Your job contains 1 sequence.
>042488
MSGEEEENAAELKIGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD
DEAIEKMLNDLSLIKKFE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042488
(78 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178158 - symbol:NRPB4 species:3702 "Arabidops... 280 1.1e-31 2
UNIPROTKB|Q1JQ91 - symbol:POLR2D "Polymerase (RNA) II (DN... 123 5.3e-10 2
FB|FBgn0263757 - symbol:Rpb4 species:7227 "Drosophila mel... 115 3.6e-09 2
UNIPROTKB|F1P2S1 - symbol:POLR2D "Uncharacterized protein... 126 3.3e-08 1
UNIPROTKB|E2RPH1 - symbol:POLR2D "Uncharacterized protein... 123 6.8e-08 1
UNIPROTKB|E9PB93 - symbol:POLR2D "DNA-directed RNA polyme... 123 6.8e-08 1
UNIPROTKB|O15514 - symbol:POLR2D "DNA-directed RNA polyme... 123 6.8e-08 1
MGI|MGI:1916491 - symbol:Polr2d "polymerase (RNA) II (DNA... 123 6.8e-08 1
RGD|1308565 - symbol:Polr2d "polymerase (RNA) II (DNA dir... 123 6.8e-08 1
DICTYBASE|DDB_G0282739 - symbol:rpb4 "DNA-directed RNA po... 120 1.4e-07 1
ZFIN|ZDB-GENE-040714-2 - symbol:polr2d "polymerase (RNA) ... 120 1.4e-07 1
WB|WBGene00018391 - symbol:rpb-4 species:6239 "Caenorhabd... 103 9.0e-06 1
POMBASE|SPBC337.14 - symbol:rpb4 "DNA-directed RNA polyme... 95 6.3e-05 1
SGD|S000003676 - symbol:RPB4 "RNA polymerase II subunit B... 90 0.00064 1
UNIPROTKB|G4MS77 - symbol:MGG_04508 "Uncharacterized prot... 85 0.00074 1
ASPGD|ASPL0000040846 - symbol:AN10362 species:162425 "Eme... 84 0.00097 1
>TAIR|locus:2178158 [details] [associations]
symbol:NRPB4 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0032774 "RNA biosynthetic process" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA;IPI]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA;TAS] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 EMBL:AB016893 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250
KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
HOGENOM:HOG000195281 EMBL:AF016511 EMBL:AY086086 EMBL:BT025500
EMBL:AK317113 IPI:IPI00529292 RefSeq:NP_196554.1 UniGene:At.6949
ProteinModelPortal:O48890 SMR:O48890 STRING:O48890 PaxDb:O48890
PRIDE:O48890 EnsemblPlants:AT5G09920.1 GeneID:830853
KEGG:ath:AT5G09920 TAIR:At5g09920 InParanoid:O48890
PhylomeDB:O48890 ProtClustDB:CLSN2687520 Genevestigator:O48890
Uniprot:O48890
Length = 138
Score = 280 (103.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 53/65 (81%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSR+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRAHDDEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
+K+FE
Sbjct: 134 VKRFE 138
Score = 83 (34.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 1 MSGEEEENAAELKIGDVF 18
MSGEEEENAAELKIGD F
Sbjct: 1 MSGEEEENAAELKIGDEF 18
>UNIPROTKB|Q1JQ91 [details] [associations]
symbol:POLR2D "Polymerase (RNA) II (DNA directed)
polypeptide D" species:9913 "Bos taurus" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 GO:GO:0004672
GO:GO:0006366 SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665
eggNOG:COG5250 KO:K03012 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
HOGENOM:HOG000195281 HOVERGEN:HBG002800 OrthoDB:EOG444KMN
EMBL:DAAA02003881 EMBL:BC116155 IPI:IPI00692541
RefSeq:NP_001069926.1 UniGene:Bt.4253 SMR:Q1JQ91 STRING:Q1JQ91
Ensembl:ENSBTAT00000013496 GeneID:617422 KEGG:bta:617422
InParanoid:Q1JQ91 NextBio:20900656 Uniprot:Q1JQ91
Length = 142
Score = 123 (48.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
Score = 32 (16.3 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 2 SGEEEENAAEL 12
SG+ EE+A++L
Sbjct: 10 SGDVEEDASQL 20
>FB|FBgn0263757 [details] [associations]
symbol:Rpb4 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IDA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=ISS] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IDA] [GO:0043966 "histone H3 acetylation" evidence=IDA]
[GO:0043967 "histone H4 acetylation" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005671 "Ada2/Gcn5/Ada3
transcription activator complex" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
EMBL:AE014297 GO:GO:0007095 GO:GO:0022008 GO:GO:0000166
GO:GO:0008283 GO:GO:0003682 GO:GO:0006366 GO:GO:0043967
eggNOG:COG5114 GO:GO:0005671 GO:GO:0005700 SUPFAM:SSF47819
GO:GO:0043966 GO:GO:0003899 GO:GO:0005665 HSSP:O15514 KO:K03012
InterPro:IPR006590 SMART:SM00657 EMBL:AF544019 EMBL:AF544020
EMBL:BT022168 EMBL:BT023308 EMBL:BT023309 RefSeq:NP_001014633.2
UniGene:Dm.13710 ProteinModelPortal:Q9VEA5 SMR:Q9VEA5 IntAct:Q9VEA5
MINT:MINT-764159 STRING:Q9VEA5 PRIDE:Q9VEA5
EnsemblMetazoa:FBtr0310379 GeneID:326128 KEGG:dme:Dmel_CG33520
UCSC:CG33520-RA CTD:326128 FlyBase:FBgn0263757
GeneTree:ENSGT00390000004912 InParanoid:Q9VEA5 OMA:SQLVFPK
OrthoDB:EOG4FXPPS GenomeRNAi:326128 NextBio:847197 Bgee:Q9VEA5
Uniprot:Q9VEA5
Length = 139
Score = 115 (45.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+L + +L +FEL LGNLCPE EEA A++PS++ GR D+E + ++L+D+
Sbjct: 83 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE--GRFEDEE-LRQILDDI 131
Score = 32 (16.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 4 EEEENAAELKIGDVFRIL 21
+E ENA L I +V +L
Sbjct: 21 KEFENAETLLISEVHMLL 38
>UNIPROTKB|F1P2S1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK EMBL:AADN02024422
IPI:IPI00592989 Ensembl:ENSGALT00000003200 Uniprot:F1P2S1
Length = 147
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ GR D+E ++++L+D+
Sbjct: 85 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLE--GRFEDEE-LQQILDDIQT 141
Query: 74 IKKFE 78
+ F+
Sbjct: 142 KRSFQ 146
>UNIPROTKB|E2RPH1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 KO:K03012 InterPro:IPR006590
SMART:SM00657 GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
EMBL:AAEX03011834 RefSeq:XP_540983.2 ProteinModelPortal:E2RPH1
Ensembl:ENSCAFT00000006918 GeneID:483863 KEGG:cfa:483863
Uniprot:E2RPH1
Length = 142
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>UNIPROTKB|E9PB93 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 HGNC:HGNC:9191 ChiTaRS:POLR2D
EMBL:AC006011 EMBL:AC012306 IPI:IPI00915935
ProteinModelPortal:E9PB93 SMR:E9PB93 PRIDE:E9PB93
Ensembl:ENST00000409698 ArrayExpress:E9PB93 Bgee:E9PB93
Uniprot:E9PB93
Length = 104
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 42 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 98
Query: 74 IKKFE 78
+ F+
Sbjct: 99 KRSFQ 103
>UNIPROTKB|O15514 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IMP] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0000166 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 SUPFAM:SSF47819
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK EMBL:U89387
EMBL:U85510 EMBL:BC017205 EMBL:BC093795 EMBL:BC093797
IPI:IPI00007283 RefSeq:NP_004796.1 UniGene:Hs.715348 PDB:2C35
PDBsum:2C35 ProteinModelPortal:O15514 SMR:O15514 DIP:DIP-32912N
IntAct:O15514 STRING:O15514 PhosphoSite:O15514 PaxDb:O15514
PeptideAtlas:O15514 PRIDE:O15514 DNASU:5433 Ensembl:ENST00000272645
GeneID:5433 KEGG:hsa:5433 UCSC:uc002tpj.3 CTD:5433
GeneCards:GC02M128620 HGNC:HGNC:9191 HPA:HPA046092 MIM:606017
neXtProt:NX_O15514 PharmGKB:PA33511 HOGENOM:HOG000195281
HOVERGEN:HBG002800 InParanoid:O15514 OrthoDB:EOG444KMN
PhylomeDB:O15514 ChiTaRS:POLR2D EvolutionaryTrace:O15514
GenomeRNAi:5433 NextBio:21021 ArrayExpress:O15514 Bgee:O15514
CleanEx:HS_POLR2D Genevestigator:O15514 GermOnline:ENSG00000144231
Uniprot:O15514
Length = 142
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>MGI|MGI:1916491 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0044237 "cellular metabolic process" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 MGI:MGI:1916491
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 HOGENOM:HOG000195281 HOVERGEN:HBG002800
OrthoDB:EOG444KMN EMBL:AK011600 EMBL:BC004810 IPI:IPI00268215
RefSeq:NP_081278.1 RefSeq:NP_081377.1 UniGene:Mm.279898
ProteinModelPortal:Q9D7M8 SMR:Q9D7M8 STRING:Q9D7M8
PhosphoSite:Q9D7M8 REPRODUCTION-2DPAGE:Q9D7M8 PaxDb:Q9D7M8
PRIDE:Q9D7M8 Ensembl:ENSMUST00000025106 GeneID:69241 KEGG:mmu:69241
UCSC:uc008eim.1 InParanoid:Q9D7M8 NextBio:328957 Bgee:Q9D7M8
CleanEx:MM_POLR2D Genevestigator:Q9D7M8
GermOnline:ENSMUSG00000024258 Uniprot:Q9D7M8
Length = 142
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>RGD|1308565 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed) polypeptide D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
RGD:1308565 GO:GO:0000166 GO:GO:0004672 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 EMBL:CH473974 GO:GO:0005665 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 OrthoDB:EOG444KMN IPI:IPI00360244
RefSeq:NP_001102356.1 UniGene:Rn.128728 SMR:D4A259
Ensembl:ENSRNOT00000021738 GeneID:364834 KEGG:rno:364834
UCSC:RGD:1308565 NextBio:686138 Uniprot:D4A259
Length = 142
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ GR D+E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE--GRFEDEE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>DICTYBASE|DDB_G0282739 [details] [associations]
symbol:rpb4 "DNA-directed RNA polymerase II subunit
4" species:44689 "Dictyostelium discoideum" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;IGI;ISS] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 dictyBase:DDB_G0282739
GO:GO:0005737 GO:GO:0000166 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 RefSeq:XP_640235.1 HSSP:O15514
ProteinModelPortal:Q54S04 STRING:Q54S04 EnsemblProtists:DDB0216294
GeneID:8623774 KEGG:ddi:DDB_G0282739 eggNOG:COG5250 KO:K03012
OMA:LCPETAD InterPro:IPR006590 SMART:SM00657 Uniprot:Q54S04
Length = 155
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V LS+ L EFE+ L NLCPE +EA +++PS+K + DDE ++ +L++LS
Sbjct: 95 IKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK---KMEDDE-LQAILDELSN 150
Query: 74 IKKF 77
++KF
Sbjct: 151 LRKF 154
>ZFIN|ZDB-GENE-040714-2 [details] [associations]
symbol:polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
ZFIN:ZDB-GENE-040714-2 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 EMBL:CU638696 IPI:IPI00498358
Ensembl:ENSDART00000108718 Bgee:F1RDX0 Uniprot:F1RDX0
Length = 145
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ GR D+E ++++L+D+
Sbjct: 83 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE--GRFEDEE-LQQILDDIQT 139
Query: 74 IKKFE 78
+ F+
Sbjct: 140 KRSFQ 144
>WB|WBGene00018391 [details] [associations]
symbol:rpb-4 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0009792 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 EMBL:FO080417 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK HOGENOM:HOG000195281 RefSeq:NP_495544.2
ProteinModelPortal:O02092 SMR:O02092 STRING:O02092 MEROPS:S16.A05
PaxDb:O02092 EnsemblMetazoa:F43E2.2 GeneID:174208
KEGG:cel:CELE_F43E2.2 UCSC:F43E2.2 CTD:174208 WormBase:F43E2.2
InParanoid:O02092 NextBio:883013 Uniprot:O02092
Length = 144
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
I S L +FE+ + NLCPE EEA A+VPS++ + ++ +E++L DL + F+
Sbjct: 89 IFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENK---IEESELEEVLKDLQSKRTFQ 144
>POMBASE|SPBC337.14 [details] [associations]
symbol:rpb4 "DNA-directed RNA polymerase II complex
subunit Rpb4" species:4896 "Schizosaccharomyces pombe" [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=TAS] [GO:1900405 "regulation of cytokinetic
cell separation by regulation of transcription from RNA polymerase
II promoter" evidence=IMP] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] InterPro:IPR005574 InterPro:IPR010997
Pfam:PF03874 PomBase:SPBC337.14 GO:GO:0000166 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006366 GO:GO:1900405 GO:GO:0016591
SUPFAM:SSF47819 GO:GO:0003899 PDB:3H0G PDBsum:3H0G eggNOG:COG5250
KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
HOGENOM:HOG000195281 EMBL:AB019575 EMBL:AF149308 PIR:T40267
RefSeq:NP_595415.1 ProteinModelPortal:O74825 IntAct:O74825
MINT:MINT-4681017 STRING:O74825 PRIDE:O74825
EnsemblFungi:SPBC337.14.1 GeneID:2541011 KEGG:spo:SPBC337.14
OrthoDB:EOG4ZGSNW EvolutionaryTrace:O74825 NextBio:20802125
Uniprot:O74825
Length = 135
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 19 RILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
RIL + +FE LG LC E EEA ++PS+ + DD+ ++ +L++LS ++KF+
Sbjct: 79 RILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK---IDDQNLQGILDELSTLRKFQ 134
>SGD|S000003676 [details] [associations]
symbol:RPB4 "RNA polymerase II subunit B32" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=IMP] [GO:0031369 "translation initiation factor binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0034402
"recruitment of 3'-end processing factors to RNA polymerase II
holoenzyme complex" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IDA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0031990 "mRNA export from nucleus in response to heat stress"
evidence=IMP] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 SGD:S000003676
EMBL:BK006943 GO:GO:0000166 GO:GO:0006281 GO:GO:0000932 EMBL:X87371
GO:GO:0006367 GO:GO:0031990 GO:GO:0000288 SUPFAM:SSF47819
GO:GO:0045948 GO:GO:0034402 GO:GO:0003899 EMBL:X58099 GO:GO:0005665
PDB:1NT9 PDB:1PQV PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77
PDB:2B63 PDB:2B8K PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E
PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M
PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS eggNOG:COG5250 KO:K03012 InterPro:IPR006590
SMART:SM00657 GeneTree:ENSGT00390000004912 HOGENOM:HOG000195281
OrthoDB:EOG4ZGSNW EMBL:M27253 EMBL:Z49415 EMBL:AY557856 PIR:A32490
RefSeq:NP_012395.1 PDB:1Y14 PDBsum:1Y14 ProteinModelPortal:P20433
SMR:P20433 DIP:DIP-55N IntAct:P20433 MINT:MINT-538215 STRING:P20433
PaxDb:P20433 PeptideAtlas:P20433 EnsemblFungi:YJL140W GeneID:853301
KEGG:sce:YJL140W CYGD:YJL140w OMA:GTLECED EvolutionaryTrace:P20433
NextBio:973621 Genevestigator:P20433 GermOnline:YJL140W
Uniprot:P20433
Length = 221
Score = 90 (36.7 bits), Expect = 0.00064, P = 0.00064
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNK--ISDDE-LERILKELS 215
>UNIPROTKB|G4MS77 [details] [associations]
symbol:MGG_04508 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 EMBL:CM001231 SUPFAM:SSF47819
GO:GO:0003899 KO:K03012 InterPro:IPR006590 SMART:SM00657
RefSeq:XP_003710947.1 ProteinModelPortal:G4MS77
EnsemblFungi:MGG_04508T0 GeneID:2678078 KEGG:mgr:MGG_04508
Uniprot:G4MS77
Length = 150
Score = 85 (35.0 bits), Expect = 0.00074, P = 0.00074
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 19 RILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
R+LS R +L +FE + +L PE +EA ++PS+K + DD +E +L +LS
Sbjct: 95 RLLSARPELHKFERAQIASLVPENSDEAKKLIPSLKDK---FDDHDLEDLLQELS 146
>ASPGD|ASPL0000040846 [details] [associations]
symbol:AN10362 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:1900405 "regulation of cytokinetic cell
separation by regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 EMBL:BN001306
GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899 InterPro:IPR006590
SMART:SM00657 HOGENOM:HOG000195281 EnsemblFungi:CADANIAT00010142
OMA:QLGSLCC Uniprot:C8VJ36
Length = 149
Score = 84 (34.6 bits), Expect = 0.00097, P = 0.00097
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 11 ELKIGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLN 69
E I V R+L+ + +L FE LG+LC + +EA +++PS++ + D E ++++L+
Sbjct: 83 EENIKAVERLLNSHTELEMFERSQLGSLCCDNADEAKSLIPSLQNK--ISDGE-LQELLD 139
Query: 70 DLSLIKKF 77
+L+ ++ F
Sbjct: 140 ELTKLRNF 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 78 78 0.00091 102 3 11 22 0.41 29
29 0.38 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 463 (49 KB)
Total size of DFA: 83 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.54u 0.12s 8.66t Elapsed: 00:00:00
Total cpu time: 8.54u 0.12s 8.66t Elapsed: 00:00:00
Start: Fri May 10 10:23:02 2013 End: Fri May 10 10:23:02 2013