BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042488
(78 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHDDEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHDDEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA DDEAIEKMLNDLSL
Sbjct: 50 VRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSL 109
Query: 74 IKKFE 78
IKKFE
Sbjct: 110 IKKFE 114
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA DDEAIEKMLNDLSL
Sbjct: 74 VRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA DDEAIEKMLNDLSL
Sbjct: 74 VRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAHDDEAIEKML DLS+
Sbjct: 74 VRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLTDLSM 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA DDEAIEKMLNDLSL
Sbjct: 74 VRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V +LSRYQLAEFELCVLGNLCPETVEEAIAMVPS+KT+GR HDDEAIEKMLNDLSL
Sbjct: 74 VRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IK+FE
Sbjct: 134 IKRFE 138
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V +LSR+QLAEFELCVLGNLCPETVEEAIAMVPSIK+RGR HDDEAIEKMLND+SL
Sbjct: 74 VRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRGHDDEAIEKMLNDMSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RYQLAEFELCVLGNLCPETVEEAIA+VPSIK+RGRA DDEAIEKMLNDLSL
Sbjct: 74 VRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIKSRGRAQDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSR+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRAHDDEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
+K+FE
Sbjct: 134 VKRFE 138
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSR+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRAHDDEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
+K+FE
Sbjct: 134 VKRFE 138
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRY+LAEFELCVLGNLCPETVEEAIAMVPSIK++GR H+D+AIEKMLNDLSL
Sbjct: 74 VRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIHEDDAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRYQLAEFELCVLGNLCPETVEEA ++VPS+KT+GR H+DEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSL 133
Query: 74 IKKFE 78
IKKFE
Sbjct: 134 IKKFE 138
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/60 (90%), Positives = 58/60 (96%)
Query: 19 RILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+IL+RYQLAEFELCVLGNLC ETVEEAIAMVPSI++RGRA DDEAIEKMLNDLSLIKKFE
Sbjct: 77 KILARYQLAEFELCVLGNLCLETVEEAIAMVPSIESRGRAQDDEAIEKMLNDLSLIKKFE 136
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 57/62 (91%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V IL+RY+LAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA DDEAIEKMLNDLSL
Sbjct: 74 VRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLSL 133
Query: 74 IK 75
IK
Sbjct: 134 IK 135
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V ILSRYQLAEFELCVLGNLCPETVEEA ++VPS+KT+GR H+DEAIEKMLNDLSL
Sbjct: 74 VRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSL 133
Query: 74 IKKF 77
IK
Sbjct: 134 IKSL 137
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V +LSR QLAEFE+CVLGNLCPETVEEA A+VPSI +GR DDE IE+ML DL+
Sbjct: 73 VQQVREVLSRNQLAEFEVCVLGNLCPETVEEATALVPSIAKKGRL-DDERIEQMLADLAR 131
Query: 74 IKKFE 78
IK FE
Sbjct: 132 IKTFE 136
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR---AHDDEAIEKMLND 70
+ V LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR DE IEKMLND
Sbjct: 76 VRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDAGDEKIEKMLND 135
Query: 71 LSLIKKFE 78
LSLIKKFE
Sbjct: 136 LSLIKKFE 143
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR---AHDDEAIEKMLND 70
+ V LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR DE IEKMLND
Sbjct: 77 VRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDPGDEKIEKMLND 136
Query: 71 LSLIKKFE 78
LSLIKKFE
Sbjct: 137 LSLIKKFE 144
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR---AHDDEAIEKMLND 70
+ V LSRY LAEFELC LGNLCP+T EA A+VPS+K+ GR DE IEKMLND
Sbjct: 76 VRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRFVGDARDEKIEKMLND 135
Query: 71 LSLIKKFE 78
LSLIKKFE
Sbjct: 136 LSLIKKFE 143
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V +L+R QL EFE+CV+GNLCPETVEEA A+VPSI RGR D+E IE ML DL+
Sbjct: 79 VKQVREVLTRNQLHEFEVCVIGNLCPETVEEAKALVPSITKRGRM-DEEKIETMLTDLAT 137
Query: 74 IKKFE 78
IKKFE
Sbjct: 138 IKKFE 142
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V LSRY L EFELC LGNLCP+T +EA A+VPS+ GR DE I+KMLNDLSL
Sbjct: 77 VRQVRETLSRYGLHEFELCTLGNLCPDTADEAKALVPSLVPGGRFDVDERIDKMLNDLSL 136
Query: 74 IKKFE 78
IKKFE
Sbjct: 137 IKKFE 141
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDD---EAIEKMLND 70
+ V LSRY LAEFELC LGNLCP+T +EA A+VPS+++ GR D E I+KMLND
Sbjct: 75 VRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRFVGDPGSEKIDKMLND 134
Query: 71 LSLIKKFE 78
LSLIKKFE
Sbjct: 135 LSLIKKFE 142
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRG 56
+ V ILSR+QL EFELCVLGNLCPETVEEA+AMVPS+K R
Sbjct: 221 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKWRS 263
>gi|440804477|gb|ELR25354.1| DNAdirected RNA polymerase II subunit rpb4, putative [Acanthamoeba
castellanii str. Neff]
Length = 135
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ +V +L+ +L EFE+ L NLCPET EEA +++PS+ R DDE ++ +LNDL+
Sbjct: 74 VKEVRSLLTEKELEEFEIAALSNLCPETAEEAKSLIPSLAKR---FDDEELQSVLNDLAS 130
Query: 74 IKKFE 78
++FE
Sbjct: 131 FRRFE 135
>gi|391330614|ref|XP_003739752.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Metaseiulus occidentalis]
Length = 144
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
IG+V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + ++L+D+
Sbjct: 82 IGEVRNLLQQKKLHKFELAQLANLCPETPEEAKALIPSLEGR---FEDEDLREVLDDIQT 138
Query: 74 IKKFE 78
K F+
Sbjct: 139 QKSFQ 143
>gi|443714916|gb|ELU07114.1| hypothetical protein CAPTEDRAFT_220021 [Capitella teleta]
Length = 139
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DEA++++L+D+
Sbjct: 77 IASVRSLLMQKKLHKFELAALANLCPETAEEAKALIPSLEGR---FEDEALQQILDDI 131
>gi|72150941|ref|XP_795859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Strongylocentrotus purpuratus]
Length = 142
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 14 IGDVFRILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLN 69
IGDV +L + Q L +FEL +L NLCPET EEA A++PS++ GR DDE E + N
Sbjct: 78 IGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLE--GRFEDDELTEVLEN 133
>gi|225716064|gb|ACO13878.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
IG V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 81 IGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 137
Query: 74 IKKFE 78
+ F+
Sbjct: 138 KRSFQ 142
>gi|449272625|gb|EMC82454.1| DNA-directed RNA polymerase II subunit RPB4, partial [Columba
livia]
Length = 118
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A+VPS++ R +DE ++++L+D+
Sbjct: 56 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALVPSLEGR---FEDEELQQILDDIQT 112
Query: 74 IKKFE 78
+ F+
Sbjct: 113 KRSFQ 117
>gi|225716192|gb|ACO13942.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
IG V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 81 IGSVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 137
Query: 74 IKKFE 78
+ F+
Sbjct: 138 KRSFQ 142
>gi|197129913|gb|ACH46411.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|390370008|ref|XP_003731750.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Strongylocentrotus purpuratus]
Length = 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 14 IGDVFRILSRYQ--LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
IGDV +L + Q L +FEL +L NLCPET EEA A++PS++ GR DDE E +L ++
Sbjct: 31 IGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLE--GRFEDDELTE-VLENM 87
Query: 72 SLIKKFE 78
+ F+
Sbjct: 88 QTKRSFQ 94
>gi|126325917|ref|XP_001366384.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|350538413|ref|NP_001232096.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|118094833|ref|XP_422576.2| PREDICTED: uncharacterized protein LOC424754 [Gallus gallus]
gi|326925590|ref|XP_003208995.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Meleagris gallopavo]
gi|197127794|gb|ACH44292.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127795|gb|ACH44293.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127796|gb|ACH44294.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|395519329|ref|XP_003763803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Sarcophilus
harrisii]
Length = 142
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|197127797|gb|ACH44295.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|327267294|ref|XP_003218437.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Anolis
carolinensis]
Length = 142
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|345315614|ref|XP_001517684.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ornithorhynchus anatinus]
Length = 104
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE ++++L+D+
Sbjct: 42 IASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 98
Query: 74 IKKFE 78
+ F+
Sbjct: 99 KRSFQ 103
>gi|330790380|ref|XP_003283275.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325086822|gb|EGC40206.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 138
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V LS+ L EF++ L NLCPET +EA +++PS+K D++A++ +L++LS
Sbjct: 78 IKQVRAALSKQNLEEFQIASLANLCPETADEAKSLIPSLK----EMDEDALQAILDELSN 133
Query: 74 IKKF 77
++KF
Sbjct: 134 LRKF 137
>gi|83754528|pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754530|pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754532|pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754534|pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 90 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 146
Query: 74 IKKFE 78
+ F+
Sbjct: 147 KRSFQ 151
>gi|328772120|gb|EGF82159.1| hypothetical protein BATDEDRAFT_86911 [Batrachochytrium
dendrobatidis JAM81]
Length = 138
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
Q +FE+ L NLC ET EEA ++PS+ T+ HDDE ++ +LNDL ++KF+
Sbjct: 89 QFHQFEMAQLANLCCETAEEAKVLIPSLSTK---HDDE-LQNLLNDLQALRKFQ 138
>gi|344290054|ref|XP_003416754.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Loxodonta africana]
Length = 142
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|310756788|gb|ADP20535.1| DNA-directed RNA polymerase II subunit RPB4 [Fukomys anselli]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|395855890|ref|XP_003800379.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Otolemur
garnettii]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|392306987|ref|NP_001254716.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|402892232|ref|XP_003909323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Papio
anubis]
gi|355566071|gb|EHH22500.1| hypothetical protein EGK_05780 [Macaca mulatta]
gi|355751666|gb|EHH55921.1| hypothetical protein EGM_05224 [Macaca fascicularis]
gi|380808166|gb|AFE75958.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|383410355|gb|AFH28391.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|384943808|gb|AFI35509.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|115497864|ref|NP_001069926.1| DNA-directed RNA polymerase II subunit RPB4 [Bos taurus]
gi|94574089|gb|AAI16156.1| Polymerase (RNA) II (DNA directed) polypeptide D [Bos taurus]
gi|296490760|tpg|DAA32873.1| TPA: RNA polymerase II polypeptide D [Bos taurus]
gi|440907193|gb|ELR57366.1| DNA-directed RNA polymerase II subunit RPB4 [Bos grunniens mutus]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|4758574|ref|NP_004796.1| DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
gi|21312246|ref|NP_081278.1| DNA-directed RNA polymerase II subunit RPB4 isoform 1 [Mus
musculus]
gi|157820569|ref|NP_001102356.1| DNA-directed RNA polymerase II subunit RPB4 [Rattus norvegicus]
gi|354459066|ref|NP_001238888.1| DNA-directed RNA polymerase II subunit RPB4 [Pan troglodytes]
gi|73984138|ref|XP_540983.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Canis lupus
familiaris]
gi|297668367|ref|XP_002812414.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pongo
abelii]
gi|301784665|ref|XP_002927746.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ailuropoda melanoleuca]
gi|332258210|ref|XP_003278192.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Nomascus
leucogenys]
gi|410968462|ref|XP_003990724.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Felis
catus]
gi|426337134|ref|XP_004032578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Gorilla
gorilla gorilla]
gi|3024558|sp|O15514.1|RPB4_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D; AltName:
Full=RNA polymerase II 16 kDa subunit; Short=RPB16
gi|50401678|sp|Q9D7M8.2|RPB4_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2253633|gb|AAC80226.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|2253635|gb|AAC52056.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|12847830|dbj|BAB27725.1| unnamed protein product [Mus musculus]
gi|16877972|gb|AAH17205.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739523|gb|AAH93795.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739756|gb|AAH93797.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|119615750|gb|EAW95344.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|119615751|gb|EAW95345.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|148664625|gb|EDK97041.1| polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|149017124|gb|EDL76175.1| polymerase (RNA) II (DNA directed) polypeptide D (predicted)
[Rattus norvegicus]
gi|208967080|dbj|BAG73554.1| polymerase (RNA) II (DNA directed) polypeptide D [synthetic
construct]
gi|281342733|gb|EFB18317.1| hypothetical protein PANDA_017559 [Ailuropoda melanoleuca]
gi|410214932|gb|JAA04685.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410259190|gb|JAA17561.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410287726|gb|JAA22463.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410350453|gb|JAA41830.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|444721464|gb|ELW62200.1| DNA-directed RNA polymerase II subunit RPB4 [Tupaia chinensis]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|426220671|ref|XP_004004537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Ovis aries]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|431907394|gb|ELK11340.1| DNA-directed RNA polymerase II subunit RPB4 [Pteropus alecto]
Length = 149
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 87 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 143
Query: 74 IKKFE 78
+ F+
Sbjct: 144 KRSFQ 148
>gi|310756790|gb|ADP20536.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
gi|351703153|gb|EHB06072.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|238231374|ref|NP_001154121.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
gi|225704188|gb|ACO07940.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
Length = 143
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 81 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR---FEDEELQQILDDIQT 137
Query: 74 IKKFE 78
+ F+
Sbjct: 138 KRSFQ 142
>gi|355712725|gb|AES04445.1| polymerase II polypeptide D [Mustela putorius furo]
Length = 117
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 56 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 112
Query: 74 IKKFE 78
+ F+
Sbjct: 113 KRSFQ 117
>gi|348586101|ref|XP_003478808.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cavia
porcellus]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|313219963|emb|CBY43664.1| unnamed protein product [Oikopleura dioica]
gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I +V +L+ +L FE+ L NLCPET +EA A++PS++ R DE +++ML+D++
Sbjct: 75 IVNVRTMLTSKRLHRFEIAALANLCPETADEAKALIPSMEGR---FPDEELQQMLDDMAT 131
Query: 74 IKKFE 78
+ F+
Sbjct: 132 QRSFQ 136
>gi|291387945|ref|XP_002710495.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 142
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|226443030|ref|NP_001140015.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
gi|221221172|gb|ACM09247.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
Length = 143
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 81 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR---FEDEELQQILDDIQT 137
Query: 74 IKKFE 78
+ F+
Sbjct: 138 KRSFQ 142
>gi|28076931|ref|NP_081377.1| DNA-directed RNA polymerase II subunit RPB4 isoform 2 [Mus
musculus]
gi|338715739|ref|XP_001499044.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Equus
caballus]
gi|13435942|gb|AAH04810.1| Polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|344254896|gb|EGW11000.1| DNA-directed RNA polymerase II subunit RPB4 [Cricetulus griseus]
gi|432115789|gb|ELK36944.1| DNA-directed RNA polymerase II subunit RPB4 [Myotis davidii]
Length = 104
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 42 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 98
Query: 74 IKKFE 78
+ F+
Sbjct: 99 KRSFQ 103
>gi|354497575|ref|XP_003510895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cricetulus griseus]
Length = 158
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 96 IASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQT 152
Query: 74 IKKFE 78
+ F+
Sbjct: 153 KRSFQ 157
>gi|226372342|gb|ACO51796.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L FEL L NLCPET +EA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|260841580|ref|XP_002613990.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
gi|229299380|gb|EEN69999.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE+ EEA +++PS++ R +DE ++++L+D+
Sbjct: 80 IAAVRSLLMQKKLHKFELAALANLCPESAEEAKSLIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|317593877|ref|NP_001187972.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
gi|308322187|gb|ADO28231.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus furcatus]
gi|308324485|gb|ADO29377.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
Length = 141
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 79 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 135
Query: 74 IKKFE 78
+ F+
Sbjct: 136 KRSFQ 140
>gi|410910710|ref|XP_003968833.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Takifugu rubripes]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ GR DDE ++++L+D+
Sbjct: 80 IAAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE--GRFEDDE-LQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|50539702|ref|NP_001002317.1| DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
gi|49619057|gb|AAT68113.1| RNA polymerase II subunit D [Danio rerio]
gi|66267586|gb|AAH95261.1| Polymerase (RNA) II (DNA directed) polypeptide D [Danio rerio]
gi|182888836|gb|AAI64278.1| Polr2d protein [Danio rerio]
Length = 141
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 79 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 135
Query: 74 IKKFE 78
+ F+
Sbjct: 136 KRSFQ 140
>gi|225706322|gb|ACO09007.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Osmerus mordax]
Length = 144
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 82 IASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 KRSFQ 143
>gi|126320947|ref|XP_001366375.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320951|ref|XP_001366486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320955|ref|XP_001366545.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320959|ref|XP_001366594.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRL---EDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|126320937|ref|XP_001366148.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LEDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|126320943|ref|XP_001366258.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LEDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|334349213|ref|XP_001369289.2| PREDICTED: hypothetical protein LOC100015134 [Monodelphis
domestica]
Length = 186
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 124 IASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGR---LEDEDLQEVLDDIQT 180
Query: 74 IKKFE 78
+ F+
Sbjct: 181 KRSFQ 185
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V L +Y + + E+CV+ N+CP+T +E A++PS+K R R+ E I +L++L+ +K
Sbjct: 161 VLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLSEPINNVLSELAKVK 218
>gi|198434387|ref|XP_002127588.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide D [Ciona intestinalis]
Length = 145
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + L +FEL L NLCPET EEA A+VPS++ R +DE ++++L D+
Sbjct: 83 ITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPSLEGR---FEDEDLQQVLEDIQT 139
Query: 74 IKKFE 78
+ F+
Sbjct: 140 KRSFQ 144
>gi|328855128|gb|EGG04256.1| hypothetical protein MELLADRAFT_89474 [Melampsora larici-populina
98AG31]
Length = 130
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 19 RILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+ILS+ Q L FEL L +LCPE EEA +++PS+ A DD+A++ +LN++S +K++
Sbjct: 73 QILSKDQTLKPFELAQLASLCPEEAEEAKSLIPSLA----AKDDDALQAILNEISGLKRY 128
Query: 78 E 78
+
Sbjct: 129 Q 129
>gi|126320933|ref|XP_001366024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320939|ref|XP_001366209.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320945|ref|XP_001366315.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IARVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAGRL---EDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|331212571|ref|XP_003307555.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297958|gb|EFP74549.1| DNA-directed RNA polymerase II subunit D [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 130
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 19 RILSR-YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+ILS+ L +FEL L +LCPE EEA +++PSI + DD+A++ +LN++S +K++
Sbjct: 73 QILSKDTTLKQFELAQLASLCPEEAEEAKSLIPSIAGK----DDDALQALLNEISGLKRY 128
Query: 78 E 78
+
Sbjct: 129 Q 129
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V L +Y + + E+CV+ N+CP+T +E A++PS+K R R+ E I +L++L+ +K
Sbjct: 161 VLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLSEPINNVLSELAKVK 218
>gi|196007958|ref|XP_002113845.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
gi|190584249|gb|EDV24319.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
Length = 106
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L+++ +FEL L NLCPET +EA +++PS+ + +DDE ++++L+D+
Sbjct: 44 IAAVRSLLNKHNFHKFELASLANLCPETSDEAKSLMPSLNGK---YDDEEMQQILDDI 98
>gi|225713530|gb|ACO12611.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290462181|gb|ADD24138.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290562964|gb|ADD38876.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
Length = 139
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I + +L++ +L +FEL L NLCP++ EEA +++PS++ R DDE + +L+D+
Sbjct: 77 IASIRSVLTQKKLHKFELAALANLCPDSPEEARSLIPSLEGR---FDDEELSVLLDDIQT 133
Query: 74 IKKFE 78
+ F+
Sbjct: 134 KRSFQ 138
>gi|347965542|ref|XP_003435782.1| AGAP001228-PB [Anopheles gambiae str. PEST]
gi|333470463|gb|EGK97631.1| AGAP001228-PB [Anopheles gambiae str. PEST]
Length = 139
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCP + EEA A++PS++ GR DDE ++++L+D+
Sbjct: 77 IASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE--GRFEDDE-LQQILDDI 131
>gi|350593475|ref|XP_003483693.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Sus
scrofa]
Length = 127
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 LKIGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
++ V +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+
Sbjct: 63 VQTAHVCSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDI 119
Query: 72 SLIKKFE 78
+ F+
Sbjct: 120 QTKRSFQ 126
>gi|346469951|gb|AEO34820.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V ++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ + ++L+D+
Sbjct: 82 ISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LRQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 QRSFQ 143
>gi|296204310|ref|XP_002749270.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Callithrix jacchus]
Length = 116
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 60 LLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 115
>gi|348540766|ref|XP_003457858.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oreochromis niloticus]
Length = 144
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A++PS++ R +DE ++++L+D+
Sbjct: 82 ITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR---FEDEELQQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 KRSFQ 143
>gi|346469949|gb|AEO34819.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V ++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ + ++L+D+
Sbjct: 82 ISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LRQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 QRSFQ 143
>gi|62858949|ref|NP_001016248.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189441952|gb|AAI67274.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189442580|gb|AAI67273.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
Length = 142
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L FEL L NLCPET +EA A++PS++ R ++E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEEEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|126320949|ref|XP_001366431.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FE+ L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IASVRGLLLQKKLHKFEVAALANLCPETAEEAKALIPSLAGRL---EDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|148233814|ref|NP_001087315.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus laevis]
gi|51873947|gb|AAH78547.1| MGC85403 protein [Xenopus laevis]
Length = 142
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L FEL L NLCPET +EA A++PS++ R ++E ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR---FEEEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|158302373|ref|XP_321930.4| AGAP001228-PA [Anopheles gambiae str. PEST]
gi|157012920|gb|EAA01792.4| AGAP001228-PA [Anopheles gambiae str. PEST]
Length = 161
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCP + EEA A++PS++ GR DDE ++++L+D+
Sbjct: 99 IASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE--GRFEDDE-LQQILDDI 153
>gi|427786429|gb|JAA58666.1| Putative dna-directed rna polymerase ii [Rhipicephalus pulchellus]
Length = 144
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V ++L++ +L FEL L NLCP+ EEA A+VPS++ GR DD+ + ++L+D+
Sbjct: 82 ITAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE--GRFEDDQ-LRQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 QRSFQ 143
>gi|432927321|ref|XP_004080968.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oryzias latipes]
Length = 144
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NLCPE EEA A+ PS++ R +DE ++++L+D+
Sbjct: 82 ITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALTPSLEGR---FEDEELQQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 KRSFQ 143
>gi|66812112|ref|XP_640235.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
gi|74854885|sp|Q54S04.1|RPB4_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|60468219|gb|EAL66229.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
Length = 155
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V LS+ L EFE+ L NLCPE +EA +++PS+K + DDE ++ +L++LS
Sbjct: 95 IKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK---KMEDDE-LQAILDELSN 150
Query: 74 IKKF 77
++KF
Sbjct: 151 LRKF 154
>gi|194900250|ref|XP_001979670.1| GG16596 [Drosophila erecta]
gi|195036818|ref|XP_001989865.1| GH19030 [Drosophila grimshawi]
gi|195110591|ref|XP_001999863.1| GI22842 [Drosophila mojavensis]
gi|195392503|ref|XP_002054897.1| GJ24701 [Drosophila virilis]
gi|195497583|ref|XP_002096162.1| GE25223 [Drosophila yakuba]
gi|190651373|gb|EDV48628.1| GG16596 [Drosophila erecta]
gi|193894061|gb|EDV92927.1| GH19030 [Drosophila grimshawi]
gi|193916457|gb|EDW15324.1| GI22842 [Drosophila mojavensis]
gi|194152983|gb|EDW68417.1| GJ24701 [Drosophila virilis]
gi|194182263|gb|EDW95874.1| GE25223 [Drosophila yakuba]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 42 IMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 96
>gi|170042819|ref|XP_001849109.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
gi|167866266|gb|EDS29649.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Culex
quinquefasciatus]
Length = 139
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 77 IASVRNLLMSKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 131
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
L + L E E+CV+ N+CPET +E A++PS+K++ R + + +E+ L++L+ K+
Sbjct: 145 LMNHDLTESEICVIANVCPETADEVFALLPSLKSK-RGINSQPVEEALSELAKFKQM 200
>gi|62420317|gb|AAX82034.1| unknown [Homo sapiens]
Length = 57
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+
Sbjct: 1 LLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 56
>gi|405964873|gb|EKC30315.1| DNA-directed RNA polymerase II subunit RPB4 [Crassostrea gigas]
Length = 145
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I + +L + +L +FEL L NLCP+ EEA +++PS++ R +DE ++++L D+
Sbjct: 83 ISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIPSLEGR---FEDEELQQLLEDIKT 139
Query: 74 IKKFE 78
+ F+
Sbjct: 140 KRSFQ 144
>gi|291226512|ref|XP_002733236.1| PREDICTED: DNA directed RNA polymerase II polypeptide D-like
[Saccoglossus kowalevskii]
Length = 141
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I +V +L + +L +FEL + NLCPE+ EEA A++PS++ R +DE ++++L+++
Sbjct: 79 ITEVRSLLMQKKLHKFELSSISNLCPESAEEAKALIPSLEGRF---EDEELQEILDNIQT 135
Query: 74 IKKFE 78
+ F+
Sbjct: 136 KRSFQ 140
>gi|226372134|gb|ACO51692.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L FEL L NLCP T +EA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHRFELACLANLCPGTADEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|328873268|gb|EGG21635.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium
fasciculatum]
Length = 138
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V LS+ L EFE+ L NLCPE +EA +++ S+K DD+ I+ +L++LS
Sbjct: 78 IKQVRAALSKQNLHEFEIASLANLCPENSDEAKSLIVSLKR----FDDDTIQAILDELSN 133
Query: 74 IKKF 77
++KF
Sbjct: 134 LRKF 137
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
L + L E E+CV+ N+CPET +E A++PS+K++ R + + +E+ L++L+ K+
Sbjct: 167 LMNHDLTESEICVIANVCPETADEVFALLPSLKSK-RGINSQPVEEALSELAKFKQM 222
>gi|387018222|gb|AFJ51229.1| DNA-directed RNA polymerase II subunit RPB4-like [Crotalus
adamanteus]
Length = 142
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FEL L NL PET EEA A++PS++ R +DE ++++L+D+
Sbjct: 80 IASVRSLLLQKKLHKFELACLANLGPETAEEAKALIPSLEGR---FEDEELQQILDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Query: 21 LSRYQL--AEFELCVLGNLCPETVEEAIAMVPSIKT 54
SRY+ A +LCVLGNLCPET EEA+AMVPS+K+
Sbjct: 77 FSRYKNPDAVRQLCVLGNLCPETAEEAVAMVPSLKS 112
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 1 MSGEEEENAAELKIGDVF 18
MSGEEEENAAELKIGD F
Sbjct: 1 MSGEEEENAAELKIGDEF 18
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 6 EENAAELKIGDVFRILSRYQ---LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 62
+ N+ L + + IL R + + E+CV+GN+CPET++E A++PS+K R R D +
Sbjct: 137 KSNSKYLDLQSIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFALLPSLKDR-RNIDSQ 195
Query: 63 AIEKMLNDLSLIKK 76
++ L++L+ ++
Sbjct: 196 VLKDSLSELAKFRQ 209
>gi|195152017|ref|XP_002016935.1| GL22027 [Drosophila persimilis]
gi|194111992|gb|EDW34035.1| GL22027 [Drosophila persimilis]
Length = 629
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 567 IMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 621
>gi|390178627|ref|XP_003736694.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
gi|388859523|gb|EIM52767.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
Length = 139
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 77 IMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 131
>gi|194764549|ref|XP_001964391.1| GF23150 [Drosophila ananassae]
gi|190614663|gb|EDV30187.1| GF23150 [Drosophila ananassae]
Length = 624
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 562 IMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 616
>gi|242009106|ref|XP_002425333.1| transcriptional adaptor, putative [Pediculus humanus corporis]
gi|212509118|gb|EEB12595.1| transcriptional adaptor, putative [Pediculus humanus corporis]
Length = 602
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + + L+D+
Sbjct: 540 ISSVRNLLMQKKLHKFELAALANLCPETPEEAKALIPSLEGR---FEDEELRQTLDDI 594
>gi|27263229|gb|AAN88031.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
gi|27263231|gb|AAN88032.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
Length = 139
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+L + +L +FEL LGNLCPE EEA A++PS++ GR D+EA E +L+D+
Sbjct: 83 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE--GRFEDEEARE-ILDDI 131
>gi|281202108|gb|EFA76313.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 747
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 7 ENAAELKIGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEK 66
+N A +K V +LS+ L EFE+ L NLCPE +EA +++ S+K R + D+ ++
Sbjct: 679 KNKASIK--QVRGVLSKQDLDEFEVACLANLCPENSDEAKSLIVSLK-RFQDTQDDTLQA 735
Query: 67 MLNDLSLIKKF 77
+L++LS ++KF
Sbjct: 736 ILDELSNLRKF 746
>gi|126320935|ref|XP_001366087.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +F L L NLCPET EEA A++PS+ R +DE ++++L+D+
Sbjct: 80 IASVRGLLLQKKLHKFVLAALANLCPETAEEAKALIPSLAGRL---EDEDLQEVLDDIQT 136
Query: 74 IKKFE 78
+ F+
Sbjct: 137 KRSFQ 141
>gi|91082085|ref|XP_966894.1| PREDICTED: similar to DNA-directed RNA polymerase II 16 kDa
polypeptide [Tribolium castaneum]
gi|270008323|gb|EFA04771.1| hypothetical protein TcasGA2_TC030678 [Tribolium castaneum]
Length = 138
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL + NLCPET EEA +++PS++ R +DE ++ +L+D+
Sbjct: 76 ISAVRNLLMQKKLHKFELAAIANLCPETTEEAKSLIPSLEGR---FEDEELQAVLDDI 130
>gi|195450000|ref|XP_002072320.1| GK22783 [Drosophila willistoni]
gi|194168405|gb|EDW83306.1| GK22783 [Drosophila willistoni]
Length = 116
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 60 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 108
>gi|281362019|ref|NP_001014633.2| Rpb4 [Drosophila melanogaster]
gi|143459115|sp|Q9VEA5.5|RPB4_DROME RecName: Full=DNA-directed RNA polymerase II 16 kDa polypeptide;
AltName: Full=RNA polymerase II accessory factor rpb4
gi|66571194|gb|AAY51562.1| IP01323p [Drosophila melanogaster]
gi|66772825|gb|AAY55724.1| IP02337p [Drosophila melanogaster]
gi|66772827|gb|AAY55725.1| IP02340p [Drosophila melanogaster]
gi|220943406|gb|ACL84246.1| Rpb4-PF [synthetic construct]
gi|220955702|gb|ACL90394.1| Rpb4-PF [synthetic construct]
gi|272477037|gb|AAF55522.5| Rpb4 [Drosophila melanogaster]
Length = 139
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 83 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 131
>gi|321476639|gb|EFX87599.1| hypothetical protein DAPPUDRAFT_306425 [Daphnia pulex]
Length = 137
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I + +L + +L +FEL L NLCPE+ EEA +++PS++ R +DE + ++L D+
Sbjct: 75 IAAIRSLLMQKKLHKFELAALANLCPESPEEAKSLIPSLEGR---FEDEELRQILEDIQT 131
Query: 74 IKKFE 78
+ F+
Sbjct: 132 KRSFQ 136
>gi|195569945|ref|XP_002102969.1| GD20190 [Drosophila simulans]
gi|194198896|gb|EDX12472.1| GD20190 [Drosophila simulans]
Length = 782
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+ + +
Sbjct: 726 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIGTKRSLQ 781
>gi|195348909|ref|XP_002040989.1| GM15313 [Drosophila sechellia]
gi|194122594|gb|EDW44637.1| GM15313 [Drosophila sechellia]
Length = 137
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 81 LLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 129
>gi|157113945|ref|XP_001652151.1| histone acetyltransferase, putative [Aedes aegypti]
gi|108877515|gb|EAT41740.1| AAEL006661-PA [Aedes aegypti]
Length = 139
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L +L +FEL LGNLCPE +EA A++PS++ R +DE + ++L+D+
Sbjct: 77 IASVRSLLMSKKLHKFELAALGNLCPEAPDEAKALIPSLEGR---FEDEELRQILDDI 131
>gi|345497367|ref|XP_001599421.2| PREDICTED: transcriptional adapter 2-alpha [Nasonia vitripennis]
Length = 569
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +LS+ +L +FEL + NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 507 IAAVRNLLSQKKLHKFELASIANLCPETPEEAKALIPSLEGRL---EDEELRTILDDI 561
>gi|195343319|ref|XP_002038245.1| GM10729 [Drosophila sechellia]
gi|194133266|gb|EDW54782.1| GM10729 [Drosophila sechellia]
Length = 146
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+
Sbjct: 70 FLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 118
>gi|156383638|ref|XP_001632940.1| predicted protein [Nematostella vectensis]
gi|156220003|gb|EDO40877.1| predicted protein [Nematostella vectensis]
Length = 138
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
I V +L + +L +FEL L NLCPET EEA A++PS++ R
Sbjct: 76 IAQVRSLLGKKKLHKFELACLANLCPETAEEAKALIPSLEGR 117
>gi|356558007|ref|XP_003547301.1| PREDICTED: uncharacterized protein LOC100775535 [Glycine max]
Length = 174
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
L++ L + E+CV+GN+CPET++E A++PS+K + R D + ++ L+ L+ ++
Sbjct: 118 LAKCGLTDSEICVIGNVCPETIDEVFALLPSLKDK-RNIDRQVLKDSLSQLAKFRQ 172
>gi|307179587|gb|EFN67883.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Camponotus
floridanus]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FE+ L NLCPET EEA A++PS++ GR D+E + +L+D+
Sbjct: 62 IAAVRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLE--GRLEDEE-LRTILDDI 116
>gi|307108038|gb|EFN56279.1| hypothetical protein CHLNCDRAFT_145153 [Chlorella variabilis]
Length = 130
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+++ QL+E EL ++ NL ET +EA +VP++ R R DD ++ +L +L+ ++FE
Sbjct: 72 VIAHNQLSELELGLVANLSIETADEARKLVPTLDDRDRFPDDATLDALLKELATYREFE 130
>gi|353242845|emb|CCA74453.1| hypothetical protein PIIN_08406 [Piriformospora indica DSM 11827]
Length = 135
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 9 AAELKIGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
+ E IG V L R L +FE L NLCP T EEA +++PS+ +DD+ ++ +
Sbjct: 68 STEDTIGLVRATLRRQANLTQFETAQLANLCPSTAEEAKSIIPSLA----KYDDDELQPL 123
Query: 68 LNDLSLIKKFE 78
L++L +++F+
Sbjct: 124 LDELQSMRRFQ 134
>gi|302687374|ref|XP_003033367.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
gi|300107061|gb|EFI98464.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
Length = 135
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
QL +FE L NLCP EEA +++PS++ + DD+ ++ +LN++ ++KF+
Sbjct: 84 QLTQFETAQLANLCPAEAEEAKSIIPSLEDKV---DDDRLQALLNEIQTMRKFQ 134
>gi|383851643|ref|XP_003701341.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 1
[Megachile rotundata]
Length = 569
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 507 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|328787524|ref|XP_391932.4| PREDICTED: transcriptional adapter 2-alpha-like [Apis mellifera]
Length = 569
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 507 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
V LS+Y +++ E+CV+ N CPET++E A+VPS+K +
Sbjct: 167 VLEPLSKYGVSDGEICVIANTCPETIDEVFALVPSLKPK 205
>gi|383851645|ref|XP_003701342.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 2
[Megachile rotundata]
Length = 580
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 518 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 572
>gi|380027418|ref|XP_003697421.1| PREDICTED: transcriptional adapter 2-alpha-like [Apis florea]
Length = 569
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 507 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILDDI 561
>gi|307196407|gb|EFN77996.1| Transcriptional adapter 2-alpha [Harpegnathos saltator]
Length = 570
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L++ +L +FEL L NLCPET EEA A++PS++ R +DE + +L D+
Sbjct: 508 ITAVRNLLAQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILEDIQT 564
Query: 74 IKKFE 78
+ +
Sbjct: 565 KRSLQ 569
>gi|170583187|ref|XP_001896469.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Brugia malayi]
gi|158596317|gb|EDP34682.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative [Brugia
malayi]
Length = 138
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L+ L +FE+ + NLCPET EEA A++PS++ + DDE ++++L DL
Sbjct: 77 IRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE--NKMEDDE-LDEVLKDLHS 133
Query: 74 IKKFE 78
K F+
Sbjct: 134 KKTFQ 138
>gi|312080440|ref|XP_003142600.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307762235|gb|EFO21469.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
Length = 138
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L+ L +FE+ + NLCPET EEA A++PS++ + DDE ++++L DL
Sbjct: 77 IRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE--NKMEDDE-LDEVLKDLHS 133
Query: 74 IKKFE 78
K F+
Sbjct: 134 KKTFQ 138
>gi|389609397|dbj|BAM18310.1| histone acetyltransferase rpb4 [Papilio xuthus]
Length = 151
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 76 IAAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGR---FEDEELRILLDDI 130
>gi|357619360|gb|EHJ71970.1| putative histone acetyltransferase [Danaus plexippus]
Length = 138
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V +L +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 76 ITAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGR---FEDEELRILLDDIQ 131
>gi|240849411|ref|NP_001155406.1| histone acetyltransferase-like [Acyrthosiphon pisum]
gi|328700946|ref|XP_003241435.1| PREDICTED: DNA-directed RNA polymerase II 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239793466|dbj|BAH72847.1| ACYPI000946 [Acyrthosiphon pisum]
Length = 138
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%), Gaps = 3/55 (5%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
V +L+ +L +FEL +GNLCP+ +EA +++PS++ GR DDE ++++L+D+
Sbjct: 79 VRNLLAGKKLHKFELASIGNLCPQLADEAKSLIPSLE--GRFDDDE-LQQILDDI 130
>gi|350418623|ref|XP_003491918.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus impatiens]
Length = 569
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L D+
Sbjct: 507 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILEDI 561
>gi|340722607|ref|XP_003399695.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus terrestris]
Length = 569
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FEL L NLCPET EEA A++PS++ R +DE + +L D+
Sbjct: 507 IAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR---LEDEELRTILEDI 561
>gi|332022936|gb|EGI63202.1| Transcriptional adapter 2-alpha [Acromyrmex echinatior]
Length = 567
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 505 IAAVRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRL---EDEELRTILDDIQT 561
Query: 74 IKKFE 78
+ +
Sbjct: 562 KRSLQ 566
>gi|358055256|dbj|GAA98764.1| hypothetical protein E5Q_05452 [Mixia osmundae IAM 14324]
Length = 477
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 12 LKIGDVFRILS---RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRG-------RAHDD 61
L+ D+ R+ S R LA+FE C L NL P+TVEEA A++PSI+ DD
Sbjct: 76 LEPSDIARLRSALLRESLADFEACSLANLRPKTVEEAKAILPSIQREAVRDGEPPVQRDD 135
Query: 62 EAIEKMLNDL 71
+ I+ +L+ L
Sbjct: 136 DGIQAILDLL 145
>gi|322792882|gb|EFZ16715.1| hypothetical protein SINV_12361 [Solenopsis invicta]
Length = 589
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
I V +L + +L +FE+ L NLCPET EEA A++PS++ R +DE + +L+D+
Sbjct: 527 ISAVRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRL---EDEELRTILDDI 581
>gi|449679512|ref|XP_004209350.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Hydra
magnipapillata]
Length = 143
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +LS+ +L +FEL + NLCPE EEA ++PS++ GR ++E ++++L+++
Sbjct: 81 IAQVRGLLSKKKLHKFELACIANLCPENAEEARTLIPSLE--GRFVEEE-LQQILDEIKT 137
Query: 74 IKKFE 78
+ F+
Sbjct: 138 HRSFQ 142
>gi|71021277|ref|XP_760869.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
gi|46100965|gb|EAK86198.1| hypothetical protein UM04722.1 [Ustilago maydis 521]
Length = 175
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 16/74 (21%)
Query: 4 EEEENAAELKIGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA 63
E+E NAA L QL +FE+ L NLC V+EA A++P++ TR DD
Sbjct: 117 EDEANAAGL------------QLTQFEMAQLANLCITEVDEAKALIPTLATR----DDAL 160
Query: 64 IEKMLNDLSLIKKF 77
++ +L +L I++F
Sbjct: 161 LDSLLQELDNIRRF 174
>gi|343426150|emb|CBQ69681.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Sporisorium reilianum SRZ2]
Length = 174
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
QL +FE+ L NLC V+EA A++P++ TR DD ++ +L +L I++F
Sbjct: 125 QLTQFEMAQLANLCITEVDEAKALIPTLATR----DDALLDSLLQELDNIRRF 173
>gi|412990641|emb|CCO18013.1| predicted protein [Bathycoccus prasinos]
Length = 146
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L FE V+ NL P +EA +VPS++ GRA +E I++ML++++ +++FE
Sbjct: 95 LHTFEAAVVSNLRPVDYDEAKTLVPSLEAEGRAS-EEQIQRMLDEMANVRRFE 146
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L L+
Sbjct: 168 VKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEALTALAD 226
Query: 74 IK 75
IK
Sbjct: 227 IK 228
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L L+
Sbjct: 176 VKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEALTALAD 234
Query: 74 IK 75
IK
Sbjct: 235 IK 236
>gi|308503128|ref|XP_003113748.1| CRE-RPB-4 protein [Caenorhabditis remanei]
gi|308263707|gb|EFP07660.1| CRE-RPB-4 protein [Caenorhabditis remanei]
Length = 144
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V I S L +FE+ + NLCPE EEA A+VPS++ + ++ +E++L DL
Sbjct: 83 IRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---EESELEEVLKDLQS 139
Query: 74 IKKFE 78
+ F+
Sbjct: 140 KRTFQ 144
>gi|193204561|ref|NP_495544.2| Protein RPB-4 [Caenorhabditis elegans]
gi|351021285|emb|CCD63552.1| Protein RPB-4 [Caenorhabditis elegans]
Length = 144
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V I S L +FE+ + NLCPE EEA A+VPS++ + ++ +E++L DL
Sbjct: 83 IRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---EESELEEVLKDLQS 139
Query: 74 IKKFE 78
+ F+
Sbjct: 140 KRTFQ 144
>gi|268562714|ref|XP_002646754.1| C. briggsae CBR-RPB-4 protein [Caenorhabditis briggsae]
Length = 148
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V I S L +FE+ + NLCPE EEA A+VPS++ + ++ +E++L DL
Sbjct: 87 IRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENKI---EESELEEVLKDLQS 143
Query: 74 IKKFE 78
+ F+
Sbjct: 144 KRTFQ 148
>gi|145350124|ref|XP_001419467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357498|ref|XP_001422955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579699|gb|ABO97760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583199|gb|ABP01314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NL P+ +EA +VPS++ R +E I+ ML+++S ++KFE
Sbjct: 95 LHDFEGAAISNLKPQDWDEAKTLVPSLEQEDRGLTEEGIQAMLDEMSNVRKFE 147
>gi|452825468|gb|EME32464.1| DNA-directed RNA polymerase II subunit D [Galdieria sulphuraria]
Length = 150
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 16 DVFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+V +L RY+ L FE+ L NLCP EEA +PS+K + DD ++ ++L DL+
Sbjct: 92 NVRNLLQRYESLDPFEMACLANLCPADAEEAKTTIPSLKHKI---DDSSLNQLLQDLA 146
>gi|443900174|dbj|GAC77501.1| hypothetical protein PANT_26d00080 [Pseudozyma antarctica T-34]
Length = 166
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
QL +FE+ L NLC V+EA A++P++ TR DD ++ +L +L +++F
Sbjct: 117 QLTQFEMAQLANLCITEVDEAKALIPTLATR----DDALLDSLLQELDNVRRF 165
>gi|402077442|gb|EJT72791.1| hypothetical protein GGTG_09646 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 143
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 17 VFRILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
V R+LS R +L +FE LG+LCPET EEA ++PS+K +
Sbjct: 86 VERLLSARPELTKFERAALGSLCPETAEEAKRLIPSLKDK 125
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L L+ IK
Sbjct: 182 LRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEALTALADIK 235
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ V L +Y +++ E+C++ N+ PET+EE A+VPS+K R+ ++ I + L L+
Sbjct: 65 VKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKAT-RSLNESPIMEALTALAD 123
Query: 74 IK 75
IK
Sbjct: 124 IK 125
>gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae]
Length = 155
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 24 YQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
Y+L EFE+ L NL PE VEEA+A++PS+ R
Sbjct: 102 YRLEEFEIACLSNLNPEEVEEAVALIPSLHKR 133
>gi|301118222|ref|XP_002906839.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 155
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 24 YQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
Y+L EFE+ L NL PE VEEA+A++PS+ R
Sbjct: 102 YRLEEFEIACLSNLNPEEVEEAVALIPSLHKR 133
>gi|241727036|ref|XP_002413767.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215507583|gb|EEC17075.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|442756991|gb|JAA70654.1| Putative dna-directed rna polymerase ii [Ixodes ricinus]
Length = 144
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L + +L +FE L NLCP+ EEA A++PS++ G DD+ + ++L+D+
Sbjct: 82 ITAVRNLLKQKKLHKFEAAQLANLCPDNPEEAKALIPSLE--GMFEDDD-LRQILDDIQT 138
Query: 74 IKKFE 78
+ F+
Sbjct: 139 QRSFQ 143
>gi|395331653|gb|EJF64033.1| RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 134
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE+ + NLCP T EEA ++VPS+ DD+ ++ +L+++ ++KF+
Sbjct: 85 LTQFEIAQIANLCPVTAEEAKSIVPSLVK----IDDDKLQPLLDEIQTMRKFQ 133
>gi|388857176|emb|CCF49189.1| related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
[Ustilago hordei]
Length = 167
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
QL +FE+ L NLC VEEA A++P++ TR A D +++M N I++F
Sbjct: 118 QLTQFEMAQLANLCITEVEEAKALIPTLATRDEAMLDGVLQEMDN----IRRF 166
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
L ++ ++E E+C + N+CP+ V+E A+VPS+K++ E ++ +L LS +K+
Sbjct: 147 LKKHGVSEGEICTIANVCPDGVDEVFALVPSLKSKKNVL-REPLKDILGQLSELKQ 201
>gi|116488104|gb|ABJ98634.1| RNA polymerase II subunit D [Scophthalmus maximus]
Length = 129
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDE 62
I V +L + +L +FEL + NLCPE EEA A+ PS++ GR D+E
Sbjct: 82 ITAVRSLLLQKKLHKFELASMANLCPEAAEEAKALTPSLE--GRFEDEE 128
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
V L Y +++ E+CV+ N E+V+E +A +PS+KT+ + ++ ++ L +LS +KK
Sbjct: 145 VLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKK 203
Query: 77 FE 78
E
Sbjct: 204 SE 205
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
V L Y +++ E+CV+ N E+V+E +A +PS+KT+ ++ ++ L +LS +KK
Sbjct: 145 VLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTKKEVI-NQPLQDALEELSKLKK 203
Query: 77 FE 78
E
Sbjct: 204 SE 205
>gi|401827328|ref|XP_003887756.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
gi|392998763|gb|AFM98775.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 16 DVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
D+ LS +E E+ + G+L P++VEEA ++VPS++++G ++A+EK+
Sbjct: 65 DLRTTLSALGFSELEIALFGSLFPQSVEEAKSLVPSLESKGDDVVEQAVEKI 116
>gi|358339513|dbj|GAA47564.1| DNA-directed RNA polymerase II subunit RPB4 [Clonorchis sinensis]
Length = 140
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +LS+ + FEL + NL P+T EEA A++PS+ + DE ++++L+++
Sbjct: 77 IESVRSLLSQKRFHGFELAAIANLLPDTAEEAKALIPSLDSSR--FTDEELQQLLDEIQS 134
Query: 74 IKKFE 78
+ F+
Sbjct: 135 KRSFQ 139
>gi|213401929|ref|XP_002171737.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
gi|211999784|gb|EEB05444.1| DNA-directed RNA polymerase II subunit RPB4 [Schizosaccharomyces
japonicus yFS275]
Length = 137
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 19 RILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
RIL + +FE LG LC E EEA ++PS+ T+ DE+++ +L++LS ++KF+
Sbjct: 81 RILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLATK---ISDESLQGILDELSTLRKFQ 136
>gi|19173403|ref|NP_597206.1| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
gi|449328913|gb|AGE95189.1| DNA-directed RNA polymerase II 16kDa polypeptide [Encephalitozoon
cuniculi]
Length = 104
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 16 DVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
D+ LS E E+ + G+L P++VEEA ++VPS+ TR ++A+EK+
Sbjct: 49 DLRTTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSLGTRDDDAINQAVEKI 100
>gi|392512812|emb|CAD26382.2| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 120
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 16 DVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
D+ LS E E+ + G+L P++VEEA ++VPS+ TR ++A+EK+
Sbjct: 65 DLRTTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSLGTRDDDAINQAVEKI 116
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
+ ++ L Y + + E+C++ N+ PET+EE A++PS+K R+ ++ I + L L+
Sbjct: 168 VKEILGPLKDYGVNDGEICMIANIGPETIEEVYALIPSLKAT-RSINEGKIAEALTALAK 226
Query: 74 IK 75
IK
Sbjct: 227 IK 228
>gi|452987725|gb|EME87480.1| hypothetical protein MYCFIDRAFT_27879 [Pseudocercospora fijiensis
CIRAD86]
Length = 152
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+ EFE C L LC ++VEEA ++PS++ G+ D+E +E LN++S ++ F
Sbjct: 103 IVEFERCQLATLCCDSVEEARTLIPSLE--GKISDEE-LENTLNEISKLRDF 151
>gi|7503310|pir||T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans
Length = 580
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
I S L +FE+ + NLCPE EEA A+VPS++ + ++ +E++ D +K+ E
Sbjct: 89 IFSEKHLHKFEVAQIANLCPENAEEAKALVPSLENK---IEESELEELQGDHPSLKQLE 144
>gi|402223652|gb|EJU03716.1| RNA polymerase II [Dacryopinax sp. DJM-731 SS1]
Length = 135
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
LA+FE + NL P T +EA +++P+++ +DD+ ++ +L+++ ++KF+
Sbjct: 86 LAQFETAQIANLTPLTADEAKSVIPTLQ----RYDDDVLQGILDEMQTLRKFQ 134
>gi|392565043|gb|EIW58220.1| RNA polymerase II [Trametes versicolor FP-101664 SS1]
Length = 134
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 6/54 (11%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPS-IKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE+ + NLCP T EE+ +++PS +K DD+ ++ +L+++ ++KF+
Sbjct: 85 LTQFEIAQIANLCPVTAEESKSIIPSLVKV-----DDDKLQPLLDEIQTMRKFQ 133
>gi|430814348|emb|CCJ28407.1| unnamed protein product [Pneumocystis jirovecii]
Length = 168
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L FE LG LC E EEA +VPS+ + DEA++ +L++LS +++F+
Sbjct: 118 LHSFETAQLGTLCCEEAEEARTLVPSLADK---KSDEALQTLLDELSNLRRFQ 167
>gi|346975025|gb|EGY18477.1| hypothetical protein VDAG_08811 [Verticillium dahliae VdLs.17]
Length = 160
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + QLA+FE +G+LC ET EEA ++PS++ + DE ++++L+++S ++
Sbjct: 102 VERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDK---ITDEDLQELLDEISKLQ 158
>gi|302412369|ref|XP_003004017.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261356593|gb|EEY19021.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 160
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + QLA+FE +G+LC ET EEA ++PS++ + DE ++++L+++S ++
Sbjct: 102 VERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDK---ITDEDLQELLDEISKLQ 158
>gi|341899791|gb|EGT55726.1| hypothetical protein CAEBREN_32834 [Caenorhabditis brenneri]
Length = 144
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 52
I V I S L +FE+ + NLCPE EEA A+VPS+
Sbjct: 83 IRAVRAIFSEKHLHKFEIAQIANLCPENAEEAKALVPSL 121
>gi|430811367|emb|CCJ31200.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 58
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L FE LG LC E EEA +VPS+ + DEA++ +L++LS +++F+
Sbjct: 8 LHSFETAQLGTLCCEEAEEARTLVPSLADK---KSDEALQTLLDELSNLRRFQ 57
>gi|393233961|gb|EJD41528.1| hypothetical protein AURDEDRAFT_115438 [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
QL +FE L NL P V+EA ++VPS+ DD+ ++ +L+++ ++KF+
Sbjct: 85 QLTQFETAQLANLVPADVDEAKSIVPSLV----KIDDDRLQSLLDEVQTLRKFQ 134
>gi|71663674|ref|XP_818827.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884099|gb|EAN96976.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 15 GDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 52
G++ L ++ FE+ LG LCP++VEEA+ +VPS+
Sbjct: 114 GEIHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL 151
>gi|71420426|ref|XP_811486.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876155|gb|EAN89635.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 169
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 15 GDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSI 52
G++ L ++ FE+ LG LCP++VEEA+ +VPS+
Sbjct: 114 GEIHGTLKTARMKPFEVVSLGTLCPKSVEEALVLVPSL 151
>gi|19112207|ref|NP_595415.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe 972h-]
gi|9297039|sp|O74825.1|RPB4_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4
gi|256599718|pdb|3H0G|D Chain D, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599730|pdb|3H0G|P Chain P, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|7453509|gb|AAF62856.1|AF149308_1 RNA polymerase II specific subunit Rpb4 [Schizosaccharomyces pombe]
gi|3738191|emb|CAA21284.1| DNA-directed RNA polymerase II complex subunit Rpb4
[Schizosaccharomyces pombe]
gi|6088094|dbj|BAA85621.1| RNA polymerase II subunit 4 (Rpb4) [Schizosaccharomyces pombe]
Length = 135
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 25/94 (26%)
Query: 7 ENAAELKIGDV-------FRILSRYQLAE---------------FELCVLGNLCPETVEE 44
E E+ + DV F + +R++ AE FE LG LC E EE
Sbjct: 44 ETNGEIPMTDVMKKTVAYFNVFARFKTAEATYACERILGNRFHKFERAQLGTLCCEDAEE 103
Query: 45 AIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
A ++PS+ + DD+ ++ +L++LS ++KF+
Sbjct: 104 ARTLIPSLANK---IDDQNLQGILDELSTLRKFQ 134
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
V L +Y +++ E+ ++ N+ PET +EA A+VPS+K++ E ++ +L +L+ K+
Sbjct: 137 VLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTL-REPLKDILGELAKFKQ 195
>gi|393221841|gb|EJD07325.1| hypothetical protein FOMMEDRAFT_164324 [Fomitiporia mediterranea
MF3/22]
Length = 135
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NLCP EEA +++PS+ DD+ ++ +L+++ ++KF+
Sbjct: 86 LTQFETAQIANLCPADAEEAKSIIPSLA----KIDDDRLQALLDEIQTMRKFQ 134
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
L + +++ E+C++ N+ PETVEE A+VPS+K R+ + ++ ++L L+ IK
Sbjct: 163 LKKCGVSDGEICMIANIGPETVEEVYALVPSLKAN-RSAIEGSVTEVLTALANIK 216
>gi|345566765|gb|EGX49707.1| hypothetical protein AOL_s00078g196 [Arthrobotrys oligospora ATCC
24927]
Length = 158
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
LA FE LG LC ET EEA ++PSI + DE ++++L++++ + F
Sbjct: 108 LASFEKSQLGTLCCETSEEAKTLIPSISDK---KSDEDLQELLDEITKFRTF 156
>gi|388583691|gb|EIM23992.1| hypothetical protein WALSEDRAFT_59044 [Wallemia sebi CBS 633.66]
Length = 134
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
++ +FE +GNL P VEEA +++PS+ HD+ ++ +L++L ++K +
Sbjct: 85 KMTQFEQAQIGNLVPGDVEEAKSLIPSL----YEHDEMTVQTILDELDALRKMQ 134
>gi|169849315|ref|XP_001831361.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
gi|116507629|gb|EAU90524.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
Length = 134
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NLCP + EEA +++PS+ DD+ ++ +++++ ++KF+
Sbjct: 85 LTQFETAQIANLCPASAEEAKSIIPSLV----KIDDDRLQALVDEIQTMRKFQ 133
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
L + +++ E+C++ N+ PETVEE A+VPS+K R+ + ++ ++L L+ IK
Sbjct: 59 LKKCGVSDGEICMIANIGPETVEEVYALVPSLKAN-RSAIEGSVTEVLTALANIK 112
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLND 70
V L + +++ E+CV+ N P+TV+E +A +PS+K + E I + L D
Sbjct: 150 VLEPLKTHGVSDGEMCVIANASPDTVDEVLAFIPSLKAK-----KEVINQPLQD 198
>gi|429856634|gb|ELA31534.1| polymerase II polypeptide d [Colletotrichum gloeosporioides Nara
gc5]
Length = 144
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + QLA+FE +G+LC ET EEA ++PS++ + D+ ++ +L+++S ++
Sbjct: 86 VERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKI---SDDDLQILLDEISKLQ 142
>gi|164659690|ref|XP_001730969.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
gi|159104867|gb|EDP43755.1| hypothetical protein MGL_1968 [Malassezia globosa CBS 7966]
Length = 155
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
QL +FE+ L NL ++EA ++P++ ++ DD +E +L++L+ I+ F
Sbjct: 106 QLTQFEMAQLANLSVTDIDEARTLIPTLASK----DDAQLESLLHELTAIRSF 154
>gi|310793276|gb|EFQ28737.1| RNA polymerase Rpb4 [Glomerella graminicola M1.001]
Length = 144
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + QLA+FE +G+LC ET EEA ++PS++ + D+ ++ +L+++S ++
Sbjct: 86 VERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKI---SDDDLQILLDEISKLQ 142
>gi|380495044|emb|CCF32692.1| RNA polymerase Rpb4 [Colletotrichum higginsianum]
Length = 144
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + QLA+FE +G+LC ET EEA ++PS++ + D+ ++ +L+++S ++
Sbjct: 86 VERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDKI---SDDDLQILLDEISKLQ 142
>gi|320592320|gb|EFX04759.1| DNA directed RNA polymerase 2 polypeptide d [Grosmannia clavigera
kw1407]
Length = 143
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 22 SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
S +L +FE LG+LCPE VEEA ++PS+ +
Sbjct: 92 SHTELTKFERAALGSLCPEGVEEAKTLIPSLTNK 125
>gi|325180261|emb|CCA14664.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 155
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
+L EFE+ L NL PE VEEA++++PS+ R
Sbjct: 103 RLEEFEISCLSNLNPEEVEEAVSLIPSLSKR 133
>gi|403411898|emb|CCL98598.1| predicted protein [Fibroporia radiculosa]
Length = 153
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH--------------DDEAIEKMLNDL 71
L +FE + NLCP EEA ++VP +H DD+ ++ +L ++
Sbjct: 86 LTQFETAQIANLCPANAEEAKSVVPRYMVTSSSHDYVIAYGNQSLVKIDDDRLQTLLQEI 145
Query: 72 SLIKKFE 78
++KF+
Sbjct: 146 QTMRKFQ 152
>gi|303275790|ref|XP_003057189.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461541|gb|EEH58834.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 150
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 17 VFR-ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGR----AHDDEAIEKMLNDL 71
FR + ++ L +FE ++ NL EEAIA +PS+ +G H +E + K+++D+
Sbjct: 84 AFRNLYAQAGLTDFEGAIMVNLNFGDYEEAIAHLPSLARKGDDGILIHSEEKVSKLIDDM 143
Query: 72 SLIKKFE 78
+ +++FE
Sbjct: 144 ADVRRFE 150
>gi|336368399|gb|EGN96742.1| hypothetical protein SERLA73DRAFT_140488 [Serpula lacrymans var.
lacrymans S7.3]
Length = 134
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NLCP EEA +++PS+ DD+ ++ +L+++ ++KF+
Sbjct: 85 LTQFETAQIANLCPGDAEEAKSVIPSLV----KIDDDRLQALLDEIQTMRKFQ 133
>gi|452847857|gb|EME49789.1| hypothetical protein DOTSEDRAFT_76985 [Dothistroma septosporum
NZE10]
Length = 204
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+ +FE L LC +T EEA +VPS++ G+ DDE +E +LND++ ++ F+
Sbjct: 155 ITQFERAQLATLCCDTPEEARTLVPSLE--GKIADDE-LEIVLNDIAKLRDFQ 204
>gi|47216495|emb|CAG02146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 145
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVP 50
I V +L + +L +FEL L NLCPE EEA A++P
Sbjct: 80 ITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIP 116
>gi|449020090|dbj|BAM83492.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 136
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 14 IGDVFRI-LSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
+ V R+ L R+ +L FE L NL PET EA A++PS+K + DD+ + ++L DL
Sbjct: 75 VAKVVRVRLERHPELHPFERAQLANLLPETPAEAKAIIPSLKGK---LDDDVLGQLLRDL 131
Query: 72 S 72
+
Sbjct: 132 A 132
>gi|396081878|gb|AFN83492.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon romaleae SJ-2008]
Length = 104
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 16 DVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
D+ S +E E+ +LG+L P++VEEA ++PS+ ++ +A+EK+
Sbjct: 49 DLRTTFSGLGFSELEIALLGSLFPQSVEEAKTLIPSLASKSDDAIGQAVEKI 100
>gi|170086716|ref|XP_001874581.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649781|gb|EDR14022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 134
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NLCP EEA +++PS+ DD+ ++ +L ++ ++KF+
Sbjct: 85 LTQFETAQIANLCPADAEEAKSVIPSLV----KIDDDRLQALLEEIQTMRKFQ 133
>gi|396473070|ref|XP_003839260.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
gi|312215829|emb|CBX95781.1| hypothetical protein LEMA_P029330.1 [Leptosphaeria maculans JN3]
Length = 389
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 35 GNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
G L PET EEA ++PS+ T+ A D + I LN L +++ E
Sbjct: 338 GTLTPETAEEATYLIPSLATKMHADDLQPILDELNKLRMLEHVE 381
>gi|366991007|ref|XP_003675271.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
gi|342301135|emb|CCC68900.1| hypothetical protein NCAS_0B08160 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA +VPS+ + DDE +E++L +LS
Sbjct: 185 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLVPSLN--NKISDDE-LERILKELS 240
>gi|256084764|ref|XP_002578596.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
gi|353232909|emb|CCD80264.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 140
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSL 73
I V +L++ + FEL L NL P+T EE+ A++PS+ + +E ++++L+++
Sbjct: 77 IESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSLDSPRFT--EEELQQLLDEIQS 134
Query: 74 IKKFE 78
+ F+
Sbjct: 135 KRSFQ 139
>gi|407929444|gb|EKG22274.1| hypothetical protein MPH_00453 [Macrophomina phaseolina MS6]
Length = 80
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 22 SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+R LA FE LG LC ET +EA ++PS++ + D ++++L ++S ++ F
Sbjct: 26 TRNDLAGFERSQLGTLCCETADEAKTLIPSLQDK---ISDADLQQLLTEISRLRHF 78
>gi|156844386|ref|XP_001645256.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
gi|156115915|gb|EDO17398.1| hypothetical protein Kpol_1060p55 [Vanderwaltozyma polyspora DSM
70294]
Length = 221
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 215
>gi|296424796|ref|XP_002841932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638184|emb|CAZ86123.1| unnamed protein product [Tuber melanosporum]
Length = 146
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 17 VFRILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V RIL+ + L FE LG LC +T +EA ++PSI+ + DE ++++L++++ ++
Sbjct: 87 VERILALQTDLVAFEKSQLGTLCCDTADEAKVLIPSIEGK---KSDEDLQELLDEITKLR 143
Query: 76 KF 77
+F
Sbjct: 144 QF 145
>gi|444316670|ref|XP_004178992.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
gi|387512032|emb|CCH59473.1| hypothetical protein TBLA_0B06500 [Tetrapisispora blattae CBS 6284]
Length = 208
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L +L FE+ LG+L ++ +EA ++PS+ + DDE +E++L +LS
Sbjct: 147 VGAVIQLLKSTELHPFEIAQLGSLACDSADEAKTLIPSLN--NKISDDE-LERILKELS 202
>gi|119195963|ref|XP_001248585.1| hypothetical protein CIMG_02356 [Coccidioides immitis RS]
gi|392862210|gb|EAS37168.2| polymerase II polypeptide D [Coccidioides immitis RS]
Length = 149
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA A++PSI G D ++++L++L+
Sbjct: 86 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GNKISDADLQELLDELT 142
Query: 73 LIKKF 77
++ F
Sbjct: 143 KLRNF 147
>gi|410080694|ref|XP_003957927.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
gi|372464514|emb|CCF58792.1| hypothetical protein KAFR_0F01950 [Kazachstania africana CBS 2517]
Length = 199
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 138 VGAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 193
>gi|156050981|ref|XP_001591452.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980]
gi|154692478|gb|EDN92216.1| hypothetical protein SS1G_08079 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 17 VFRIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+L SR +LA+FE LG+LC +T +EA ++PS++ + DD+ E +L++++ +
Sbjct: 86 VERLLGSRSELAKFERAQLGSLCCDTADEAKTLIPSLQ--DKISDDDLTE-LLDEITKLM 142
Query: 76 KF 77
F
Sbjct: 143 GF 144
>gi|320040371|gb|EFW22304.1| RNA polymerase Rpb4 [Coccidioides posadasii str. Silveira]
Length = 149
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA A++PSI G D ++++L++L+
Sbjct: 86 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GSKISDADLQELLDELT 142
Query: 73 LIKKF 77
++ F
Sbjct: 143 KLRNF 147
>gi|303321770|ref|XP_003070879.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110576|gb|EER28734.1| RNA polymerase Rpb4 family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 225
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + +L FE LG+LC + EEA A++PSI G D ++++L++L+ ++
Sbjct: 165 VERLLSAHTELEFFERSQLGSLCCDNAEEAKALIPSI---GNKISDADLQELLDELTKLR 221
Query: 76 KF 77
F
Sbjct: 222 NF 223
>gi|6322321|ref|NP_012395.1| Rpb4p [Saccharomyces cerevisiae S288c]
gi|133336|sp|P20433.1|RPB4_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName: Full=B32;
AltName: Full=DNA-directed RNA polymerase II 32 kDa
polypeptide
gi|30749740|pdb|1NT9|D Chain D, Complete 12-Subunit Rna Polymerase Ii
gi|61679447|pdb|1Y1W|D Chain D, Complete Rna Polymerase Ii Elongation Complex
gi|61679464|pdb|1Y77|D Chain D, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679505|pdb|1Y1V|D Chain D, Refined Rna Polymerase Ii-tfiis Complex
gi|61679518|pdb|1Y1Y|D Chain D, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754246|pdb|2B63|D Chain D, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590857|pdb|2B8K|D Chain D, 12-Subunit Rna Polymerase Ii
gi|134104677|pdb|2JA5|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104692|pdb|2JA6|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104713|pdb|2JA7|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104725|pdb|2JA7|P Chain P, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104737|pdb|2JA8|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877776|pdb|2R7Z|D Chain D, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172230|pdb|2R92|D Chain D, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172243|pdb|2R93|D Chain D, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613465|pdb|2VUM|D Chain D, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983593|pdb|3FKI|D Chain D, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104514|pdb|3H3V|E Chain E, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839444|pdb|3HOU|D Chain D, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839459|pdb|3HOU|P Chain P, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839474|pdb|3HOV|D Chain D, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839489|pdb|3HOW|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839504|pdb|3HOX|D Chain D, Complete Rna Polymerase Ii Elongation Complex V
gi|254839519|pdb|3HOY|D Chain D, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839534|pdb|3HOZ|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471949|pdb|3I4M|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471964|pdb|3I4N|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618768|pdb|3K1F|D Chain D, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053966|pdb|3PO2|D Chain D, Arrested Rna Polymerase Ii Elongation Complex
gi|325053981|pdb|3PO3|D Chain D, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|353251636|pdb|3J0K|D Chain D, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380839|pdb|4A3C|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546293|pdb|4A3B|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546311|pdb|4A3D|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546328|pdb|4A3E|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546345|pdb|4A3F|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546362|pdb|4A3J|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546379|pdb|4A3K|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546395|pdb|4A3L|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546412|pdb|4A3M|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977882|pdb|4A3G|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977897|pdb|4A3I|D Chain D, Rna Polymerase Ii Binary Complex With Dna
gi|380764982|pdb|4A93|D Chain D, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145449|pdb|4BBR|D Chain D, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145462|pdb|4BBS|D Chain D, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|4834|emb|CAA41112.1| RPB4 [Saccharomyces cerevisiae]
gi|295648|gb|AAA34996.1| RNA polymerase II subunit RPB4 [Saccharomyces cerevisiae]
gi|854557|emb|CAA60815.1| RNA polymerase II subunit 4 [Saccharomyces cerevisiae]
gi|1015548|emb|CAA89435.1| RPB4 [Saccharomyces cerevisiae]
gi|45269603|gb|AAS56182.1| YJL140W [Saccharomyces cerevisiae]
gi|151944986|gb|EDN63241.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190409366|gb|EDV12631.1| RNA polymerase II fourth largest subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256272141|gb|EEU07141.1| Rpb4p [Saccharomyces cerevisiae JAY291]
gi|285812762|tpg|DAA08660.1| TPA: Rpb4p [Saccharomyces cerevisiae S288c]
gi|290771093|emb|CBK33718.1| Rpb4p [Saccharomyces cerevisiae EC1118]
gi|323348033|gb|EGA82291.1| Rpb4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354389|gb|EGA86228.1| Rpb4p [Saccharomyces cerevisiae VL3]
gi|349579060|dbj|GAA24223.1| K7_Rpb4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764917|gb|EHN06435.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298625|gb|EIW09722.1| Rpb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 221
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 215
>gi|407280318|pdb|1WCM|D Chain D, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
Length = 177
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 116 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 171
>gi|326634541|pdb|3QT1|D Chain D, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 219
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 158 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 213
>gi|401841500|gb|EJT43882.1| RPB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 221
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 215
>gi|365760048|gb|EHN01796.1| Rpb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 221
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 215
>gi|440639230|gb|ELR09149.1| DNA-directed RNA polymerase II subunit D [Geomyces destructans
20631-21]
Length = 149
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 17 VFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS + +LA+FE LG+LC E EEA +VPS+ + D+ ++++LN+++ +
Sbjct: 89 VERLLSAHPELAKFERAQLGSLCCELAEEAKTLVPSLADKI---SDDDLQELLNEINKHR 145
Query: 76 KFE 78
++
Sbjct: 146 GYD 148
>gi|34810556|pdb|1PQV|D Chain D, Rna Polymerase Ii-Tfiis Complex
Length = 221
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 215
>gi|366999342|ref|XP_003684407.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
gi|357522703|emb|CCE61973.1| hypothetical protein TPHA_0B03010 [Tetrapisispora phaffii CBS 4417]
Length = 202
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 141 VGAVIQLLRSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN--KISDDE-LERILKELS 196
>gi|61679565|pdb|1Y14|A Chain A, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679567|pdb|1Y14|C Chain C, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
Length = 187
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 126 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 181
>gi|323304432|gb|EGA58203.1| Rpb4p [Saccharomyces cerevisiae FostersB]
gi|323308580|gb|EGA61824.1| Rpb4p [Saccharomyces cerevisiae FostersO]
Length = 108
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 47 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 102
>gi|154296757|ref|XP_001548808.1| hypothetical protein BC1G_12406 [Botryotinia fuckeliana B05.10]
gi|347836043|emb|CCD50615.1| hypothetical protein [Botryotinia fuckeliana]
Length = 146
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 17 VFRIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+L SR +LA+FE LG+LC +T +EA ++PS++ + DD+ E +L++++ +
Sbjct: 86 VERLLGSRGELAKFERAQLGSLCCDTADEAKTLIPSLQ--DKISDDDLTE-LLDEITKLM 142
Query: 76 KF 77
F
Sbjct: 143 GF 144
>gi|323332974|gb|EGA74376.1| Rpb4p [Saccharomyces cerevisiae AWRI796]
Length = 108
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 47 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 102
>gi|358394175|gb|EHK43576.1| hypothetical protein TRIATDRAFT_148798 [Trichoderma atroviride IMI
206040]
Length = 142
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + + DE ++ +L+++S ++
Sbjct: 84 VERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDLQDLLDEISKLQ 140
>gi|346320862|gb|EGX90462.1| polymerase (RNA) II (DNA directed) polypeptide D [Cordyceps
militaris CM01]
Length = 143
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E+ +EA ++PS+ + + DE ++++L ++S ++
Sbjct: 85 VERLLSTHKDLAKFERAQLGSLCCESADEAKTLIPSLTEKIK---DEDLQELLEEISKLQ 141
>gi|389626587|ref|XP_003710947.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|351650476|gb|EHA58335.1| hypothetical protein MGG_04508 [Magnaporthe oryzae 70-15]
gi|440463443|gb|ELQ33023.1| hypothetical protein OOU_Y34scaffold01005g49 [Magnaporthe oryzae
Y34]
gi|440481312|gb|ELQ61911.1| hypothetical protein OOW_P131scaffold01138g29 [Magnaporthe oryzae
P131]
Length = 150
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 19 RILS-RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
R+LS R +L +FE + +L PE +EA ++PS+K + DD +E +L +LS
Sbjct: 95 RLLSARPELHKFERAQIASLVPENSDEAKKLIPSLKDK---FDDHDLEDLLQELS 146
>gi|303390270|ref|XP_003073366.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
gi|303302512|gb|ADM12006.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 16 DVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
D+ S +E E+ +LG+L P++VEEA +++PS+ ++ A+EK+
Sbjct: 49 DLRTTFSGLGFSEVEIALLGSLFPQSVEEAKSLIPSLASKDDDTISHAVEKI 100
>gi|453089606|gb|EMF17646.1| RNA_pol_Rpb4-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 148
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 24 YQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
Y + EFE + LC ++ EEA ++PS++ G+ DDE ++ +L+++S ++ F
Sbjct: 97 YGIVEFERAQIATLCCDSAEEARTLIPSLE--GKISDDE-LQAVLDEISKLRDF 147
>gi|290996786|ref|XP_002680963.1| predicted protein [Naegleria gruberi]
gi|284094585|gb|EFC48219.1| predicted protein [Naegleria gruberi]
Length = 141
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 23 RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
R +L F++ L NL P EEA ++PS+K A D+ I +L DL +K
Sbjct: 91 RRKLQPFQIAQLANLMPGDAEEAATLIPSLK----AFDETEIGNLLKDLESLK 139
>gi|358387427|gb|EHK25022.1| hypothetical protein TRIVIDRAFT_30210 [Trichoderma virens Gv29-8]
Length = 142
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + + DE ++ +L+++S ++
Sbjct: 84 VERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDLQDLLDEISKLQ 140
>gi|322696884|gb|EFY88670.1| RNA polymerase Rpb4 family protein [Metarhizium acridum CQMa 102]
Length = 143
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + + DE ++ +L+++S ++
Sbjct: 85 VERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDLQDLLDEISKLQ 141
>gi|322708586|gb|EFZ00163.1| RNA polymerase Rpb4 family protein [Metarhizium anisopliae ARSEF
23]
Length = 143
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + + DE ++ +L+++S ++
Sbjct: 85 VERLLSAHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDLQDLLDEISKLQ 141
>gi|342319350|gb|EGU11299.1| Hypothetical Protein RTG_02771 [Rhodotorula glutinis ATCC 204091]
Length = 105
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 29 FELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKK 76
FE L NLCP EEA A+VPSI+ +D+ +++ L+D++ +K
Sbjct: 57 FEQVQLVNLCPMEAEEAKALVPSIQV-----EDDQLQQYLDDMTRARK 99
>gi|323337039|gb|EGA78295.1| Rpb4p [Saccharomyces cerevisiae Vin13]
Length = 118
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + DDE +E++L +LS
Sbjct: 57 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN--NKISDDE-LERILKELS 112
>gi|400601404|gb|EJP69047.1| RNA polymerase Rpb4 [Beauveria bassiana ARSEF 2860]
Length = 138
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC ET +EA ++PS+ + DE ++++L ++S ++
Sbjct: 80 VERLLSTHKDLAKFERAQLGSLCCETADEAKTLIPSLADKI---SDEDLKELLEEISKLQ 136
>gi|327305417|ref|XP_003237400.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326460398|gb|EGD85851.1| polymerase II polypeptide D [Trichophyton rubrum CBS 118892]
gi|326472179|gb|EGD96188.1| polymerase II polypeptide D [Trichophyton tonsurans CBS 112818]
gi|326476957|gb|EGE00967.1| polymerase II polypeptide D [Trichophyton equinum CBS 127.97]
Length = 150
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA +++PSI G D ++++L++L+
Sbjct: 87 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQELLDELT 143
Query: 73 LIKKF 77
++ F
Sbjct: 144 KLRNF 148
>gi|302925861|ref|XP_003054179.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735120|gb|EEU48466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 154
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + + DE ++ +L+++S ++
Sbjct: 96 VERLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADKIK---DEDLQDLLDEISKLQ 152
>gi|406867922|gb|EKD20959.1| RNA polymerase Rpb4 family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 146
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTR 55
V R+LS ++ LA+FE LG+LC +T EEA ++PS++ +
Sbjct: 86 VERLLSAHKELAKFERAQLGSLCCDTSEEAKTLIPSLQDK 125
>gi|315046530|ref|XP_003172640.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
gi|311343026|gb|EFR02229.1| polymerase II polypeptide D [Arthroderma gypseum CBS 118893]
Length = 150
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA +++PSI G D ++++L++L+
Sbjct: 87 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQELLDELT 143
Query: 73 LIKKF 77
++ F
Sbjct: 144 KLRNF 148
>gi|302664532|ref|XP_003023895.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
gi|291187915|gb|EFE43277.1| hypothetical protein TRV_01945 [Trichophyton verrucosum HKI 0517]
Length = 163
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA +++PSI G D ++++L++L+
Sbjct: 100 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQELLDELT 156
Query: 73 LIKKF 77
++ F
Sbjct: 157 KLRNF 161
>gi|296805818|ref|XP_002843733.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
gi|238845035|gb|EEQ34697.1| polymerase II polypeptide D [Arthroderma otae CBS 113480]
Length = 150
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA +++PSI G D ++++L++L+
Sbjct: 87 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQELLDELT 143
Query: 73 LIKKF 77
++ F
Sbjct: 144 KLRNF 148
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 1 MSGEEEENAAELKIGDVF 18
MSGEEEENAAELKIGD F
Sbjct: 1 MSGEEEENAAELKIGDEF 18
>gi|340376921|ref|XP_003386979.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Amphimedon queenslandica]
Length = 139
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 21 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 71
L +++L +FE+ L NL P +EA ++PS++ R DD + ++L+D+
Sbjct: 84 LQKHKLHKFEVACLANLAPADADEAKTLLPSLQGR---FDDLELNELLDDI 131
>gi|384247187|gb|EIE20674.1| polymeras-like protein II polypeptide D [Coccomyxa subellipsoidea
C-169]
Length = 141
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 20 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK-TRG---RAHDDEAIEKMLNDLSLIK 75
+L ++ FEL + NL PET EEA ++PS+ T+G R DD ++ +L+D++ K
Sbjct: 81 VLDAGEMTGFELASVANLQPETAEEARILIPSLDATQGDEPRFSDD-TLQIVLDDVATYK 139
Query: 76 K 76
+
Sbjct: 140 Q 140
>gi|401625213|gb|EJS43234.1| rpb4p [Saccharomyces arboricola H-6]
Length = 221
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+G V ++L L FE+ LG+L +T +EA ++PS+ + D+ +E++L +LS
Sbjct: 160 VGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKI---SDDDLERILKELS 215
>gi|302496231|ref|XP_003010118.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
gi|291173657|gb|EFE29478.1| hypothetical protein ARB_03624 [Arthroderma benhamiae CBS 112371]
Length = 163
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC + EEA +++PSI G D ++++L++L+
Sbjct: 100 IEAVERLLSAHTELEFFERSQLGSLCCDNAEEAKSLIPSI---GNKISDADLQELLDELT 156
Query: 73 LIKKF 77
++ F
Sbjct: 157 KLRNF 161
>gi|308502373|ref|XP_003113371.1| hypothetical protein CRE_25317 [Caenorhabditis remanei]
gi|308265672|gb|EFP09625.1| hypothetical protein CRE_25317 [Caenorhabditis remanei]
Length = 1614
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 18 FRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKM 67
F S+Y E C+ G CP+T+E A+ SI D+ IE M
Sbjct: 448 FTCTSQYHCRSNEHCIFGGCCPKTIELAVIKSESITMENNKKGDKIIEPM 497
>gi|242216811|ref|XP_002474210.1| predicted protein [Postia placenta Mad-698-R]
gi|220726628|gb|EED80571.1| predicted protein [Postia placenta Mad-698-R]
Length = 134
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
L +FE + NLCP EEA ++VPS+ DD+ + +L ++ ++KF+
Sbjct: 85 LTQFETAQIANLCPVDAEEAKSVVPSLV----KIDDDRLNALLVEIQTMRKFQ 133
>gi|261203243|ref|XP_002628835.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239586620|gb|EEQ69263.1| polymerase II polypeptide D [Ajellomyces dermatitidis SLH14081]
gi|239608342|gb|EEQ85329.1| polymerase II polypeptide D [Ajellomyces dermatitidis ER-3]
gi|327349543|gb|EGE78400.1| RNA polymerase Rpb4 family protein [Ajellomyces dermatitidis ATCC
18188]
Length = 152
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC EEA +++PSI G D ++++L++L+
Sbjct: 89 IEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQELLDELT 145
Query: 73 LIKKF 77
++ F
Sbjct: 146 KLRNF 150
>gi|340516575|gb|EGR46823.1| predicted protein [Trichoderma reesei QM6a]
Length = 142
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 17 VFRILSRYQ-LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIK 75
V R+LS ++ LA+FE LG+LC E +EA ++PS+ + DE ++ +L+++S ++
Sbjct: 84 VERLLSAHKNLAKFERAQLGSLCCENADEAKTLIPSLADKI---SDEDLQDLLDEISKLQ 140
>gi|240273524|gb|EER37044.1| polymerase II polypeptide D [Ajellomyces capsulatus H143]
gi|325087428|gb|EGC40738.1| polymerase II polypeptide D [Ajellomyces capsulatus H88]
Length = 152
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC EEA +++PSI G D ++++L++L+
Sbjct: 89 IEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQELLDELT 145
Query: 73 LIKKF 77
++ F
Sbjct: 146 KLRNF 150
>gi|295672311|ref|XP_002796702.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|225683260|gb|EEH21544.1| polymerase II polypeptide D [Paracoccidioides brasiliensis Pb03]
gi|226283682|gb|EEH39248.1| polymerase II polypeptide D [Paracoccidioides sp. 'lutzii' Pb01]
gi|226288266|gb|EEH43778.1| polymerase (RNA) II (DNA directed) polypeptide D [Paracoccidioides
brasiliensis Pb18]
Length = 152
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC EEA +++PSI G D ++++L++L+
Sbjct: 89 IEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQELLDELT 145
Query: 73 LIKKF 77
++ F
Sbjct: 146 KLRNF 150
>gi|225556416|gb|EEH04704.1| polymerase II polypeptide D [Ajellomyces capsulatus G186AR]
Length = 152
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC EEA +++PSI G D ++++L++L+
Sbjct: 89 IEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQELLDELT 145
Query: 73 LIKKF 77
++ F
Sbjct: 146 KLRNF 150
>gi|154284806|ref|XP_001543198.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406839|gb|EDN02380.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 152
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 14 IGDVFRILSRY-QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+LS + +L FE LG+LC EEA +++PSI G D ++++L++L+
Sbjct: 89 IEAVERLLSAHTELEFFERSQLGSLCCNDAEEAKSLIPSI---GNKISDTELQELLDELT 145
Query: 73 LIKKF 77
++ F
Sbjct: 146 KLRNF 150
>gi|45185936|ref|NP_983652.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|44981726|gb|AAS51476.1| ACR250Wp [Ashbya gossypii ATCC 10895]
gi|374106859|gb|AEY95768.1| FACR250Wp [Ashbya gossypii FDAG1]
Length = 192
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
V ++L+ L FE+ LG+L E +EA +VPS+ G DE +E++L +LS
Sbjct: 134 VTQLLASTGLHPFEIAQLGSLACEDADEAKTLVPSL---GNKISDEDLERILKELS 186
>gi|398409710|ref|XP_003856320.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
gi|339476205|gb|EGP91296.1| hypothetical protein MYCGRDRAFT_98518 [Zymoseptoria tritici IPO323]
Length = 159
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+ EFE L LC +T EEA +VPS++ G+ D+E ++ L+D+S ++ F
Sbjct: 109 IVEFERAQLATLCCDTAEEARTLVPSLE--GKIGDEE-LQAALDDISKLRDF 157
>gi|365981351|ref|XP_003667509.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
gi|343766275|emb|CCD22266.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
Length = 255
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 14 IGDVFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
+ V ++L L FE+ LG+L +T +EA +VPS+ + + DDE +E++L +LS
Sbjct: 194 VSAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLVPSLTS--KISDDE-LERILKELS 249
>gi|326434249|gb|EGD79819.1| hypothetical protein PTSG_10802 [Salpingoeca sp. ATCC 50818]
Length = 153
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+L +FE L NL PETVEEA A++P++ DD+ +E +L + + F
Sbjct: 103 RLHKFEEVQLINLAPETVEEAKALIPTLVR----VDDDILENVLQQIMAFRSF 151
>gi|50302645|ref|XP_451258.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640389|emb|CAH02846.1| KLLA0A05797p [Kluyveromyces lactis]
Length = 200
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
V ++LS L FE+ LG+L E +EA ++PS+ G DE +E++L +LS
Sbjct: 142 VSQLLSSTGLHPFEVAQLGSLSCEDADEAKTLIPSL---GTKISDEDLERILKELS 194
>gi|255716330|ref|XP_002554446.1| KLTH0F05544p [Lachancea thermotolerans]
gi|238935829|emb|CAR24009.1| KLTH0F05544p [Lachancea thermotolerans CBS 6340]
Length = 197
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 17 VFRILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
V ++L L FE+ LG+L E +EA ++PS+ G DE +E++L +LS
Sbjct: 139 VTQLLQSTNLHPFEIAQLGSLSCEDADEAKTLIPSL---GNKISDEDLERILKELS 191
>gi|451849491|gb|EMD62794.1| hypothetical protein COCSADRAFT_92778 [Cochliobolus sativus ND90Pr]
Length = 177
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 25 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 78
+++ E +LG L P+T EEAI ++PS+K D++ ++ +L++L+ +++ E
Sbjct: 120 EISVVEKALLGTLTPDTAEEAITLIPSLKM-----DEDELQLILDELNKMRELE 168
>gi|449297580|gb|EMC93598.1| hypothetical protein BAUCODRAFT_125443 [Baudoinia compniacensis
UAMH 10762]
Length = 161
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 77
+ FE L LC +T EEA ++PS++ G+ DDE +++ L+++S ++ F
Sbjct: 112 VTNFERAQLATLCCDTAEEAKTLIPSLE--GKLDDDE-LQRALDEISKLRDF 160
>gi|405119928|gb|AFR94699.1| hypothetical protein CNAG_01444 [Cryptococcus neoformans var.
grubii H99]
Length = 152
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA-IEKMLNDLSLIKKF 77
L +FE+ + +L PE VE A+A++PS++ + ++EA ++ +L+D+ + ++
Sbjct: 96 LNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENEAQLQSLLDDVRAMVRY 148
>gi|46403032|gb|AAS92528.1| hypothetical protein [Cryptococcus gattii]
Length = 147
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA-IEKMLNDLSLIKKF 77
L +FE+ + +L PE VE A+A++PS++ + ++EA ++ +L+D+ + ++
Sbjct: 91 LNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENEAQLQSLLDDVRSMVRY 143
>gi|425765673|gb|EKV04342.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum PHI26]
gi|425783567|gb|EKV21411.1| Polymerase (RNA) II (DNA directed) polypeptide D [Penicillium
digitatum Pd1]
Length = 148
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+L S +L FE LG+LC + EEA +++PS++ + D ++++L++L+
Sbjct: 85 IKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKI---SDGDLQELLDELT 141
Query: 73 LIKKF 77
++ F
Sbjct: 142 KLRNF 146
>gi|71000204|ref|XP_754810.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119492539|ref|XP_001263635.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|66852447|gb|EAL92772.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus Af293]
gi|119411795|gb|EAW21738.1| polymerase (RNA) II (DNA directed) polypeptide D [Neosartorya
fischeri NRRL 181]
gi|159127819|gb|EDP52934.1| polymerase (RNA) II (DNA directed) polypeptide D [Aspergillus
fumigatus A1163]
Length = 148
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+L S +L FE LG+LC + EEA +++PS++ + D ++++L++L+
Sbjct: 85 IKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQHKI---SDADLQELLDELT 141
Query: 73 LIKKF 77
++ F
Sbjct: 142 KLRNF 146
>gi|134110404|ref|XP_776029.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258697|gb|EAL21382.1| hypothetical protein CNBD0780 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 152
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 26 LAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEA-IEKMLNDLSLIKKF 77
L +FE+ + +L PE VE A+A++PS++ + ++EA ++ +L+D+ + ++
Sbjct: 96 LNKFEIAQIMSLRPERVEVAVALIPSLERYAQGDENEAQLQSLLDDVRSMVRY 148
>gi|255944811|ref|XP_002563173.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587908|emb|CAP85974.1| Pc20g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 148
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 14 IGDVFRIL-SRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 72
I V R+L S +L FE LG+LC + EEA +++PS++ + D ++++L++L+
Sbjct: 85 IKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIPSLQNKI---SDGDLQELLDELT 141
Query: 73 LIKKF 77
++ F
Sbjct: 142 KLRNF 146
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,081,440,608
Number of Sequences: 23463169
Number of extensions: 32923720
Number of successful extensions: 76527
Number of sequences better than 100.0: 292
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 76233
Number of HSP's gapped (non-prelim): 353
length of query: 78
length of database: 8,064,228,071
effective HSP length: 49
effective length of query: 29
effective length of database: 6,914,532,790
effective search space: 200521450910
effective search space used: 200521450910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)