997 4899999999999999999988763 1 11 111 11111122 443333322
Q ss_pred ---CCCcC-------CCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 ---FPEFY-------SSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ---~~~~~-------~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ . ++++|++|.|++.-..+....|+.+..+.
T Consensus 179 ~~~~lg-i~~~~~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v~ 221 (275)
T 2qlt_A 179 GRNGLG-FPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIA 221 (275)
T ss_dssp HHHHTT-CCCCSSCGGGSCEEEEESSHHHHHHHHHTTCEEEEES
T ss_pred HHHHcC-CCccccCCCcceEEEEeCCHHHHHHHHHcCCEEEEEC
Confidence 113 4 78999999999988888777887665554
No 183
>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}
Probab=97.67 E-value=8.4e-05 Score=62.84 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=23.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCC
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSAT 195 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas 195 (332)
...||+.++|+.|++.+.++|.|++
T Consensus 69 ~~~pg~~e~L~~L~~~~~~~i~T~~ 93 (180)
T 3bwv_A 69 DVMPHAQEVVKQLNEHYDIYIATAA 93 (180)
T ss_dssp CBCTTHHHHHHHHTTTSEEEEEECC
T ss_pred CCCcCHHHHHHHHHhcCCEEEEeCC
Confidence 4679999999999988999999998
No 184
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=97.67 E-value=1.4e-05 Score=67.45 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=59.6
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
+..+|++.++|+.+.+ .+.++|.|++...+++.+ +.+++. .+ ...+.-....++...+... ....-+..
T Consensus 78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~-~k~~~l~~---- 147 (201)
T 4ap9_A 78 VNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDE---FM-ANRAIFEDGKFQGIRLRFR-DKGEFLKR---- 147 (201)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSE---EE-EEEEEEETTEEEEEECCSS-CHHHHHGG----
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCch---hh-eeeEEeeCCceECCcCCcc-CHHHHHHh----
Confidence 3578999999999998 599999999999988887 777653 11 1111100111111000000 00011122
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
++++++++|.|++.-..+....|+.|
T Consensus 148 ----l~~~~~i~iGD~~~Di~~~~~ag~~v 173 (201)
T 4ap9_A 148 ----FRDGFILAMGDGYADAKMFERADMGI 173 (201)
T ss_dssp ----GTTSCEEEEECTTCCHHHHHHCSEEE
T ss_pred ----cCcCcEEEEeCCHHHHHHHHhCCceE
Confidence 37899999999998888777777765
No 185
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=97.65 E-value=1.3e-05 Score=68.37 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=71.1
Q ss_pred CcceEEEecCCceEeccCCC--CCC---ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--ENP---LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--~~~---~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
..++++||+||||++..... ... ....++++ +|+.+++ ++.++|.|++...+++.+++++|+.
T Consensus 11 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~--------- 79 (176)
T 3mmz_A 11 DIDAVVLDFDGTQTDDRVLIDSDGREFVSVHRGDGL--GIAALRKSGLTMLILSTEQNPVVAARARKLKIP--------- 79 (176)
T ss_dssp GCSEEEECCTTTTSCSCCEECTTCCEEEEEEHHHHH--HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC---------
T ss_pred cCCEEEEeCCCCcCcCCEeecCCccHhHhcccccHH--HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe---------
Confidence 46799999999999942210 000 12233333 6899987 7999999999999999999999873
Q ss_pred EecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+++. ... ...-+..+...+ + .+++++++|-|+..-..+....|+.+.
T Consensus 80 ~~~~---------~~~--k~~~l~~~~~~~-~-~~~~~~~~vGD~~nD~~~~~~ag~~v~ 126 (176)
T 3mmz_A 80 VLHG---------IDR--KDLALKQWCEEQ-G-IAPERVLYVGNDVNDLPCFALVGWPVA 126 (176)
T ss_dssp EEES---------CSC--HHHHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred eEeC---------CCC--hHHHHHHHHHHc-C-CCHHHEEEEcCCHHHHHHHHHCCCeEE
Confidence 2211 011 001122222222 3 489999999999877776666666554
No 186
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=97.61 E-value=2.3e-05 Score=65.93 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=63.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
..+|++.++|+.+.+ ++.++|.|++...++. .++.+++.. .+..++.. ...+ ..|+-+.++..
T Consensus 85 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~~----~f~~~~~~--------~~~~--~~Kp~~~~~~~~ 149 (207)
T 2go7_A 85 VLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVES----YFTEILTS--------QSGF--VRKPSPEAATYL 149 (207)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCGG----GEEEEECG--------GGCC--CCTTSSHHHHHH
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCchh----heeeEEec--------CcCC--CCCCCcHHHHHH
Confidence 368999999999998 5999999999999999 888876631 11222111 1111 12443333322
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|+.....+....|+.+..+.
T Consensus 150 ~~~~~-i~~~~~~~iGD~~nDi~~~~~aG~~~i~~~ 184 (207)
T 2go7_A 150 LDKYQ-LNSDNTYYIGDRTLDVEFAQNSGIQSINFL 184 (207)
T ss_dssp HHHHT-CCGGGEEEEESSHHHHHHHHHHTCEEEESS
T ss_pred HHHhC-CCcccEEEECCCHHHHHHHHHCCCeEEEEe
Confidence 114 489999999999888877766777644443
No 187
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.59 E-value=0.00034 Score=54.15 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCceEEEEEEe-CC-eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 12 SSEELTLTVKW-SG-KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 12 ~~~~i~i~vk~-~g-~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+...|+|+|+. .| +...+.+..++++.-|...-++..|+++..-+++| .|..+..+.|-.++++.+|+.|-++|
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF---DGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE---TTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 45678888885 45 36789999999999999999999999999999998 89989888999999999999998875
No 188
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=97.57 E-value=1.7e-05 Score=67.99 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=62.1
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..|++.++|+.+.+ .+.++|.|++ ..++.+++.+++.. .+..++.. ... ...|+-+..+..
T Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~~----~f~~~~~~--------~~~--~~~Kp~~~~~~~~~ 155 (221)
T 2wf7_A 92 VYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLTG----YFDAIADP--------AEV--AASKPAPDIFIAAA 155 (221)
T ss_dssp BCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCGG----GCSEECCT--------TTS--SSCTTSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChHH----HcceEecc--------ccC--CCCCCChHHHHHHH
Confidence 57999999999987 6999999998 56777888776531 11111110 111 123554333332
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .++++|++|+|++....+....|+.+..+
T Consensus 156 ~~lg-i~~~~~i~iGD~~nDi~~a~~aG~~~~~~ 188 (221)
T 2wf7_A 156 HAVG-VAPSESIGLEDSQAGIQAIKDSGALPIGV 188 (221)
T ss_dssp HHTT-CCGGGEEEEESSHHHHHHHHHHTCEEEEE
T ss_pred HHcC-CChhHeEEEeCCHHHHHHHHHCCCEEEEE
Confidence 114 48999999999998888877788876655
No 189
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
Probab=97.53 E-value=3.3e-05 Score=66.22 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=57.9
Q ss_pred eecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
....||+.++|+.+++ ++.++|.|++...+++.+++.+|+ |+. ++ +. .-+..+
T Consensus 72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl-----------f~~--i~-------~~---~~~~~~-- 126 (193)
T 2i7d_A 72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW-----------VEQ--HL-------GP---QFVERI-- 126 (193)
T ss_dssp CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH-----------HHH--HH-------CH---HHHTTE--
T ss_pred CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc-----------hhh--hc-------CH---HHHHHc--
Confidence 3468999999999998 599999999999999999888766 111 11 00 012222
Q ss_pred cCCCcCCCCcEEEEeCCccc----cccCC-CCeeeecccc
Q 042485 248 QFPEFYSSKNTIMFDDLRRN----FVMNP-QNGLAIKPFR 282 (332)
Q Consensus 248 ~~~~~~~~~~~iivDD~~~~----~~~~p-~Ngi~I~~f~ 282 (332)
+ .+++++++|.|+... ..... ..|+...-|.
T Consensus 127 ---~-~~~~~~~~vgDs~~dD~~~i~~A~~~aG~~~i~~~ 162 (193)
T 2i7d_A 127 ---I-LTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFT 162 (193)
T ss_dssp ---E-ECSCGGGBCCSEEEESSSCCCSSCSSCSSEEEEEC
T ss_pred ---C-CCcccEEEECCchhhCcHHHhhcccccccceEEEE
Confidence 3 378888887777666 55565 6676665554
No 190
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=97.53 E-value=5.7e-05 Score=67.60 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=62.7
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
..+||+.++|+.+.+ .+.++|.|+....+++.+++.+|+. .+++. +. +.......|+++..
T Consensus 144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~--------~~f~~--~~----~~~k~~~~k~~~~~---- 205 (280)
T 3skx_A 144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD--------DYFAE--VL----PHEKAEKVKEVQQK---- 205 (280)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS--------EEECS--CC----GGGHHHHHHHHHTT----
T ss_pred CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCh--------hHhHh--cC----HHHHHHHHHHHHhc----
Confidence 578999999999998 6999999999999999999998874 23332 11 11112345666554
Q ss_pred CCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 250 PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
+ ++++|-|+..-..+....|+.|..
T Consensus 206 ---~---~~~~vGD~~nDi~~~~~Ag~~va~ 230 (280)
T 3skx_A 206 ---Y---VTAMVGDGVNDAPALAQADVGIAI 230 (280)
T ss_dssp ---S---CEEEEECTTTTHHHHHHSSEEEEC
T ss_pred ---C---CEEEEeCCchhHHHHHhCCceEEe
Confidence 2 689999998777776667765543
No 191
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=97.52 E-value=8.7e-05 Score=65.58 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=63.0
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..|++.++|+.+...+.++|.|++...++..+++.+++... |+. .++ . + |+-+..+..
T Consensus 113 ~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~~--------f~~--i~~--~---~----kp~~~~~~~~~~ 173 (251)
T 2pke_A 113 VIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDL--------FPR--IEV--V---S----EKDPQTYARVLS 173 (251)
T ss_dssp BCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGGGT--------CCC--EEE--E---S----CCSHHHHHHHHH
T ss_pred cCccHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCcHHh--------Cce--eee--e---C----CCCHHHHHHHHH
Confidence 56999999999997799999999999999999998877421 111 111 0 1 222222211
Q ss_pred CCCcCCCCcEEEEeCCc-cccccCCCCeeeecccc
Q 042485 249 FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .++++|++|.|++ .-..+....|+.+.-+.
T Consensus 174 ~l~-~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~ 207 (251)
T 2pke_A 174 EFD-LPAERFVMIGNSLRSDVEPVLAIGGWGIYTP 207 (251)
T ss_dssp HHT-CCGGGEEEEESCCCCCCHHHHHTTCEEEECC
T ss_pred HhC-cCchhEEEECCCchhhHHHHHHCCCEEEEEC
Confidence 114 4899999999999 77777777787766553
No 192
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=97.50 E-value=6.2e-06 Score=71.56 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=58.6
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
...|++.++|+.+.+.+.++|.|++... ++.+++.. .+..++ +......+ |+-+.++..
T Consensus 105 ~~~~~~~~~l~~l~~~~~~~i~t~~~~~-----l~~~~l~~----~f~~~~------~~~~~~~~----kp~~~~~~~~~ 165 (230)
T 3vay_A 105 QIFPEVQPTLEILAKTFTLGVITNGNAD-----VRRLGLAD----YFAFAL------CAEDLGIG----KPDPAPFLEAL 165 (230)
T ss_dssp CBCTTHHHHHHHHHTTSEEEEEESSCCC-----GGGSTTGG----GCSEEE------EHHHHTCC----TTSHHHHHHHH
T ss_pred ccCcCHHHHHHHHHhCCeEEEEECCchh-----hhhcCcHH----HeeeeE------EccccCCC----CcCHHHHHHHH
Confidence 3789999999999988999999998865 44455431 111221 11111222 554444332
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeeeecccc
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|+. ....+....|+.+.-+.
T Consensus 166 ~~~~-~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~ 200 (230)
T 3vay_A 166 RRAK-VDASAAVHVGDHPSDDIAGAQQAGMRAIWYN 200 (230)
T ss_dssp HHHT-CCGGGEEEEESCTTTTHHHHHHTTCEEEEEC
T ss_pred HHhC-CCchheEEEeCChHHHHHHHHHCCCEEEEEc
Confidence 114 4899999999998 77777777787655543
No 193
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=97.49 E-value=3.8e-06 Score=74.01 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=74.3
Q ss_pred CcceEEEecCCceEeccCCC---------C--CC----------------ceecCCcHHHHHHHHHh-CCcEEEEcCCcH
Q 042485 146 GKKLLVLDIDYTLFDHRSTA---------E--NP----------------LQLMRPYLHEFLTAAYA-EYDIMIWSATSM 197 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~---------~--~~----------------~~~~RP~l~eFL~~l~~-~yeivI~Tas~~ 197 (332)
..+.++|||||||+++.... . .+ .....|++.++|+.|++ ++.++|.|++..
T Consensus 36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~ 115 (211)
T 2b82_A 36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP 115 (211)
T ss_dssp CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 46899999999999974310 0 00 11246799999999987 799999999987
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 198 KWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 198 ~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
..++.+++.|.-..+ .+........+ + ..|+-+.++...-.+++. +++|+|++.........|+.
T Consensus 116 ~~~~~~l~~l~~~f~------~i~~~~~~~~~-----~--~~KP~p~~~~~~~~~~g~--~l~VGDs~~Di~aA~~aG~~ 180 (211)
T 2b82_A 116 TKTETVSKTLADNFH------IPATNMNPVIF-----A--GDKPGQNTKSQWLQDKNI--RIFYGDSDNDITAARDVGAR 180 (211)
T ss_dssp CSSCCHHHHHHHHTT------CCTTTBCCCEE-----C--CCCTTCCCSHHHHHHTTE--EEEEESSHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhcC------ccccccchhhh-----c--CCCCCHHHHHHHHHHCCC--EEEEECCHHHHHHHHHCCCe
Confidence 766666654210000 00000000000 1 126655555442222344 99999999888887778877
Q ss_pred ecccc
Q 042485 278 IKPFR 282 (332)
Q Consensus 278 I~~f~ 282 (332)
..-+.
T Consensus 181 ~i~v~ 185 (211)
T 2b82_A 181 GIRIL 185 (211)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 65543
No 194
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=97.49 E-value=7.6e-05 Score=67.93 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=51.5
Q ss_pred CcCCcceEEEecCCceEeccCC----------CCCC--------ceecCCcHHHHHHHHHh-CCcEEEEcCCc---HHHH
Q 042485 143 SREGKKLLVLDIDYTLFDHRST----------AENP--------LQLMRPYLHEFLTAAYA-EYDIMIWSATS---MKWV 200 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~~----------~~~~--------~~~~RP~l~eFL~~l~~-~yeivI~Tas~---~~ya 200 (332)
+..+++++||||||||+++... .... .....||+.++|+.|.+ ++.++|.|+.. ...+
T Consensus 55 ~~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 55 GTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CCSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred cCCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 3457889999999999998410 0000 14577999999999987 69999999988 5566
Q ss_pred HHHHHHhCCC
Q 042485 201 ELKMEELGVL 210 (332)
Q Consensus 201 ~~~l~~l~~~ 210 (332)
...|+.+|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 6777877874
No 195
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=97.48 E-value=5.2e-05 Score=64.45 Aligned_cols=103 Identities=17% Similarity=0.017 Sum_probs=62.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEee---CCCCCcccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQS---DSRGIFDCKPLGLIW 246 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~---~~~g~~~~KdL~~i~ 246 (332)
...|++.++|+.+.+ ++.++|+|+....++...++.+++.. .........+ ..++... ...+......+..+.
T Consensus 76 ~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~K~~~l~~~~ 152 (211)
T 1l7m_A 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDY-AFANRLIVKD--GKLTGDVEGEVLKENAKGEILEKIA 152 (211)
T ss_dssp CBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSE-EEEEEEEEET--TEEEEEEECSSCSTTHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCe-EEEeeeEEEC--CEEcCCcccCccCCccHHHHHHHHH
Confidence 357999999999988 69999999999999988888887631 0000011101 0111000 001111111222222
Q ss_pred ccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 247 DQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 247 ~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.++ + .++++|++|-|+..-..+....|+.+
T Consensus 153 ~~l-g-i~~~~~~~iGD~~~Di~~~~~ag~~~ 182 (211)
T 1l7m_A 153 KIE-G-INLEDTVAVGDGANDISMFKKAGLKI 182 (211)
T ss_dssp HHH-T-CCGGGEEEEECSGGGHHHHHHCSEEE
T ss_pred HHc-C-CCHHHEEEEecChhHHHHHHHCCCEE
Confidence 222 4 48999999999998887777778765
No 196
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=97.44 E-value=8.9e-06 Score=70.37 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=62.3
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccc----cccc
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPL----GLIW 246 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL----~~i~ 246 (332)
...|++.++|+.+.. .++|.|++...++..+++.+++...-. . .+ ++......+ .+|+- ..+.
T Consensus 87 ~~~~~~~~~l~~l~~--~~~i~s~~~~~~~~~~l~~~~l~~~~~-~--~~------~~~~~~~~~--~~kpk~~~~~~~~ 153 (229)
T 2fdr_A 87 KIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLKPYFA-P--HI------YSAKDLGAD--RVKPKPDIFLHGA 153 (229)
T ss_dssp CBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCGGGTT-T--CE------EEHHHHCTT--CCTTSSHHHHHHH
T ss_pred ccCcCHHHHHHHhCC--CEEEEECCChhHHHHHHHhCChHHhcc-c--eE------EeccccccC--CCCcCHHHHHHHH
Confidence 357889999988875 899999999999999999887641100 1 11 111111111 01332 2222
Q ss_pred ccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 247 DQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 247 ~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.++ + .++++|++|+|+.....+....|+.+..+..
T Consensus 154 ~~l-~-~~~~~~i~iGD~~~Di~~a~~aG~~~i~~~~ 188 (229)
T 2fdr_A 154 AQF-G-VSPDRVVVVEDSVHGIHGARAAGMRVIGFTG 188 (229)
T ss_dssp HHH-T-CCGGGEEEEESSHHHHHHHHHTTCEEEEECC
T ss_pred HHc-C-CChhHeEEEcCCHHHHHHHHHCCCEEEEEec
Confidence 222 4 4899999999999888887778877555543
No 197
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.36 E-value=0.00037 Score=52.10 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=57.9
Q ss_pred ceEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CceEeeccCCCcccCcccccccCCCCCCceEE
Q 042485 14 EELTLTVK---WSGKEYTVRVCGDDSVAELKRRICELTNVLPK-----RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMT 85 (332)
Q Consensus 14 ~~i~i~vk---~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~-----~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~ 85 (332)
|-|+|++- |.++.|++.++...||..|.+.+.+..+++.. .-|+.+ +|..+.++..|++++|++|+.|-
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~N---K~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVN---KDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGG---GTEEEETTSBTGGGTCCTTCEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEec---CCEEEcCCCEEeeCCcCCCCEEE
Confidence 45666666 68999999999999999999999999998753 223443 67788899999999999999886
Q ss_pred E
Q 042485 86 M 86 (332)
Q Consensus 86 l 86 (332)
+
T Consensus 80 i 80 (81)
T 2bps_A 80 I 80 (81)
T ss_dssp E
T ss_pred E
Confidence 4
No 198
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A
Probab=97.33 E-value=0.00011 Score=65.38 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=61.7
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccc----
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIW---- 246 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~---- 246 (332)
..|++.++|+.+.+ .+.++|.|++...++..+++.+++.... ++. .++......+ |+-+..+
T Consensus 104 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~~~-------~~~--~~~~~~~~~~----kp~~~~~~~~~ 170 (267)
T 1swv_A 104 PINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYK-------PDF--LVTPDDVPAG----RPYPWMCYKNA 170 (267)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTTCC-------CSC--CBCGGGSSCC----TTSSHHHHHHH
T ss_pred cCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcccC-------hHh--eecCCccCCC----CCCHHHHHHHH
Confidence 47899999999987 5999999999999999998887653210 010 1111111112 3322222
Q ss_pred ccCCCcCCC-CcEEEEeCCccccccCCCCeeeeccc
Q 042485 247 DQFPEFYSS-KNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 247 ~~~~~~~~~-~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.++ + .++ ++|++|.|+..-..+....|+.+..+
T Consensus 171 ~~l-g-i~~~~~~i~iGD~~nDi~~a~~aG~~~i~v 204 (267)
T 1swv_A 171 MEL-G-VYPMNHMIKVGDTVSDMKEGRNAGMWTVGV 204 (267)
T ss_dssp HHH-T-CCSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred HHh-C-CCCCcCEEEEeCCHHHHHHHHHCCCEEEEE
Confidence 222 4 377 99999999998887777778654444
No 199
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=97.28 E-value=9.3e-05 Score=69.20 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=66.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEec-CCceEEEe-eCCCCCcccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLD-HLAMITVQ-SDSRGIFDCKPLGLIW 246 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d-~~~~~~~~-~~~~g~~~~KdL~~i~ 246 (332)
+..+|++.++|+.+.+ .+.++|.|++...+++.+++++|+.. .+...++ ....++.. .... ..-|+-+..+
T Consensus 177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~----~~~~~l~~~d~~~tg~~~~~~--~~~kpk~~~~ 250 (335)
T 3n28_A 177 LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDY----AQSNTLEIVSGKLTGQVLGEV--VSAQTKADIL 250 (335)
T ss_dssp CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE----EEEEEEEEETTEEEEEEESCC--CCHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCe----EEeeeeEeeCCeeeeeecccc--cChhhhHHHH
Confidence 3578999999999998 69999999999999999999998841 1111110 01111111 0111 1124433333
Q ss_pred cc---CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 247 DQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 247 ~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.. .-+ .++++|++|.|+..-..+....|+.|.
T Consensus 251 ~~~~~~lg-i~~~~~v~vGDs~nDi~~a~~aG~~va 285 (335)
T 3n28_A 251 LTLAQQYD-VEIHNTVAVGDGANDLVMMAAAGLGVA 285 (335)
T ss_dssp HHHHHHHT-CCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred HHHHHHcC-CChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 22 114 488999999999988877777777655
No 200
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.27 E-value=0.0019 Score=49.49 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=69.8
Q ss_pred CCCCCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 9 TASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 9 ~~~~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.......|+|.|+..|....+.+-.++...-|....++..|+++.+-+++| .|.-+.++.|-.++++.+|+.|-++-
T Consensus 15 ~~~~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf---DG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 15 LPETPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF---GETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCSCCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE---TTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCCCCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE---CCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 344456699999988888889999999999999999999999999999998 88888888899999999999998876
Q ss_pred cC
Q 042485 89 TV 90 (332)
Q Consensus 89 s~ 90 (332)
.+
T Consensus 92 ~~ 93 (95)
T 2l76_A 92 LT 93 (95)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 201
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.26 E-value=4.2e-05 Score=66.99 Aligned_cols=76 Identities=9% Similarity=0.056 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
..-|+|+|...|....+.|..++++..|++..++..|+++.+++++| .|+.+.++.|..++++.+|++|.++-...
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 44577777666777888999999999999999999999999999998 89999999999999999999999885443
No 202
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=97.21 E-value=4.9e-05 Score=73.90 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=63.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCC------cHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSAT------SMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLG 243 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas------~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~ 243 (332)
...|++.++|+.|++ +|.++|.|++ ....+...+..+.- . +..+ ++..+.. ..||-+
T Consensus 100 ~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~----~--fd~i------~~~~~~~----~~KP~p 163 (555)
T 3i28_A 100 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKM----H--FDFL------IESCQVG----MVKPEP 163 (555)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHT----T--SSEE------EEHHHHT----CCTTCH
T ss_pred CcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhh----h--eeEE------EeccccC----CCCCCH
Confidence 467999999999998 5999999998 55555444332211 0 1112 1111122 237777
Q ss_pred ccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 244 LIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 244 ~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.+|.. .-+ .+++++++|+|+..........|+...-+..
T Consensus 164 ~~~~~~~~~lg-~~p~~~~~v~D~~~di~~a~~aG~~~~~~~~ 205 (555)
T 3i28_A 164 QIYKFLLDTLK-ASPSEVVFLDDIGANLKPARDLGMVTILVQD 205 (555)
T ss_dssp HHHHHHHHHHT-CCGGGEEEEESCHHHHHHHHHHTCEEEECSS
T ss_pred HHHHHHHHHcC-CChhHEEEECCcHHHHHHHHHcCCEEEEECC
Confidence 77655 124 4899999999999888888788887666643
No 203
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.16 E-value=0.0028 Score=46.60 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=63.5
Q ss_pred ceEEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCC-CceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 14 EELTLTVKWS-GKEYTVRVCGDDSVAELKRRICELTNVLPK-RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 14 ~~i~i~vk~~-g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~-~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..|++-...+ ...+.+.|..++||.+|-..-...-||+++ .-+|+| .|..+..+.++.++.+.+|+.|-+|.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF---DGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF---EGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE---TTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE---cCcccCccCChhhhCCcCCceeeeee
Confidence 3567777753 456889999999999999999999999999 999998 99999999999999999999998773
No 204
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.07 E-value=0.00074 Score=54.78 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=56.3
Q ss_pred EEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CceEe
Q 042485 17 TLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPK-------------------------------------RQKLL 58 (332)
Q Consensus 17 ~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~-------------------------------------~QkLl 58 (332)
.++|+ ..|...++.|+.+.||.+++..|+...||+.. +|||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58888 67888999999999999999999999999855 45553
Q ss_pred eccCCCcccCcccccccCCCCCCceEEE
Q 042485 59 YPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 59 ~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
.-- ++..++++.+|.+.||.+|++|+|
T Consensus 93 ~dd-~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 93 TDD-ELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CSS-SEEEECSSSCHHHHTCCTTSEEEE
T ss_pred ccC-CCCcccCCCcHHHcCCCCCCEEEE
Confidence 100 234678889999999999999876
No 205
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=96.99 E-value=0.0012 Score=54.54 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=41.6
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~ 205 (332)
+.+++++||||||+.+.... ....-|+..+.|+.+.+ ++.++|+|.-+.+....+++
T Consensus 2 ~~k~i~~DlDGTL~~~~~~~---i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~ 59 (142)
T 2obb_A 2 NAMTIAVDFDGTIVEHRYPR---IGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIE 59 (142)
T ss_dssp CCCEEEECCBTTTBCSCTTS---CCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred CCeEEEEECcCCCCCCCCcc---ccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHH
Confidence 36799999999999864211 11245899999999987 79999999987544444433
No 206
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=96.90 E-value=0.00087 Score=61.13 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=52.5
Q ss_pred CcCCcceEEEecCCceEeccC---------CCC----------CCceecCCcHHHHHHHHHh-CCcEEEEcCCcH----H
Q 042485 143 SREGKKLLVLDIDYTLFDHRS---------TAE----------NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM----K 198 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~---------~~~----------~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~----~ 198 (332)
+..+++++|||+||||++... ... .......||+.+||+.|.+ ++.|+|.|+-+. .
T Consensus 54 ~~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~ 133 (262)
T 3ocu_A 54 AKGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKS 133 (262)
T ss_dssp CTTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHH
T ss_pred cCCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHH
Confidence 345778999999999998852 111 1235688999999999987 799999997754 4
Q ss_pred HHHHHHHHhCCC
Q 042485 199 WVELKMEELGVL 210 (332)
Q Consensus 199 ya~~~l~~l~~~ 210 (332)
.+...|+.+|+.
T Consensus 134 ~T~~~L~~lGi~ 145 (262)
T 3ocu_A 134 GTIDDMKRLGFN 145 (262)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHcCcC
Confidence 777788888884
No 207
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.89 E-value=0.0039 Score=54.86 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=69.8
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
+...|+|+|+..|....+.+..++++.-|++..++..|+++.+++++| .|..+.++.+-.++.+.+|+.|-++....
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEeccCCCChHHhhhcccccchhhcccc
Confidence 455788888877777889999999999999999999999999999998 89999999999999999999999886654
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
+
T Consensus 95 G 95 (209)
T 3uf8_A 95 G 95 (209)
T ss_dssp T
T ss_pred c
Confidence 4
No 208
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=96.81 E-value=0.00062 Score=62.01 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=50.4
Q ss_pred CcceEEEecCCceEeccCC---------CC----------CCceecCCcHHHHHHHHHh-CCcEEEEcCCcH----HHHH
Q 042485 146 GKKLLVLDIDYTLFDHRST---------AE----------NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM----KWVE 201 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~---------~~----------~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~----~ya~ 201 (332)
.++++|||+||||++...- .. .......||+.+||+.|.+ ++.|+|.|+-.. ..+.
T Consensus 57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~ 136 (260)
T 3pct_A 57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV 136 (260)
T ss_dssp -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred CCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Confidence 4569999999999988521 10 2235688999999999987 799999998765 4777
Q ss_pred HHHHHhCCC
Q 042485 202 LKMEELGVL 210 (332)
Q Consensus 202 ~~l~~l~~~ 210 (332)
..|+.+|+.
T Consensus 137 ~~L~~lGi~ 145 (260)
T 3pct_A 137 DDMKRLGFT 145 (260)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCcC
Confidence 788888884
No 209
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.80 E-value=0.0022 Score=48.59 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=63.5
Q ss_pred EEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 17 TLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 17 ~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.|+|- .++...+|.+++++|+.++-++-.++.|+.+++=-|.+ +++.++-+.++.-.||.+|++|.|+-+...
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 56666 47889999999999999999999999999998777776 789998888999999999999999865443
No 210
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.66 E-value=0.00029 Score=66.85 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
+...|+|+|+..|....+.|..++++..|+++.++..|+++.+++++| .|+.+.++.|..++++++|+.|.++-..
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeECCCCCChHHcCCCccchhhhhhcc
Confidence 345688888877777788999999999999999999999999999998 8999999999999999999999877543
No 211
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.65 E-value=0.013 Score=43.68 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=57.9
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc---CcccccccCCCCCCceEEEE
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA---DDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l---~d~~~L~~~~i~~g~~l~l~ 87 (332)
+....+|.|+. .|....-....++||.+|.+.|.+ .+.++...+|+- -+..+.+ +.+.+|.++||.++..|+|-
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t-~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLS-TFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEEC-SSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEe-CCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 44577888995 576777789999999999999998 678888888873 1134545 34689999999999988863
No 212
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=96.62 E-value=0.004 Score=55.64 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcC---CcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSA---TSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Ta---s~~~ya~~~l~~l~~~ 210 (332)
..|+++|||||||+++.. .. |+..++|+.+.+ ...+++.|. -+..-+...++.+|+.
T Consensus 4 ~~kli~~DlDGTLl~~~~-------~i-~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKS-------RI-PAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCCEEEECCBTTTEETTE-------EC-HHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCceEeCCE-------EC-cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 368999999999998742 23 899999999997 799999994 4444555667777764
No 213
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=96.56 E-value=0.0046 Score=55.04 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=44.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCC---cHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---SMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---~~~ya~~~l~~l~~~ 210 (332)
..|+++|||||||++... .-|+..++|+.+.+ +..+++.|.. +..-+...++.+|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~--------~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVT--------PIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTE--------ECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCE--------eCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 368999999999998642 34789999999998 6999999983 444455567777774
No 214
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=96.55 E-value=0.0007 Score=57.47 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=70.2
Q ss_pred CCcceEEEecCCceEeccCC--CCCC---ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH--hCCCCCCCce
Q 042485 145 EGKKLLVLDIDYTLFDHRST--AENP---LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE--LGVLTNPNYK 216 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~--~~~~---~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~--l~~~~~~~~~ 216 (332)
++.|+||+|+||||++.... ..+. .+..|.+. .|+.|++ ++.++|.|+. ..++.++++ +++.
T Consensus 7 ~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~--~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~------ 76 (168)
T 3ewi_A 7 KEIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAI--GISLLKKSGIEVRLISER--ACSKQTLSALKLDCK------ 76 (168)
T ss_dssp CCCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHH--HHHHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC------
T ss_pred hcCcEEEEeCccceECCcEEEcCCCCEEEEEecCcHH--HHHHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE------
Confidence 46889999999999986431 1111 13344443 6888887 7999999998 788888884 3331
Q ss_pred EEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 217 ITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 217 ~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
++.. ... ...-+..+..++ + .++++|++|-|+..-..+-...|+.+.+
T Consensus 77 ---~~~g---------~~~--K~~~l~~~~~~~-g-i~~~~~~~vGD~~nDi~~~~~ag~~~a~ 124 (168)
T 3ewi_A 77 ---TEVS---------VSD--KLATVDEWRKEM-G-LCWKEVAYLGNEVSDEECLKRVGLSAVP 124 (168)
T ss_dssp ---EECS---------CSC--HHHHHHHHHHHT-T-CCGGGEEEECCSGGGHHHHHHSSEEEEC
T ss_pred ---EEEC---------CCC--hHHHHHHHHHHc-C-cChHHEEEEeCCHhHHHHHHHCCCEEEe
Confidence 1110 011 001133332222 4 4899999999998877776667777655
No 215
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=96.54 E-value=0.0034 Score=55.18 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=46.3
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||+++.. ...|...+.|+.+.+ +..+++.|.-+...+..+++.+++
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~ 59 (231)
T 1wr8_A 3 IKAISIDIDGTITYPNR-------MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGT 59 (231)
T ss_dssp CCEEEEESTTTTBCTTS-------CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCCCCC-------cCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCC
Confidence 37899999999998742 255778888988876 799999999998888888888765
No 216
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=96.47 E-value=0.0049 Score=55.22 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=39.0
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|+++|||||||+++.. ..-|...+.|+.+.+ ...+++.|.-+...+..+++.+++.
T Consensus 5 ~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 62 (279)
T 3mpo_A 5 IKLIAIDIDGTLLNEKN-------ELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDID 62 (279)
T ss_dssp CCEEEECC------------------CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCcCCCCCCCC-------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 58999999999998753 245677888888876 7999999999998899999888764
No 217
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=96.42 E-value=0.004 Score=55.81 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=47.4
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
..|+++|||||||+++.. ..-|...+.|+.+.+ ++.+++.|.-+...+..+++.+++
T Consensus 4 ~~kli~fDlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 61 (279)
T 4dw8_A 4 KYKLIVLDLDGTLTNSKK-------EISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRM 61 (279)
T ss_dssp CCCEEEECCCCCCSCTTS-------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTG
T ss_pred cceEEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHhCC
Confidence 368999999999998753 244778888888876 699999999999889888888876
No 218
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=96.41 E-value=0.0035 Score=50.26 Aligned_cols=50 Identities=28% Similarity=0.291 Sum_probs=37.5
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK 198 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ 198 (332)
|++++||||||+++..... ......|+..+.|+.+.+ .+.++|.|.-...
T Consensus 2 k~i~~DlDGTL~~~~~~~~-~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~ 52 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDY-RNVLPRLDVIEQLREYHQLGFEIVISTARNMR 52 (126)
T ss_dssp CEEEECSTTTTBCCCCSCG-GGCCBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred CEEEEecCCCCCCCCCCcc-ccCCCCHHHHHHHHHHHhCCCeEEEEeCCChh
Confidence 6899999999998643210 012356889999999986 7999999987654
No 219
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=96.36 E-value=0.0014 Score=58.69 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=64.7
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC-
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF- 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~- 249 (332)
...||+.++|+.+++.+.++|.|++...++..+++.+|+... +..+ ++..+.. ..||-+.++...
T Consensus 121 ~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~~~----f~~i------~~~~~~~----~~KP~p~~~~~~~ 186 (260)
T 2gfh_A 121 ILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSY----FDAI------VIGGEQK----EEKPAPSIFYHCC 186 (260)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCGGG----CSEE------EEGGGSS----SCTTCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHcCCcEEEEECcChHHHHHHHHhcCHHhh----hheE------EecCCCC----CCCCCHHHHHHHH
Confidence 467999999999998899999999999999999999887421 1111 1111111 237766665541
Q ss_pred --CCcCCCCcEEEEeCC-ccccccCCCCee
Q 042485 250 --PEFYSSKNTIMFDDL-RRNFVMNPQNGL 276 (332)
Q Consensus 250 --~~~~~~~~~iivDD~-~~~~~~~p~Ngi 276 (332)
-+ .+++++++|+|+ .....+....|+
T Consensus 187 ~~~~-~~~~~~~~vGDs~~~Di~~A~~aG~ 215 (260)
T 2gfh_A 187 DLLG-VQPGDCVMVGDTLETDIQGGLNAGL 215 (260)
T ss_dssp HHHT-CCGGGEEEEESCTTTHHHHHHHTTC
T ss_pred HHcC-CChhhEEEECCCchhhHHHHHHCCC
Confidence 14 489999999995 777776666777
No 220
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=96.34 E-value=0.0039 Score=56.46 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
...|++++||||||+++.. ..-|...+.|+.+.+ +..++|.|.-+...+..+++.+++.
T Consensus 19 ~~~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~ 78 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPDH-------FLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIR 78 (285)
T ss_dssp --CCEEEEECCCCCSCTTS-------CCCHHHHHHHHHHHTTTCEEEEECSSCGGGGHHHHHHHCSC
T ss_pred CcceEEEEeCcCCCCCCCC-------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCCC
Confidence 4678999999999998743 245678888888876 7999999999988888888888763
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.33 E-value=0.044 Score=42.96 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=59.0
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC---cccccccCCCCCCceEEEE
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD---DTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~---d~~~L~~~~i~~g~~l~l~ 87 (332)
.....+|.|+. .|....-..+.++||.+|.+-|....+.+...-.|+- -+..|.+. .+.+|.++||.+...|++.
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t-~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT-MFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC-SSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc-CCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 34468899995 6777888999999999999999999888877777763 11334453 3679999999998877765
Q ss_pred e
Q 042485 88 G 88 (332)
Q Consensus 88 g 88 (332)
-
T Consensus 89 ~ 89 (109)
T 2dzk_A 89 P 89 (109)
T ss_dssp C
T ss_pred E
Confidence 3
No 222
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.27 E-value=0.00068 Score=65.19 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
...|+|+|+..|....+.|..++++..|+...++..|+++.+++++| .|+.+.++.|-.++++.+|+.|.++-..
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCCCCCHHHcCCCCCCEeeeeecc
Confidence 34688888876777778999999999999999999999999999998 8999999999999999999999877543
No 223
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}
Probab=96.27 E-value=0.012 Score=53.19 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=43.9
Q ss_pred CcCCcceEEEecCCceEeccCCCCCCceecCCcHHHHH---HHHH--hCCcEEEEcCCcHHHHHHHHHHhCCCCCCC
Q 042485 143 SREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFL---TAAY--AEYDIMIWSATSMKWVELKMEELGVLTNPN 214 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL---~~l~--~~yeivI~Tas~~~ya~~~l~~l~~~~~~~ 214 (332)
+....++++|||||||+++. ..-..++.+.+|. +.+. ..+.+++.|..+..-+..++..+|+...|.
T Consensus 18 ~~~~~kliifDlDGTLlds~-----i~~~~~~~l~~~~~~l~~~~~~~g~~~~~~tGr~~~~~~~~~~~~g~~~~~~ 89 (289)
T 3gyg_A 18 VEHPQYIVFCDFDETYFPHT-----IDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRYFPH 89 (289)
T ss_dssp CSSCSEEEEEETBTTTBCSS-----CCHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCBCCS
T ss_pred CCCCCeEEEEECCCCCcCCC-----CCcchHHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHHHHhhccCCCCC
Confidence 34457899999999999974 1112233344333 2232 357888888888888888888887754444
No 224
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=96.26 E-value=0.004 Score=54.90 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=48.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|++++||||||++... ...|...+.|+.+.+ ++.++|.|.-+...+..+++.+++.
T Consensus 5 ~kli~~DlDGTLl~~~~-------~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~ 62 (227)
T 1l6r_A 5 IRLAAIDVDGNLTDRDR-------LISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGIN 62 (227)
T ss_dssp CCEEEEEHHHHSBCTTS-------CBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCC
T ss_pred eEEEEEECCCCCcCCCC-------cCCHHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHHhCCC
Confidence 47999999999997632 367889999999987 6999999999999999999888763
No 225
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=96.19 E-value=0.0057 Score=55.11 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=45.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
..|+++|||||||+++.. ..-|...+.|+.+.+ +..+++.|.-+...+..+++.+++.
T Consensus 5 ~~kli~fDlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 63 (290)
T 3dnp_A 5 SKQLLALNIDGALLRSNG-------KIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLD 63 (290)
T ss_dssp -CCEEEECCCCCCSCTTS-------CCCHHHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCC
T ss_pred cceEEEEcCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 468999999999998753 244667777877766 6889998888888888888877653
No 226
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=96.19 E-value=0.0069 Score=54.77 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=46.9
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
..+++++||||||+++.. ..-|...+.|+.+.+ +..++|.|.-+...+..+++.+++.
T Consensus 8 ~~~li~~DlDGTLl~~~~-------~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 8 QPLLVFSDLDGTLLDSHS-------YDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp CCEEEEEECTTTTSCSSC-------CSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred CceEEEEeCCCCCCCCCC-------cCCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 468999999999997632 122556888999876 6999999999999999999888763
No 227
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=96.18 E-value=0.0054 Score=55.63 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=45.2
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||+++.. ...|...+.|+.+.+ +..+++.|.-+...+..+++.+++
T Consensus 4 ikli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 60 (288)
T 1nrw_A 4 MKLIAIDLDGTLLNSKH-------QVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 60 (288)
T ss_dssp CCEEEEECCCCCSCTTS-------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTC
T ss_pred eEEEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 47999999999998743 134667788888876 799999999998888888877765
No 228
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=96.17 E-value=0.0052 Score=54.56 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=44.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||+++.. ...|...+.|+.+.+ ++.+++.|.-+...+...++.+++
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~ 59 (258)
T 2pq0_A 3 RKIVFFDIDGTLLDEQK-------QLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGI 59 (258)
T ss_dssp CCEEEECTBTTTBCTTS-------CCCHHHHHHHHHHHHTTCEEEEECSSCGGGSHHHHHHHTC
T ss_pred ceEEEEeCCCCCcCCCC-------ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHhcCC
Confidence 47999999999998752 245677788888876 689999998888777788887765
No 229
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=96.15 E-value=0.014 Score=53.08 Aligned_cols=106 Identities=8% Similarity=0.049 Sum_probs=76.2
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDH 223 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~ 223 (332)
.+.+++.+|.|+++..... .....+||+.++|+.|.+ .+.++|.|++...+++.+++.+|+. .+|+.
T Consensus 141 ~g~~~i~~~~d~~~~~~~~----~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~--------~~f~~ 208 (287)
T 3a1c_A 141 EAKTAVIVARNGRVEGIIA----VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD--------LVIAE 208 (287)
T ss_dssp TTCEEEEEEETTEEEEEEE----EECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS--------EEECS
T ss_pred CCCeEEEEEECCEEEEEEE----eccccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCc--------eeeee
Confidence 3667899999999875421 124689999999999997 6999999999999999999998873 23322
Q ss_pred CceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 224 LAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 224 ~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
++ + .+ ..+-+..+ + .. ++|++|.|+..-..+....|+.|
T Consensus 209 --i~----~-~~--K~~~~~~l-----~-~~-~~~~~vGDs~~Di~~a~~ag~~v 247 (287)
T 3a1c_A 209 --VL----P-HQ--KSEEVKKL-----Q-AK-EVVAFVGDGINDAPALAQADLGI 247 (287)
T ss_dssp --CC----T-TC--HHHHHHHH-----T-TT-CCEEEEECTTTCHHHHHHSSEEE
T ss_pred --cC----h-HH--HHHHHHHH-----h-cC-CeEEEEECCHHHHHHHHHCCeeE
Confidence 11 1 11 11223333 3 25 89999999987777666667754
No 230
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=96.08 E-value=0.0054 Score=55.50 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=46.5
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
....|++++||||||+++... ..-|...+.|+.+.+ +..+++.|.-+...+..+++.++.
T Consensus 18 ~~~~kli~~DlDGTLl~~~~~------~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~ 78 (283)
T 3dao_A 18 QGMIKLIATDIDGTLVKDGSL------LIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKH 78 (283)
T ss_dssp -CCCCEEEECCBTTTBSTTCS------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHTGGGGG
T ss_pred ccCceEEEEeCcCCCCCCCCC------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 457889999999999977431 245778888888876 789999998888888877776654
No 231
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=96.07 E-value=0.013 Score=52.10 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=43.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCC---cHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---SMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---~~~ya~~~l~~l~~~ 210 (332)
..++++|||||||+++. . .-|+..++++.+.+ ++.+++.|+. +...+...++.+|+.
T Consensus 16 ~~~~v~~DlDGTLl~~~------~--~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~ 76 (271)
T 1vjr_A 16 KIELFILDMDGTFYLDD------S--LLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD 76 (271)
T ss_dssp GCCEEEECCBTTTEETT------E--ECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC
T ss_pred CCCEEEEcCcCcEEeCC------E--ECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 46789999999999872 1 33888999999987 7999999944 344455566777764
No 232
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=96.07 E-value=0.0059 Score=54.34 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=43.4
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcC---CcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSA---TSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Ta---s~~~ya~~~l~~l~~~ 210 (332)
..|+++|||||||+++.. .-|+..++|+.+.+ +..+++.|. -+..-+...++.+|+.
T Consensus 5 ~~kli~~DlDGTLl~~~~--------~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTE--------KIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCHHH--------HHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeCCE--------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 368999999999997632 23788999999998 799999988 3344455567777774
No 233
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=96.03 E-value=0.01 Score=53.77 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=46.8
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|++++||||||+++.. ..-|...+.|+.+.+ +..++|.|.-+...+..+++.+++.
T Consensus 5 ~kli~~DlDGTLl~~~~-------~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~ 62 (282)
T 1rkq_A 5 IKLIAIDMDGTLLLPDH-------TISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME 62 (282)
T ss_dssp CCEEEECCCCCCSCTTS-------CCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCC
T ss_pred ceEEEEeCCCCCCCCCC-------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 57999999999998642 245677888888887 6999999999888888888888764
No 234
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.056 Score=40.23 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=65.2
Q ss_pred CCCCCCceEEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 8 STASSSEELTLTVKWS-GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 8 ~~~~~~~~i~i~vk~~-g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
++.+++.++.+.|.+. .+++.+.|++..++.+|--.|.++..+.|++--|+.--..+..|+=+.+|.+|||++ +..
T Consensus 3 ~~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya 79 (91)
T 2daj_A 3 SGSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYA 79 (91)
T ss_dssp CCSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEE
T ss_pred CCCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhe
Confidence 4556778999999975 577888999999999999999999999999998885221455677778999999986 666
Q ss_pred EecCC
Q 042485 87 IGTVE 91 (332)
Q Consensus 87 ~gs~~ 91 (332)
+-+..
T Consensus 80 ~d~~~ 84 (91)
T 2daj_A 80 MDVNR 84 (91)
T ss_dssp EECCC
T ss_pred ecccc
Confidence 65443
No 235
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=95.92 E-value=0.014 Score=55.33 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=46.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCc----HHHHHHHHHHhCCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS----MKWVELKMEELGVLT 211 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~----~~ya~~~l~~l~~~~ 211 (332)
.+++++|||||||++... .=||..++|+.|.+ .+.+++.|+++ ..+++.+-+.+|+..
T Consensus 12 ~~~~~l~D~DGvl~~g~~--------~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~ 74 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKK--------PIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDV 74 (352)
T ss_dssp CCEEEEECCBTTTEETTE--------ECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCC
T ss_pred cCCEEEEECCCeeEcCCe--------eCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCC
Confidence 578999999999998642 33999999999997 79999999875 566665544688743
No 236
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=95.91 E-value=0.0025 Score=57.35 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=67.9
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC---CCCCCCceEEEEecCCceEEEeeCCCCCccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG---VLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLI 245 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~---~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i 245 (332)
....||+.++|+.|++ ++.++|.|+++..++..+++.++ +.. .+..+++ . +.. .||-+.+
T Consensus 129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~~----~fd~i~~------~-~~~-----~KP~p~~ 192 (261)
T 1yns_A 129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILE----LVDGHFD------T-KIG-----HKVESES 192 (261)
T ss_dssp BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCGG----GCSEEEC------G-GGC-----CTTCHHH
T ss_pred cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChHh----hccEEEe------c-CCC-----CCCCHHH
Confidence 5678999999999976 79999999999999998888543 321 1112211 1 111 3887776
Q ss_pred cccC---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 246 WDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 246 ~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
|... -+ .++++||+|+|++.........|+...-+
T Consensus 193 ~~~~~~~lg-~~p~~~l~VgDs~~di~aA~~aG~~~i~v 230 (261)
T 1yns_A 193 YRKIADSIG-CSTNNILFLTDVTREASAAEEADVHVAVV 230 (261)
T ss_dssp HHHHHHHHT-SCGGGEEEEESCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhC-cCcccEEEEcCCHHHHHHHHHCCCEEEEE
Confidence 6541 14 48999999999988888877888775544
No 237
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=95.88 E-value=0.0049 Score=54.83 Aligned_cols=56 Identities=29% Similarity=0.289 Sum_probs=42.3
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|+++|||||||+++.. ..-|...+.|+.+.+ +..+++.|.-+..-+...++.+++
T Consensus 5 ~kli~fDlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~ 61 (274)
T 3fzq_A 5 YKLLILDIDGTLRDEVY-------GIPESAKHAIRLCQKNHCSVVICTGRSMGTIQDDVLSLGV 61 (274)
T ss_dssp CCEEEECSBTTTBBTTT-------BCCHHHHHHHHHHHHTTCEEEEECSSCTTTSCHHHHTTCC
T ss_pred ceEEEEECCCCCCCCCC-------cCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHcCC
Confidence 57999999999998864 245667777777765 688888888777767666666654
No 238
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=95.83 E-value=0.014 Score=52.63 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=43.8
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcC---CcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSA---TSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Ta---s~~~ya~~~l~~l~~~ 210 (332)
..++++|||||||++... .-|+..++|+.+.+ ++.+++.|+ -+...+...++.+|+.
T Consensus 13 ~~k~i~~D~DGtL~~~~~--------~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~ 73 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNG--------LLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF 73 (284)
T ss_dssp GCSEEEECSBTTTEETTE--------ECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred cCCEEEEcCcCCcCcCCe--------eChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence 357999999999998531 23899999999987 799999996 3444555667777764
No 239
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.013 Score=52.30 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=39.9
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHH---HHHhCC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELK---MEELGV 209 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~---l~~l~~ 209 (332)
|+++|||||||++.. ... |+..++|+.+.+ ...+++.|..+..-...+ +..+|+
T Consensus 2 k~i~~D~DGtL~~~~-------~~~-~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~ 59 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGN-------RAI-PGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGI 59 (263)
T ss_dssp EEEEEECBTTTEETT-------EEC-TTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTC
T ss_pred eEEEEeCcCceEeCC-------EeC-ccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 689999999999752 223 899999999987 799999998765433333 334555
No 240
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=95.67 E-value=0.011 Score=52.50 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=42.8
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||+ ... .+ +-..+.|+.+.+ +..++|.|.-+...+..+++.+++
T Consensus 2 ikli~~DlDGTLl-~~~-----~~---~~~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~ 56 (249)
T 2zos_A 2 IRLIFLDIDKTLI-PGY-----EP---DPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEV 56 (249)
T ss_dssp EEEEEECCSTTTC-TTS-----CS---GGGHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTC
T ss_pred ccEEEEeCCCCcc-CCC-----Cc---HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 3789999999999 421 11 337788888876 789999999998888888888876
No 241
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=95.66 E-value=0.016 Score=51.93 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=45.1
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|++++||||||+++.. ..-|...+.|+. .+ +..++|.|.-+...+..+++.+++.
T Consensus 2 ikli~~DlDGTLl~~~~-------~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~~~~~~~~l~~~ 58 (268)
T 1nf2_A 2 YRVFVFDLDGTLLNDNL-------EISEKDRRNIEK-LSRKCYVVFASGRMLVSTLNVEKKYFKR 58 (268)
T ss_dssp BCEEEEECCCCCSCTTS-------CCCHHHHHHHHH-HTTTSEEEEECSSCHHHHHHHHHHHSSS
T ss_pred ccEEEEeCCCcCCCCCC-------ccCHHHHHHHHH-HhCCCEEEEECCCChHHHHHHHHHhCCC
Confidence 37899999999998642 134667788888 65 7999999999999999999888763
No 242
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=95.65 E-value=0.023 Score=49.81 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=39.5
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEc---CCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWS---ATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~T---as~~~ya~~~l~~l~~ 209 (332)
.|+++|||||||+++.+. . -..-|+..+.++.+.+ ++.+++.| .-+..-+...+.++|+
T Consensus 12 ~k~i~fDlDGTLl~s~~~--~--~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~~~~~l~~~g~ 74 (271)
T 2x4d_A 12 VRGVLLDISGVLYDSGAG--G--GTAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQLQRLGF 74 (271)
T ss_dssp CCEEEECCBTTTEECCTT--T--CEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCeEEecCCC--C--CccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHCCC
Confidence 579999999999997511 1 1234677777888877 68888888 4444444445555544
No 243
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=95.62 E-value=0.032 Score=48.78 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=38.8
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCC---cHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---SMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---~~~ya~~~l~~l~~~ 210 (332)
..++++|||||||+++.. .. |+..+.++.+.+ ++.+++.|.. +...+...+..+|+.
T Consensus 6 ~ik~i~fDlDGTLld~~~------~~--~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~ 66 (259)
T 2ho4_A 6 ALKAVLVDLNGTLHIEDA------AV--PGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFE 66 (259)
T ss_dssp CCCEEEEESSSSSCC---------CC--TTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCC
T ss_pred hCCEEEEeCcCcEEeCCE------eC--cCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCC
Confidence 468999999999998642 11 677888999988 5888888843 333344455555553
No 244
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=95.61 E-value=0.021 Score=52.18 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=42.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcC---CcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSA---TSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Ta---s~~~ya~~~l~~l~~~ 210 (332)
.++++|||||||++.. ..-|+..++|+.+.+ ++.+++.|. -+.......++.+|+.
T Consensus 21 ~k~i~~D~DGTL~~~~--------~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGE--------RAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETT--------EECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCC--------ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999753 234789999999987 799999995 3344555566777664
No 245
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=95.56 E-value=0.0021 Score=61.74 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=69.9
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCC-----C--Cccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSR-----G--IFDCKP 241 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~-----g--~~~~Kd 241 (332)
+...||+.++|+.|++ +|.++|.|++...++..+++.+|+... |+....++..+... . ....||
T Consensus 214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~~~--------Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP 285 (384)
T 1qyi_A 214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPY--------FEADFIATASDVLEAENMYPQARPLGKP 285 (384)
T ss_dssp SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCGGG--------SCGGGEECHHHHHHHHHHSTTSCCCCTT
T ss_pred CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCChHh--------cCCCEEEecccccccccccccccCCCCC
Confidence 4578999999999998 599999999999999999999887421 11001111111000 0 001377
Q ss_pred ccccccc----CC-------------CcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 242 LGLIWDQ----FP-------------EFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 242 L~~i~~~----~~-------------~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
-+.+|.. +. + .++++|++|+|++.........|+.+..+.
T Consensus 286 ~P~~~~~a~~~lg~~~~~~~~~~~~~~-v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~ 342 (384)
T 1qyi_A 286 NPFSYIAALYGNNRDKYESYINKQDNI-VNKDDVFIVGDSLADLLSAQKIGATFIGTL 342 (384)
T ss_dssp STHHHHHHHHCCCGGGHHHHHHCCTTC-SCTTTEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred CHHHHHHHHHHcCCccccccccccccC-CCCcCeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 6666543 21 1 378999999999988888778887765443
No 246
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.54 E-value=0.012 Score=53.60 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=73.6
Q ss_pred cceEEEecCCceEeccCCCC-----CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHH---HHHHHH--------hCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAE-----NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWV---ELKMEE--------LGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~-----~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya---~~~l~~--------l~~ 209 (332)
...+++|+|||+........ -......||+.++|+.|++ ++.++|.|+....++ ...|+. +|+
T Consensus 159 ~~~i~iD~dgtl~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~ 238 (301)
T 1ltq_A 159 PKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGV 238 (301)
T ss_dssp CEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCC
T ss_pred cceEEEeCCCCcccccCCCchhhhhccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCC
Confidence 46888999999876533210 0123468999999999997 699999999987664 455666 555
Q ss_pred CCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc----CCCcCCC-CcEEEEeCCccccccCCCCeeeeccc
Q 042485 210 LTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FPEFYSS-KNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 210 ~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~~~~~~-~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+ + .+++ ... .+ ..|+-+.++.. + + -++ +.+++|+|++....+...+|+++...
T Consensus 239 ---~-~--~~~~------~~~---~~--~~kp~p~~~~~~~~~~-~-~~~~~~~~~vgD~~~di~~a~~aG~~~~~v 296 (301)
T 1ltq_A 239 ---P-L--VMQC------QRE---QG--DTRKDDVVKEEIFWKH-I-APHFDVKLAIDDRTQVVEMWRRIGVECWQV 296 (301)
T ss_dssp ---C-C--SEEE------ECC---TT--CCSCHHHHHHHHHHHH-T-TTTCEEEEEEECCHHHHHHHHHTTCCEEEC
T ss_pred ---C-c--hhee------ecc---CC--CCcHHHHHHHHHHHHH-h-ccccceEEEeCCcHHHHHHHHHcCCeEEEe
Confidence 1 1 1221 101 11 11444443322 1 2 133 34789999999998888889876554
No 247
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=95.53 E-value=0.022 Score=52.22 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=46.8
Q ss_pred cceEEEecCCceEec-cCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHH--HHhC-CC
Q 042485 147 KKLLVLDIDYTLFDH-RSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKM--EELG-VL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~-~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l--~~l~-~~ 210 (332)
.|++++||||||++. .. ..-|...+.|+.+.+ +..++|.|.-+...+..++ +.++ +.
T Consensus 27 ikli~~DlDGTLl~~~~~-------~is~~~~~al~~l~~~Gi~v~iaTGR~~~~~~~~~~~~~l~~~~ 88 (301)
T 2b30_A 27 IKLLLIDFDGTLFVDKDI-------KVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMN 88 (301)
T ss_dssp CCEEEEETBTTTBCCTTT-------CSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHHHHHHT
T ss_pred ccEEEEECCCCCcCCCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHhhHHhhcccc
Confidence 589999999999986 32 144677888888886 7999999999999898888 8887 63
No 248
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=95.48 E-value=0.0057 Score=53.51 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=67.4
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
....||+.++|+.|++ .+.++|.|++...+++.+++.+++. . + ..++ +...... -||-+.++..
T Consensus 109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~--f--~~~~------~~~~~~~----~Kp~p~~~~~ 173 (240)
T 2hi0_A 109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPG-S--F--DFAL------GEKSGIR----RKPAPDMTSE 173 (240)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTT-T--C--SEEE------EECTTSC----CTTSSHHHHH
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc-c--e--eEEE------ecCCCCC----CCCCHHHHHH
Confidence 3467999999999987 6999999999999999999988762 1 1 1221 1111122 2665555443
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .++++|++|.|++....+....|+....+
T Consensus 174 ~~~~l~-~~~~~~~~vGDs~~Di~~a~~aG~~~v~v 208 (240)
T 2hi0_A 174 CVKVLG-VPRDKCVYIGDSEIDIQTARNSEMDEIAV 208 (240)
T ss_dssp HHHHHT-CCGGGEEEEESSHHHHHHHHHTTCEEEEE
T ss_pred HHHHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 114 48999999999998888877788864443
No 249
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=95.34 E-value=0.035 Score=47.61 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=29.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSA 194 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Ta 194 (332)
.|+++|||||||+++.. ...+- .++++.+.+ +..+++.|.
T Consensus 3 ~k~i~fDlDGTLl~~~~-------~~~~~-~~~~~~l~~~g~~~~~~t~ 43 (250)
T 2c4n_A 3 IKNVICDIDGVLMHDNV-------AVPGA-AEFLHGIMDKGLPLVLLTN 43 (250)
T ss_dssp CCEEEEECBTTTEETTE-------ECTTH-HHHHHHHHHTTCCEEEEES
T ss_pred ccEEEEcCcceEEeCCE-------eCcCH-HHHHHHHHHcCCcEEEEEC
Confidence 47999999999998742 12233 778888876 678888773
No 250
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=95.17 E-value=0.0059 Score=54.43 Aligned_cols=54 Identities=31% Similarity=0.285 Sum_probs=41.7
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
|++++||||||+++... ..-|...+.|+.+.+ ++.+++.|.-+ ..+..+++.++
T Consensus 3 kli~~DlDGTLl~~~~~------~i~~~~~~al~~l~~~G~~~~iaTGR~-~~~~~~~~~l~ 57 (261)
T 2rbk_A 3 KALFFDIDGTLVSFETH------RIPSSTIEALEAAHAKGLKIFIATGRP-KAIINNLSELQ 57 (261)
T ss_dssp CEEEECSBTTTBCTTTS------SCCHHHHHHHHHHHHTTCEEEEECSSC-GGGCCSCHHHH
T ss_pred cEEEEeCCCCCcCCCCC------cCCHHHHHHHHHHHHCCCEEEEECCCh-HHHHHHHHHhC
Confidence 78999999999987531 145677888888876 69999999887 77666666665
No 251
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=95.16 E-value=0.023 Score=50.64 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=39.4
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVEL 202 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~ 202 (332)
..|++++||||||+++.. ..-|...+.|+.+.+ +..++|.|.-+...+..
T Consensus 3 ~~kli~~DlDGTLl~~~~-------~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~~~~ 53 (246)
T 3f9r_A 3 KRVLLLFDVDGTLTPPRL-------CQTDEMRALIKRARGAGFCVGTVGGSDFAKQVE 53 (246)
T ss_dssp CSEEEEECSBTTTBSTTS-------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred CceEEEEeCcCCcCCCCC-------ccCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
Confidence 368999999999998743 244778899999987 68999999888765433
No 252
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=94.92 E-value=0.04 Score=48.72 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=36.3
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVE 201 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~ 201 (332)
..++++|||||||+++.. .. |+..++|+.+.+ ++.+++.|.....-..
T Consensus 4 ~~k~v~fDlDGTL~~~~~-------~~-~~~~~~l~~l~~~g~~~~~~t~~~~~~~~ 52 (264)
T 1yv9_A 4 DYQGYLIDLDGTIYLGKE-------PI-PAGKRFVERLQEKDLPFLFVTNNTTKSPE 52 (264)
T ss_dssp SCCEEEECCBTTTEETTE-------EC-HHHHHHHHHHHHTTCCEEEEECCCSSCHH
T ss_pred cCCEEEEeCCCeEEeCCE-------EC-cCHHHHHHHHHHCCCeEEEEeCCCCCCHH
Confidence 357999999999998642 22 788899998876 6899888876544333
No 253
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=94.92 E-value=0.013 Score=53.58 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=41.0
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCc-HHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPY-LHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~-l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
.|+++|||||||+++.. ..-|. ..+.|+.+.+ ...+++.|.-....+..++..++
T Consensus 37 iKli~fDlDGTLld~~~-------~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 93 (304)
T 3l7y_A 37 VKVIATDMDGTFLNSKG-------SYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCH 93 (304)
T ss_dssp CSEEEECCCCCCSCTTS-------CCCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHTTCTTTG
T ss_pred eEEEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 68999999999998753 13344 6677777776 68999988888777766655443
No 254
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=94.92 E-value=0.011 Score=52.32 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=42.5
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.++++||||||+++.. . . +...+.|+.+.+...++|.|.-+...+..+++.+++.
T Consensus 4 ~li~~DlDGTLl~~~~------~-~-~~~~~~l~~~~~gi~v~iaTGR~~~~~~~~~~~l~l~ 58 (244)
T 1s2o_A 4 LLLISDLDNTWVGDQQ------A-L-EHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLM 58 (244)
T ss_dssp EEEEECTBTTTBSCHH------H-H-HHHHHHHHTTGGGEEEEEECSSCHHHHHHHHHHHTCC
T ss_pred eEEEEeCCCCCcCCHH------H-H-HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 3899999999997531 1 1 4566667776667889999999988999998887763
No 255
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A
Probab=94.75 E-value=0.041 Score=48.51 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
..+|++++||||||+++.. ..-|...+.|+.+.+...++|.|.-+... +.+.++
T Consensus 4 ~~~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~i~v~iaTGR~~~~---~~~~l~ 57 (246)
T 2amy_A 4 PGPALCLFDVDGTLTAPRQ-------KITKEMDDFLQKLRQKIKIGVVGGSDFEK---VQEQLG 57 (246)
T ss_dssp CCSEEEEEESBTTTBCTTS-------CCCHHHHHHHHHHTTTSEEEEECSSCHHH---HHHHHC
T ss_pred CCceEEEEECCCCcCCCCc-------ccCHHHHHHHHHHHhCCeEEEEcCCCHHH---HHHHhc
Confidence 3678999999999997642 14567888899888766666666655432 445554
No 256
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Probab=94.68 E-value=0.038 Score=49.41 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=36.5
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVEL 202 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~ 202 (332)
..+++++||||||+++.. ..-|...+.|+.+.+...++|.|.-+...+..
T Consensus 12 ~~kli~~DlDGTLl~~~~-------~is~~~~~al~~l~~~i~v~iaTGR~~~~~~~ 61 (262)
T 2fue_A 12 ERVLCLFDVDGTLTPARQ-------KIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAE 61 (262)
T ss_dssp -CEEEEEESBTTTBSTTS-------CCCHHHHHHHHHHTTTSEEEEECSSCHHHHHH
T ss_pred CeEEEEEeCccCCCCCCC-------cCCHHHHHHHHHHHhCCEEEEEcCCCHHHHHH
Confidence 568999999999997642 14577889999998777777777665544433
No 257
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=94.67 E-value=0.018 Score=51.57 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=41.0
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCc-HHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPY-LHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~-l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
.|++++||||||+++.. ..-|. +.+.|+.+.+ +..++|.|.-+...+..+++.++
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 59 (271)
T 1rlm_A 3 VKVIVTDMDGTFLNDAK-------TYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELK 59 (271)
T ss_dssp CCEEEECCCCCCSCTTS-------CCCHHHHHHHHHHHHHHTCEEEEECSSCHHHHGGGCTTTT
T ss_pred ccEEEEeCCCCCCCCCC-------cCCHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHhcC
Confidence 47999999999998642 13344 4778888876 79999999998777766555443
No 258
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=94.64 E-value=0.021 Score=50.64 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=33.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM 197 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~ 197 (332)
-.|+++|||||||+++.. -...|...+.|+.+.+ ++.+++.|.-+.
T Consensus 11 miKli~~DlDGTLl~~~~------~~i~~~~~~al~~l~~~G~~~~iaTGR~~ 57 (268)
T 3r4c_A 11 MIKVLLLDVDGTLLSFET------HKVSQSSIDALKKVHDSGIKIVIATGRAA 57 (268)
T ss_dssp CCCEEEECSBTTTBCTTT------CSCCHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred ceEEEEEeCCCCCcCCCC------CcCCHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 368999999999998422 1245667778888776 677787776543
No 259
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=94.58 E-value=0.014 Score=49.83 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=64.8
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCc---HHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATS---MKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~---~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
..|++.++|+.+.+ ++.++|.|++. ..+++.+++.+++.. . +..+ +...... ..|+-+.++.
T Consensus 100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~--~--f~~~------~~~~~~~----~~kp~~~~~~ 165 (235)
T 2om6_A 100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLME--F--IDKT------FFADEVL----SYKPRKEMFE 165 (235)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGG--G--CSEE------EEHHHHT----CCTTCHHHHH
T ss_pred cCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHH--H--hhhh------eeccccC----CCCCCHHHHH
Confidence 48999999999998 59999999999 899999998887631 1 1111 1111111 2255444443
Q ss_pred c---CCCcCCCCcEEEEeCCc-cccccCCCCeeeecccc
Q 042485 248 Q---FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 248 ~---~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f~ 282 (332)
. .-+ .++++|++|+|++ .-..+....|+.+.-+.
T Consensus 166 ~~~~~lg-i~~~~~~~iGD~~~nDi~~a~~aG~~~~~~~ 203 (235)
T 2om6_A 166 KVLNSFE-VKPEESLHIGDTYAEDYQGARKVGMWAVWIN 203 (235)
T ss_dssp HHHHHTT-CCGGGEEEEESCTTTTHHHHHHTTSEEEEEC
T ss_pred HHHHHcC-CCccceEEECCChHHHHHHHHHCCCEEEEEC
Confidence 2 124 4899999999999 56777666777765554
No 260
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.47 E-value=0.25 Score=39.57 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=57.4
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc---CcccccccCCCCCCceEEEE
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA---DDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l---~d~~~L~~~~i~~g~~l~l~ 87 (332)
....+|.|+. .|..+.-.+..++||.+|.+.|... +.++..-.|+- -+..+.+ +.+.+|.++||.+...|+|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t-~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLT-NFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC-SSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEec-CCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3468899996 6777788899999999999999987 88878888873 1134555 34689999999998887765
No 261
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=94.42 E-value=0.026 Score=49.88 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=40.3
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHH
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKME 205 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~ 205 (332)
+++++||||||++....+. .-..-|...+.|+.+.+ . .++|.|.-+...+...++
T Consensus 2 kli~~DlDGTLl~~~~~~~--~~~i~~~~~~al~~l~~~g-~v~iaTGR~~~~~~~~~~ 57 (239)
T 1u02_A 2 SLIFLDYDGTLVPIIMNPE--ESYADAGLLSLISDLKERF-DTYIVTGRSPEEISRFLP 57 (239)
T ss_dssp CEEEEECBTTTBCCCSCGG--GCCCCHHHHHHHHHHHHHS-EEEEECSSCHHHHHHHSC
T ss_pred eEEEEecCCCCcCCCCCcc--cCCCCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHhc
Confidence 6899999999997532110 12356788999999987 7 888888888777766543
No 262
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=94.26 E-value=0.28 Score=44.45 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=38.3
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+.+|||..+|++.|++ ++.++|.|.+....++.+++++|+.
T Consensus 140 i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~ 181 (297)
T 4fe3_A 140 VMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVY 181 (297)
T ss_dssp CCBCBTHHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred CCCCCcHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 5689999999999998 6999999999999999999999875
No 263
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=93.90 E-value=0.23 Score=36.97 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=49.1
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccC--CCcccCcccccccCCCCCCceEEEEe
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKI--GNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~--~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..|+|.+-+.+..+.|-|+++-+..+|+.+|.....+ +.+.++..|- .|..+.++..|.. -|..+.+|+|-+
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~~ 84 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVHD 84 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEec
Confidence 5577777789999999999999999999999999999 4555553221 1222322233322 246667777654
No 264
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.51 E-value=0.21 Score=37.17 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=40.5
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.+.++|+|.+. -++.|.++.+.+..+|.++|.++.++|++.-+|-|
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 34577777776 67889999999999999999999999999999987
No 265
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Probab=93.33 E-value=0.08 Score=46.88 Aligned_cols=49 Identities=31% Similarity=0.267 Sum_probs=37.3
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++++||||||+++. ..-|...+-|+.+.+ ...+++.|.-....+. .+++
T Consensus 2 li~~DlDGTLl~~~--------~i~~~~~~al~~l~~~Gi~v~iaTGR~~~~~~----~l~~ 51 (259)
T 3zx4_A 2 IVFTDLDGTLLDER--------GELGPAREALERLRALGVPVVPVTAKTRKEVE----ALGL 51 (259)
T ss_dssp EEEECCCCCCSCSS--------SSCSTTHHHHHHHHHTTCCEEEBCSSCHHHHH----HTTC
T ss_pred EEEEeCCCCCcCCC--------cCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH----HcCC
Confidence 68999999999773 345778888888876 6888888777765554 5555
No 266
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.00 E-value=1.2 Score=31.60 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=43.0
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
|+|+|.-......++++...||.+|.+.+ +++++.--+.. +|.....+. -|++|+.|-++
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vav---N~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKK---NGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEE---TTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECCCcc-----cCCCCCEEEEE
Confidence 56777766666678888889999999886 56665543332 677765443 57899999876
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=91.65 E-value=0.81 Score=34.43 Aligned_cols=49 Identities=6% Similarity=-0.000 Sum_probs=40.7
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK 61 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k 61 (332)
..+|+|++.++|....+.++++.+..+|.++|.+..++++..+=.+.|+
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 3468888889999999999999999999999999999987655545444
No 268
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=91.23 E-value=0.62 Score=33.68 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=42.2
Q ss_pred EEEEEEeCCe-EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKWSGK-EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~~g~-~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|+|+|+..|. ...+++++.+||.||-++ .|+|++.--++ . +|...+.+. +.+|++|.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~--v-NG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVL--V-DGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEE--C-CCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEE--E-CCEECCHHH------CCCCCEEEEEE
Confidence 4566774454 455899999999997655 89999988444 3 788775444 23489988774
No 269
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.70 E-value=1.9 Score=33.34 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=54.5
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC--cccccccCCCCCCceEEEE
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD--DTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~--d~~~L~~~~i~~g~~l~l~ 87 (332)
...+|.|+. .|+.+.-....++||.+|.+-|... +..+..-+|+- -+..+.+. .+.+|.++||.+...|+|-
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t-~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLST-SFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEEC-SSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEe-CCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 468899995 6777777899999999999999965 55666777763 11234443 4689999999998877664
No 270
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.57 E-value=1 Score=39.38 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=51.3
Q ss_pred EEEEEEeCCeE---EEEEecCCCCHHHHHHHHHHHhCCCCC-CceEeeccCC--CcccCc-ccccccCCCCCCceEEE
Q 042485 16 LTLTVKWSGKE---YTVRVCGDDSVAELKRRICELTNVLPK-RQKLLYPKIG--NKLADD-TVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 16 i~i~vk~~g~~---~~i~v~~~~tV~~LK~~I~~~tgvp~~-~QkLl~~k~~--gk~l~d-~~~L~~~~i~~g~~l~l 86 (332)
+.+++...... +++.++..+||.+|++.+...++|+++ .-+|-..... ..+++| +.+|.+++|.+|+.|.|
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill 205 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI 205 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE
Confidence 44555544433 557789999999999999999999998 4666421101 224554 57999999999998875
No 271
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.44 E-value=1.7 Score=38.28 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=51.8
Q ss_pred EEEEEEeCCeE---EEEEecCCCCHHHHHHHHHHHhCCCCC-CceEeeccC--CCcccCc-ccccccCCCCCCceEEEE
Q 042485 16 LTLTVKWSGKE---YTVRVCGDDSVAELKRRICELTNVLPK-RQKLLYPKI--GNKLADD-TVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~~g~~---~~i~v~~~~tV~~LK~~I~~~tgvp~~-~QkLl~~k~--~gk~l~d-~~~L~~~~i~~g~~l~l~ 87 (332)
+.+++...+.. +++.++..+||.+|++.+....+|+++ .-+|-...- ....+.| +.+|.+++|..|+.|.|=
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 45555544432 446679999999999999999999998 477753210 1224544 589999999999987753
No 272
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=89.10 E-value=0.12 Score=44.73 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.7
Q ss_pred cceEEEecCCceEeccC
Q 042485 147 KKLLVLDIDYTLFDHRS 163 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~ 163 (332)
.++++|||||||+++..
T Consensus 4 ~k~viFDlDGTL~ds~~ 20 (240)
T 2hi0_A 4 YKAAIFDMDGTILDTSA 20 (240)
T ss_dssp CSEEEECSBTTTEECHH
T ss_pred ccEEEEecCCCCccCHH
Confidence 47899999999999854
No 273
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=87.52 E-value=1.9 Score=40.37 Aligned_cols=68 Identities=12% Similarity=0.251 Sum_probs=46.8
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc-CcccccccCCC-CCCceEEEEecCC
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA-DDTVLLSQLPL-KSSLKMTMIGTVE 91 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l-~d~~~L~~~~i-~~g~~l~l~gs~~ 91 (332)
..-..+.+.+.+..|+.++++.+++.|||+++.|.|++ . ++... +....-..++- .....|+|+.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY-E-GRRLVLEPGRLAQHFPKTTEENPIFVVSREG 388 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEES-S-SSEECCCSSCBTTSSCCCCSSSCEEEEECC-
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHh-c-CCCCCCCCCCccccCCCCCCCCCeEEEecCC
Confidence 45567788999999999999999999999999999996 2 22332 33334444432 2335577775543
No 274
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=87.33 E-value=0.15 Score=43.12 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.5
Q ss_pred cceEEEecCCceEeccC
Q 042485 147 KKLLVLDIDYTLFDHRS 163 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~ 163 (332)
.|+++|||||||+++..
T Consensus 4 ~k~i~fDlDGTL~d~~~ 20 (235)
T 2om6_A 4 VKLVTFDVWNTLLDLNI 20 (235)
T ss_dssp CCEEEECCBTTTBCHHH
T ss_pred ceEEEEeCCCCCCCcch
Confidence 47999999999998753
No 275
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=87.09 E-value=0.44 Score=44.48 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=33.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l 207 (332)
...|++.+.++++.. +++++|-|+|....++++...+
T Consensus 143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~ 180 (327)
T 4as2_A 143 RVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADP 180 (327)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCG
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhc
Confidence 467899999999998 7999999999999999988764
No 276
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=86.18 E-value=1.4 Score=35.22 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=51.9
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHH-hCCCCCCceEeeccCCCcccC-cccccccCCCCCCceE
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICEL-TNVLPKRQKLLYPKIGNKLAD-DTVLLSQLPLKSSLKM 84 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~-tgvp~~~QkLl~~k~~gk~l~-d~~~L~~~~i~~g~~l 84 (332)
...+|.|+. .|....-.+..++||.+|.+.|... .+.....-.|+- -+..+.++ ++.+|.++||.+...|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t-~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT-TFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEE-TTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEec-CCCCCCCCCCCCcHHHCCCcCceEE
Confidence 357788885 6777778899999999999999986 445566677763 11345554 4689999999985443
No 277
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=86.15 E-value=0.22 Score=44.06 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.5
Q ss_pred CcceEEEecCCceEeccC
Q 042485 146 GKKLLVLDIDYTLFDHRS 163 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~ 163 (332)
..+.++|||||||+++..
T Consensus 17 ~~k~viFDlDGTLvds~~ 34 (260)
T 2gfh_A 17 RVRAVFFDLDNTLIDTAG 34 (260)
T ss_dssp CCCEEEECCBTTTBCHHH
T ss_pred cceEEEEcCCCCCCCCHH
Confidence 467999999999999864
No 278
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.59 E-value=0.68 Score=37.31 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 28 TVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
++.|-.++|+.+|++.|++..|+|+++|+|-.+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 467888999999999999999999999999764
No 279
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.41 E-value=2.2 Score=31.81 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=41.0
Q ss_pred EEEeCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGD-DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~-~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+|..+|+.+ +++.. .||.+|.+.+ +++++.-.+.. +|..... ..+.+..|++|+.|-++-
T Consensus 22 ~I~vNGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVav---Ng~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 22 MLQLNGKDV--KWKKDTGTIQDLLASY----QLENKIVIVER---NKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp CEEETTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEE---TTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred EEEECCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 456678754 45676 8999998876 56665444332 6776643 356667789999998773
No 280
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=83.00 E-value=3.3 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=54.5
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhC----CCCCCceEee----ccCCCcccCcccccccCCCCCCceEE
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTN----VLPKRQKLLY----PKIGNKLADDTVLLSQLPLKSSLKMT 85 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tg----vp~~~QkLl~----~k~~gk~l~d~~~L~~~~i~~g~~l~ 85 (332)
+.+++.|...+.+-++.+++++||.|.-..|.++.+ .+++.=-|.- .+ +|..+++..+|..|++.+|+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~-~~~Wl~~~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 2 VALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPK-KGIWLEAGKALDYYMLRNGDTME 80 (371)
T ss_dssp CCEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGG-GCEECCTTSBGGGGTCCTTCEEE
T ss_pred ccEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCC-cCEeccCCCCHHHhCCCCCceee
Confidence 346667776677788999999999999999987764 3455556652 23 45667778899999999998765
Q ss_pred EE
Q 042485 86 MI 87 (332)
Q Consensus 86 l~ 87 (332)
..
T Consensus 81 ~~ 82 (371)
T 3ivf_A 81 YR 82 (371)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 281
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=83.52 E-value=0.24 Score=44.23 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=61.4
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...+|++.++|+.|++ ++.++|.|......++.+++++|+. .+|+. +. +.. ..+-+..+
T Consensus 135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~--------~~f~~--~~----p~~---k~~~~~~l--- 194 (263)
T 2yj3_A 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ--------EYYSN--LS----PED---KVRIIEKL--- 194 (263)
Confidence 4589999999999997 6999999999999999999988763 12221 11 110 11122333
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+ ..++++++|.|+..-..+....|+.|.
T Consensus 195 --~-~~~~~~~~VGD~~~D~~aa~~Agv~va 222 (263)
T 2yj3_A 195 --K-QNGNKVLMIGDGVNDAAALALADVSVA 222 (263)
Confidence 3 267899999999877777667776544
No 282
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Probab=82.86 E-value=0.37 Score=44.45 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=31.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
..+|++.++|+.+.+.+.++|+|.....|+...++.+++
T Consensus 103 ~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~~~~ 141 (332)
T 1y8a_A 103 KFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGV 141 (332)
T ss_dssp CBCTTHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCceEEEcccchhhhh
Confidence 356788888888888778889998888888887776654
No 283
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=81.75 E-value=0.38 Score=42.76 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.9
Q ss_pred CcceEEEecCCceEecc
Q 042485 146 GKKLLVLDIDYTLFDHR 162 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~ 162 (332)
..+.++|||||||+++.
T Consensus 9 ~ikaviFDlDGTL~ds~ 25 (261)
T 1yns_A 9 EVTVILLDIEGTTTPIA 25 (261)
T ss_dssp TCCEEEECCBTTTBCHH
T ss_pred CCCEEEEecCCCccchh
Confidence 46799999999999975
No 284
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=79.55 E-value=3.9 Score=28.17 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=38.8
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+..+|+.+.+ ...||.+|.+.+ ++++..-.+.. +|..... ..+.+..|++|+.|-++-
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vav---N~~~v~~-~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLL---NEEAFLG-LEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEE---TTEEEEG-GGCCCCCCCTTCEEEEEE
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEE---CCEECCc-cccCCcCCCCCCEEEEEe
Confidence 4567876654 568999998887 45554433332 6766543 345566789999998773
No 285
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=79.23 E-value=8.4 Score=30.02 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=45.7
Q ss_pred ceEEEEEEeC---CeEEEEEecCCCCHHHHHHHHHHH--hCCCCC------CceEeeccC--CCcccCccc---------
Q 042485 14 EELTLTVKWS---GKEYTVRVCGDDSVAELKRRICEL--TNVLPK------RQKLLYPKI--GNKLADDTV--------- 71 (332)
Q Consensus 14 ~~i~i~vk~~---g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~------~QkLl~~k~--~gk~l~d~~--------- 71 (332)
..++++|.+. +..+.+.|-..+||.++|++|-.. -|.|-. ..-|= |+. .|..|.|..
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLE-wr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLE-WRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEE-EC--CCCEECCSSCTTSCC---C
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeE-EecCCCCccccccCccceecCcc
Confidence 4567777753 355778888999999999999765 345443 22233 432 233444322
Q ss_pred ----ccccCCCCCCceEEEE
Q 042485 72 ----LLSQLPLKSSLKMTMI 87 (332)
Q Consensus 72 ----~L~~~~i~~g~~l~l~ 87 (332)
||..|+|++|++|-|+
T Consensus 89 krLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEE
T ss_pred eEecchhhcCCCCCCEEEEE
Confidence 6778899999998875
No 286
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=78.37 E-value=18 Score=27.53 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=34.3
Q ss_pred CceEEEEEEeCCeEEEEEec--CCCCHHHHHHHHHHHhCCCCC
Q 042485 13 SEELTLTVKWSGKEYTVRVC--GDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~--~~~tV~~LK~~I~~~tgvp~~ 53 (332)
+.+++++|.++|+.+.+.|+ .+.|-.+|...+....|+..-
T Consensus 12 ~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp CSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred CccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 34688888899999887764 599999999999999998754
No 287
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=78.18 E-value=0.77 Score=41.23 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.8
Q ss_pred cceEEEecCCceEeccC
Q 042485 147 KKLLVLDIDYTLFDHRS 163 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~ 163 (332)
.++++||+||||+++..
T Consensus 32 i~~viFD~dGTL~ds~~ 48 (287)
T 3a1c_A 32 VTAVIFDKTGTLTKGKP 48 (287)
T ss_dssp CCEEEEECCCCCBCSCC
T ss_pred CCEEEEeCCCCCcCCCE
Confidence 46899999999999864
No 288
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=77.61 E-value=3.4 Score=29.54 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+..+|+.+.+ ...||.+|-+. .|++++.--+.. +|..+.. ..+.+.-|++|++|-++-
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~v---Ng~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVAL---NYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEE---SSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEE---CCEECCh-HHcCcccCCCCCEEEEEc
Confidence 4566886655 56899998765 588887766553 7776643 466777899999999873
No 289
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=77.15 E-value=2.2 Score=43.74 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=42.2
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
...+.+.+.+.++.|+.+|+..|++.|||+++.|-++. . .|-.++.....++|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~-~-~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQ-A-SGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEES-S-SSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHh-c-cCCCCCCCcchhhh
Confidence 45666778999999999999999999999999999995 3 45555555555554
No 290
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=76.81 E-value=10 Score=30.66 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=48.6
Q ss_pred ceEEEEEEeC-------CeEEEEEecCCCCHHHHHHHHHHH--hCCCCCC-----ceEeeccC--CCcc-cCcc--c---
Q 042485 14 EELTLTVKWS-------GKEYTVRVCGDDSVAELKRRICEL--TNVLPKR-----QKLLYPKI--GNKL-ADDT--V--- 71 (332)
Q Consensus 14 ~~i~i~vk~~-------g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~~-----QkLl~~k~--~gk~-l~d~--~--- 71 (332)
..++|.|... .+.++|.|=..+||.++|++|-+. -|+|-.+ .--+-|+. +|++ |.|. +
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 3567776542 245788888999999999999876 3444332 11222432 2322 4332 2
Q ss_pred --------ccccCCCCCCceEEEEe
Q 042485 72 --------LLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 72 --------~L~~~~i~~g~~l~l~g 88 (332)
||..|+|++|++|-|+-
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~ 127 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVP 127 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEE
T ss_pred cCCceeecchhccCCCCCCEEEEEE
Confidence 78889999999998874
No 291
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=76.09 E-value=2.5 Score=30.77 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=41.4
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC-CCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVL-PKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp-~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+|..+|+.+.+......||.+|-+.+ |++ ++.--+.. +|..+.. ..+.+..|++|++|-++
T Consensus 2 ~I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVav---Ng~iVpr-~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVEL---NGEVLER-EAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEE---TTEECCT-THHHHCEECSSBCEEEC
T ss_pred EEEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEE---CCEECCh-HHcCcccCCCCCEEEEE
Confidence 35567876554321678999987764 677 66655543 6776643 45667778999999877
No 292
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=75.21 E-value=3.7 Score=28.46 Aligned_cols=58 Identities=9% Similarity=0.171 Sum_probs=38.7
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
++.+|+.+ +++...||.+|.+.+ ++++..-.+.. +|..... ..+.+..|++|+.|-++
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vav---N~~~v~~-~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAI---NQQIVPR-EQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEE---TTEEECH-HHHTTCCCCTTEEECEE
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEE---CCEECCc-hhcCCcCCCCCCEEEEE
Confidence 45667754 556788999999887 55655443332 6766543 23445678999999876
No 293
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=74.99 E-value=11 Score=28.77 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=31.8
Q ss_pred eEEEEEEeC--------CeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 15 ELTLTVKWS--------GKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 15 ~i~i~vk~~--------g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.|.|+|.++ +..+.|-|+++.+..+|..+|.++.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 377777777 5678899999999999999999998875
No 294
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=72.66 E-value=11 Score=29.23 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=41.9
Q ss_pred eEEEEEEe-------CC--eEEEEEecC---CCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc-------cCcc--ccc
Q 042485 15 ELTLTVKW-------SG--KEYTVRVCG---DDSVAELKRRICELTNVLPKRQKLLYPKIGNKL-------ADDT--VLL 73 (332)
Q Consensus 15 ~i~i~vk~-------~g--~~~~i~v~~---~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~-------l~d~--~~L 73 (332)
+|+|+|++ .| +.+.|+++. ..||.+|-+.|.+.. |..+..|+. . +|++ .++. ..|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~-~-~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFI-Q-GDSVRPGILVLINDADWELL 86 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHC-C-SSSCCSSEEEEESSSBHHHH
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCc-c-CCcccCCeEEEECCeeeecc
Confidence 46667663 13 357788884 369999988887665 344444431 1 2211 1221 122
Q ss_pred c--cCCCCCCceEEEEecC
Q 042485 74 S--QLPLKSSLKMTMIGTV 90 (332)
Q Consensus 74 ~--~~~i~~g~~l~l~gs~ 90 (332)
. ++.|++|+.|.++=+.
T Consensus 87 ~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTL 105 (114)
T ss_dssp CTTTCBCCSSEEEEEEECS
T ss_pred CCcCcCCCCCCEEEEeCCC
Confidence 2 3678999998887433
No 295
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=71.20 E-value=29 Score=25.73 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred eEEEEEEe-------CC-eEEEEEecCCCCHHHHHHHHHHHhC-CCCC--------CceEeeccCCCcccCcccccccCC
Q 042485 15 ELTLTVKW-------SG-KEYTVRVCGDDSVAELKRRICELTN-VLPK--------RQKLLYPKIGNKLADDTVLLSQLP 77 (332)
Q Consensus 15 ~i~i~vk~-------~g-~~~~i~v~~~~tV~~LK~~I~~~tg-vp~~--------~QkLl~~k~~gk~l~d~~~L~~~~ 77 (332)
.|+|+|++ .| ....++++...||.+|.+.|..... +... +..+.... +|..... +..
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~V-Ng~~v~~-----~~~ 82 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAV-NGRYVSW-----DEE 82 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEE-TTBCCCT-----TCB
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEE-CCEECCC-----CCC
Confidence 35566663 13 3567888888999999999987641 1000 11111111 5655542 446
Q ss_pred CCCCceEEEE
Q 042485 78 LKSSLKMTMI 87 (332)
Q Consensus 78 i~~g~~l~l~ 87 (332)
|++|+.|.++
T Consensus 83 L~dGDeV~i~ 92 (98)
T 1vjk_A 83 LKDGDVVGVF 92 (98)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 7999998876
No 296
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=68.64 E-value=8 Score=27.29 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=36.8
Q ss_pred EEEEEe-CC-eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 17 TLTVKW-SG-KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 17 ~i~vk~-~g-~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.|+|++ +. ..-.+++ ...||.+|.+.|....++....+.+.... +|....+ .+..|++|+.|.++
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vav-N~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIAL-NDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEE-SSSEECC----TTCCCCTTCEEEEE
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEE-CCEEcCC----CCcCCCCCCEEEEE
Confidence 466663 21 1134677 67899999999986433322112222122 5655322 24458999999876
No 297
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=66.71 E-value=33 Score=27.26 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=46.3
Q ss_pred eEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHH--hCCCC------CCceEeeccC--CCcc-cCcc----------
Q 042485 15 ELTLTVKW---SGKEYTVRVCGDDSVAELKRRICEL--TNVLP------KRQKLLYPKI--GNKL-ADDT---------- 70 (332)
Q Consensus 15 ~i~i~vk~---~g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~------~~QkLl~~k~--~gk~-l~d~---------- 70 (332)
.+++++.+ ++..+.+.|=..+||.+.|++|-.. -|+|- +..-|= |+. .|.+ |.|.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLE-wr~g~~~~~iL~D~D~ts~~~~~~ 82 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLE-WFASSTQSYILRDLDDTSVVEDGR 82 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEE-EECSSSCEEECCSSSTTSCEETTE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceE-EecCCCCceEeecCCCcceecCce
Confidence 45555553 2445778888899999999999765 34443 233333 331 1222 3331
Q ss_pred ---cccccCCCCCCceEEEE
Q 042485 71 ---VLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 71 ---~~L~~~~i~~g~~l~l~ 87 (332)
.||..|+|++|++|-|+
T Consensus 83 krLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 83 KKLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp ECCCBTTTTTCCTTCEEEEE
T ss_pred eEeccccccCCCCCCEEEEE
Confidence 27888999999999887
No 298
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=66.18 E-value=18 Score=28.36 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=46.3
Q ss_pred ceEEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHH--hCCCCC------CceEeeccC--CCc-ccCcc--------
Q 042485 14 EELTLTVKWS----GKEYTVRVCGDDSVAELKRRICEL--TNVLPK------RQKLLYPKI--GNK-LADDT-------- 70 (332)
Q Consensus 14 ~~i~i~vk~~----g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~------~QkLl~~k~--~gk-~l~d~-------- 70 (332)
..++++|.+. ...+.+.|-..+||.++|++|-.. -|.|-. ..-|= |+. .|. .|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLE-wr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLE-WRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEE-EECTTSCEEEECSSSTTCCC--
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEE-EecCCCCceEeecCCCccEecC
Confidence 4567777642 234778888899999999999765 345543 22232 431 122 23321
Q ss_pred -----cccccCCCCCCceEEEE
Q 042485 71 -----VLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 71 -----~~L~~~~i~~g~~l~l~ 87 (332)
.||+.|+|++|++|-|+
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~ 112 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALV 112 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEE
T ss_pred cceEeccccccCCCCCCEEEEE
Confidence 16778899999998876
No 299
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=65.45 E-value=22 Score=26.83 Aligned_cols=69 Identities=9% Similarity=0.026 Sum_probs=45.0
Q ss_pred CCceEEEEEEe--CCe--EEEEEecCCCCHHHHHHHHHH---HhCCCCCCceEeeccCCCcccCcccccccCCCCCCceE
Q 042485 12 SSEELTLTVKW--SGK--EYTVRVCGDDSVAELKRRICE---LTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKM 84 (332)
Q Consensus 12 ~~~~i~i~vk~--~g~--~~~i~v~~~~tV~~LK~~I~~---~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l 84 (332)
+-.+|+|.|.| .++ .+.+++++.+||.++-+++.- .+.|.....++.. .|+.... +.-|++|+.|
T Consensus 9 ~~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~V---ng~~v~~-----d~~L~dGDRV 80 (97)
T 2hj1_A 9 SLNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGI---FSRPIKL-----TDVLKEGDRI 80 (97)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEE---EECSCCT-----TCBCCTTCEE
T ss_pred ccceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEE---cCEECCC-----CccCCCCCEE
Confidence 34578888885 454 345688999999999888643 2345554556543 4766653 3347899999
Q ss_pred EEEe
Q 042485 85 TMIG 88 (332)
Q Consensus 85 ~l~g 88 (332)
-+.-
T Consensus 81 EIyr 84 (97)
T 2hj1_A 81 EIYR 84 (97)
T ss_dssp EECC
T ss_pred EEEe
Confidence 8763
No 300
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.17 E-value=27 Score=26.56 Aligned_cols=38 Identities=5% Similarity=0.080 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
..+.|++.++|++..|.++-.-+..+|.+++.+..|-+
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ 44 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS 44 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe
Confidence 45667777999999999999999999999999999953
No 301
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=61.72 E-value=19 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=41.7
Q ss_pred EEec----CCCCHHHHHHHHHHHhCCCC-------CCceEeeccCCCcccCc--ccccccCCCCCCceEEEEecCCC
Q 042485 29 VRVC----GDDSVAELKRRICELTNVLP-------KRQKLLYPKIGNKLADD--TVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 29 i~v~----~~~tV~~LK~~I~~~tgvp~-------~~QkLl~~k~~gk~l~d--~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
+.|+ ...|+++|-+.|....|... ..|+|+| .-- .+| +.+|+++|+++|+.|+++---.+
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLy---D~D-fDDnl~k~L~dLgv~~gsfLtv~DEdde 82 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLF---DYD-FEDLNDRTLSEINLGNGSIILFSDEEGD 82 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEE---ETT-BCTTTTSBTTTTTCCTTCEEEEEESCCS
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEe---CCC-ccccccCcHHHcCcCCCcEEEEEccccc
Confidence 4554 45799999999988888542 2466765 211 122 46899999999999998865433
No 302
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=61.43 E-value=5.4 Score=37.81 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=35.9
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++|++.+++++|.+ +++++|.|++...+++++.+++|+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTS
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCc
Confidence 59999999999998 699999999999999999999876
No 303
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=61.37 E-value=53 Score=25.98 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=46.1
Q ss_pred ceEEEEEEe---C-------CeEEEEEecCCCCHHHHHHHHHHH----hCCCCCC----ceEeeccCC--CcccCc----
Q 042485 14 EELTLTVKW---S-------GKEYTVRVCGDDSVAELKRRICEL----TNVLPKR----QKLLYPKIG--NKLADD---- 69 (332)
Q Consensus 14 ~~i~i~vk~---~-------g~~~~i~v~~~~tV~~LK~~I~~~----tgvp~~~----QkLl~~k~~--gk~l~d---- 69 (332)
..++++|.. . .+.+++.|-..+||.++|++|-.. .|.|-.. .-|= |+.+ |.+|.|
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLE-wr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLE-LQMGTRQKELLDIDSS 96 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEE-EEETTEEEEECSSCTT
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceE-EecCCCcceeeccCCc
Confidence 457777776 2 245788888999999999998644 3776642 1121 2211 111111
Q ss_pred ----------ccccccCCCCCCceEEEE
Q 042485 70 ----------TVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 70 ----------~~~L~~~~i~~g~~l~l~ 87 (332)
=.||+.|+|++|++|-|+
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEe
Confidence 126777899999998775
No 304
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=61.36 E-value=5.6 Score=39.44 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 28 TVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
.+.|..++|+.+||++|++..|+|+++|+|-.+
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 467889999999999999999999999999653
No 305
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=61.07 E-value=5.1 Score=37.99 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=16.1
Q ss_pred CCCcEEEEeCCcccccc-----CCCCeeeeccc
Q 042485 254 SSKNTIMFDDLRRNFVM-----NPQNGLAIKPF 281 (332)
Q Consensus 254 ~~~~~iivDD~~~~~~~-----~p~Ngi~I~~f 281 (332)
+...++.+=|+.--+.| +...++.|.+.
T Consensus 311 ~~~~i~a~GDs~~D~~ML~~~~~~~~~liinr~ 343 (385)
T 4gxt_A 311 NYGPIMVGGDSDGDFAMLKEFDHTDLSLIIHRA 343 (385)
T ss_dssp EECCSEEEECSGGGHHHHHHCTTCSEEEEECCS
T ss_pred CCCcEEEEECCHhHHHHHhcCccCceEEEEcCC
Confidence 45567888887655543 33445555543
No 306
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=59.70 E-value=37 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=35.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhC-C----CCC-----CceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTN-V----LPK-----RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tg-v----p~~-----~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
....++++...||.+|.+.|..... + -.+ ..-++.. +|..... +..|++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~V--N~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLR--NGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEE--TTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEE--CCEECCC-----CcccCCCCEEEEE
Confidence 4677888888999999999987652 1 000 0112211 5655543 3457899998876
No 307
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.39 E-value=67 Score=23.91 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=47.1
Q ss_pred EEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVKW--SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk~--~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
-.++|.- +..++=|-+ .+..+|+.+.....+++...-.|. +.-.|..++|+.-+..+. ++..+|++...+.
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lv-LeeDGT~VddEeyF~tLp--~nT~lmvL~~ge~ 82 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLV-LEEDGTVVDTEEFFQTLG--DNTHFMILEKGQK 82 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEE-ETTTCCBCCCHHHHTTSC--SSEEEEEEETTCC
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEE-EeeCCcEEechhhhhhCC--CCCEEEEEcCCCc
Confidence 3445552 234454544 489999999999999976555554 432688888888777764 6677777765544
No 308
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=52.69 E-value=13 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=25.5
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHH
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRI 44 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I 44 (332)
|...|++..+|+.+.++++++.|+.++-...
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHHT
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHHc
Confidence 3456888899999999999999999876553
No 309
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=49.77 E-value=16 Score=30.25 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.8
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRR 43 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~ 43 (332)
+.+.|++..+|+.+.++++++.|+.++-..
T Consensus 8 ~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 346688888999999999999999886544
No 310
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=49.30 E-value=8.4 Score=29.85 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=34.3
Q ss_pred eEEEEEecC----CCCHHHHHHHHHHHhCCCCCCceEeeccCCC--c------cc-C--cccccc--cCCCCCCceEEEE
Q 042485 25 KEYTVRVCG----DDSVAELKRRICELTNVLPKRQKLLYPKIGN--K------LA-D--DTVLLS--QLPLKSSLKMTMI 87 (332)
Q Consensus 25 ~~~~i~v~~----~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~g--k------~l-~--d~~~L~--~~~i~~g~~l~l~ 87 (332)
+++.++++. ..||.+|-+.|.+.. +..+..|+ .. +| . .+ + |-..|. ++.|++|+.|.++
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf-~~-~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLL-VD-QTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHH-BC-SSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhE-ec-CCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 456677773 359999877776654 44455554 12 23 1 11 1 112222 3568888887776
Q ss_pred ecC
Q 042485 88 GTV 90 (332)
Q Consensus 88 gs~ 90 (332)
-+.
T Consensus 97 stl 99 (110)
T 2k9x_A 97 STL 99 (110)
T ss_dssp ECC
T ss_pred CCC
Confidence 443
No 311
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=47.87 E-value=38 Score=25.15 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHHh
Q 042485 25 KEYTVRVC--GDDSVAELKRRICELT 48 (332)
Q Consensus 25 ~~~~i~v~--~~~tV~~LK~~I~~~t 48 (332)
+..+++++ +..||.+|.+.|.+..
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 45667887 6789999999998876
No 312
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=47.78 E-value=16 Score=27.69 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=40.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCC----------ceEeeccCCCcccCc------ccccccCCCCCCceEEEE
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKR----------QKLLYPKIGNKLADD------TVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~----------QkLl~~k~~gk~l~d------~~~L~~~~i~~g~~l~l~ 87 (332)
+....|+++++.|+.+|-+.|.+.-...-.+ .|=+|+. +-..++. +.+|.++|+.+|+-|++.
T Consensus 4 ~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq-~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 4 QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQ-SVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp -CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECS-SCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEe-CcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3345789999999999999999843322221 2333332 1112221 346899999999988874
No 313
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=47.70 E-value=20 Score=32.34 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 042485 10 ASSSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLP 52 (332)
Q Consensus 10 ~~~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~ 52 (332)
.+....+.+.|.. .|....+++++.+|+.+|=++|.+..|+..
T Consensus 12 ~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 12 ENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp -----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred CCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 3345678888884 678889999999999999999999999874
No 314
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=45.71 E-value=98 Score=23.59 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=49.9
Q ss_pred eEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCC-cc-cC--cccccccCCCCCCceEEEEec
Q 042485 15 ELTLTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGN-KL-AD--DTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk~~g~~~-~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~g-k~-l~--d~~~L~~~~i~~g~~l~l~gs 89 (332)
.+-..|-....+| ++.+..+.|+.+++..+.++.+...+.++|.-.|..| |. ++ |......++ -+..|.+--.
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~--~NgRLfvc~k 86 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLE--ASGRIYVYRK 86 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSC--SSCEEEEEEC
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 4445565556555 5889999999999999999999888789998666433 32 33 323344444 4567776543
Q ss_pred C
Q 042485 90 V 90 (332)
Q Consensus 90 ~ 90 (332)
-
T Consensus 87 d 87 (104)
T 1wgy_A 87 D 87 (104)
T ss_dssp C
T ss_pred H
Confidence 3
No 315
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=45.13 E-value=63 Score=24.31 Aligned_cols=38 Identities=5% Similarity=0.095 Sum_probs=33.4
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
..+.|.+.+.|++..|.++---...+|.+++....|-+
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~ 56 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS 56 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe
Confidence 45777777999999999999999999999999999943
No 316
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=44.19 E-value=43 Score=25.05 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=34.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL 66 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~ 66 (332)
.+|.+.|+..+|=-++|+.++.+.||.+..-.-+.. .|+.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~--~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV--KGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE--CCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe--CCce
Confidence 579999999999999999999999999998877654 3543
No 317
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.93 E-value=20 Score=27.08 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCCCCceEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHHhCC
Q 042485 9 TASSSEELTLTVKWSGKEYTV-RVCGDDSVAELKRRICELTNV 50 (332)
Q Consensus 9 ~~~~~~~i~i~vk~~g~~~~i-~v~~~~tV~~LK~~I~~~tgv 50 (332)
++.+.|.++|-| .|....| -|++.+|..|+-.+|.+.+|-
T Consensus 3 ~~~~~mel~Vwv--~g~er~VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 3 SGSSGMELKVWV--DGVQRIVCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CCSCCBCCCEEE--TTEEECCSSBCSSSCHHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEEE--CCceeEEECCCCCCcHHHHHHHHHhccCC
Confidence 344566666666 7777767 599999999999999998883
No 318
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=43.40 E-value=29 Score=24.22 Aligned_cols=53 Identities=6% Similarity=0.073 Sum_probs=34.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCc--eEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQ--KLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~Q--kLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
...++++...||.+|.+.|.....- ..+- .+.. +|+....+ ..|++|+.|-++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~v---Ng~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAV---NEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEE---TTEEECTT-----SEECTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEE---CCEECCCC-----CCcCCCCEEEEE
Confidence 4567778889999999998776310 0111 2222 67666543 457899998876
No 319
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=43.33 E-value=72 Score=24.31 Aligned_cols=40 Identities=3% Similarity=0.149 Sum_probs=34.3
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
..+.|.+.+.|++..|.++.--...+|.+++....|-+.+
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld 69 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD 69 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 3467777799999999999999999999999999995443
No 320
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=42.04 E-value=1e+02 Score=22.73 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=33.9
Q ss_pred ceEEEEEEeCCeEEEEEecC--CCCHHHHHHHHHHHhCCCCC
Q 042485 14 EELTLTVKWSGKEYTVRVCG--DDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~--~~tV~~LK~~I~~~tgvp~~ 53 (332)
.++++.|.++|+.+.+.|+- +.|-.+|...+....|+..-
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~ 46 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 46 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSE
T ss_pred ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCce
Confidence 46788888999999877754 99999999999999998743
No 321
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=41.86 E-value=38 Score=23.75 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=32.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhC-----CCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 26 EYTVRVCGDDSVAELKRRICELTN-----VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tg-----vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
...++ +...||.+|.+.|..... ++...-.+. . +|..... +..|++|+.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~-v--N~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAA-V--NQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEE-E--TTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEE-E--CCEECCC-----CCCCCCCCEEEEe
Confidence 45566 677899999999874421 111221222 2 6765543 3457899998876
No 322
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=40.25 E-value=25 Score=29.13 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRR 43 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~ 43 (332)
+.|++..+|+.+.++++++.|+.++-..
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 3577778999999999999999986554
No 323
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=38.09 E-value=11 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 28 TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.++++...||.+|.+.+ +++++.-.+.. +|+..+.+ ..|++|+.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~Vav---Ng~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKV---NGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEE---TTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEE---CCEECCCC-----CCcCCCCEEEEE
Confidence 34667788999998876 46665443332 67766543 457888877654
No 324
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.99 E-value=93 Score=23.08 Aligned_cols=37 Identities=3% Similarity=0.175 Sum_probs=32.6
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.+.|.+.+.|++..|.++---...+|.+++....|-+
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~ 40 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP 40 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe
Confidence 3567777999999999999999999999999999943
No 325
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=37.99 E-value=59 Score=28.80 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=32.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
|.+.|..-+.++.+.+++.+|+.+|=++|.+..|+...
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~ 39 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREV 39 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCG
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCc
Confidence 56777766667889999999999999999999998753
No 326
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=37.78 E-value=1.2e+02 Score=30.36 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred ceEEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHH--hCCCCC------CceEeeccC--CCc-ccCcc--------
Q 042485 14 EELTLTVKWS----GKEYTVRVCGDDSVAELKRRICEL--TNVLPK------RQKLLYPKI--GNK-LADDT-------- 70 (332)
Q Consensus 14 ~~i~i~vk~~----g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~------~QkLl~~k~--~gk-~l~d~-------- 70 (332)
..++++|... ...+.|.|-..+||.++|++|-.. -|+|-. ..-|= |+. +|. .|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLE-wr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLE-WRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEE-EESCSSCEEEECSSSTTCCEET
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCcccee-EeeCCCCceeeccCCccccccC
Confidence 4678887732 245778888999999999999765 345433 23332 331 122 23221
Q ss_pred -----cccccCCCCCCceEEEEe
Q 042485 71 -----VLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 71 -----~~L~~~~i~~g~~l~l~g 88 (332)
.||+.|+|++|++|-|+-
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEE
T ss_pred ceeEecchhhcCCCCCceEEEEe
Confidence 278889999999999874
No 327
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=37.69 E-value=28 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=23.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHH
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRR 43 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~ 43 (332)
+.|++..+|+.+.++++++.|+.++-..
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 4577778999999999999999986554
No 328
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.24 E-value=68 Score=24.26 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCc
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQ 55 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~Q 55 (332)
+.|+|-. .|..-.|.|++++|+.|+=+.|..+.++..+.-
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~ 50 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET 50 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC
Confidence 3344443 466678999999999999999998888765433
No 329
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=37.11 E-value=50 Score=29.71 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=44.2
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCc-eEeeccCCCc--ccCcccccccCCCCCCc
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQ-KLLYPKIGNK--LADDTVLLSQLPLKSSL 82 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~Q-kLl~~k~~gk--~l~d~~~L~~~~i~~g~ 82 (332)
...+.+.|..-+.++.+++++.+|+.+|=+.|....|+....- -|.+.. .|. .++.+..+.+.+++.+.
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~-~~~~~wL~~~~~i~~q~~~~~~ 91 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDKKVLDHDVSKEE 91 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEE-TTEEEECCTTSBGGGSSCCCSS
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEe-CCcCeeCCCccCHHHcCCCCCC
Confidence 4568888885444788999999999999999999999875210 111111 221 24555566665544443
No 330
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=36.84 E-value=86 Score=23.15 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=21.1
Q ss_pred eEEEEEEeCCe------EEEEEecCCCCHHHHHHHHHHHh
Q 042485 15 ELTLTVKWSGK------EYTVRVCGDDSVAELKRRICELT 48 (332)
Q Consensus 15 ~i~i~vk~~g~------~~~i~v~~~~tV~~LK~~I~~~t 48 (332)
||+|+|++-+. .-.++++ ..||.+|.+.|....
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~ 41 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKY 41 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHC
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHC
Confidence 35677774221 1123444 689999999998774
No 331
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=36.52 E-value=1e+02 Score=22.64 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=44.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 28 TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
.-.++-..+++.||+.|+...|+.-+.=.+. + ....++++.+|.+-+++-...|-+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~-L--Qd~~L~~~k~LvdQcVqgeGlVQi 61 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEIC-L--QDIQLDPDRSLFDQGVKTDGTVQL 61 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEE-E--TTEECCTTSBTTTSSCCCCSEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEE-e--eccccCCCccHHHhhcccccEEEE
Confidence 3457778999999999999999998887765 3 355688889999999875555444
No 332
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=36.07 E-value=1.1e+02 Score=30.79 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=48.5
Q ss_pred ceEEEEEEeC-C------eEEEEEecCCCCHHHHHHHHHHH--hCCCCCCc------eEeeccCC--Cc-ccCcc-----
Q 042485 14 EELTLTVKWS-G------KEYTVRVCGDDSVAELKRRICEL--TNVLPKRQ------KLLYPKIG--NK-LADDT----- 70 (332)
Q Consensus 14 ~~i~i~vk~~-g------~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~~Q------kLl~~k~~--gk-~l~d~----- 70 (332)
..++++|-.. | ..+.|.|-..+||.++|++|-.. -|+|-.++ -|= |+.| |. .|.|.
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLE-wr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVE-WRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEE-EECSSSCEEEECSSSTTCC
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceE-EeeCCCCceeecccCccce
Confidence 4577887642 2 34778888999999999999754 45555432 232 3321 22 23332
Q ss_pred --------cccccCCCCCCceEEEEe
Q 042485 71 --------VLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 71 --------~~L~~~~i~~g~~l~l~g 88 (332)
.||+.|+|++|++|-|+-
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred ecCcceeecchhhcCCCCCcEEEEEe
Confidence 278899999999998874
No 333
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=36.02 E-value=47 Score=25.44 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=41.5
Q ss_pred ceEEEEEEeCC-eE------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVKWSG-KE------YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk~~g-~~------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|.|.|.-.+ .. -..-|+.+.||++|...|....+++++..-.++. ++.+..-+++++++
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~v--n~~~p~~~~~m~~L 93 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV--NNTIPPTSATMGQL 93 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEB--TTBCCCTTSBHHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEE--CCEecCccChHHHH
Confidence 46777777433 21 2246788999999999999999999876544543 45454555666664
No 334
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}
Probab=36.00 E-value=31 Score=30.13 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=56.6
Q ss_pred ecCCcHHHHHHHHHh--CCcEEEEcCC---------------------cHHHHHHHHHHhCCCCCCCceEEEEecCC---
Q 042485 171 LMRPYLHEFLTAAYA--EYDIMIWSAT---------------------SMKWVELKMEELGVLTNPNYKITALLDHL--- 224 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~--~yeivI~Tas---------------------~~~ya~~~l~~l~~~~~~~~~~~~~~d~~--- 224 (332)
..+|++.++|+.+.+ .+.+.+.|+. ....+..+++.+|+. ..+.....
T Consensus 122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------~~~~~~~~~~~ 195 (289)
T 3gyg_A 122 FSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVS------VNINRCNPLAG 195 (289)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHHHHHHHHTEE------EEEEECCGGGT
T ss_pred CCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHHHHHHHcCCC------EEEEEcccccc
Confidence 456899999999976 4566777766 445666666666552 11111000
Q ss_pred -----ceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 225 -----AMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 225 -----~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
..+.+.. .+...-..+..+..++ + .+++++++|-|+..-..+....|+.|..
T Consensus 196 ~~~~~~~~~~~~--~~~~k~~~~~~~~~~~-~-~~~~~~~~~GDs~~D~~~~~~ag~~~~~ 252 (289)
T 3gyg_A 196 DPEDSYDVDFIP--IGTGKNEIVTFMLEKY-N-LNTERAIAFGDSGNDVRMLQTVGNGYLL 252 (289)
T ss_dssp CCTTEEEEEEEE--SCCSHHHHHHHHHHHH-T-CCGGGEEEEECSGGGHHHHTTSSEEEEC
T ss_pred CCCCceEEEEEe--CCCCHHHHHHHHHHHc-C-CChhhEEEEcCCHHHHHHHHhCCcEEEE
Confidence 1111111 1111112233332222 3 3889999999999888877777766543
No 335
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=35.86 E-value=3.6 Score=35.97 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=52.4
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHH--HHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWV--ELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya--~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
..|++.++|+.+.+.+.+ |.|++...+. ..++.. ...+..+|+. .+. .......||-+.++...
T Consensus 131 ~~~~~~~~l~~L~~g~~~-i~tn~~~~~~~~~~~l~~-------~~~l~~~~~~--~~~----~~~~~~~KP~~~~~~~~ 196 (263)
T 1zjj_A 131 TYEKLKYATLAIRNGATF-IGTNPDATLPGEEGIYPG-------AGSIIAALKV--ATN----VEPIIIGKPNEPMYEVV 196 (263)
T ss_dssp BHHHHHHHHHHHHTTCEE-EESCCCSEEEETTEEEEC-------HHHHHHHHHH--HHC----CCCEECSTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEE-EEECCCccccCCCCCcCC-------cHHHHHHHHH--HhC----CCccEecCCCHHHHHHH
Confidence 458999999999988888 8898876544 111000 0000001110 000 00011237766666542
Q ss_pred CCcCCCCcEEEEeCCc-cccccCCCCeeee
Q 042485 250 PEFYSSKNTIMFDDLR-RNFVMNPQNGLAI 278 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I 278 (332)
-.+.+++++++|.|++ .-+......|+..
T Consensus 197 ~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ 226 (263)
T 1zjj_A 197 REMFPGEELWMVGDRLDTDIAFAKKFGMKA 226 (263)
T ss_dssp HHHSTTCEEEEEESCTTTHHHHHHHTTCEE
T ss_pred HHhCCcccEEEECCChHHHHHHHHHcCCeE
Confidence 1114899999999996 6666666667653
No 336
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=35.78 E-value=20 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=25.9
Q ss_pred ceEEEEEEeCCeEEEEEecCCC---CHHHHHHHH
Q 042485 14 EELTLTVKWSGKEYTVRVCGDD---SVAELKRRI 44 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~---tV~~LK~~I 44 (332)
+.++|.+..+++++.+++..+. |+.+|.++|
T Consensus 28 ~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 28 VEMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred CCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 3577788889999999999998 999988774
No 337
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=35.61 E-value=0.96 Score=39.07 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=52.2
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecC-CceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDH-LAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~-~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...|++.++|+.+.+.+.+ |.|+....+....+..+++. .+++. ...+ ........||-+.++..
T Consensus 122 ~~~~~~~~~l~~l~~~~~~-i~t~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~Kp~~~~~~~~ 188 (259)
T 2ho4_A 122 FHYQLLNQAFRLLLDGAPL-IAIHKARYYKRKDGLALGPG--------PFVTALEYAT----DTKAMVVGKPEKTFFLEA 188 (259)
T ss_dssp CBHHHHHHHHHHHHTTCCE-EESCCCSEEEETTEEEECSH--------HHHHHHHHHH----TCCCEECSTTSHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEE-EEECCCCcCcccCCcccCCc--------HHHHHHHHHh----CCCceEecCCCHHHHHHH
Confidence 3568999999999977888 88888765543222111110 00000 0000 00000112554333332
Q ss_pred --CCCcCCCCcEEEEeCCc-cccccCCCCeeeecc
Q 042485 249 --FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKP 280 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~ 280 (332)
.-+ .++++|++|.|++ .-..+....|+...-
T Consensus 189 ~~~lg-i~~~~~~~iGD~~~~Di~~a~~aG~~~i~ 222 (259)
T 2ho4_A 189 LRDAD-CAPEEAVMIGDDCRDDVDGAQNIGMLGIL 222 (259)
T ss_dssp GGGGT-CCGGGEEEEESCTTTTHHHHHHTTCEEEE
T ss_pred HHHcC-CChHHEEEECCCcHHHHHHHHHCCCcEEE
Confidence 114 4899999999998 777766666765443
No 338
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.86 E-value=46 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=32.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
..+|.+.|+..+|=.++|+.++.+.||.+..-.-+.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 357999999999999999999999999998877665
No 339
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=34.57 E-value=1.1e+02 Score=22.45 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=26.9
Q ss_pred eEEEEEEe--CCeEEEEEecC-CCCHHHHHHHHHHHhCCCC
Q 042485 15 ELTLTVKW--SGKEYTVRVCG-DDSVAELKRRICELTNVLP 52 (332)
Q Consensus 15 ~i~i~vk~--~g~~~~i~v~~-~~tV~~LK~~I~~~tgvp~ 52 (332)
|-.|.-|+ ..+.-.|.+++ .-+|.|||++|..+.+.-.
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~ 46 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKA 46 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCT
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCC
Confidence 33466664 34445688875 5799999999998877644
No 340
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=34.51 E-value=29 Score=28.67 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHH
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKR 42 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~ 42 (332)
+.|++..+|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 568888899999999999999998643
No 341
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=33.18 E-value=65 Score=23.98 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=32.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
.+|.+.|+..+|=.++|+.++.+.||.+..-.-+..
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~ 57 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHV 57 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeee
Confidence 578999999999999999999999999998877654
No 342
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=32.52 E-value=83 Score=24.17 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhC
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTN 49 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tg 49 (332)
+++.+.|.+-. +|-..+++++.++|+.++|+.|.++-+
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~ 54 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEAR 54 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGG
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHH
Confidence 34567777774 677778999999999999999988744
No 343
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=32.16 E-value=1.3e+02 Score=21.18 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=33.1
Q ss_pred EEEecCCCCHHHHHHHHHHHhC------CC-----CCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 28 TVRVCGDDSVAELKRRICELTN------VL-----PKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tg------vp-----~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.++++...||.+|.+.|..... +- ...-.+. . +|...... ...+..|++|+.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~-v--N~~~v~~~-~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIIL-V--NGNNITSM-KGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEE-E--SSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEE-E--CCEEcccc-CCCCcCCCCCCEEEEe
Confidence 3466667899999999987641 10 0111222 1 56554321 1234568999998876
No 344
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.28 E-value=78 Score=23.23 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
..+|.+.|+..+|=.++|+.++.+.||.+..-.-+.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~ 58 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLI 58 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeE
Confidence 357999999999999999999999999998877664
No 345
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=29.85 E-value=56 Score=24.49 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 27 YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 27 ~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
|++.|+..+|=.++|+.|+.+.||.+..-.-+..
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~ 58 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNV 58 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCB
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEe
Confidence 8999999999999999999999999998887754
No 346
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=29.67 E-value=61 Score=24.00 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=40.7
Q ss_pred eEEEEEEeCCe-----EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc-cCccccccc
Q 042485 15 ELTLTVKWSGK-----EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL-ADDTVLLSQ 75 (332)
Q Consensus 15 ~i~i~vk~~g~-----~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~-l~d~~~L~~ 75 (332)
.|+|..+-.|. +-..-|+.+.||++|...|....+++++..-.+|. +... ...+.++++
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV--nn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV--NQSFAPSPDQEVGT 69 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE--TTTBCCCTTCBHHH
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCccCCChhhHHHH
Confidence 46666665443 22457899999999999999999999987766664 3432 333455554
No 347
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=28.20 E-value=1.7e+02 Score=22.85 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=50.0
Q ss_pred ceEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHHhCCCCC------CceEeeccCCC-cc-cC--cccccccCCCCCCc
Q 042485 14 EELTLTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPK------RQKLLYPKIGN-KL-AD--DTVLLSQLPLKSSL 82 (332)
Q Consensus 14 ~~i~i~vk~~g~~~-~i~v~~~~tV~~LK~~I~~~tgvp~~------~QkLl~~k~~g-k~-l~--d~~~L~~~~i~~g~ 82 (332)
..+-..|-....+| ++.+.-+.|+.+++..+.++.+..-+ .++|.-.|..| |. ++ |......+++ +.
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--Ng 85 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NS 85 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cc
Confidence 35556666666666 48999999999999999999987654 78887655433 32 22 3344555554 46
Q ss_pred eEEEEec
Q 042485 83 KMTMIGT 89 (332)
Q Consensus 83 ~l~l~gs 89 (332)
.|.+--.
T Consensus 86 RLfvc~k 92 (120)
T 2dhz_A 86 HLFACTR 92 (120)
T ss_dssp EEEEECT
T ss_pred eEEEeeh
Confidence 7776543
No 348
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=28.14 E-value=1.9e+02 Score=21.77 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=47.1
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC--CceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPK--RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~--~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
..=.++|.-.......-|.. .+..+|+.+.....+++.. .-.|. +.-.|..++|+.-+..+. ++..+|++...+
T Consensus 17 ~~kPfkV~~~~~r~k~GV~A-~SL~EL~~K~~~~l~l~~~~~~~~lv-LeeDGT~VddEeYF~tLp--~nT~lmvL~~ge 92 (100)
T 1f2r_I 17 PLKPCLLRRNHSRDQHGVAA-SSLEELRSKACELLAIDKSLTPITLV-LAEDGTIVDDDDYFLCLP--SNTKFVALACNE 92 (100)
T ss_dssp CCEEEEEEETTEEEEEEEEE-SSHHHHHHHHHHHHCCCGGGCSCEEE-ESSSCCBCCSSSSSSSSC--SCCEEEEECSSS
T ss_pred CCCCEEEeeCCCccEEeEEc-CCHHHHHHHHHHHhccCCCCCceEEE-EeeCCcEEechhHhhcCC--CCCEEEEEcCCC
Confidence 34455565222222444422 4899999999999999864 23443 322688888888877774 777777775544
No 349
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=28.02 E-value=1.1e+02 Score=24.75 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHhCCCCC--CceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 35 DSVAELKRRICELTNVLPK--RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~--~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
.+..+|+.+.....+++.. .-.|. +.-.|-.++|+.-+..+. ++..+|++...+.
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~Lv-LeeDGTeVddEeYF~tLp--~nT~LmvL~~gek 138 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLV-LAEDGTIVDDDDYFLCLP--SNTKFVALASNEK 138 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEE-ETTTCCBCSSHHHHHHSC--SSCBEEEECSSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEE-EeeCCcEEechhHhhcCC--CCCEEEEECCCCc
Confidence 6799999999999999763 55554 432788888888877774 7778887765543
No 350
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=27.14 E-value=88 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.0
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHH
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELK 41 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK 41 (332)
|..+|++...|..++++++++.|+.+.-
T Consensus 1 m~~~v~~~~~~~~~~~~~~~g~tlL~a~ 28 (98)
T 1iue_A 1 AFYNITLRTNDGEKKIECNEDEYILDAS 28 (98)
T ss_dssp CEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred CcEEEEEEeCCCeEEEEeCCCCcHHHHH
Confidence 4567888877767889999999998753
No 351
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=26.71 E-value=1e+02 Score=30.90 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=50.8
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.+...+.+..|++++-.-. ..-..||+..+.++.|++ ++++++-|.-....+..+.+++|+.
T Consensus 435 ~g~~~l~va~~~~~~G~i~----~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~ 497 (645)
T 3j08_A 435 EAKTAVIVARNGRVEGIIA----VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD 497 (645)
T ss_dssp TTCCCEEEEETTEEEEEEE----EECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS
T ss_pred cCCeEEEEEECCEEEEEEE----ecCCchhHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 4667788888888774321 223589999999999998 7999999999999999999999884
No 352
>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*
Probab=26.28 E-value=67 Score=31.88 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=36.8
Q ss_pred CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh-CC
Q 042485 168 PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL-GV 209 (332)
Q Consensus 168 ~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l-~~ 209 (332)
.++..-|.+..+|+.+.+ + .+.|-|++...|++.+|+.+ |.
T Consensus 243 kYv~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~yv~~~m~yllg~ 285 (555)
T 2jc9_A 243 KYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDKIMTYLFDF 285 (555)
T ss_dssp HHBCCCTHHHHHHHHHHHHS-EEEEECSSCHHHHHHHHHHHTCS
T ss_pred HhcCCChHHHHHHHHHHHcC-CEEEEeCCChHHHHHHHHHhcCC
Confidence 367788999999999998 7 99999999999999999988 63
No 353
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=26.22 E-value=1.1e+02 Score=31.23 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=52.0
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|...+.+..|++++-.-. ..-..||+..+.++.|.+ ++++++-|--....+..+.+++|+.
T Consensus 532 ~G~~vl~va~d~~~~G~i~----i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~ 594 (736)
T 3rfu_A 532 KGASVMFMAVDGKTVALLV----VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK 594 (736)
T ss_dssp TTCEEEEEEETTEEEEEEE----EECCBCSSHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCC
T ss_pred cCCeEEEEEECCEEEEEEE----eeccchhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 4777888899998874321 223589999999999998 8999999999999999999999884
No 354
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=25.47 E-value=71 Score=25.18 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=41.5
Q ss_pred ceEEEEEE-eCCeE------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WSGKE------YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~~------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|-|.|. ..+.. -..-|+.+.||++|...|....+++|+.--.++. ++.+..-+.+++++
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V--nn~lPs~s~~m~~l 102 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV--NNVIPPTSATMGSL 102 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB--TTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE--CCccCCccchHHHH
Confidence 35666666 33221 2246899999999999999999999987665654 34455555666654
No 355
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=24.52 E-value=66 Score=25.11 Aligned_cols=61 Identities=8% Similarity=0.188 Sum_probs=41.7
Q ss_pred ceEEEEEE-eCCeE------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WSGKE------YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~~------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|-|.|. +.+.. -..-|+.+.||++|...|....+++++.--.++. ++.+..-+.+++++
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V--n~~~p~~~~~m~~l 97 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT--NDTVLPSSAQMADI 97 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE--TTEECCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE--CCcCCCccchHHHH
Confidence 35667776 33322 2246899999999999999999999987655654 44555555666554
No 356
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=24.48 E-value=92 Score=24.31 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCCCCCceEEEEEE-eCCeEEEEEecCCCCHHHH
Q 042485 8 STASSSEELTLTVK-WSGKEYTVRVCGDDSVAEL 40 (332)
Q Consensus 8 ~~~~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~L 40 (332)
..+....|.+|++. ..|+..+|++.+..|+.+.
T Consensus 14 ~~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 14 LVPRGSHMAKINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp -CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred ccCCCCCceEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 34556778899998 7788889999999999874
No 357
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=24.31 E-value=75 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.3
Q ss_pred CceEEEEEE-eCCeEEEEEecCCCCHHHH
Q 042485 13 SEELTLTVK-WSGKEYTVRVCGDDSVAEL 40 (332)
Q Consensus 13 ~~~i~i~vk-~~g~~~~i~v~~~~tV~~L 40 (332)
..+++|++. ..|+.++|++.+..|+.+.
T Consensus 4 ~~m~~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 4 GDKITVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred CceEEEEEECCCCCEEEEEECCCChHHHH
Confidence 446788888 5788899999999999764
No 358
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=24.03 E-value=2.1e+02 Score=20.86 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=24.1
Q ss_pred eEEEEEEeCCeEEEEEe-cCCCCHHHHHHHH
Q 042485 15 ELTLTVKWSGKEYTVRV-CGDDSVAELKRRI 44 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v-~~~~tV~~LK~~I 44 (332)
.|+|+|..++..+.|.. +...||.+|-++-
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A 32 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQA 32 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHH
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHH
Confidence 46899999999999987 5677999885543
No 359
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=23.52 E-value=2.1e+02 Score=20.72 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=50.2
Q ss_pred eEEEEEEeC---CeEEE-EEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 15 ELTLTVKWS---GKEYT-VRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk~~---g~~~~-i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.+++.|... +..|. ++|++.+....+-.--+++.+||++.--++ .. .|--....++-...=+|-|+-+-|+
T Consensus 10 kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAii-T~-dGiGInP~QtAGnvFlKhGseLrlI 84 (92)
T 1j0g_A 10 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAII-TN-DGIGINPAQTAGNVFLKHGSELRII 84 (92)
T ss_dssp EEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEE-CT-TSCCCCCSSBHHHHHHHTCSEEEEE
T ss_pred eEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEE-ec-CCcccChhhccchhhhhcCceeEec
Confidence 466666643 34565 689999999998899999999999988777 44 4544444455555556777777766
No 360
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=23.37 E-value=89 Score=24.28 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=40.7
Q ss_pred ceEEEEEEeCCe-E------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVKWSGK-E------YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk~~g~-~------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|-|.|.-.++ . -..-|+.+.||++|...|....+++++.--.++. ++.+..-+.+++++
T Consensus 29 ~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V--n~~~p~~~~~m~~l 96 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV--NDTLPPTAALMSAI 96 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB--TTBCCCTTSBHHHH
T ss_pred CceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE--CCccCCccchHHHH
Confidence 356677763222 1 2345899999999999999999999876555554 34444445566553
No 361
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=23.28 E-value=1.2e+02 Score=22.11 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.2
Q ss_pred ceEEEEEEeCCeEEEEEecCCCCHHHHH
Q 042485 14 EELTLTVKWSGKEYTVRVCGDDSVAELK 41 (332)
Q Consensus 14 ~~i~i~vk~~g~~~~i~v~~~~tV~~LK 41 (332)
|..+|++...+..++++++++.|+.+.-
T Consensus 1 m~~~v~~~~~~~~~~~~~~~g~tlL~a~ 28 (97)
T 1a70_A 1 AAYKVTLVTPTGNVEFQCPDDVYILDAA 28 (97)
T ss_dssp CEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred CeEEEEEEeCCceEEEEeCCCCcHHHHH
Confidence 4467777766667889999999998753
No 362
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=23.25 E-value=1.6e+02 Score=23.21 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=41.9
Q ss_pred ceEEEEEE-eCCeE-------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEe-eccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WSGKE-------YTVRVCGDDSVAELKRRICELTNVLPKRQKLL-YPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~~-------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl-~~k~~gk~l~d~~~L~~~ 76 (332)
..|.|.|. +.+.. -..-|+.+.||++|...|....+++++.--.+ +. ++.+..-+.+++++
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~v--n~~~p~~~~~m~~l 103 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVN--GHSMVSVSTPISEV 103 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEET--TTEECCTTSBHHHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEE--CCccCCccchHHHH
Confidence 45777775 43322 23468999999999999999999999865545 53 33344445666664
No 363
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=22.92 E-value=85 Score=24.28 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=41.5
Q ss_pred ceEEEEEE-eCCe------EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WSGK------EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~------~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|.|.|. ..+. +-..-|+.+.||++|...|....+++++.--.++. ++.+..-+.+++++
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v--n~~~p~~~~~m~~L 94 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV--DKTVPQSSLTMGQL 94 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB--TTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE--CCEecCccchHHHH
Confidence 45677777 3332 12345788999999999999999999886555543 45455555666665
No 364
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=22.83 E-value=1.2e+02 Score=20.44 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=34.4
Q ss_pred EEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 18 LTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 18 i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
+.|.. .|+. .+++...|+.+|-+.|....+ ..-+. .+++|++.+-+ ..|++|+.|-++-.
T Consensus 3 i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~va-a~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 3 VMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIG-AKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp EEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEE-EEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred EEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEE-EEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 44554 4554 577788999999887732211 11222 22367655432 44567888877643
No 365
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.75 E-value=1.1e+02 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=32.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
.+|.+.|+..+|=.++|+.|+.+.||.+..-.-+..
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~ 129 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEc
Confidence 479999999999999999999999999988877653
No 366
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=21.69 E-value=1.6e+02 Score=29.98 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=51.4
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.+...+.+..|++++-.-. ..-..||+..+.++.|.+ ++++++-|.-....+..+.+++|+.
T Consensus 513 ~g~~~~~va~~~~~~G~i~----i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~ 575 (723)
T 3j09_A 513 EAKTAVIVARNGRVEGIIA----VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD 575 (723)
T ss_dssp TTCEEEEEEETTEEEEEEE----EECCSCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS
T ss_pred cCCeEEEEEECCEEEEEEe----ecCCcchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCc
Confidence 4677888888888874321 223589999999999998 7999999999999999999999884
No 367
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Probab=21.29 E-value=88 Score=28.01 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=14.2
Q ss_pred cceEEEecCCceEeccC
Q 042485 147 KKLLVLDIDYTLFDHRS 163 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~ 163 (332)
.++++|||||||+++..
T Consensus 21 ~kli~fDlDGTLld~~~ 37 (332)
T 1y8a_A 21 GHMFFTDWEGPWILTDF 37 (332)
T ss_dssp CCEEEECSBTTTBCCCH
T ss_pred ceEEEEECcCCCcCccH
Confidence 57899999999998753
No 368
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=21.00 E-value=1.2e+02 Score=27.80 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=32.9
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLP 52 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~ 52 (332)
.+.+.|.. .|....+.+++.+|+.++-+.|....|+..
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 46777884 677788999999999999999999999874
No 369
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.17 E-value=1.4e+02 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
..+|.+.|+..+|=.++|+.++.+.||.+..-.-+.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~ 122 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLN 122 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeE
Confidence 357999999999999999999999999998877664
Done!