Query 042491
Match_columns 266
No_of_seqs 123 out of 1369
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 4E-46 1.4E-50 336.9 20.8 242 12-265 7-259 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 9.2E-44 3.1E-48 322.7 26.2 256 6-265 13-274 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 3.7E-42 1.3E-46 312.5 25.2 256 6-265 14-276 (368)
4 3lst_A CALO1 methyltransferase 100.0 2.5E-42 8.4E-47 311.2 21.9 244 5-265 14-262 (348)
5 1fp2_A Isoflavone O-methyltran 100.0 6.7E-42 2.3E-46 308.8 23.3 252 6-265 9-261 (352)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 9.2E-42 3.1E-46 308.5 22.3 254 8-265 5-266 (358)
7 3gwz_A MMCR; methyltransferase 100.0 2E-41 6.8E-46 307.7 21.3 244 6-265 31-283 (369)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 8E-41 2.8E-45 303.9 24.8 259 3-265 12-282 (372)
9 3i53_A O-methyltransferase; CO 100.0 8.2E-42 2.8E-46 305.7 13.2 236 14-265 6-250 (332)
10 2ip2_A Probable phenazine-spec 100.0 6.3E-40 2.2E-44 293.4 20.4 234 12-265 7-248 (334)
11 3dp7_A SAM-dependent methyltra 100.0 3E-39 1E-43 292.8 16.0 239 6-265 8-263 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.7E-37 5.8E-42 281.5 14.3 239 11-265 14-263 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 9.7E-37 3.3E-41 275.3 16.7 236 14-265 20-264 (360)
14 1x19_A CRTF-related protein; m 100.0 4.5E-36 1.5E-40 271.2 19.5 231 7-265 24-271 (359)
15 3mcz_A O-methyltransferase; ad 100.0 1.2E-35 4.2E-40 267.4 17.7 232 7-265 18-263 (352)
16 2r3s_A Uncharacterized protein 100.0 1.3E-35 4.4E-40 265.1 17.3 228 15-265 8-247 (335)
17 2qm3_A Predicted methyltransfe 99.3 4.7E-12 1.6E-16 114.6 11.1 187 37-261 47-252 (373)
18 4gek_A TRNA (CMO5U34)-methyltr 99.1 6.7E-10 2.3E-14 95.6 11.0 75 190-264 68-153 (261)
19 3dtn_A Putative methyltransfer 99.0 1.9E-09 6.5E-14 90.3 9.6 85 180-265 33-124 (234)
20 1ve3_A Hypothetical protein PH 98.9 1.7E-09 5.8E-14 89.9 7.6 71 192-264 38-117 (227)
21 3ege_A Putative methyltransfer 98.9 5.2E-09 1.8E-13 89.5 10.8 81 181-265 25-109 (261)
22 3dlc_A Putative S-adenosyl-L-m 98.9 2.7E-09 9.2E-14 87.9 7.6 82 180-265 34-126 (219)
23 1vl5_A Unknown conserved prote 98.9 2.7E-09 9.3E-14 90.9 7.3 83 179-265 26-118 (260)
24 2qe6_A Uncharacterized protein 98.9 1.2E-08 4E-13 88.4 10.8 74 192-265 77-172 (274)
25 1nkv_A Hypothetical protein YJ 98.9 9E-09 3.1E-13 87.2 9.6 82 181-265 27-118 (256)
26 2o57_A Putative sarcosine dime 98.8 1.2E-08 4E-13 88.7 9.8 83 180-265 68-165 (297)
27 3bus_A REBM, methyltransferase 98.8 1.6E-08 5.4E-13 86.6 10.4 84 179-265 50-144 (273)
28 4hg2_A Methyltransferase type 98.8 9.1E-09 3.1E-13 88.3 8.6 71 192-264 39-113 (257)
29 3dh0_A SAM dependent methyltra 98.8 6.3E-09 2.1E-13 86.1 7.3 83 181-265 28-121 (219)
30 3ou2_A SAM-dependent methyltra 98.8 2.1E-08 7.1E-13 82.6 9.8 82 181-265 36-122 (218)
31 1xxl_A YCGJ protein; structura 98.8 1.4E-08 4.6E-13 85.7 8.7 83 179-265 10-102 (239)
32 2p35_A Trans-aconitate 2-methy 98.8 1.1E-08 3.7E-13 86.8 7.9 83 181-265 24-110 (259)
33 3g5l_A Putative S-adenosylmeth 98.8 1.7E-08 5.9E-13 85.5 9.0 82 181-265 35-123 (253)
34 3mgg_A Methyltransferase; NYSG 98.8 1.3E-08 4.4E-13 87.4 8.3 76 190-265 35-120 (276)
35 3vc1_A Geranyl diphosphate 2-C 98.8 4E-08 1.4E-12 86.2 11.6 92 171-264 97-199 (312)
36 3gu3_A Methyltransferase; alph 98.8 1.2E-08 4.1E-13 88.4 8.1 76 190-265 20-104 (284)
37 3jwg_A HEN1, methyltransferase 98.8 8.9E-09 3.1E-13 85.4 6.6 74 191-264 28-116 (219)
38 3jwh_A HEN1; methyltransferase 98.8 1.5E-08 5.1E-13 84.0 7.8 74 191-264 28-116 (217)
39 3hem_A Cyclopropane-fatty-acyl 98.7 2.9E-08 9.9E-13 86.6 9.5 82 180-265 62-152 (302)
40 3ujc_A Phosphoethanolamine N-m 98.7 2.3E-08 7.7E-13 85.0 8.3 81 180-263 45-133 (266)
41 3f4k_A Putative methyltransfer 98.7 3.4E-08 1.2E-12 83.7 9.3 80 182-263 37-127 (257)
42 3hnr_A Probable methyltransfer 98.7 1.8E-08 6E-13 83.4 6.8 73 191-265 44-121 (220)
43 3ccf_A Cyclopropane-fatty-acyl 98.7 3E-08 1E-12 85.4 8.3 81 181-265 48-132 (279)
44 3kkz_A Uncharacterized protein 98.7 4.2E-08 1.4E-12 83.9 8.9 73 190-263 44-127 (267)
45 1xtp_A LMAJ004091AAA; SGPP, st 98.7 1.3E-08 4.5E-13 86.0 5.5 82 180-264 83-172 (254)
46 3bkw_A MLL3908 protein, S-aden 98.7 3.5E-08 1.2E-12 82.7 7.9 82 181-265 34-122 (243)
47 3pfg_A N-methyltransferase; N, 98.7 4.6E-08 1.6E-12 83.4 8.7 72 191-264 49-125 (263)
48 3g07_A 7SK snRNA methylphospha 98.7 2.1E-08 7.1E-13 87.4 6.2 43 190-232 44-87 (292)
49 3g5t_A Trans-aconitate 3-methy 98.7 5.9E-08 2E-12 84.5 8.6 73 191-263 35-126 (299)
50 3ocj_A Putative exported prote 98.7 1.1E-08 3.7E-13 89.5 3.8 76 190-265 116-202 (305)
51 3e05_A Precorrin-6Y C5,15-meth 98.7 1.2E-07 3.9E-12 77.8 9.7 80 181-262 31-120 (204)
52 3l8d_A Methyltransferase; stru 98.7 5.1E-08 1.8E-12 81.7 7.8 73 191-265 52-131 (242)
53 1kpg_A CFA synthase;, cyclopro 98.6 9.3E-08 3.2E-12 82.5 9.4 81 180-264 54-143 (287)
54 2yqz_A Hypothetical protein TT 98.6 1E-07 3.4E-12 80.9 9.2 74 190-265 37-119 (263)
55 2p7i_A Hypothetical protein; p 98.6 3.3E-08 1.1E-12 82.8 5.9 72 192-265 42-118 (250)
56 3dli_A Methyltransferase; PSI- 98.6 7.7E-08 2.6E-12 80.9 7.9 80 180-264 30-115 (240)
57 3bkx_A SAM-dependent methyltra 98.6 5.9E-08 2E-12 83.1 7.2 83 181-265 34-137 (275)
58 1pjz_A Thiopurine S-methyltran 98.6 4.4E-08 1.5E-12 80.7 6.0 73 190-264 20-115 (203)
59 3hm2_A Precorrin-6Y C5,15-meth 98.6 7.6E-08 2.6E-12 76.7 7.1 78 182-262 17-106 (178)
60 2xvm_A Tellurite resistance pr 98.6 1.3E-07 4.4E-12 76.6 8.3 79 182-264 24-111 (199)
61 1jg1_A PIMT;, protein-L-isoasp 98.6 4.1E-08 1.4E-12 82.6 5.2 83 179-264 80-172 (235)
62 4fsd_A Arsenic methyltransfera 98.6 9E-08 3.1E-12 86.6 7.5 74 192-265 83-181 (383)
63 3ofk_A Nodulation protein S; N 98.6 1.1E-07 3.9E-12 78.3 7.4 74 190-265 49-129 (216)
64 3i9f_A Putative type 11 methyl 98.6 2.9E-08 9.8E-13 78.9 3.6 77 183-265 10-90 (170)
65 3uwp_A Histone-lysine N-methyl 98.6 9.1E-08 3.1E-12 86.9 7.1 80 180-261 163-263 (438)
66 2fk8_A Methoxy mycolic acid sy 98.6 1.8E-07 6.3E-12 82.0 9.0 82 179-264 79-169 (318)
67 3q87_B N6 adenine specific DNA 98.6 2.2E-07 7.6E-12 74.3 8.6 67 192-264 23-92 (170)
68 3bxo_A N,N-dimethyltransferase 98.6 2.6E-07 8.8E-12 77.1 9.3 71 191-263 39-114 (239)
69 3kr9_A SAM-dependent methyltra 98.6 8.6E-08 2.9E-12 80.6 6.3 69 191-259 14-93 (225)
70 3h2b_A SAM-dependent methyltra 98.5 6.3E-08 2.2E-12 79.1 5.3 70 193-264 42-116 (203)
71 3cgg_A SAM-dependent methyltra 98.5 2.1E-07 7.3E-12 74.8 8.1 72 191-264 45-122 (195)
72 4htf_A S-adenosylmethionine-de 98.5 1.2E-07 3.9E-12 81.9 6.7 72 192-265 68-151 (285)
73 3fzg_A 16S rRNA methylase; met 98.5 8.1E-08 2.8E-12 78.4 5.0 70 191-262 48-127 (200)
74 3b3j_A Histone-arginine methyl 98.5 4.7E-07 1.6E-11 84.4 10.6 82 179-263 147-237 (480)
75 3ggd_A SAM-dependent methyltra 98.5 9E-08 3.1E-12 80.6 5.1 73 190-264 54-138 (245)
76 3sm3_A SAM-dependent methyltra 98.5 2.3E-07 7.9E-12 77.1 7.5 73 191-265 29-116 (235)
77 3m70_A Tellurite resistance pr 98.5 2.1E-07 7.2E-12 80.3 7.3 80 181-264 111-198 (286)
78 1nv8_A HEMK protein; class I a 98.5 1.8E-07 6.2E-12 81.3 6.8 65 192-257 123-199 (284)
79 3lcc_A Putative methyl chlorid 98.5 1.2E-07 4E-12 79.5 5.2 69 194-264 68-146 (235)
80 1wzn_A SAM-dependent methyltra 98.5 1.1E-06 3.6E-11 74.2 11.2 71 191-263 40-119 (252)
81 3lec_A NADB-rossmann superfami 98.5 2E-07 6.8E-12 78.5 6.3 69 191-259 20-99 (230)
82 2yxe_A Protein-L-isoaspartate 98.5 4.5E-07 1.5E-11 74.7 8.4 81 182-264 69-160 (215)
83 3lbf_A Protein-L-isoaspartate 98.5 5.1E-07 1.7E-11 74.1 8.5 80 182-265 69-158 (210)
84 4dcm_A Ribosomal RNA large sub 98.4 3.5E-07 1.2E-11 82.6 8.0 79 182-262 214-304 (375)
85 3gnl_A Uncharacterized protein 98.4 2.1E-07 7.3E-12 79.0 6.1 69 191-259 20-99 (244)
86 3cc8_A Putative methyltransfer 98.4 4.1E-07 1.4E-11 75.2 7.5 80 180-265 23-108 (230)
87 1af7_A Chemotaxis receptor met 98.4 2E-07 6.7E-12 80.7 5.7 74 192-265 105-228 (274)
88 1yzh_A TRNA (guanine-N(7)-)-me 98.4 4.7E-07 1.6E-11 74.8 7.6 68 192-259 41-120 (214)
89 2ex4_A Adrenal gland protein A 98.4 1.3E-07 4.6E-12 79.5 4.4 73 192-265 79-161 (241)
90 1yb2_A Hypothetical protein TA 98.4 3.1E-07 1E-11 79.2 6.7 74 181-256 101-185 (275)
91 3mb5_A SAM-dependent methyltra 98.4 4.7E-07 1.6E-11 76.7 7.8 74 181-256 84-168 (255)
92 1y8c_A S-adenosylmethionine-de 98.4 4.1E-07 1.4E-11 76.1 7.2 70 192-263 37-115 (246)
93 1jsx_A Glucose-inhibited divis 98.4 1.4E-07 4.9E-12 77.2 4.3 66 193-258 66-140 (207)
94 2pxx_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 74.5 6.9 71 191-262 41-119 (215)
95 4dzr_A Protein-(glutamine-N5) 98.4 1E-07 3.5E-12 78.0 3.2 76 181-257 20-108 (215)
96 3e8s_A Putative SAM dependent 98.4 5.1E-07 1.7E-11 74.5 7.5 80 181-265 43-130 (227)
97 2pjd_A Ribosomal RNA small sub 98.4 2.9E-07 9.9E-12 82.0 6.2 80 181-262 187-273 (343)
98 2b3t_A Protein methyltransfera 98.4 7.9E-07 2.7E-11 76.5 8.8 66 192-257 109-183 (276)
99 3e23_A Uncharacterized protein 98.4 2.5E-07 8.5E-12 76.1 5.3 73 190-264 41-116 (211)
100 2yxd_A Probable cobalt-precorr 98.4 3.5E-07 1.2E-11 72.9 5.8 74 182-259 27-109 (183)
101 3d2l_A SAM-dependent methyltra 98.4 5.5E-07 1.9E-11 75.3 7.2 69 192-263 33-110 (243)
102 2gs9_A Hypothetical protein TT 98.4 5.4E-07 1.8E-11 73.9 7.0 69 192-265 36-110 (211)
103 3g2m_A PCZA361.24; SAM-depende 98.4 3.9E-07 1.3E-11 79.2 6.5 81 179-264 72-165 (299)
104 3thr_A Glycine N-methyltransfe 98.4 1.7E-07 6E-12 81.0 4.2 73 191-265 56-146 (293)
105 3grz_A L11 mtase, ribosomal pr 98.4 7.4E-07 2.5E-11 72.9 7.7 71 191-262 59-137 (205)
106 2gb4_A Thiopurine S-methyltran 98.4 3.3E-07 1.1E-11 78.3 5.5 71 192-264 68-166 (252)
107 1dus_A MJ0882; hypothetical pr 98.4 1.1E-06 3.8E-11 70.5 8.3 78 181-262 43-131 (194)
108 2y1w_A Histone-arginine methyl 98.4 1E-06 3.5E-11 78.7 8.7 81 181-264 41-130 (348)
109 3njr_A Precorrin-6Y methylase; 98.4 1.4E-06 4.7E-11 71.8 8.9 74 182-259 47-131 (204)
110 3htx_A HEN1; HEN1, small RNA m 98.4 5.5E-07 1.9E-11 87.9 7.1 74 192-265 721-811 (950)
111 1vbf_A 231AA long hypothetical 98.3 1.4E-06 4.8E-11 72.5 8.6 80 181-264 61-148 (231)
112 3bgv_A MRNA CAP guanine-N7 met 98.3 1.9E-06 6.5E-11 75.4 9.5 96 164-263 9-127 (313)
113 3mq2_A 16S rRNA methyltransfer 98.3 1.8E-06 6.2E-11 71.3 8.8 66 190-255 25-103 (218)
114 1ri5_A MRNA capping enzyme; me 98.3 1.5E-06 5E-11 74.9 8.5 71 191-262 63-145 (298)
115 3ntv_A MW1564 protein; rossman 98.3 5.1E-07 1.8E-11 75.8 5.4 67 192-258 71-150 (232)
116 1ne2_A Hypothetical protein TA 98.3 6.7E-07 2.3E-11 73.0 5.9 72 191-264 50-124 (200)
117 2h00_A Methyltransferase 10 do 98.3 7.3E-07 2.5E-11 75.6 6.2 70 192-261 65-151 (254)
118 2p8j_A S-adenosylmethionine-de 98.3 6.8E-07 2.3E-11 73.1 5.8 73 191-264 22-103 (209)
119 1fbn_A MJ fibrillarin homologu 98.3 1.4E-06 4.9E-11 72.8 7.9 66 190-255 72-148 (230)
120 2fca_A TRNA (guanine-N(7)-)-me 98.3 7.9E-07 2.7E-11 73.7 6.1 66 192-257 38-115 (213)
121 3dxy_A TRNA (guanine-N(7)-)-me 98.3 8.2E-07 2.8E-11 74.1 5.9 66 192-257 34-112 (218)
122 3q7e_A Protein arginine N-meth 98.3 1.5E-06 5E-11 77.7 7.9 68 192-260 66-143 (349)
123 3gjy_A Spermidine synthase; AP 98.3 7E-07 2.4E-11 78.7 5.6 67 194-260 91-169 (317)
124 1vlm_A SAM-dependent methyltra 98.3 1.2E-06 4.2E-11 72.5 6.9 66 193-265 48-117 (219)
125 2plw_A Ribosomal RNA methyltra 98.3 3.1E-06 1.1E-10 68.8 8.9 76 182-262 13-118 (201)
126 3iv6_A Putative Zn-dependent a 98.3 1.1E-06 3.7E-11 75.5 6.0 81 180-264 35-124 (261)
127 3fpf_A Mtnas, putative unchara 98.3 1.4E-06 4.6E-11 76.1 6.6 70 190-259 120-197 (298)
128 2fyt_A Protein arginine N-meth 98.2 3.1E-06 1.1E-10 75.3 8.9 74 182-258 56-139 (340)
129 3g89_A Ribosomal RNA small sub 98.2 8.9E-07 3E-11 75.4 5.1 69 191-259 79-160 (249)
130 2aot_A HMT, histamine N-methyl 98.2 1.5E-06 5E-11 75.4 6.5 74 192-265 52-150 (292)
131 1dl5_A Protein-L-isoaspartate 98.2 2.6E-06 8.7E-11 75.0 8.0 81 181-263 66-157 (317)
132 2ozv_A Hypothetical protein AT 98.2 2.2E-06 7.5E-11 73.3 7.0 68 190-257 34-122 (260)
133 1o9g_A RRNA methyltransferase; 98.2 1.5E-06 5E-11 73.6 5.8 71 192-262 51-180 (250)
134 1l3i_A Precorrin-6Y methyltran 98.2 1.5E-06 5.1E-11 69.6 5.6 77 182-262 25-112 (192)
135 3mti_A RRNA methylase; SAM-dep 98.2 3.2E-06 1.1E-10 67.8 7.3 66 190-257 20-96 (185)
136 2gpy_A O-methyltransferase; st 98.2 1.4E-06 4.7E-11 72.9 5.2 71 192-262 54-138 (233)
137 2pwy_A TRNA (adenine-N(1)-)-me 98.2 3.3E-06 1.1E-10 71.3 7.6 74 181-256 87-172 (258)
138 1xdz_A Methyltransferase GIDB; 98.2 1E-06 3.4E-11 74.2 4.3 69 191-259 69-150 (240)
139 1zq9_A Probable dimethyladenos 98.2 3E-06 1E-10 73.5 7.3 74 180-257 18-100 (285)
140 3ckk_A TRNA (guanine-N(7)-)-me 98.2 2.5E-06 8.5E-11 72.0 6.6 67 191-257 45-130 (235)
141 3r0q_C Probable protein argini 98.2 3.4E-06 1.2E-10 76.1 7.9 72 190-262 61-141 (376)
142 1o54_A SAM-dependent O-methylt 98.2 2.6E-06 9E-11 73.2 6.8 74 181-256 103-187 (277)
143 1g6q_1 HnRNP arginine N-methyl 98.2 2.7E-06 9.2E-11 75.3 7.0 68 192-260 38-115 (328)
144 3u81_A Catechol O-methyltransf 98.2 1.6E-06 5.4E-11 72.0 5.0 72 192-263 58-147 (221)
145 3adn_A Spermidine synthase; am 98.2 1.5E-06 5.2E-11 75.9 5.1 67 191-257 82-164 (294)
146 1ej0_A FTSJ; methyltransferase 98.2 7.2E-06 2.5E-10 64.4 8.7 77 182-263 13-101 (180)
147 1u2z_A Histone-lysine N-methyl 98.2 4.5E-06 1.5E-10 76.6 8.2 79 181-261 233-334 (433)
148 3tfw_A Putative O-methyltransf 98.2 1E-06 3.5E-11 74.8 3.6 67 192-258 63-144 (248)
149 2fhp_A Methylase, putative; al 98.1 1.8E-06 6.1E-11 69.2 4.9 70 191-261 43-127 (187)
150 2bm8_A Cephalosporin hydroxyla 98.1 3.3E-06 1.1E-10 71.2 6.7 66 193-258 82-160 (236)
151 3m33_A Uncharacterized protein 98.1 3.1E-06 1.1E-10 70.5 6.5 65 191-257 47-118 (226)
152 3lpm_A Putative methyltransfer 98.1 2.4E-06 8.2E-11 72.8 5.9 67 190-257 46-126 (259)
153 2vdv_E TRNA (guanine-N(7)-)-me 98.1 2.6E-06 9E-11 72.0 6.0 65 191-255 48-133 (246)
154 3frh_A 16S rRNA methylase; met 98.1 3.2E-06 1.1E-10 71.5 6.4 69 191-262 104-180 (253)
155 2esr_A Methyltransferase; stru 98.1 1E-06 3.5E-11 70.3 3.3 69 191-260 30-110 (177)
156 4hc4_A Protein arginine N-meth 98.1 4.6E-06 1.6E-10 75.2 7.8 63 193-256 84-155 (376)
157 2zfu_A Nucleomethylin, cerebra 98.1 4E-06 1.4E-10 68.9 6.8 58 191-261 66-126 (215)
158 1qam_A ERMC' methyltransferase 98.1 3.9E-06 1.3E-10 71.1 6.9 76 179-258 19-101 (244)
159 3duw_A OMT, O-methyltransferas 98.1 9.7E-07 3.3E-11 73.2 3.0 68 192-259 58-142 (223)
160 3gdh_A Trimethylguanosine synt 98.1 1E-06 3.5E-11 73.9 3.2 71 192-264 78-158 (241)
161 1m6y_A S-adenosyl-methyltransf 98.1 3.1E-06 1.1E-10 74.1 6.4 74 181-256 17-104 (301)
162 3gru_A Dimethyladenosine trans 98.1 5.5E-06 1.9E-10 72.3 7.9 74 180-257 40-121 (295)
163 1ws6_A Methyltransferase; stru 98.1 1.2E-06 4E-11 69.2 3.1 68 192-261 41-121 (171)
164 1p91_A Ribosomal RNA large sub 98.1 3.6E-06 1.2E-10 71.7 6.2 68 192-259 85-157 (269)
165 1nt2_A Fibrillarin-like PRE-rR 98.1 4.8E-06 1.6E-10 68.9 6.7 68 190-257 55-133 (210)
166 3p2e_A 16S rRNA methylase; met 98.1 3.3E-06 1.1E-10 70.7 5.8 67 192-259 24-103 (225)
167 3eey_A Putative rRNA methylase 98.1 2.4E-06 8.1E-11 69.3 4.7 71 190-260 20-103 (197)
168 2pbf_A Protein-L-isoaspartate 98.1 1.2E-05 4.2E-10 66.6 9.2 74 190-263 78-175 (227)
169 3p9n_A Possible methyltransfer 98.1 3.8E-06 1.3E-10 67.8 5.7 70 192-262 44-125 (189)
170 3tma_A Methyltransferase; thum 98.1 4.9E-06 1.7E-10 74.3 6.7 76 180-257 193-279 (354)
171 3orh_A Guanidinoacetate N-meth 98.1 1.4E-06 4.9E-11 73.4 3.0 64 192-256 60-134 (236)
172 3tr6_A O-methyltransferase; ce 98.1 1.7E-06 5.9E-11 71.7 3.2 68 192-259 64-149 (225)
173 3lcv_B Sisomicin-gentamicin re 98.1 2.1E-06 7.2E-11 73.3 3.7 73 191-263 131-211 (281)
174 2ipx_A RRNA 2'-O-methyltransfe 98.1 4.3E-06 1.5E-10 69.9 5.5 68 190-257 75-154 (233)
175 1iy9_A Spermidine synthase; ro 98.0 3.6E-06 1.2E-10 72.7 5.0 67 192-258 75-156 (275)
176 3dr5_A Putative O-methyltransf 98.0 5.2E-06 1.8E-10 69.3 5.9 67 194-260 58-139 (221)
177 1g8a_A Fibrillarin-like PRE-rR 98.0 1.1E-05 3.9E-10 66.9 7.8 69 190-258 71-151 (227)
178 3evz_A Methyltransferase; NYSG 98.0 8.7E-06 3E-10 67.6 7.0 71 190-261 53-134 (230)
179 2avn_A Ubiquinone/menaquinone 98.0 5.2E-06 1.8E-10 70.5 5.6 69 192-263 54-127 (260)
180 1r18_A Protein-L-isoaspartate( 98.0 6.4E-06 2.2E-10 68.5 6.0 74 190-263 82-176 (227)
181 2kw5_A SLR1183 protein; struct 98.0 8.4E-06 2.9E-10 66.2 6.6 61 195-257 32-101 (202)
182 2h1r_A Dimethyladenosine trans 98.0 6.1E-06 2.1E-10 72.1 6.0 74 180-257 32-113 (299)
183 2avd_A Catechol-O-methyltransf 98.0 2.5E-06 8.5E-11 70.9 3.1 68 191-258 68-153 (229)
184 4e2x_A TCAB9; kijanose, tetron 98.0 7.7E-06 2.6E-10 74.4 6.6 82 179-265 96-186 (416)
185 2frn_A Hypothetical protein PH 98.0 6.2E-06 2.1E-10 71.2 5.6 65 192-257 125-199 (278)
186 3bwc_A Spermidine synthase; SA 98.0 3.3E-06 1.1E-10 73.9 3.9 73 191-263 94-182 (304)
187 2hnk_A SAM-dependent O-methylt 98.0 4.8E-06 1.6E-10 69.9 4.7 70 192-261 60-158 (239)
188 1i1n_A Protein-L-isoaspartate 98.0 1.7E-05 5.9E-10 65.6 8.0 74 190-263 75-164 (226)
189 2nxc_A L11 mtase, ribosomal pr 98.0 2.9E-06 1E-10 72.2 3.3 68 191-260 119-194 (254)
190 3c3p_A Methyltransferase; NP_9 98.0 2.8E-06 9.7E-11 69.8 3.1 66 192-257 56-133 (210)
191 3ftd_A Dimethyladenosine trans 98.0 1.8E-05 6.3E-10 67.3 8.1 76 180-258 21-102 (249)
192 1zx0_A Guanidinoacetate N-meth 98.0 3.3E-06 1.1E-10 70.7 3.4 67 192-259 60-138 (236)
193 3giw_A Protein of unknown func 98.0 3E-05 1E-09 66.8 9.5 74 192-265 78-175 (277)
194 1i9g_A Hypothetical protein RV 98.0 1.3E-05 4.4E-10 68.7 7.1 74 181-256 90-177 (280)
195 2i62_A Nicotinamide N-methyltr 98.0 6.6E-06 2.2E-10 69.6 5.1 70 191-261 55-168 (265)
196 2yvl_A TRMI protein, hypotheti 98.0 2.2E-05 7.4E-10 65.8 8.3 72 181-256 82-164 (248)
197 3r3h_A O-methyltransferase, SA 98.0 2E-06 6.9E-11 72.8 1.8 68 192-259 60-145 (242)
198 2ift_A Putative methylase HI07 98.0 4.9E-06 1.7E-10 68.2 4.0 68 193-261 54-136 (201)
199 3fut_A Dimethyladenosine trans 98.0 1.3E-05 4.3E-10 69.2 6.7 70 181-255 38-115 (271)
200 2cmg_A Spermidine synthase; tr 98.0 1.4E-05 4.9E-10 68.5 7.0 64 192-257 72-146 (262)
201 2b25_A Hypothetical protein; s 97.9 1.6E-05 5.5E-10 70.3 7.5 74 182-257 97-194 (336)
202 4azs_A Methyltransferase WBDD; 97.9 1.5E-05 5.2E-10 75.6 7.8 71 191-263 65-147 (569)
203 3bzb_A Uncharacterized protein 97.9 1.8E-05 6.3E-10 68.3 7.4 73 191-264 78-177 (281)
204 3a27_A TYW2, uncharacterized p 97.9 1E-05 3.4E-10 69.7 5.7 69 190-258 117-194 (272)
205 3tm4_A TRNA (guanine N2-)-meth 97.9 6.6E-06 2.3E-10 74.1 4.6 67 191-257 216-293 (373)
206 1wy7_A Hypothetical protein PH 97.9 2.2E-05 7.5E-10 64.0 7.3 71 192-264 49-126 (207)
207 3dou_A Ribosomal RNA large sub 97.9 2.7E-05 9.4E-10 63.3 7.7 70 181-257 15-98 (191)
208 1xj5_A Spermidine synthase 1; 97.9 7.7E-06 2.6E-10 72.6 4.7 67 191-257 119-201 (334)
209 2pt6_A Spermidine synthase; tr 97.9 4.8E-06 1.7E-10 73.5 3.3 67 192-258 116-197 (321)
210 2vdw_A Vaccinia virus capping 97.9 3.2E-05 1.1E-09 67.6 8.5 70 192-262 48-141 (302)
211 3uzu_A Ribosomal RNA small sub 97.9 7.8E-06 2.7E-10 70.8 4.5 68 181-250 33-106 (279)
212 2ih2_A Modification methylase 97.9 2.4E-05 8.2E-10 71.0 7.8 63 192-257 39-105 (421)
213 3tqs_A Ribosomal RNA small sub 97.9 1.3E-05 4.5E-10 68.4 5.7 66 180-249 19-90 (255)
214 3k0b_A Predicted N6-adenine-sp 97.9 1.9E-05 6.5E-10 71.7 7.0 75 181-257 192-314 (393)
215 1sui_A Caffeoyl-COA O-methyltr 97.9 4.6E-06 1.6E-10 70.8 2.7 67 192-258 79-164 (247)
216 3dmg_A Probable ribosomal RNA 97.9 2.9E-05 1E-09 70.1 8.1 69 192-262 233-310 (381)
217 2fpo_A Methylase YHHF; structu 97.9 1E-05 3.5E-10 66.3 4.6 68 193-261 55-133 (202)
218 2o07_A Spermidine synthase; st 97.9 9.1E-06 3.1E-10 71.2 4.5 68 191-258 94-176 (304)
219 2nyu_A Putative ribosomal RNA 97.9 3.7E-05 1.3E-09 61.9 7.9 74 182-260 13-107 (196)
220 2i7c_A Spermidine synthase; tr 97.9 7.6E-06 2.6E-10 70.9 3.9 68 191-258 77-159 (283)
221 1inl_A Spermidine synthase; be 97.9 8.5E-06 2.9E-10 71.1 4.1 66 192-257 90-170 (296)
222 1mjf_A Spermidine synthase; sp 97.9 8.4E-06 2.9E-10 70.5 3.9 67 192-259 75-161 (281)
223 1uir_A Polyamine aminopropyltr 97.9 9.5E-06 3.2E-10 71.4 4.2 71 192-262 77-163 (314)
224 3ldu_A Putative methylase; str 97.8 1.8E-05 6.2E-10 71.6 6.1 75 181-257 186-308 (385)
225 3c3y_A Pfomt, O-methyltransfer 97.8 7.5E-06 2.6E-10 68.9 2.9 67 192-258 70-155 (237)
226 3ldg_A Putative uncharacterize 97.8 3.2E-05 1.1E-09 70.0 7.1 75 181-257 185-307 (384)
227 2b2c_A Spermidine synthase; be 97.8 8.2E-06 2.8E-10 71.9 3.0 67 192-258 108-189 (314)
228 3cbg_A O-methyltransferase; cy 97.8 6.7E-06 2.3E-10 68.9 2.2 68 192-259 72-157 (232)
229 1uwv_A 23S rRNA (uracil-5-)-me 97.8 5.6E-05 1.9E-09 69.3 8.1 72 181-256 277-362 (433)
230 2g72_A Phenylethanolamine N-me 97.7 2E-05 7E-10 67.9 4.5 70 192-262 71-186 (289)
231 2a14_A Indolethylamine N-methy 97.7 1E-05 3.4E-10 69.1 1.9 71 191-262 54-168 (263)
232 1yub_A Ermam, rRNA methyltrans 97.6 3.6E-05 1.2E-09 65.0 4.1 65 181-249 20-90 (245)
233 3o4f_A Spermidine synthase; am 97.6 0.0001 3.6E-09 64.0 6.8 66 191-256 82-163 (294)
234 1qyr_A KSGA, high level kasuga 97.6 6E-05 2E-09 64.2 4.8 67 179-249 10-82 (252)
235 4gqb_A Protein arginine N-meth 97.6 0.00012 4.2E-09 70.0 7.3 98 152-256 322-434 (637)
236 4df3_A Fibrillarin-like rRNA/T 97.6 0.00011 3.7E-09 61.9 6.0 68 190-257 75-154 (233)
237 2oxt_A Nucleoside-2'-O-methylt 97.5 0.00014 4.9E-09 62.3 7.0 66 190-259 72-149 (265)
238 2wa2_A Non-structural protein 97.5 0.00013 4.5E-09 62.9 6.6 66 190-259 80-157 (276)
239 1ixk_A Methyltransferase; open 97.5 7.6E-05 2.6E-09 65.5 5.0 67 190-256 116-193 (315)
240 2p41_A Type II methyltransfera 97.5 0.0001 3.5E-09 64.5 5.4 68 190-260 80-158 (305)
241 2f8l_A Hypothetical protein LM 97.5 0.00012 3.9E-09 65.0 5.8 71 192-262 130-213 (344)
242 3id6_C Fibrillarin-like rRNA/T 97.5 0.0004 1.4E-08 58.3 8.6 77 181-257 64-153 (232)
243 3k6r_A Putative transferase PH 97.5 0.00011 3.7E-09 63.5 5.1 66 191-257 124-199 (278)
244 3ajd_A Putative methyltransfer 97.4 0.00012 4.1E-09 62.9 4.8 68 190-257 81-163 (274)
245 2r6z_A UPF0341 protein in RSP 97.4 5E-05 1.7E-09 64.9 2.0 66 192-259 83-170 (258)
246 2yx1_A Hypothetical protein MJ 97.4 0.00017 5.8E-09 63.9 5.3 64 191-257 194-265 (336)
247 2igt_A SAM dependent methyltra 97.3 8.8E-05 3E-09 65.7 3.1 63 192-256 153-231 (332)
248 2k4m_A TR8_protein, UPF0146 pr 97.3 0.00018 6.1E-09 55.9 4.3 58 191-258 34-97 (153)
249 3sso_A Methyltransferase; macr 97.3 0.00032 1.1E-08 63.5 6.6 68 192-263 216-300 (419)
250 2qfm_A Spermine synthase; sper 97.3 0.00016 5.4E-09 64.6 4.5 66 191-257 187-274 (364)
251 2jjq_A Uncharacterized RNA met 97.3 0.00043 1.5E-08 63.3 7.4 63 192-257 290-360 (425)
252 2yxl_A PH0851 protein, 450AA l 97.3 0.00036 1.2E-08 64.2 6.7 67 190-256 257-336 (450)
253 2heo_A Z-DNA binding protein 1 97.3 6.7E-05 2.3E-09 50.5 1.2 55 35-101 12-66 (67)
254 2b78_A Hypothetical protein SM 97.1 0.00018 6.2E-09 64.9 2.8 64 192-256 212-291 (385)
255 3hp7_A Hemolysin, putative; st 97.1 0.00064 2.2E-08 59.0 6.1 79 181-262 75-163 (291)
256 3v97_A Ribosomal RNA large sub 97.1 0.00053 1.8E-08 66.6 6.2 75 181-257 181-310 (703)
257 3b73_A PHIH1 repressor-like pr 97.1 0.00025 8.5E-09 52.6 2.7 63 35-110 15-79 (111)
258 2oyr_A UPF0341 protein YHIQ; a 97.1 0.00031 1.1E-08 60.0 3.4 65 194-260 90-174 (258)
259 3mq0_A Transcriptional repress 97.0 0.00041 1.4E-08 59.7 3.7 57 36-104 33-89 (275)
260 3ll7_A Putative methyltransfer 97.0 0.00036 1.2E-08 63.5 3.4 63 192-256 93-169 (410)
261 1y0u_A Arsenical resistance op 97.0 0.00096 3.3E-08 47.7 5.1 62 28-105 26-87 (96)
262 2as0_A Hypothetical protein PH 97.0 0.00026 8.7E-09 64.0 2.3 64 192-256 217-295 (396)
263 3ua3_A Protein arginine N-meth 97.0 0.00094 3.2E-08 64.3 6.1 97 152-256 377-501 (745)
264 3bt7_A TRNA (uracil-5-)-methyl 96.9 0.00079 2.7E-08 60.3 5.2 52 193-246 214-272 (369)
265 3ech_A MEXR, multidrug resista 96.9 0.0017 5.9E-08 49.4 6.5 96 6-108 5-105 (142)
266 2okc_A Type I restriction enzy 96.9 0.00079 2.7E-08 61.8 5.3 69 191-259 170-262 (445)
267 1sqg_A SUN protein, FMU protei 96.9 0.0013 4.4E-08 60.1 6.6 67 190-256 244-321 (429)
268 1wg8_A Predicted S-adenosylmet 96.9 0.0014 4.8E-08 56.4 6.0 74 179-256 11-95 (285)
269 1wxx_A TT1595, hypothetical pr 96.9 0.00036 1.2E-08 62.8 2.2 63 192-256 209-285 (382)
270 3c0k_A UPF0064 protein YCCW; P 96.8 0.00039 1.3E-08 62.8 2.2 65 192-257 220-300 (396)
271 1xmk_A Double-stranded RNA-spe 96.8 0.0006 2.1E-08 47.3 2.3 61 35-106 13-74 (79)
272 3m6w_A RRNA methylase; rRNA me 96.6 0.0014 4.6E-08 60.7 4.3 66 190-256 99-176 (464)
273 2frx_A Hypothetical protein YE 96.6 0.0034 1.1E-07 58.3 6.8 65 192-256 117-193 (479)
274 4dmg_A Putative uncharacterize 96.6 0.0018 6E-08 58.6 4.7 63 192-256 214-286 (393)
275 3pqk_A Biofilm growth-associat 96.5 0.0016 5.4E-08 47.0 3.4 65 28-103 18-82 (102)
276 1qbj_A Protein (double-strande 96.5 0.0013 4.4E-08 45.9 2.3 65 34-108 11-77 (81)
277 2xyq_A Putative 2'-O-methyl tr 96.5 0.0034 1.2E-07 54.4 5.6 60 190-257 61-130 (290)
278 2b9e_A NOL1/NOP2/SUN domain fa 96.4 0.0067 2.3E-07 53.0 7.3 67 190-256 100-180 (309)
279 2dul_A N(2),N(2)-dimethylguano 96.4 0.0018 6.1E-08 58.3 3.6 64 193-256 48-137 (378)
280 3opn_A Putative hemolysin; str 96.4 0.0053 1.8E-07 51.3 6.3 38 192-230 37-75 (232)
281 3m4x_A NOL1/NOP2/SUN family pr 96.4 0.0019 6.5E-08 59.5 3.7 67 190-256 103-181 (456)
282 3v97_A Ribosomal RNA large sub 96.4 0.0018 6.2E-08 62.9 3.7 64 192-256 539-615 (703)
283 3r4k_A Transcriptional regulat 96.4 0.00058 2E-08 58.3 0.1 58 36-104 9-66 (260)
284 4auk_A Ribosomal RNA large sub 96.3 0.0042 1.4E-07 55.5 5.5 68 190-259 209-279 (375)
285 2hzt_A Putative HTH-type trans 96.3 0.002 6.7E-08 47.1 2.7 63 38-108 19-82 (107)
286 1mkm_A ICLR transcriptional re 96.3 0.0015 5.2E-08 55.2 2.3 57 36-104 11-67 (249)
287 2ld4_A Anamorsin; methyltransf 96.3 0.0017 5.8E-08 51.2 2.5 58 190-263 10-76 (176)
288 1qgp_A Protein (double strande 96.3 0.0011 3.6E-08 45.8 1.0 58 35-102 16-75 (77)
289 3tka_A Ribosomal RNA small sub 96.3 0.011 3.6E-07 52.2 7.6 75 180-256 47-134 (347)
290 2xrn_A HTH-type transcriptiona 96.3 0.0013 4.6E-08 55.3 1.8 60 36-106 9-68 (241)
291 2oqg_A Possible transcriptiona 96.2 0.0012 3.9E-08 48.6 1.1 63 32-105 20-82 (114)
292 2g7u_A Transcriptional regulat 96.2 0.0016 5.5E-08 55.3 2.1 60 36-108 17-76 (257)
293 3bdd_A Regulatory protein MARR 96.2 0.01 3.4E-07 44.7 6.5 68 34-108 32-99 (142)
294 1ub9_A Hypothetical protein PH 96.2 0.0014 4.8E-08 46.7 1.5 71 28-105 11-81 (100)
295 3jth_A Transcription activator 96.2 0.0011 3.8E-08 47.4 0.9 65 28-103 18-82 (98)
296 1u2w_A CADC repressor, cadmium 96.2 0.0016 5.6E-08 48.8 1.8 69 26-104 35-103 (122)
297 4a5n_A Uncharacterized HTH-typ 96.1 0.0031 1E-07 48.1 2.9 79 13-108 15-94 (131)
298 3f6o_A Probable transcriptiona 96.1 0.0015 5E-08 48.7 1.0 67 27-104 12-78 (118)
299 3bja_A Transcriptional regulat 96.1 0.0061 2.1E-07 45.8 4.5 67 35-108 35-101 (139)
300 3cuo_A Uncharacterized HTH-typ 96.0 0.0017 5.8E-08 46.2 1.1 66 29-104 20-85 (99)
301 3nrv_A Putative transcriptiona 96.0 0.0038 1.3E-07 47.7 3.1 68 34-108 41-108 (148)
302 2ia2_A Putative transcriptiona 96.0 0.0017 5.7E-08 55.5 1.1 56 36-104 24-79 (265)
303 3df8_A Possible HXLR family tr 96.0 0.0025 8.4E-08 47.0 1.9 75 13-108 16-93 (111)
304 2gxg_A 146AA long hypothetical 96.0 0.012 4.2E-07 44.5 6.0 67 34-108 38-104 (146)
305 3b5i_A S-adenosyl-L-methionine 96.0 0.034 1.2E-06 49.8 9.6 73 192-264 52-164 (374)
306 3f3x_A Transcriptional regulat 96.0 0.0066 2.3E-07 46.1 4.4 67 34-108 38-104 (144)
307 3c6k_A Spermine synthase; sper 96.0 0.0037 1.3E-07 56.0 3.3 64 192-256 205-290 (381)
308 2o0y_A Transcriptional regulat 96.0 0.0021 7.3E-08 54.7 1.7 57 36-104 26-82 (260)
309 3axs_A Probable N(2),N(2)-dime 96.0 0.0023 7.9E-08 57.8 1.9 65 192-256 52-131 (392)
310 1r7j_A Conserved hypothetical 95.9 0.0042 1.4E-07 44.5 2.9 55 38-108 13-67 (95)
311 1z7u_A Hypothetical protein EF 95.9 0.0034 1.2E-07 46.2 2.3 63 38-108 27-90 (112)
312 3k0l_A Repressor protein; heli 95.9 0.0073 2.5E-07 47.0 4.4 67 35-108 48-114 (162)
313 2jsc_A Transcriptional regulat 95.9 0.002 7E-08 48.0 1.1 65 28-103 16-80 (118)
314 3cdh_A Transcriptional regulat 95.9 0.016 5.6E-07 44.5 6.4 67 35-108 45-111 (155)
315 1r1u_A CZRA, repressor protein 95.9 0.002 6.7E-08 47.0 0.9 64 29-103 22-85 (106)
316 2qww_A Transcriptional regulat 95.9 0.038 1.3E-06 42.2 8.4 67 35-108 43-111 (154)
317 3boq_A Transcriptional regulat 95.8 0.038 1.3E-06 42.5 8.3 68 35-108 49-116 (160)
318 2fu4_A Ferric uptake regulatio 95.8 0.0024 8.1E-08 44.3 1.1 48 35-88 19-72 (83)
319 2nyx_A Probable transcriptiona 95.8 0.017 5.9E-07 45.2 6.3 67 35-108 47-113 (168)
320 3fm5_A Transcriptional regulat 95.8 0.01 3.5E-07 45.4 4.9 69 34-108 40-108 (150)
321 2kko_A Possible transcriptiona 95.8 0.0012 4.1E-08 48.4 -0.6 61 32-103 24-84 (108)
322 3f6v_A Possible transcriptiona 95.8 0.0031 1.1E-07 49.2 1.7 68 26-104 51-118 (151)
323 3g3z_A NMB1585, transcriptiona 95.8 0.0066 2.3E-07 46.2 3.5 68 34-108 32-99 (145)
324 2hr3_A Probable transcriptiona 95.8 0.015 5.3E-07 44.1 5.6 70 33-108 35-104 (147)
325 3bj6_A Transcriptional regulat 95.7 0.029 9.9E-07 42.8 7.2 67 35-108 42-108 (152)
326 2f2e_A PA1607; transcription f 95.7 0.0069 2.4E-07 46.9 3.4 55 47-108 36-90 (146)
327 1yyv_A Putative transcriptiona 95.7 0.0051 1.7E-07 46.8 2.6 78 14-108 25-103 (131)
328 2fsw_A PG_0823 protein; alpha- 95.7 0.0041 1.4E-07 45.3 1.9 79 13-108 14-93 (107)
329 1oyi_A Double-stranded RNA-bin 95.7 0.0048 1.6E-07 42.9 2.1 60 33-104 17-76 (82)
330 1on2_A Transcriptional regulat 95.6 0.0061 2.1E-07 46.4 2.9 50 47-108 21-70 (142)
331 3jw4_A Transcriptional regulat 95.6 0.0086 2.9E-07 45.8 3.7 68 35-108 43-111 (148)
332 1s3j_A YUSO protein; structura 95.6 0.027 9.4E-07 43.0 6.5 67 35-108 39-105 (155)
333 3eco_A MEPR; mutlidrug efflux 95.6 0.0052 1.8E-07 46.4 2.3 69 34-108 32-101 (139)
334 2wte_A CSA3; antiviral protein 95.6 0.0047 1.6E-07 52.2 2.1 63 34-108 153-215 (244)
335 2bv6_A MGRA, HTH-type transcri 95.5 0.011 3.8E-07 44.7 4.0 68 34-108 38-105 (142)
336 2rdp_A Putative transcriptiona 95.5 0.031 1.1E-06 42.4 6.7 67 35-108 44-110 (150)
337 3oop_A LIN2960 protein; protei 95.5 0.0044 1.5E-07 47.1 1.7 68 34-108 38-105 (143)
338 2jt1_A PEFI protein; solution 95.5 0.0034 1.2E-07 43.2 1.0 45 38-88 9-58 (77)
339 3kp7_A Transcriptional regulat 95.5 0.05 1.7E-06 41.5 7.6 66 35-108 40-107 (151)
340 2efj_A 3,7-dimethylxanthine me 95.5 0.026 8.9E-07 50.7 6.7 70 193-262 53-161 (384)
341 3bro_A Transcriptional regulat 95.4 0.0084 2.9E-07 45.2 3.0 68 35-108 36-104 (141)
342 3e6m_A MARR family transcripti 95.4 0.025 8.6E-07 43.8 5.8 67 35-108 55-121 (161)
343 3deu_A Transcriptional regulat 95.4 0.0062 2.1E-07 47.9 2.1 68 35-108 55-122 (166)
344 1jgs_A Multiple antibiotic res 95.4 0.007 2.4E-07 45.5 2.4 67 35-108 36-102 (138)
345 3hsr_A HTH-type transcriptiona 95.4 0.0038 1.3E-07 47.4 0.7 67 35-108 38-104 (140)
346 1tbx_A ORF F-93, hypothetical 95.3 0.0081 2.8E-07 42.8 2.4 64 35-108 10-77 (99)
347 2y75_A HTH-type transcriptiona 95.3 0.0065 2.2E-07 45.8 2.0 47 46-102 24-70 (129)
348 2fbh_A Transcriptional regulat 95.3 0.01 3.6E-07 44.9 3.1 67 35-108 39-106 (146)
349 4hbl_A Transcriptional regulat 95.3 0.02 7E-07 43.7 4.8 68 34-108 42-109 (149)
350 2nnn_A Probable transcriptiona 95.2 0.0049 1.7E-07 46.4 1.1 67 35-108 40-106 (140)
351 2fa5_A Transcriptional regulat 95.2 0.0086 2.9E-07 46.4 2.4 67 35-108 51-117 (162)
352 3tgn_A ADC operon repressor AD 95.2 0.0091 3.1E-07 45.3 2.4 67 34-108 39-105 (146)
353 2x4h_A Hypothetical protein SS 95.1 0.01 3.5E-07 45.0 2.6 50 46-108 29-78 (139)
354 4aik_A Transcriptional regulat 95.1 0.015 5.1E-07 45.0 3.6 68 35-108 33-100 (151)
355 2eth_A Transcriptional regulat 95.1 0.011 3.7E-07 45.6 2.8 68 34-108 45-112 (154)
356 3s1s_A Restriction endonucleas 95.1 0.033 1.1E-06 54.6 6.6 68 190-257 319-406 (878)
357 3p8z_A Mtase, non-structural p 95.1 0.047 1.6E-06 45.7 6.7 74 181-256 69-150 (267)
358 1r1t_A Transcriptional repress 95.1 0.0073 2.5E-07 45.2 1.6 63 29-103 42-105 (122)
359 3cjn_A Transcriptional regulat 95.1 0.0089 3.1E-07 46.3 2.1 68 34-108 53-120 (162)
360 1lj9_A Transcriptional regulat 95.0 0.01 3.4E-07 45.0 2.3 67 35-108 31-97 (144)
361 2pex_A Transcriptional regulat 95.0 0.0095 3.3E-07 45.7 2.1 68 35-109 49-116 (153)
362 3s2w_A Transcriptional regulat 95.0 0.0087 3E-07 46.4 1.8 66 36-108 53-118 (159)
363 2ar0_A M.ecoki, type I restric 94.9 0.029 1E-06 52.7 5.7 66 192-257 169-268 (541)
364 3bpv_A Transcriptional regulat 94.9 0.0079 2.7E-07 45.1 1.4 67 35-108 31-97 (138)
365 1xn7_A Hypothetical protein YH 94.9 0.011 3.6E-07 40.8 1.9 43 38-87 7-49 (78)
366 2htj_A P fimbrial regulatory p 94.9 0.0095 3.2E-07 41.0 1.6 45 36-87 3-47 (81)
367 1i4w_A Mitochondrial replicati 94.9 0.068 2.3E-06 47.5 7.5 54 193-246 59-116 (353)
368 1z91_A Organic hydroperoxide r 94.8 0.0089 3E-07 45.4 1.5 69 34-109 41-109 (147)
369 3nqo_A MARR-family transcripti 94.8 0.05 1.7E-06 43.5 6.0 71 33-109 41-112 (189)
370 2k02_A Ferrous iron transport 94.8 0.01 3.5E-07 41.8 1.6 44 38-88 7-50 (87)
371 2frh_A SARA, staphylococcal ac 94.8 0.018 6.2E-07 43.1 3.1 68 35-108 39-107 (127)
372 2a61_A Transcriptional regulat 94.8 0.0077 2.6E-07 45.6 1.0 68 34-108 34-101 (145)
373 1sfx_A Conserved hypothetical 94.7 0.0078 2.7E-07 43.1 0.9 48 34-88 21-68 (109)
374 3khk_A Type I restriction-modi 94.7 0.015 5.3E-07 54.7 3.1 64 194-257 246-336 (544)
375 2lnb_A Z-DNA-binding protein 1 94.7 0.0096 3.3E-07 40.5 1.2 55 35-101 21-75 (80)
376 1rjd_A PPM1P, carboxy methyl t 94.6 0.055 1.9E-06 47.7 6.3 73 192-264 97-208 (334)
377 3r0a_A Putative transcriptiona 94.6 0.012 4E-07 44.1 1.7 48 35-88 28-76 (123)
378 3u2r_A Regulatory protein MARR 94.6 0.034 1.2E-06 43.4 4.5 69 34-108 47-116 (168)
379 2fbi_A Probable transcriptiona 94.5 0.0073 2.5E-07 45.5 0.4 68 34-108 37-104 (142)
380 2fbk_A Transcriptional regulat 94.4 0.012 4.1E-07 46.7 1.5 68 35-108 71-140 (181)
381 1ylf_A RRF2 family protein; st 94.4 0.015 5.1E-07 45.1 1.9 59 29-103 16-74 (149)
382 3lkd_A Type I restriction-modi 94.4 0.029 1E-06 52.7 4.1 66 192-257 221-304 (542)
383 4g6q_A Putative uncharacterize 94.2 0.052 1.8E-06 43.5 4.9 73 27-107 17-92 (182)
384 2obp_A Putative DNA-binding pr 94.2 0.029 1E-06 40.2 3.0 55 46-108 34-88 (96)
385 2h09_A Transcriptional regulat 94.0 0.037 1.3E-06 42.7 3.4 57 39-108 46-102 (155)
386 2qvo_A Uncharacterized protein 94.0 0.017 5.8E-07 40.9 1.4 52 48-108 30-81 (95)
387 2dk5_A DNA-directed RNA polyme 94.0 0.022 7.6E-07 40.4 1.9 62 35-102 22-84 (91)
388 2lkp_A Transcriptional regulat 93.8 0.019 6.6E-07 42.3 1.4 52 29-88 28-79 (119)
389 2zkz_A Transcriptional repress 93.8 0.015 5.3E-07 41.6 0.8 65 29-104 23-87 (99)
390 3hrs_A Metalloregulator SCAR; 93.6 0.039 1.3E-06 45.3 3.0 51 46-108 18-68 (214)
391 2px2_A Genome polyprotein [con 93.6 0.065 2.2E-06 45.3 4.3 73 181-256 64-145 (269)
392 1m6e_X S-adenosyl-L-methionnin 93.5 0.096 3.3E-06 46.6 5.5 72 191-262 50-151 (359)
393 3evf_A RNA-directed RNA polyme 93.4 0.2 6.7E-06 42.8 7.1 71 190-260 72-150 (277)
394 2esh_A Conserved hypothetical 93.3 0.17 5.7E-06 37.4 5.8 71 30-108 10-90 (118)
395 1xd7_A YWNA; structural genomi 93.2 0.036 1.2E-06 42.6 2.1 43 50-103 25-67 (145)
396 3k69_A Putative transcription 93.2 0.084 2.9E-06 41.5 4.2 48 46-103 26-73 (162)
397 3lkz_A Non-structural protein 93.1 0.1 3.6E-06 45.0 5.0 74 181-256 85-166 (321)
398 2fxa_A Protease production reg 93.1 0.028 9.4E-07 45.9 1.3 67 35-108 50-116 (207)
399 1bja_A Transcription regulator 93.0 0.051 1.7E-06 38.8 2.4 60 35-108 18-78 (95)
400 4b8x_A SCO5413, possible MARR- 92.9 0.026 8.9E-07 43.3 0.9 66 37-108 39-105 (147)
401 3lwf_A LIN1550 protein, putati 92.9 0.05 1.7E-06 42.7 2.5 46 47-102 43-88 (159)
402 2fe3_A Peroxide operon regulat 92.9 0.069 2.3E-06 41.1 3.2 66 33-101 22-87 (145)
403 2vn2_A DNAD, chromosome replic 92.8 0.051 1.7E-06 40.9 2.4 51 48-104 51-103 (128)
404 2pg4_A Uncharacterized protein 92.7 0.083 2.8E-06 37.2 3.2 63 38-108 20-83 (95)
405 2qlz_A Transcription factor PF 92.7 0.018 6.3E-07 48.1 -0.3 70 28-105 7-79 (232)
406 3t8r_A Staphylococcus aureus C 92.5 0.05 1.7E-06 41.8 2.0 46 47-102 27-72 (143)
407 3gcz_A Polyprotein; flavivirus 92.5 0.13 4.6E-06 43.9 4.8 42 181-224 81-122 (282)
408 2o03_A Probable zinc uptake re 92.5 0.066 2.2E-06 40.4 2.6 61 32-100 10-75 (131)
409 2pn6_A ST1022, 150AA long hypo 92.2 0.055 1.9E-06 41.5 1.9 48 34-88 4-51 (150)
410 1q1h_A TFE, transcription fact 92.2 0.037 1.3E-06 40.2 0.8 47 35-87 20-66 (110)
411 1p4x_A Staphylococcal accessor 92.2 0.065 2.2E-06 45.2 2.5 68 35-108 160-228 (250)
412 2cfx_A HTH-type transcriptiona 92.1 0.061 2.1E-06 41.1 2.0 47 35-88 7-53 (144)
413 2qy6_A UPF0209 protein YFCK; s 91.9 0.099 3.4E-06 44.2 3.3 33 192-224 60-104 (257)
414 2p4w_A Transcriptional regulat 91.9 0.066 2.3E-06 43.7 2.1 70 27-104 9-80 (202)
415 2w25_A Probable transcriptiona 91.9 0.065 2.2E-06 41.2 1.9 47 35-88 9-55 (150)
416 3u1d_A Uncharacterized protein 91.8 0.13 4.4E-06 39.9 3.6 87 34-138 30-124 (151)
417 4fx0_A Probable transcriptiona 91.7 0.066 2.3E-06 41.1 1.8 65 36-108 36-105 (148)
418 2v79_A DNA replication protein 91.5 0.074 2.5E-06 40.5 1.9 53 47-105 50-104 (135)
419 2zig_A TTHA0409, putative modi 91.5 0.28 9.7E-06 42.1 5.8 49 179-232 225-274 (297)
420 1sfu_A 34L protein; protein/Z- 91.4 0.075 2.5E-06 36.1 1.6 53 38-101 20-72 (75)
421 1j5y_A Transcriptional regulat 91.4 0.1 3.6E-06 41.8 2.8 59 33-104 21-80 (187)
422 2p5v_A Transcriptional regulat 91.4 0.077 2.6E-06 41.3 1.9 47 35-88 12-58 (162)
423 2dbb_A Putative HTH-type trans 91.3 0.094 3.2E-06 40.2 2.4 48 34-88 10-57 (151)
424 3cta_A Riboflavin kinase; stru 91.3 0.063 2.2E-06 44.4 1.4 53 47-108 26-78 (230)
425 2cyy_A Putative HTH-type trans 91.3 0.074 2.5E-06 40.9 1.7 47 35-88 9-55 (151)
426 1okr_A MECI, methicillin resis 91.3 0.033 1.1E-06 41.0 -0.3 64 35-108 12-80 (123)
427 1mzb_A Ferric uptake regulatio 91.2 0.1 3.6E-06 39.5 2.4 60 34-101 19-84 (136)
428 3i4p_A Transcriptional regulat 91.1 0.088 3E-06 41.1 2.0 48 34-88 4-51 (162)
429 2xvc_A ESCRT-III, SSO0910; cel 91.0 0.052 1.8E-06 34.6 0.4 46 35-86 12-57 (59)
430 1uly_A Hypothetical protein PH 91.0 0.1 3.5E-06 42.1 2.3 52 28-87 15-66 (192)
431 2cg4_A Regulatory protein ASNC 90.9 0.08 2.7E-06 40.7 1.6 47 35-88 10-56 (152)
432 1p6r_A Penicillinase repressor 90.8 0.04 1.4E-06 37.8 -0.2 52 34-88 10-61 (82)
433 3mwm_A ZUR, putative metal upt 90.8 0.14 4.7E-06 39.1 2.8 67 32-101 13-79 (139)
434 2e1c_A Putative HTH-type trans 90.8 0.098 3.3E-06 41.4 2.0 48 34-88 28-75 (171)
435 1i1g_A Transcriptional regulat 90.8 0.093 3.2E-06 39.6 1.8 47 35-88 6-52 (141)
436 2k4b_A Transcriptional regulat 90.8 0.047 1.6E-06 39.3 0.1 51 35-88 37-87 (99)
437 2ia0_A Putative HTH-type trans 90.5 0.1 3.6E-06 41.2 1.9 48 34-88 18-65 (171)
438 2d1h_A ST1889, 109AA long hypo 90.5 0.059 2E-06 38.4 0.4 36 47-88 35-70 (109)
439 3k2z_A LEXA repressor; winged 90.3 0.11 3.8E-06 41.9 2.0 42 41-88 17-58 (196)
440 4esf_A PADR-like transcription 90.1 0.24 8.3E-06 36.5 3.5 70 29-106 7-84 (117)
441 1v4r_A Transcriptional repress 89.8 0.22 7.4E-06 35.5 3.0 53 29-88 15-69 (102)
442 1ku9_A Hypothetical protein MJ 89.7 0.089 3E-06 39.6 0.9 47 36-88 29-75 (152)
443 3i71_A Ethanolamine utilizatio 89.5 0.25 8.6E-06 31.5 2.6 49 41-102 11-59 (68)
444 1p4x_A Staphylococcal accessor 89.3 0.2 6.8E-06 42.2 2.8 68 35-108 36-104 (250)
445 3cvo_A Methyltransferase-like 89.3 1.6 5.4E-05 35.4 8.1 51 192-245 30-90 (202)
446 1zkd_A DUF185; NESG, RPR58, st 89.1 1 3.4E-05 40.4 7.4 38 191-228 79-123 (387)
447 1hsj_A Fusion protein consisti 88.8 0.15 5.2E-06 46.6 1.9 67 36-108 407-474 (487)
448 1fx7_A Iron-dependent represso 88.1 0.16 5.5E-06 42.0 1.4 47 50-108 26-72 (230)
449 3elk_A Putative transcriptiona 88.1 0.45 1.5E-05 35.0 3.7 71 28-106 9-87 (117)
450 2xig_A Ferric uptake regulatio 87.9 0.24 8.1E-06 38.2 2.2 62 32-101 26-92 (150)
451 2wk1_A NOVP; transferase, O-me 87.3 1.2 4.1E-05 38.1 6.4 65 192-256 106-215 (282)
452 2uyo_A Hypothetical protein ML 87.2 0.98 3.4E-05 39.1 6.0 71 192-264 102-193 (310)
453 1yg2_A Gene activator APHA; vi 87.2 0.29 1E-05 38.7 2.4 63 35-105 4-76 (179)
454 1cf7_A Protein (transcription 86.9 0.26 9E-06 33.5 1.7 36 47-88 29-65 (76)
455 2g9w_A Conserved hypothetical 86.7 0.19 6.5E-06 38.0 1.0 53 34-88 10-62 (138)
456 2hoe_A N-acetylglucosamine kin 86.7 0.19 6.4E-06 44.8 1.1 58 24-89 11-68 (380)
457 3f8b_A Transcriptional regulat 86.6 0.52 1.8E-05 34.6 3.3 71 28-106 7-87 (116)
458 3hhh_A Transcriptional regulat 86.4 0.39 1.3E-05 35.3 2.5 71 28-106 8-86 (116)
459 2o0m_A Transcriptional regulat 86.2 0.14 4.8E-06 45.1 0.0 60 35-108 22-81 (345)
460 1xma_A Predicted transcription 86.1 0.22 7.7E-06 38.2 1.1 71 29-107 37-117 (145)
461 2qq9_A Diphtheria toxin repres 86.0 0.34 1.2E-05 39.9 2.3 49 48-108 24-72 (226)
462 2pjp_A Selenocysteine-specific 85.6 0.3 1E-05 36.1 1.6 54 36-103 10-63 (121)
463 3eld_A Methyltransferase; flav 85.1 0.59 2E-05 40.3 3.3 68 190-257 79-154 (300)
464 2p8t_A Hypothetical protein PH 83.7 0.5 1.7E-05 38.3 2.2 47 47-106 29-75 (200)
465 1sd4_A Penicillinase repressor 83.6 0.22 7.4E-06 36.6 -0.0 52 34-88 11-62 (126)
466 2yu3_A DNA-directed RNA polyme 83.5 0.23 8E-06 35.3 0.1 49 34-88 38-87 (95)
467 1z6r_A MLC protein; transcript 83.2 0.55 1.9E-05 42.0 2.5 53 30-89 13-65 (406)
468 2w57_A Ferric uptake regulatio 83.2 0.27 9.1E-06 37.9 0.4 64 34-100 18-82 (150)
469 1g60_A Adenine-specific methyl 82.3 2.3 7.8E-05 35.5 5.9 48 179-231 202-250 (260)
470 1jhg_A Trp operon repressor; c 82.3 0.61 2.1E-05 33.5 1.9 40 32-79 44-83 (101)
471 2py6_A Methyltransferase FKBM; 82.2 2.1 7.1E-05 38.5 5.9 40 191-230 225-267 (409)
472 2qlz_A Transcription factor PF 82.1 1.3 4.5E-05 36.7 4.3 53 36-102 168-220 (232)
473 3l7w_A Putative uncharacterize 81.7 0.37 1.3E-05 34.8 0.6 65 33-106 9-79 (108)
474 3eyy_A Putative iron uptake re 81.2 0.56 1.9E-05 35.9 1.5 64 34-101 20-83 (145)
475 1z05_A Transcriptional regulat 80.8 0.64 2.2E-05 42.0 2.0 53 29-88 35-87 (429)
476 3lmm_A Uncharacterized protein 80.6 0.72 2.5E-05 43.6 2.4 60 35-108 432-496 (583)
477 4esb_A Transcriptional regulat 80.6 0.5 1.7E-05 34.7 1.0 64 35-106 11-82 (115)
478 3l9f_A Putative uncharacterize 79.7 1.6 5.6E-05 35.3 3.9 61 37-105 40-110 (204)
479 3ufb_A Type I restriction-modi 79.5 2.7 9.2E-05 39.2 5.9 75 181-257 208-309 (530)
480 1bia_A BIRA bifunctional prote 79.0 0.91 3.1E-05 39.5 2.3 55 36-102 8-62 (321)
481 3e6c_C CPRK, cyclic nucleotide 78.1 1.3 4.5E-05 36.2 3.0 55 47-114 176-232 (250)
482 4ets_A Ferric uptake regulatio 78.0 1.9 6.6E-05 33.5 3.8 66 34-101 34-100 (162)
483 3maj_A DNA processing chain A; 77.5 0.71 2.4E-05 41.2 1.2 53 35-101 330-382 (382)
484 2gqq_A Leucine-responsive regu 77.2 0.44 1.5E-05 37.0 -0.2 45 35-86 15-59 (163)
485 3kor_A Possible Trp repressor; 76.9 2.1 7E-05 31.6 3.3 40 31-79 61-100 (119)
486 2vxz_A Pyrsv_GP04; viral prote 76.6 0.96 3.3E-05 34.7 1.5 45 37-89 15-59 (165)
487 3tqn_A Transcriptional regulat 76.0 0.94 3.2E-05 32.9 1.3 37 46-88 30-67 (113)
488 3dv8_A Transcriptional regulat 75.7 1.3 4.3E-05 35.3 2.2 42 48-102 169-210 (220)
489 2oz6_A Virulence factor regula 75.6 1 3.5E-05 35.5 1.5 35 48-88 164-198 (207)
490 2ek5_A Predicted transcription 75.6 1.4 4.9E-05 32.8 2.3 37 46-88 25-62 (129)
491 3mag_A VP39; methylated adenin 75.3 2.1 7.2E-05 36.7 3.4 54 192-246 60-117 (307)
492 2zcw_A TTHA1359, transcription 74.9 1.1 3.9E-05 35.3 1.7 42 48-102 146-187 (202)
493 3qph_A TRMB, A global transcri 74.8 0.27 9.3E-06 43.3 -2.3 60 34-104 19-78 (342)
494 3e97_A Transcriptional regulat 74.7 1.4 4.6E-05 35.5 2.1 42 48-102 175-216 (231)
495 2z99_A Putative uncharacterize 74.2 1.5 5E-05 36.1 2.1 60 36-105 103-162 (219)
496 3b02_A Transcriptional regulat 73.9 1.1 3.9E-05 35.1 1.4 42 48-102 139-180 (195)
497 3ryp_A Catabolite gene activat 73.9 1.2 4.1E-05 35.1 1.6 35 48-88 167-201 (210)
498 2gau_A Transcriptional regulat 73.7 1.6 5.4E-05 35.1 2.3 43 47-102 179-221 (232)
499 3iwz_A CAP-like, catabolite ac 73.6 1.2 4.2E-05 35.6 1.6 35 48-88 187-221 (230)
500 3d0s_A Transcriptional regulat 73.3 1.5 5.3E-05 35.0 2.1 43 47-102 176-218 (227)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=4e-46 Score=336.90 Aligned_cols=242 Identities=21% Similarity=0.310 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCC
Q 042491 12 RGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSD 91 (266)
Q Consensus 12 ~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~ 91 (266)
++...|.+++.||+.+++|++|++|||||+|.+.++|+|++|||+++|++++. +.|+||+|++.|+|.+...
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~------l~rlLr~L~~~gll~~~~~-- 78 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHG------TELLLDICVSLKLLKVETR-- 78 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHH------HHHHHHHHHHCCCEEEecc--
Confidence 66778999999999999999999999999998755799999999999999877 9999999999999986542
Q ss_pred CCCCceEeCchhch-hhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCC---CcchhcccCchHHHHH
Q 042491 92 GSEETMYGLTQISK-WLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGC---EMWDFASQNSQFNNSF 167 (266)
Q Consensus 92 ~~g~~~y~lt~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~---~~~~~~~~~~~~~~~f 167 (266)
++.+.|++|++++ +|+++++.++.+++.++. ...++.|.+|.+++++++++|...+|. ++|+++.++|+....|
T Consensus 79 -~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 79 -GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp -TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred -CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 1246899999986 677888889999988874 567899999999999999999999884 6899999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC------CCCeEEEE
Q 042491 168 NKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV------YEGVSHVG 241 (266)
Q Consensus 168 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~ri~~~~ 241 (266)
+++|...+....+.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|++++.+++ .+||++++
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 99999998888889999999 88999999999999999999999999999999999999987653 68999999
Q ss_pred ccCCCC-CCCccEEEeccccccCCC
Q 042491 242 GDMLNA-VPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 242 gd~~~~-~p~aD~~~l~~vLHd~~~ 265 (266)
||||++ .|++|+|++++|||||+|
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d 259 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWAD 259 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCH
T ss_pred CccccCCCCCceEEEeeeecccCCH
Confidence 999984 778999999999999986
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=9.2e-44 Score=322.67 Aligned_cols=256 Identities=34% Similarity=0.558 Sum_probs=228.8
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCC-CCCCHHHHHhhcCC--CCCCCCchhhHHHHHHHHhccC
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHG-SPITLPQLASGINS--SCPDVHIIPSLTRIMRMLVRKG 82 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g-~~~t~~eLA~~~g~--~~~~~~~~~~l~rlLr~L~~~g 82 (266)
...|..+++..+++++.+++.+++|++|++|||||+|..+| +|+|++|||+++|+ +++. +.++.||||+|++.|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~---~~~l~rlLr~L~~~g 89 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEA---PDMVDRILRLLASYN 89 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTH---HHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccc---hhhHHHHHHHHHhCC
Confidence 66778899999999999999999999999999999999864 69999999999998 7662 346999999999999
Q ss_pred cccccccCCCCC--CceEeCchhchhhhcCC-CCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhccc
Q 042491 83 VFAAHRSSDGSE--ETMYGLTQISKWLLRDS-EMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQ 159 (266)
Q Consensus 83 il~~~~~~~~~g--~~~y~lt~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 159 (266)
+|++...++++| .++|++|+.++.|+.++ +.++++++.++.++.+++.|.+|.+++++|.+||+..+|.++|+++.+
T Consensus 90 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~ 169 (364)
T 3p9c_A 90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGT 169 (364)
T ss_dssp SEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTT
T ss_pred CEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHh
Confidence 999973211112 37899999999887654 568999988876677789999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEE
Q 042491 160 NSQFNNSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSH 239 (266)
Q Consensus 160 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~ 239 (266)
+|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||++
T Consensus 170 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 248 (364)
T 3p9c_A 170 DPRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH 248 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEE
Confidence 9999999999999988888888898887 367889999999999999999999999999999999999999988899999
Q ss_pred EEccCCCCCCCccEEEeccccccCCC
Q 042491 240 VGGDMLNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 240 ~~gd~~~~~p~aD~~~l~~vLHd~~~ 265 (266)
+.+||++++|..|+|+++++||+|++
T Consensus 249 ~~~D~~~~~p~~D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 249 VGGDMFKEVPSGDTILMKWILHDWSD 274 (364)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred EeCCcCCCCCCCCEEEehHHhccCCH
Confidence 99999999887799999999999975
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3.7e-42 Score=312.53 Aligned_cols=256 Identities=35% Similarity=0.592 Sum_probs=223.9
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhC-C--CCCCHHHHHhhcCC-CCCCCCchhhHHHHHHHHhcc
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCH-G--SPITLPQLASGINS-SCPDVHIIPSLTRIMRMLVRK 81 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~-g--~~~t~~eLA~~~g~-~~~~~~~~~~l~rlLr~L~~~ 81 (266)
.+.+..++...+++++.|++.+++|++|++|||||+|.+. | +|+|++|||+++|. ++.. +.++.||||+|++.
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~---~~~l~rlLr~L~~~ 90 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEA---PVMLDRVLRLLASY 90 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTH---HHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcc---hhhHHHHHHHHHhC
Confidence 3346778889999999999999999999999999999974 2 47999999999984 6542 45699999999999
Q ss_pred CcccccccCCCCC--CceEeCchhchhhhcCC-CCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcc
Q 042491 82 GVFAAHRSSDGSE--ETMYGLTQISKWLLRDS-EMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFAS 158 (266)
Q Consensus 82 gil~~~~~~~~~g--~~~y~lt~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~ 158 (266)
|+|++...++++| .++|++|+.++.|+.+. +.++++++.++.++.+++.|.+|.+++++|.++|+..+|.++|+++.
T Consensus 91 gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~ 170 (368)
T 3reo_A 91 SVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHG 170 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHT
T ss_pred CCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHh
Confidence 9999872111112 37899999999887554 57899998887666778999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeE
Q 042491 159 QNSQFNNSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVS 238 (266)
Q Consensus 159 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~ 238 (266)
++|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+
T Consensus 171 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~ 249 (368)
T 3reo_A 171 TDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVE 249 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEE
T ss_pred hCHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCE
Confidence 99999999999999998888888898886 36788999999999999999999999999999999999999998888999
Q ss_pred EEEccCCCCCCCccEEEeccccccCCC
Q 042491 239 HVGGDMLNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 239 ~~~gd~~~~~p~aD~~~l~~vLHd~~~ 265 (266)
++.|||++++|..|+|+++++||+|++
T Consensus 250 ~~~~d~~~~~p~~D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 250 HLGGDMFDGVPKGDAIFIKWICHDWSD 276 (368)
T ss_dssp EEECCTTTCCCCCSEEEEESCGGGBCH
T ss_pred EEecCCCCCCCCCCEEEEechhhcCCH
Confidence 999999999987799999999999975
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.5e-42 Score=311.24 Aligned_cols=244 Identities=22% Similarity=0.306 Sum_probs=222.0
Q ss_pred cchHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcc
Q 042491 5 DVREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVF 84 (266)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil 84 (266)
..+....++...+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++|++++. +.||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~------l~rlLr~l~~~g~l 85 (348)
T 3lst_A 14 GGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADA------LRRVLRLLAVRDVV 85 (348)
T ss_dssp --CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSE
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHH------HHHHHHHHHhCCCE
Confidence 3455667888999999999999999999999999999986 799999999999998766 99999999999999
Q ss_pred cccccCCCCCCceEeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHH
Q 042491 85 AAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFN 164 (266)
Q Consensus 85 ~~~~~~~~~g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 164 (266)
++ + +++|++|+.++.|+++++.++.+++.++.++..++.|.+|+++++++.++|+..+|.++|+++.++|+..
T Consensus 86 ~~-~------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~ 158 (348)
T 3lst_A 86 RE-S------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVE 158 (348)
T ss_dssp EE-E------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHH
T ss_pred Ee-c------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHH
Confidence 99 4 4899999999988887777899988887666578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-----CCCeEE
Q 042491 165 NSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-----YEGVSH 239 (266)
Q Consensus 165 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-----~~ri~~ 239 (266)
+.|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|+++...+. .+||++
T Consensus 159 ~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~ 236 (348)
T 3lst_A 159 ALYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKV 236 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEE
T ss_pred HHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEE
Confidence 99999999998888888999998 88899999999999999999999999999999999999883321 578999
Q ss_pred EEccCCCCCCCccEEEeccccccCCC
Q 042491 240 VGGDMLNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 240 ~~gd~~~~~p~aD~~~l~~vLHd~~~ 265 (266)
+.+|+++++|++|+|+++++||+|++
T Consensus 237 ~~~d~~~~~p~~D~v~~~~vlh~~~d 262 (348)
T 3lst_A 237 VEGDFLREVPHADVHVLKRILHNWGD 262 (348)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred EecCCCCCCCCCcEEEEehhccCCCH
Confidence 99999988889999999999999985
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=6.7e-42 Score=308.77 Aligned_cols=252 Identities=37% Similarity=0.605 Sum_probs=226.3
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccc
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFA 85 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~ 85 (266)
..++++++...+++++.+++.+++|++++++|||++|+..|+++|++|||+++|+++.. ++.+.|+||+|++.|+|+
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~---~~~l~rlLr~L~~~gll~ 85 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK---IGNVRRLMRYLAHNGFFE 85 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGG---HHHHHHHHHHHHHTTSEE
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCC---hHHHHHHHHHHHhCCeEE
Confidence 45789999999999999999999999999999999999754599999999999997544 567999999999999999
Q ss_pred ccccCCCCCCceEeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHh-cCCchhhhhhCCCcchhcccCchHH
Q 042491 86 AHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVE-EGGHAFKKAHGCEMWDFASQNSQFN 164 (266)
Q Consensus 86 ~~~~~~~~g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~ 164 (266)
+.. +++++|++|+.+++|+++++.++.+++.++.++..++.|.+|+++++ +|.++|+.++|.++|+++.++|+..
T Consensus 86 ~~~----~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~ 161 (352)
T 1fp2_A 86 IIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYN 161 (352)
T ss_dssp EEE----SSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHH
T ss_pred Eec----CCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHH
Confidence 882 01489999999999998887789999988766667899999999999 8889999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEEEEccC
Q 042491 165 NSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDM 244 (266)
Q Consensus 165 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~ 244 (266)
+.|+++|...+....+. +..+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+
T Consensus 162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~ 240 (352)
T 1fp2_A 162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDM 240 (352)
T ss_dssp HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCT
T ss_pred HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccc
Confidence 99999999988777677 77782227788999999999999999999999999999999999999988767799999999
Q ss_pred CCCCCCccEEEeccccccCCC
Q 042491 245 LNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 245 ~~~~p~aD~~~l~~vLHd~~~ 265 (266)
++++|++|+|+++++||+|++
T Consensus 241 ~~~~p~~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 241 FTSIPNADAVLLKYILHNWTD 261 (352)
T ss_dssp TTCCCCCSEEEEESCGGGSCH
T ss_pred cCCCCCccEEEeehhhccCCH
Confidence 998889999999999999975
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=9.2e-42 Score=308.54 Aligned_cols=254 Identities=34% Similarity=0.533 Sum_probs=224.0
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccc
Q 042491 8 EDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAH 87 (266)
Q Consensus 8 ~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~ 87 (266)
++++++...+++++.+++.+++|++++++||||+|+..|+|+|++|||+++|+++.. ++.+.|+||+|++.|+|.+.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~---~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK---VNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTT---HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcc---hHHHHHHHHHHhhCCcEEEe
Confidence 578899999999999999999999999999999999744599999999999997554 66799999999999999987
Q ss_pred ccCC-C-CC--CceEeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcC--CchhhhhhCCCcchhcccCc
Q 042491 88 RSSD-G-SE--ETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEG--GHAFKKAHGCEMWDFASQNS 161 (266)
Q Consensus 88 ~~~~-~-~g--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~~~~ 161 (266)
..+. + +| +++|++|+.+++|+++++.++.+++.++.++..++.|.+|+++++++ .++|+.++|.++|+++.++|
T Consensus 82 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 82 IVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp EECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred cccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 1000 0 01 37999999999999888778999998876667789999999999998 78999999999999999999
Q ss_pred hHHH--HHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEE
Q 042491 162 QFNN--SFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSH 239 (266)
Q Consensus 162 ~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~ 239 (266)
+..+ .|+++|...+.... .+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999998877666 78888832267788999999999999999999999999999999999998887677999
Q ss_pred EEccCCCCCCCccEEEeccccccCCC
Q 042491 240 VGGDMLNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 240 ~~gd~~~~~p~aD~~~l~~vLHd~~~ 265 (266)
+.+|+++++|.+|+|+++++||+|++
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWND 266 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred EeCccCCCCCCceEEEEcccccCCCH
Confidence 99999998889999999999999975
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2e-41 Score=307.72 Aligned_cols=244 Identities=23% Similarity=0.399 Sum_probs=222.9
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccc
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFA 85 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~ 85 (266)
.+....+...++++++.+++.+++|++++++||||+|++ +|+|++|||+++|++++. +.||||+|++.|+|+
T Consensus 31 ~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~------l~rlLr~L~~~g~l~ 102 (369)
T 3gwz_A 31 GTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQT------LRRLLRLLATVGVFD 102 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSSE
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHH------HHHHHHHHHhCCCEE
Confidence 344455777899999999999999999999999999995 799999999999998766 999999999999999
Q ss_pred ccccCCCCCCce-EeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHH
Q 042491 86 AHRSSDGSEETM-YGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFN 164 (266)
Q Consensus 86 ~~~~~~~~g~~~-y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 164 (266)
+.+ +++ |++|++++.|+++.+.++.+++.++.++..++.|.+|.++++++.++|...+|.++|+++.++|+..
T Consensus 103 ~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~ 176 (369)
T 3gwz_A 103 DLG------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKAR 176 (369)
T ss_dssp ECS------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHH
T ss_pred EeC------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHH
Confidence 976 478 9999999988888777888888887665568899999999999999999999989999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCe
Q 042491 165 NSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGV 237 (266)
Q Consensus 165 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri 237 (266)
+.|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||
T Consensus 177 ~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v 254 (369)
T 3gwz_A 177 ELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC 254 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCce
Confidence 99999999998888888999998 88889999999999999999999999999999999999987764 5799
Q ss_pred EEEEccCCCCCC-CccEEEeccccccCCC
Q 042491 238 SHVGGDMLNAVP-NADAVFMKVIVLIQDL 265 (266)
Q Consensus 238 ~~~~gd~~~~~p-~aD~~~l~~vLHd~~~ 265 (266)
+++.+|+++++| ++|+|+++++||+|++
T Consensus 255 ~~~~~d~~~~~p~~~D~v~~~~vlh~~~d 283 (369)
T 3gwz_A 255 EILPGDFFETIPDGADVYLIKHVLHDWDD 283 (369)
T ss_dssp EEEECCTTTCCCSSCSEEEEESCGGGSCH
T ss_pred EEeccCCCCCCCCCceEEEhhhhhccCCH
Confidence 999999998888 6999999999999985
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=8e-41 Score=303.90 Aligned_cols=259 Identities=31% Similarity=0.517 Sum_probs=210.2
Q ss_pred CccchHHhhHHHHHHH--HHHHhHHHHHHHHHHHhcChhhHhhhCCCC---CCHHHHHhhcCC---CCCCCCchhhHHHH
Q 042491 3 SADVREDVLRGQAQVW--QLMFAFADSMALKSAVELRLADIMHCHGSP---ITLPQLASGINS---SCPDVHIIPSLTRI 74 (266)
Q Consensus 3 ~~~~~~~~~~~~~~l~--~~~~g~~~~~~L~~a~elglfd~L~~~g~~---~t~~eLA~~~g~---~~~~~~~~~~l~rl 74 (266)
++.+.++.++++..++ +++.+++.+++|++|+++||||+|+..|+| +|++|||+++|+ ++.. ++.+.|+
T Consensus 12 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~---~~~l~rl 88 (372)
T 1fp1_D 12 QISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDL---PNRLDRM 88 (372)
T ss_dssp -------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTH---HHHHHHH
T ss_pred ccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcC---hHHHHHH
Confidence 4566778889999999 999999999999999999999999974226 999999999999 5433 5679999
Q ss_pred HHHHhccCcccccccCCCCC--CceEeCchhchhhhcCCC-CChHHHHHHhcChhhhhhhhhhHHHHhcC-CchhhhhhC
Q 042491 75 MRMLVRKGVFAAHRSSDGSE--ETMYGLTQISKWLLRDSE-MSLAPMILFQNSQLLQAPCHHLSQCVEEG-GHAFKKAHG 150 (266)
Q Consensus 75 Lr~L~~~gil~~~~~~~~~g--~~~y~lt~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g 150 (266)
||+|++.|+|++....+++| .++|++|+.+++|+++++ .++++++.++.++.+++.|.+|+++++++ .+||+..+|
T Consensus 89 Lr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g 168 (372)
T 1fp1_D 89 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG 168 (372)
T ss_dssp HHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------
T ss_pred HHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhC
Confidence 99999999999872000012 369999999999998876 68899998876667789999999999999 889999999
Q ss_pred CCcchhcccCchHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhh
Q 042491 151 CEMWDFASQNSQFNNSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVAT 230 (266)
Q Consensus 151 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~ 230 (266)
.++|+++.++|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~ 247 (372)
T 1fp1_D 169 VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247 (372)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHh
Confidence 9999999999999999999999988877788888885 367789999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEccCCCCCCCccEEEeccccccCCC
Q 042491 231 APVYEGVSHVGGDMLNAVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 231 a~~~~ri~~~~gd~~~~~p~aD~~~l~~vLHd~~~ 265 (266)
+++.++|+++.+|+++++|.+|+|+++++||+|++
T Consensus 248 a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 248 APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSD 282 (372)
T ss_dssp CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCH
T ss_pred hhhcCCCEEEeCCcccCCCCCCEEEEecccccCCH
Confidence 88778899999999998888999999999999975
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=8.2e-42 Score=305.66 Aligned_cols=236 Identities=21% Similarity=0.340 Sum_probs=214.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCC
Q 042491 14 QAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGS 93 (266)
Q Consensus 14 ~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~ 93 (266)
+..+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++|++++. +.||||+|++.|+|.+.+
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~------l~rlLr~l~~~gl~~~~~----- 72 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADS------LDRLLRHLVAVGLFTRDG----- 72 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECT-----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHhCCcEEecC-----
Confidence 4567899999999999999999999999986 799999999999998766 999999999999999986
Q ss_pred CCceEeCchhchhhhcCCCCChHHHHHHhcChhhh-hhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHHHHHHH
Q 042491 94 EETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQ-APCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSFNKAMA 172 (266)
Q Consensus 94 g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 172 (266)
+++|.+|++++.|+++++.++.+++.++.+...+ +.|.+|+++++++.++|+..+|.++|+++.++|+..+.|+++|.
T Consensus 73 -~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 73 -QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp -TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred -CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 5899999999988877777888888776433445 89999999999999999999998999999999999999999999
Q ss_pred hhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCC
Q 042491 173 CTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDML 245 (266)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~ 245 (266)
..+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|++
T Consensus 152 ~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 152 HHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 988777777888888 77889999999999999999999999999999999999988764 479999999999
Q ss_pred CCCC-CccEEEeccccccCCC
Q 042491 246 NAVP-NADAVFMKVIVLIQDL 265 (266)
Q Consensus 246 ~~~p-~aD~~~l~~vLHd~~~ 265 (266)
+++| ++|+|+++++||+|++
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~ 250 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDD 250 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCH
T ss_pred CCCCCCCcEEEEehhhccCCH
Confidence 8888 6999999999999985
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.3e-40 Score=293.37 Aligned_cols=234 Identities=28% Similarity=0.381 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCC
Q 042491 12 RGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSD 91 (266)
Q Consensus 12 ~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~ 91 (266)
.++..+++++.|++.+++|++++++|||++|.. +|+|++|||+++|++++. +.|+||+|++.|+|.+.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~------l~r~Lr~L~~~g~l~~~~--- 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAER------IHRLMRLLVAFEIFQGDT--- 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHH------HHHHHHHHHhCCceEecC---
Confidence 677899999999999999999999999999986 799999999999998766 999999999999999986
Q ss_pred CCCCceEeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHHHHHH
Q 042491 92 GSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSFNKAM 171 (266)
Q Consensus 92 ~~g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 171 (266)
++.|++|+.++.|+ +++.++.+++.++.+... +.|.+|+++++++.++|+..+|.++|+++.++|+..+.|+++|
T Consensus 76 ---~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 76 ---RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp ---TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred ---CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 58999999999888 767788999988765444 8999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccC
Q 042491 172 ACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDM 244 (266)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~ 244 (266)
..+....+.+++.++ +++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+
T Consensus 151 -~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 226 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226 (334)
T ss_dssp -GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT
T ss_pred -HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC
Confidence 888777888999888 777 9999999999999999999999999999999888877654 47899999999
Q ss_pred CCCCCC-ccEEEeccccccCCC
Q 042491 245 LNAVPN-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 245 ~~~~p~-aD~~~l~~vLHd~~~ 265 (266)
++++|+ +|+|+++++||+|++
T Consensus 227 ~~~~~~~~D~v~~~~vl~~~~~ 248 (334)
T 2ip2_A 227 LQEVPSNGDIYLLSRIIGDLDE 248 (334)
T ss_dssp TTCCCSSCSEEEEESCGGGCCH
T ss_pred CCCCCCCCCEEEEchhccCCCH
Confidence 998885 999999999999974
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3e-39 Score=292.78 Aligned_cols=239 Identities=16% Similarity=0.188 Sum_probs=202.2
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccc
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFA 85 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~ 85 (266)
.+++++++...+++++.|++.+++|++++++||||+|+.+++|+|++|||+++|++++. +.||||+|++.|+|+
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~------l~rlLr~l~~~g~l~ 81 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYA------AQVLLEASLTIGTIL 81 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHH------HHHHHHHHHHHTSEE
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHH------HHHHHHHHhhCCCeE
Confidence 45678899999999999999999999999999999999755799999999999999876 999999999999998
Q ss_pred ccccCCCCCCceEeCchhchhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhC--CCcchhcccCchH
Q 042491 86 AHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHG--CEMWDFASQNSQF 163 (266)
Q Consensus 86 ~~~~~~~~g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~ 163 (266)
+.+ ++|++|+.+++|+++++. ..++.+. .+..++.|.+|+++++++.+++...+| .++|+++.++|+.
T Consensus 82 ~~~-------~~y~~t~~s~~L~~~~~~--~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (363)
T 3dp7_A 82 LEE-------DRYVLAKAGWFLLNDKMA--RVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQ 151 (363)
T ss_dssp EET-------TEEEECHHHHHHHHCHHH--HHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHH
T ss_pred ecC-------CEEecccchHHhhCCCcc--cchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHH
Confidence 865 899999999999876532 2233333 356789999999999999988888888 5899999999987
Q ss_pred HHH----HHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC------
Q 042491 164 NNS----FNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV------ 233 (266)
Q Consensus 164 ~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------ 233 (266)
.+. |+.+|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|++++.+++
T Consensus 152 ~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~ 226 (363)
T 3dp7_A 152 VQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLS 226 (363)
T ss_dssp HHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcC
Confidence 663 566554432 223445444 35778999999999999999999999999999999999987764
Q ss_pred -CCCeEEEEccCCCC---CC-CccEEEeccccccCCC
Q 042491 234 -YEGVSHVGGDMLNA---VP-NADAVFMKVIVLIQDL 265 (266)
Q Consensus 234 -~~ri~~~~gd~~~~---~p-~aD~~~l~~vLHd~~~ 265 (266)
.+||+++.+|++++ +| ++|+|+++++||+|++
T Consensus 227 ~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~ 263 (363)
T 3dp7_A 227 GSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSE 263 (363)
T ss_dssp TGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCH
T ss_pred cccceEEEEccccccCCCCCCCcCEEEEechhhhCCH
Confidence 36899999999994 77 5999999999999975
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.7e-37 Score=281.52 Aligned_cols=239 Identities=23% Similarity=0.344 Sum_probs=213.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccC
Q 042491 11 LRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSS 90 (266)
Q Consensus 11 ~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~ 90 (266)
.+....+++++.+++.+++|++++++|||++|.. +++|++|||+++|++++. +.|+||+|++.|+|.+.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~------l~r~Lr~L~~~Gll~~~~-- 83 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQA------LSRLVRHLTVVGVLEGGE-- 83 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHH------HHHHHHHHHHTTSEECCC--
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHH------HHHHHHHHhhCCCEEEeC--
Confidence 3455689999999999999999999999999975 799999999999998766 999999999999999865
Q ss_pred CCCCCc--eEeCchhchhhhcCCCCChHHHHHHhcChhhh-hhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHH
Q 042491 91 DGSEET--MYGLTQISKWLLRDSEMSLAPMILFQNSQLLQ-APCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSF 167 (266)
Q Consensus 91 ~~~g~~--~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 167 (266)
++ .|++|++++.|+++++.++..++.+..++..+ ..|.+|.+.++++.++|+..+|.++|+++.++|+..+.|
T Consensus 84 ----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 159 (374)
T 1qzz_A 84 ----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSF 159 (374)
T ss_dssp ----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred ----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHH
Confidence 36 99999999999988877888888776433456 899999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEE
Q 042491 168 NKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHV 240 (266)
Q Consensus 168 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~ 240 (266)
+++|...+....+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ .+||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 160 DALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 99998877766778888888 77889999999999999999999999999999999988887764 3589999
Q ss_pred EccCCCCCCC-ccEEEeccccccCCC
Q 042491 241 GGDMLNAVPN-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 241 ~gd~~~~~p~-aD~~~l~~vLHd~~~ 265 (266)
.+|+++++|. +|+|+++++||+|++
T Consensus 238 ~~d~~~~~~~~~D~v~~~~vl~~~~~ 263 (374)
T 1qzz_A 238 EGDFFKPLPVTADVVLLSFVLLNWSD 263 (374)
T ss_dssp ECCTTSCCSCCEEEEEEESCGGGSCH
T ss_pred eCCCCCcCCCCCCEEEEeccccCCCH
Confidence 9999998885 999999999999975
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=9.7e-37 Score=275.34 Aligned_cols=236 Identities=21% Similarity=0.353 Sum_probs=212.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCC
Q 042491 14 QAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGS 93 (266)
Q Consensus 14 ~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~ 93 (266)
..++++++.+++.+++|++++++|||++|.. +++|++|||+++|+++.. +.|+||+|++.|+|.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~------l~r~L~~L~~~g~~~~~~----- 86 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEA------LLRLIRHLVAIGLLEEDA----- 86 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEE-----
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHH------HHHHHHHHHHCCCEEecC-----
Confidence 5778999999999999999999999999975 799999999999998766 999999999999999966
Q ss_pred CCceEeCchhchhhhcCCCCChHHHHHHhcChh-hhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHHHHHHH
Q 042491 94 EETMYGLTQISKWLLRDSEMSLAPMILFQNSQL-LQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSFNKAMA 172 (266)
Q Consensus 94 g~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 172 (266)
+++|++|+.+++|+++.+.++..++.+...+. .+..|.+|.+.++++.++|+..+|.++|+++.++|+....|..+|.
T Consensus 87 -~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~ 165 (360)
T 1tw3_A 87 -PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165 (360)
T ss_dssp -TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHT
T ss_pred -CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHH
Confidence 48999999999999888778888887764333 5789999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCC
Q 042491 173 CTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDML 245 (266)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~ 245 (266)
..+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++
T Consensus 166 ~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 243 (360)
T 1tw3_A 166 CDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFF 243 (360)
T ss_dssp TTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 877777778888888 77889999999999999999999999999999999888887664 358999999999
Q ss_pred CCCCC-ccEEEeccccccCCC
Q 042491 246 NAVPN-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 246 ~~~p~-aD~~~l~~vLHd~~~ 265 (266)
+++|. +|+|+++++||+|++
T Consensus 244 ~~~~~~~D~v~~~~vl~~~~~ 264 (360)
T 1tw3_A 244 EPLPRKADAIILSFVLLNWPD 264 (360)
T ss_dssp SCCSSCEEEEEEESCGGGSCH
T ss_pred CCCCCCccEEEEcccccCCCH
Confidence 98885 999999999999974
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=4.5e-36 Score=271.22 Aligned_cols=231 Identities=22% Similarity=0.333 Sum_probs=205.3
Q ss_pred hHHhhHHHHHHHHHHH-hHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccc
Q 042491 7 REDVLRGQAQVWQLMF-AFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFA 85 (266)
Q Consensus 7 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~ 85 (266)
.+++.++..++++++. |++.+++|++++++||||+|++ +|+|++|||+++|++++. +.|+||+|++.|+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~------l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPR------LEMLLETLRQMRVIN 95 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEE
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHH------HHHHHHHHHhCCCeE
Confidence 3567788889999986 8999999999999999999996 799999999999998766 999999999999999
Q ss_pred ccccCCCCCCceEeCchhc-hhhhcCCC---CChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCc
Q 042491 86 AHRSSDGSEETMYGLTQIS-KWLLRDSE---MSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNS 161 (266)
Q Consensus 86 ~~~~~~~~g~~~y~lt~~s-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~ 161 (266)
+.+ ++|++|+.+ ++|+++++ .++++++.+. ....++.|.+|+++++++.+ |+++.++|
T Consensus 96 ~~~-------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p 157 (359)
T 1x19_A 96 LED-------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYP 157 (359)
T ss_dssp EET-------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSS
T ss_pred eeC-------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCc
Confidence 986 799999974 68888777 6888888876 35678999999999998764 67777888
Q ss_pred h---HHHHHHHHHHhhhH-HHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC----
Q 042491 162 Q---FNNSFNKAMACTAK-IVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV---- 233 (266)
Q Consensus 162 ~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---- 233 (266)
+ ..+.|..+|...+. ...+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 235 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHh
Confidence 8 99999999999887 77788999998 78889999999999999999999999999999999998887763
Q ss_pred ---CCCeEEEEccCCC-CCCCccEEEeccccccCCC
Q 042491 234 ---YEGVSHVGGDMLN-AVPNADAVFMKVIVLIQDL 265 (266)
Q Consensus 234 ---~~ri~~~~gd~~~-~~p~aD~~~l~~vLHd~~~ 265 (266)
.+||+++.+|+++ ++|++|+|+++++||+|++
T Consensus 236 ~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d 271 (359)
T 1x19_A 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANE 271 (359)
T ss_dssp TTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCH
T ss_pred cCCCCCEEEEeCccccCCCCCCCEEEEechhccCCH
Confidence 4689999999998 5777899999999999975
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-35 Score=267.36 Aligned_cols=232 Identities=20% Similarity=0.278 Sum_probs=195.9
Q ss_pred hHHhhHHHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccc
Q 042491 7 REDVLRGQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAA 86 (266)
Q Consensus 7 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~ 86 (266)
+.+.+..+..+++++.+++.+++|++++++||||+|. +|+|++|||+++|++++. +.||||+|++.|+|++
T Consensus 18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~------l~rlLr~L~~~gll~~ 88 (352)
T 3mcz_A 18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGK------AAILLHALAALGLLTK 88 (352)
T ss_dssp SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHH------HHHHHHHHHHCCCeEe
Confidence 3344445566999999999999999999999999997 499999999999998876 9999999999999999
Q ss_pred cccCCCCCCceEeCchhch-hhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCch-hhhhhCCCcchhcccCchHH
Q 042491 87 HRSSDGSEETMYGLTQISK-WLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHA-FKKAHGCEMWDFASQNSQFN 164 (266)
Q Consensus 87 ~~~~~~~g~~~y~lt~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~ 164 (266)
.+ ++|++|+.++ +|.++.+.+++.++.++ ...++.|.+|+++++++.+. |+.. .++.++|+..
T Consensus 89 ~~-------~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~ 153 (352)
T 3mcz_A 89 EG-------DAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRAR 153 (352)
T ss_dssp ET-------TEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHH
T ss_pred cC-------CeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHH
Confidence 87 7999999997 67777777888888765 34678999999999998643 3332 1234688999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcccCCCC-CceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCC
Q 042491 165 NSFNKAMACTAKIVMSTLLSHYKDGFDG-IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEG 236 (266)
Q Consensus 165 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~r 236 (266)
+.|.++|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|
T Consensus 154 ~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 230 (352)
T 3mcz_A 154 DAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGR 230 (352)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCc
Confidence 9999999884433 236888888 666 89999999999999999999999999999999998876653 468
Q ss_pred eEEEEccCCCC---CCC-ccEEEeccccccCCC
Q 042491 237 VSHVGGDMLNA---VPN-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 237 i~~~~gd~~~~---~p~-aD~~~l~~vLHd~~~ 265 (266)
|+++.+|++++ .|+ +|+|+++++||+|++
T Consensus 231 v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~ 263 (352)
T 3mcz_A 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDA 263 (352)
T ss_dssp EEEEECCTTCGGGGTTCCEEEEEEESCGGGSCH
T ss_pred eEEEeCCcccCcccCCCCccEEEEecccccCCH
Confidence 99999999994 564 999999999999985
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-35 Score=265.08 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=203.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC
Q 042491 15 AQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE 94 (266)
Q Consensus 15 ~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g 94 (266)
..+++++.|++.+++|++++++|||++|++ +++|++|||+++|++++. +.|+||+|++.|+|++.+
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~------l~r~L~~L~~~g~l~~~~------ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERG------MRMLCDYLVIIGFMTKQA------ 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchH------HHHHHHHHHhcCCeEecC------
Confidence 678999999999999999999999999996 799999999999998766 999999999999998854
Q ss_pred CceEeCchhc-hhhhcCCCCChHHHHHHhcChhhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHHHHHHHh
Q 042491 95 ETMYGLTQIS-KWLLRDSEMSLAPMILFQNSQLLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSFNKAMAC 173 (266)
Q Consensus 95 ~~~y~lt~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 173 (266)
++|++|+.+ ++|+++++.++.+++.++.++..++.|.+|+++++++.++|+ + |+++.++++..+.|.+.|..
T Consensus 74 -~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 74 -EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp -TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred -CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 899999999 688888777888888887554678999999999999887664 3 78888899999999999998
Q ss_pred hhHHHHHHHHhhcccCC--CCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccC
Q 042491 174 TAKIVMSTLLSHYKDGF--DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDM 244 (266)
Q Consensus 174 ~~~~~~~~~~~~~~~~~--~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~ 244 (266)
........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+++.+|+
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 147 MMANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGHHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHhhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 88777788888888 6 7889999999999999999999999999999999988877664 35899999999
Q ss_pred CC-CCCC-ccEEEeccccccCCC
Q 042491 245 LN-AVPN-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 245 ~~-~~p~-aD~~~l~~vLHd~~~ 265 (266)
++ ++|+ +|+|+++++||+|++
T Consensus 225 ~~~~~~~~~D~v~~~~~l~~~~~ 247 (335)
T 2r3s_A 225 FEVDYGNDYDLVLLPNFLHHFDV 247 (335)
T ss_dssp TTSCCCSCEEEEEEESCGGGSCH
T ss_pred ccCCCCCCCcEEEEcchhccCCH
Confidence 98 6775 999999999999963
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.34 E-value=4.7e-12 Score=114.55 Aligned_cols=187 Identities=9% Similarity=0.031 Sum_probs=119.2
Q ss_pred ChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhch-hhhcCCCCCh
Q 042491 37 RLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISK-WLLRDSEMSL 115 (266)
Q Consensus 37 glfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~-~l~~~~~~~~ 115 (266)
++|..| . +|.|+.|||+++|++++. +.++|+.|.+.|+++..+ + |++|+.+. ++....+.+.
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~~~------v~~~L~~l~~~gll~~~~-------~-~~lt~~~~~~l~~~~~~~~ 109 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPLPL------VVAILESLNELGYVTFED-------G-VKLTEKGEELVAEYGIGKR 109 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEECSS-------S-SEECHHHHHHHHHHTCCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCChHH------HHHHHHHHhhCCcEEECC-------C-EEECHHHHHHHHhcCcccc
Confidence 789999 4 689999999999999876 999999999999998754 5 99999775 5554222111
Q ss_pred HHHHHH-hcC-h----hhhhhhhhhHHHHhcCCchhhhhhCCCcchhcccCchHHHHHHHHHHhhhHHHHHHHHhhcccC
Q 042491 116 APMILF-QNS-Q----LLQAPCHHLSQCVEEGGHAFKKAHGCEMWDFASQNSQFNNSFNKAMACTAKIVMSTLLSHYKDG 189 (266)
Q Consensus 116 ~~~~~~-~~~-~----~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~ 189 (266)
.+.+.. ..+ . .....|..+.+.++....+- . .|+.....+.. .....+ .... ..
T Consensus 110 ~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~l---------~~~~-~~-- 169 (373)
T 2qm3_A 110 YDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-H-----EFDQAYVTPET--TVARVI---------LMHT-RG-- 169 (373)
T ss_dssp CC------------CGGGHHHHHHHHHHHTTCCCCC-G-----GGTCCCBCHHH--HHHHHH---------HHHH-TT--
T ss_pred ccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-h-----hcCCeecCHHH--HHHHHH---------HHhh-cC--
Confidence 111100 000 0 11123455556665432211 1 11110001111 111110 0011 11
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC-----CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP-----NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-----~aD~~~l~ 257 (266)
.....+||||| |+|.++..+++..|+.+++++|+ |.+++.+++ .+||+++.+|+.+++| .+|+|++.
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 12457999999 99999999999999899999998 888887764 2389999999988544 39999997
Q ss_pred cccc
Q 042491 258 VIVL 261 (266)
Q Consensus 258 ~vLH 261 (266)
..+|
T Consensus 249 ~p~~ 252 (373)
T 2qm3_A 249 PPET 252 (373)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 6554
No 18
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.08 E-value=6.7e-10 Score=95.63 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC--CCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCCCccEEEecc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY--PHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVPNADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p~aD~~~l~~ 258 (266)
.....+|||||||+|..+..+++++ |+++++++|+ |.+++.+++ ..+|+++.+|+.+ +++.+|++++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3466899999999999999999986 6789999998 888877653 4689999999988 677899999999
Q ss_pred ccccCC
Q 042491 259 IVLIQD 264 (266)
Q Consensus 259 vLHd~~ 264 (266)
+||..+
T Consensus 148 ~l~~~~ 153 (261)
T 4gek_A 148 TLQFLE 153 (261)
T ss_dssp CGGGSC
T ss_pred eeeecC
Confidence 999764
No 19
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.98 E-value=1.9e-09 Score=90.30 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=68.6
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCCC-cc
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVPN-AD 252 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p~-aD 252 (266)
..++..+.. .....+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +.++ +|
T Consensus 33 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD 111 (234)
T 3dtn_A 33 GVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD 111 (234)
T ss_dssp HHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEE
T ss_pred HHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCce
Confidence 334444431 24568999999999999999999999999999998 777766553 3489999999998 4554 99
Q ss_pred EEEeccccccCCC
Q 042491 253 AVFMKVIVLIQDL 265 (266)
Q Consensus 253 ~~~l~~vLHd~~~ 265 (266)
+|++..++|.+++
T Consensus 112 ~v~~~~~l~~~~~ 124 (234)
T 3dtn_A 112 MVVSALSIHHLED 124 (234)
T ss_dssp EEEEESCGGGSCH
T ss_pred EEEEeCccccCCH
Confidence 9999999998863
No 20
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.93 E-value=1.7e-09 Score=89.89 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEecccccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVP--NADAVFMKVIVLI 262 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd 262 (266)
...+|||||||+|.++..+++..| +++++|+ |.+++.+++ ..+++++.+|+.+ ++| .+|++++..++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 467999999999999999999988 8999998 777776654 3789999999988 555 3999999999665
Q ss_pred CC
Q 042491 263 QD 264 (266)
Q Consensus 263 ~~ 264 (266)
+.
T Consensus 116 ~~ 117 (227)
T 1ve3_A 116 FE 117 (227)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 21
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.93 E-value=5.2e-09 Score=89.49 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=68.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN-AVP--NADAVFM 256 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~-~~p--~aD~~~l 256 (266)
.++..++ .....+|||||||+|.++..+++ |+.+++++|+ |.+++.++...+++++.+|+.+ ++| .+|+|++
T Consensus 25 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 25 AIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 4455555 55678999999999999999998 7889999998 7888877776699999999988 565 3999999
Q ss_pred ccccccCCC
Q 042491 257 KVIVLIQDL 265 (266)
Q Consensus 257 ~~vLHd~~~ 265 (266)
.+++|.+.+
T Consensus 101 ~~~l~~~~~ 109 (261)
T 3ege_A 101 ILAIHHFSH 109 (261)
T ss_dssp ESCGGGCSS
T ss_pred cchHhhccC
Confidence 999998865
No 22
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.90 E-value=2.7e-09 Score=87.89 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=66.7
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC-
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP- 249 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p- 249 (266)
..++..++ ..+. +|||||||+|.++..+++. |+.+++++|. |.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34455554 3343 9999999999999999999 8899999998 777776654 4689999999998 666
Q ss_pred -CccEEEeccccccCCC
Q 042491 250 -NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 -~aD~~~l~~vLHd~~~ 265 (266)
.+|+|++..++|.+.+
T Consensus 110 ~~~D~v~~~~~l~~~~~ 126 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWED 126 (219)
T ss_dssp TCEEEEEEESCGGGCSC
T ss_pred ccccEEEECchHhhccC
Confidence 3999999999998864
No 23
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.88 E-value=2.7e-09 Score=90.94 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=67.4
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCC-
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVP- 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p- 249 (266)
...++..++ .....+|||||||+|.++..+++..+ +++++|+ |.+++.+++ .++++++.+|+.+ ++|
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 344555565 55778999999999999999999986 8999998 777776653 3679999999988 666
Q ss_pred -CccEEEeccccccCCC
Q 042491 250 -NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 -~aD~~~l~~vLHd~~~ 265 (266)
.+|+|++..++|.+++
T Consensus 102 ~~fD~V~~~~~l~~~~d 118 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPN 118 (260)
T ss_dssp TCEEEEEEESCGGGCSC
T ss_pred CCEEEEEEhhhhHhcCC
Confidence 3999999999999875
No 24
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.87 E-value=1.2e-08 Score=88.42 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=64.5
Q ss_pred CCceEEEecCCc---hHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCCC------------C--C
Q 042491 192 GIRSLVDVGGGT---GEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLNA------------V--P 249 (266)
Q Consensus 192 ~~~~vvDvGgG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~------------~--p 249 (266)
+..+|||||||+ |.+...+.+.+|+.+++.+|+ |.+++.+++ .++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 568999999999 999888889999999999999 888887764 47899999999862 2 2
Q ss_pred CccEEEeccccccCCC
Q 042491 250 NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 ~aD~~~l~~vLHd~~~ 265 (266)
.+|++++..+||.+++
T Consensus 157 ~~d~v~~~~vlh~~~d 172 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSP 172 (274)
T ss_dssp SCCEEEETTTGGGSCT
T ss_pred CCEEEEEechhhhCCc
Confidence 5899999999999876
No 25
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.86 E-value=9e-09 Score=87.24 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=66.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCCC-
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVPN- 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p~- 250 (266)
.++..++ .....+|||||||+|.++..+++.+ +.+++++|+ |.+++.+++ .++|+++.+|+.+ +.++
T Consensus 27 ~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 27 TLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 4455555 5667899999999999999999998 678999998 777776653 3689999999988 3433
Q ss_pred ccEEEeccccccCCC
Q 042491 251 ADAVFMKVIVLIQDL 265 (266)
Q Consensus 251 aD~~~l~~vLHd~~~ 265 (266)
+|+|++..++|.+++
T Consensus 104 fD~V~~~~~~~~~~~ 118 (256)
T 1nkv_A 104 CDVAACVGATWIAGG 118 (256)
T ss_dssp EEEEEEESCGGGTSS
T ss_pred CCEEEECCChHhcCC
Confidence 999999999998865
No 26
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.84 E-value=1.2e-08 Score=88.69 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHhhc----ccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-
Q 042491 180 STLLSHY----KDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN- 246 (266)
Q Consensus 180 ~~~~~~~----~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~- 246 (266)
..++..+ + +....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++|+++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 3455555 3 5677899999999999999999987 459999998 667666543 3789999999998
Q ss_pred CCC--CccEEEeccccccCCC
Q 042491 247 AVP--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 247 ~~p--~aD~~~l~~vLHd~~~ 265 (266)
++| .+|+|++..++|++++
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~ 165 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPD 165 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSC
T ss_pred CCCCCCEeEEEecchhhhcCC
Confidence 665 3999999999999875
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.83 E-value=1.6e-08 Score=86.62 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=68.6
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p 249 (266)
...+++.++ .....+|||||||+|.++..+++.+ ..+++++|+ +..++.+++ .+|++++.+|+.+ ++|
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 345566666 6677899999999999999999987 679999998 666665543 4689999999988 665
Q ss_pred --CccEEEeccccccCCC
Q 042491 250 --NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 --~aD~~~l~~vLHd~~~ 265 (266)
.+|+|++..++|..++
T Consensus 127 ~~~fD~v~~~~~l~~~~~ 144 (273)
T 3bus_A 127 DASFDAVWALESLHHMPD 144 (273)
T ss_dssp TTCEEEEEEESCTTTSSC
T ss_pred CCCccEEEEechhhhCCC
Confidence 3999999999998764
No 28
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.82 E-value=9.1e-09 Score=88.33 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC-CCCC--ccEEEeccccccCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN-AVPN--ADAVFMKVIVLIQD 264 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~-~~p~--aD~~~l~~vLHd~~ 264 (266)
...+|||||||+|.++..|++.+. +++++|. +.+++.+++.++|+++.+|+.+ ++|. +|+|++..++|..+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~ 113 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD 113 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh
Confidence 457999999999999999998874 6889998 8889998888899999999988 6773 99999999998654
No 29
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.82 E-value=6.3e-09 Score=86.12 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCCC-
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVPN- 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p~- 250 (266)
.++..++ .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ .++++++.+|+.+ +++.
T Consensus 28 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 28 KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 4455555 5677899999999999999999997 8899999998 777776654 3589999999988 5553
Q ss_pred -ccEEEeccccccCCC
Q 042491 251 -ADAVFMKVIVLIQDL 265 (266)
Q Consensus 251 -aD~~~l~~vLHd~~~ 265 (266)
+|+|++..++|.+.+
T Consensus 106 ~fD~v~~~~~l~~~~~ 121 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE 121 (219)
T ss_dssp CEEEEEEESCGGGCSS
T ss_pred CeeEEEeehhhhhcCC
Confidence 999999999998864
No 30
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.80 E-value=2.1e-08 Score=82.61 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCCCCC--CccEEE
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLNAVP--NADAVF 255 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~~p--~aD~~~ 255 (266)
.++..+.. .....+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+..+ .+|+++
T Consensus 36 ~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLRA-GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 34444431 345579999999999999999999 568999998 777777665 3789999999988644 399999
Q ss_pred eccccccCCC
Q 042491 256 MKVIVLIQDL 265 (266)
Q Consensus 256 l~~vLHd~~~ 265 (266)
+..+||.+++
T Consensus 113 ~~~~l~~~~~ 122 (218)
T 3ou2_A 113 FAHWLAHVPD 122 (218)
T ss_dssp EESCGGGSCH
T ss_pred EechhhcCCH
Confidence 9999998764
No 31
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.80 E-value=1.4e-08 Score=85.68 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCC-
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVP- 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p- 249 (266)
...++...+ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 10 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 10 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred cchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 445666666 67788999999999999999999986 8899998 777776553 3689999999987 555
Q ss_pred -CccEEEeccccccCCC
Q 042491 250 -NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 -~aD~~~l~~vLHd~~~ 265 (266)
.+|+|++..++|.|++
T Consensus 86 ~~fD~v~~~~~l~~~~~ 102 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSD 102 (239)
T ss_dssp TCEEEEEEESCGGGCSC
T ss_pred CcEEEEEECCchhhccC
Confidence 3999999999999875
No 32
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.79 E-value=1.1e-08 Score=86.78 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=68.9
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC-CccEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP-NADAVFM 256 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p-~aD~~~l 256 (266)
.++..++ .....+|||||||+|.++..+++.+|..+++++|+ |.+++.+++ .++++++.+|+.+ +.+ .+|+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4555555 55678999999999999999999999999999998 777776654 5789999999987 422 3999999
Q ss_pred ccccccCCC
Q 042491 257 KVIVLIQDL 265 (266)
Q Consensus 257 ~~vLHd~~~ 265 (266)
..++|..++
T Consensus 102 ~~~l~~~~~ 110 (259)
T 2p35_A 102 NAVFQWVPD 110 (259)
T ss_dssp ESCGGGSTT
T ss_pred eCchhhCCC
Confidence 999998754
No 33
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.79 E-value=1.7e-08 Score=85.50 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=66.9
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC-CCC--CccE
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN-AVP--NADA 253 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~-~~p--~aD~ 253 (266)
.+...++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+|+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3455454 346689999999999999999999776 8999998 777776654 5789999999987 565 3999
Q ss_pred EEeccccccCCC
Q 042491 254 VFMKVIVLIQDL 265 (266)
Q Consensus 254 ~~l~~vLHd~~~ 265 (266)
|++..++|.+.+
T Consensus 112 v~~~~~l~~~~~ 123 (253)
T 3g5l_A 112 VLSSLALHYIAS 123 (253)
T ss_dssp EEEESCGGGCSC
T ss_pred EEEchhhhhhhh
Confidence 999999998854
No 34
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.79 E-value=1.3e-08 Score=87.39 Aligned_cols=76 Identities=13% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEeccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVP--NADAVFMKVI 259 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p--~aD~~~l~~v 259 (266)
+....+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+.+ +++ .+|+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45678999999999999999999999999999998 777776553 3579999999998 555 3999999999
Q ss_pred cccCCC
Q 042491 260 VLIQDL 265 (266)
Q Consensus 260 LHd~~~ 265 (266)
||.+++
T Consensus 115 l~~~~~ 120 (276)
T 3mgg_A 115 LEHLQS 120 (276)
T ss_dssp GGGCSC
T ss_pred hhhcCC
Confidence 998865
No 35
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.79 E-value=4e-08 Score=86.21 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEc
Q 042491 171 MACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGG 242 (266)
Q Consensus 171 m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~g 242 (266)
+..........+++.++ .+....+|||||||+|.++..+++++ ..+++++|+ +.+++.+++ .++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 44444444455666554 14566899999999999999999986 578999998 777776653 368999999
Q ss_pred cCCC-CCC--CccEEEeccccccCC
Q 042491 243 DMLN-AVP--NADAVFMKVIVLIQD 264 (266)
Q Consensus 243 d~~~-~~p--~aD~~~l~~vLHd~~ 264 (266)
|+.+ +++ .+|+|++..++|.++
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~ 199 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD 199 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC
Confidence 9998 565 399999999999873
No 36
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.78 E-value=1.2e-08 Score=88.35 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEecccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-ADAVFMKVIV 260 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD~~~l~~vL 260 (266)
.....+|||||||+|.++..+++.+|+ .+++++|+ |.+++.+++ ..+++++.+|+.+ +.++ +|+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999995 89999998 666765543 3489999999998 4555 9999999999
Q ss_pred ccCCC
Q 042491 261 LIQDL 265 (266)
Q Consensus 261 Hd~~~ 265 (266)
|.+++
T Consensus 100 ~~~~~ 104 (284)
T 3gu3_A 100 LHMTT 104 (284)
T ss_dssp GGCSS
T ss_pred hcCCC
Confidence 98865
No 37
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.77 E-value=8.9e-09 Score=85.36 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------C----CCeEEEEccCCC-CCC--CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------Y----EGVSHVGGDMLN-AVP--NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~----~ri~~~~gd~~~-~~p--~aD~~~ 255 (266)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .+|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3567999999999999999999999999999998 777776653 1 289999999966 333 499999
Q ss_pred eccccccCC
Q 042491 256 MKVIVLIQD 264 (266)
Q Consensus 256 l~~vLHd~~ 264 (266)
+..++|.++
T Consensus 108 ~~~~l~~~~ 116 (219)
T 3jwg_A 108 VIEVIEHLD 116 (219)
T ss_dssp EESCGGGCC
T ss_pred EHHHHHhCC
Confidence 999999876
No 38
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.77 E-value=1.5e-08 Score=83.98 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=62.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCC-CCC--CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLN-AVP--NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~-~~p--~aD~~~ 255 (266)
.+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..+++++.+|+.. +.+ .+|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 3557999999999999999999999999999998 777766543 1289999999866 333 499999
Q ss_pred eccccccCC
Q 042491 256 MKVIVLIQD 264 (266)
Q Consensus 256 l~~vLHd~~ 264 (266)
+..++|.++
T Consensus 108 ~~~~l~~~~ 116 (217)
T 3jwh_A 108 VIEVIEHLD 116 (217)
T ss_dssp EESCGGGCC
T ss_pred eHHHHHcCC
Confidence 999999875
No 39
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.75 E-value=2.9e-08 Score=86.56 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCCC-
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVPN- 250 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~- 250 (266)
..++..++ .....+|||||||+|.++..+++.+| .+++++|+ |.+++.+++ .++|+++.+|+.+- ++
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 44566665 66778999999999999999999988 89999998 777776653 35899999999764 54
Q ss_pred ccEEEeccccccCCC
Q 042491 251 ADAVFMKVIVLIQDL 265 (266)
Q Consensus 251 aD~~~l~~vLHd~~~ 265 (266)
+|+|++..++|.+++
T Consensus 138 fD~v~~~~~~~~~~d 152 (302)
T 3hem_A 138 VDRIVSLGAFEHFAD 152 (302)
T ss_dssp CSEEEEESCGGGTTC
T ss_pred ccEEEEcchHHhcCc
Confidence 999999999998843
No 40
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.74 E-value=2.3e-08 Score=84.95 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=67.3
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC--Cc
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP--NA 251 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p--~a 251 (266)
..++..++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ ++| .+
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 44555555 5677899999999999999999998 779999998 777766553 3789999999998 565 39
Q ss_pred cEEEeccccccC
Q 042491 252 DAVFMKVIVLIQ 263 (266)
Q Consensus 252 D~~~l~~vLHd~ 263 (266)
|+|++..++|.+
T Consensus 122 D~v~~~~~l~~~ 133 (266)
T 3ujc_A 122 DLIYSRDAILAL 133 (266)
T ss_dssp EEEEEESCGGGS
T ss_pred EEEeHHHHHHhc
Confidence 999999999987
No 41
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.74 E-value=3.4e-08 Score=83.65 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=64.8
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC--C
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP--N 250 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p--~ 250 (266)
++..+. ......+|||||||+|.++..+++.+|. +++++|+ |.+++.+++ .+|++++.+|+.+ +++ .
T Consensus 37 ~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 37 AVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 444443 1456679999999999999999999997 9999998 777766543 4679999999977 555 3
Q ss_pred ccEEEeccccccC
Q 042491 251 ADAVFMKVIVLIQ 263 (266)
Q Consensus 251 aD~~~l~~vLHd~ 263 (266)
+|+|++..++|..
T Consensus 115 fD~v~~~~~l~~~ 127 (257)
T 3f4k_A 115 LDLIWSEGAIYNI 127 (257)
T ss_dssp EEEEEEESCSCCC
T ss_pred EEEEEecChHhhc
Confidence 9999999999986
No 42
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.72 E-value=1.8e-08 Score=83.45 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-CCC-CccEEEeccccccCCC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-AVP-NADAVFMKVIVLIQDL 265 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~~p-~aD~~~l~~vLHd~~~ 265 (266)
....+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .+|++++..+||.+++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCH
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCCh
Confidence 35679999999999999999998 568999998 777776654 2589999999998 555 4999999999998764
No 43
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.71 E-value=3e-08 Score=85.38 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=66.4
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCCC-ccEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVPN-ADAVFM 256 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p~-aD~~~l 256 (266)
.+++.++ .....+|||||||+|.++..+++ |..+++++|+ |.+++.+++ .++++++.+|+.+ ++++ +|+|++
T Consensus 48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 3445555 45668999999999999999998 8889999998 777776654 4789999999988 4554 999999
Q ss_pred ccccccCCC
Q 042491 257 KVIVLIQDL 265 (266)
Q Consensus 257 ~~vLHd~~~ 265 (266)
..++|...+
T Consensus 124 ~~~l~~~~d 132 (279)
T 3ccf_A 124 NAMLHWVKE 132 (279)
T ss_dssp ESCGGGCSC
T ss_pred cchhhhCcC
Confidence 999998764
No 44
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.70 E-value=4.2e-08 Score=83.89 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEecc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP--NADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p--~aD~~~l~~ 258 (266)
.....+|||||||+|.++..+++. |..+++++|+ |.+++.+++ .++|+++.+|+.+ +++ .+|+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999999 8899999998 777766553 3789999999987 555 399999999
Q ss_pred ccccC
Q 042491 259 IVLIQ 263 (266)
Q Consensus 259 vLHd~ 263 (266)
++|.+
T Consensus 123 ~~~~~ 127 (267)
T 3kkz_A 123 AIYNI 127 (267)
T ss_dssp CGGGT
T ss_pred Cceec
Confidence 99986
No 45
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.70 E-value=1.3e-08 Score=86.03 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=66.1
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC--Cc
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP--NA 251 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p--~a 251 (266)
..++..++ .....+|||||||+|.++..+++.. ..+++++|. +.+++.+++ ..+++++.+|+.+ ++| .+
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555555 4567899999999999999999887 557999997 777776654 3689999999987 555 39
Q ss_pred cEEEeccccccCC
Q 042491 252 DAVFMKVIVLIQD 264 (266)
Q Consensus 252 D~~~l~~vLHd~~ 264 (266)
|+|++..+||.++
T Consensus 160 D~v~~~~~l~~~~ 172 (254)
T 1xtp_A 160 DLIVIQWTAIYLT 172 (254)
T ss_dssp EEEEEESCGGGSC
T ss_pred EEEEEcchhhhCC
Confidence 9999999999874
No 46
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.69 E-value=3.5e-08 Score=82.74 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=64.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC-CCC--CccE
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN-AVP--NADA 253 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~-~~p--~aD~ 253 (266)
.+...++ .....+|||||||+|.++..+++..+ .+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444454 34568999999999999999998843 38999998 777776553 3579999999988 555 3999
Q ss_pred EEeccccccCCC
Q 042491 254 VFMKVIVLIQDL 265 (266)
Q Consensus 254 ~~l~~vLHd~~~ 265 (266)
|++..++|.+++
T Consensus 111 v~~~~~l~~~~~ 122 (243)
T 3bkw_A 111 AYSSLALHYVED 122 (243)
T ss_dssp EEEESCGGGCSC
T ss_pred EEEeccccccch
Confidence 999999998764
No 47
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.69 E-value=4.6e-08 Score=83.40 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCCC-ccEEEecc-ccccCC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVPN-ADAVFMKV-IVLIQD 264 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p~-aD~~~l~~-vLHd~~ 264 (266)
.+..+|||||||+|.++..+++..+ +++++|+ |.+++.+++ ..+++++.+|+.+ +.++ +|+|++.. +||...
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4568999999999999999999865 7899998 888877765 5689999999998 4554 99999997 998763
No 48
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.68 E-value=2.1e-08 Score=87.40 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=37.2
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP 232 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 232 (266)
+....+|||||||+|.++..+++.+|..+++++|+ +.+++.++
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34568999999999999999999999999999998 66666544
No 49
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.66 E-value=5.9e-08 Score=84.49 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC--------CCCeEEEEccCCC-CCC--------Cc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV--------YEGVSHVGGDMLN-AVP--------NA 251 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~-~~p--------~a 251 (266)
....+|||||||+|.++..+++.+ |..+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999997 8999999998 777776643 4689999999988 432 39
Q ss_pred cEEEeccccccC
Q 042491 252 DAVFMKVIVLIQ 263 (266)
Q Consensus 252 D~~~l~~vLHd~ 263 (266)
|+|++..++|..
T Consensus 115 D~V~~~~~l~~~ 126 (299)
T 3g5t_A 115 DMITAVECAHWF 126 (299)
T ss_dssp EEEEEESCGGGS
T ss_pred eEEeHhhHHHHh
Confidence 999999999986
No 50
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.66 E-value=1.1e-08 Score=89.54 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=64.2
Q ss_pred CCCCceEEEecCCchHHHHHHH-HHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEecc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIV-EFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVPN-ADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p~-aD~~~l~~ 258 (266)
.....+|||||||+|.++..++ +.+|+.+++++|+ |.+++.+++ .+||+++.+|+.+ ++++ +|+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 7889999999998 777776653 3569999999998 4554 99999999
Q ss_pred ccccCCC
Q 042491 259 IVLIQDL 265 (266)
Q Consensus 259 vLHd~~~ 265 (266)
++|.+.+
T Consensus 196 ~~~~~~~ 202 (305)
T 3ocj_A 196 LNIYEPD 202 (305)
T ss_dssp SGGGCCC
T ss_pred hhhhcCC
Confidence 9998754
No 51
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.65 E-value=1.2e-07 Score=77.83 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCC---CC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAV---PN 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p~ 250 (266)
.++..++ .....+|||||||+|.++..+++.+|..+++++|. |++++.+++ .++++++.+|+.+.+ +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3455555 56678999999999999999999999999999998 777776654 378999999998743 35
Q ss_pred ccEEEecccccc
Q 042491 251 ADAVFMKVIVLI 262 (266)
Q Consensus 251 aD~~~l~~vLHd 262 (266)
+|++++...+++
T Consensus 109 ~D~i~~~~~~~~ 120 (204)
T 3e05_A 109 PDRVFIGGSGGM 120 (204)
T ss_dssp CSEEEESCCTTC
T ss_pred CCEEEECCCCcC
Confidence 999999887663
No 52
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.65 E-value=5.1e-08 Score=81.72 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC-CCC--CccEEEeccccccC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN-AVP--NADAVFMKVIVLIQ 263 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd~ 263 (266)
....+|||||||+|.++..+++. +.+++++|. |.+++.+++ ..+++++.+|+.+ ++| .+|++++.+++|.+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 35679999999999999999998 568999998 777776654 5789999999998 565 39999999999987
Q ss_pred CC
Q 042491 264 DL 265 (266)
Q Consensus 264 ~~ 265 (266)
++
T Consensus 130 ~~ 131 (242)
T 3l8d_A 130 EE 131 (242)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 53
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.64 E-value=9.3e-08 Score=82.53 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=65.4
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC-C
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP-N 250 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-~ 250 (266)
..+++.++ .....+|||||||+|.++..++++++. +++++|+ |..++.+++ .++++++.+|+.+ +| .
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 44566665 566789999999999999999988765 9999998 676665543 3689999999965 44 4
Q ss_pred ccEEEeccccccCC
Q 042491 251 ADAVFMKVIVLIQD 264 (266)
Q Consensus 251 aD~~~l~~vLHd~~ 264 (266)
+|+|++..+||.++
T Consensus 130 fD~v~~~~~l~~~~ 143 (287)
T 1kpg_A 130 VDRIVSIGAFEHFG 143 (287)
T ss_dssp CSEEEEESCGGGTC
T ss_pred eeEEEEeCchhhcC
Confidence 99999999999884
No 54
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.64 E-value=1e-07 Score=80.86 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEecccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVP--NADAVFMKVIV 260 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p--~aD~~~l~~vL 260 (266)
.....+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+ +++ .+|++++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 568999998 666665442 4789999999977 555 39999999999
Q ss_pred ccCCC
Q 042491 261 LIQDL 265 (266)
Q Consensus 261 Hd~~~ 265 (266)
|.+++
T Consensus 115 ~~~~~ 119 (263)
T 2yqz_A 115 HLVPD 119 (263)
T ss_dssp GGCTT
T ss_pred hhcCC
Confidence 98764
No 55
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.63 E-value=3.3e-08 Score=82.81 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCCCCC-C-ccEEEeccccccCCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLNAVP-N-ADAVFMKVIVLIQDL 265 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~~p-~-aD~~~l~~vLHd~~~ 265 (266)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+..+ + +|+|++.++||..++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 457899999999999999999987 6888898 677766654 2289999999988534 3 999999999998865
No 56
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.62 E-value=7.7e-08 Score=80.91 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=62.5
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC---CCC--CccE
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN---AVP--NADA 253 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~---~~p--~aD~ 253 (266)
..+...++ .+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ ++| .+|+
T Consensus 30 ~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 30 ARLRRYIP-YFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHGGGGG-GTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHh-hhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 33344343 1456689999999999999999998 457899998 7777766543 9999999877 555 3999
Q ss_pred EEeccccccCC
Q 042491 254 VFMKVIVLIQD 264 (266)
Q Consensus 254 ~~l~~vLHd~~ 264 (266)
|++..+||.++
T Consensus 105 i~~~~~l~~~~ 115 (240)
T 3dli_A 105 VMISHFVEHLD 115 (240)
T ss_dssp EEEESCGGGSC
T ss_pred EEECCchhhCC
Confidence 99999999876
No 57
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.62 E-value=5.9e-08 Score=83.12 Aligned_cols=83 Identities=10% Similarity=0.120 Sum_probs=65.5
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeecHH-------HHhhCCC-------CCCeEEEEcc-C
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDLPH-------VVATAPV-------YEGVSHVGGD-M 244 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~-------v~~~a~~-------~~ri~~~~gd-~ 244 (266)
.+++.++ .....+|||||||+|.++..+++++ |+.+++++|+.. +++.+++ .++|+++.+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 4556665 6677899999999999999999996 889999999843 5555443 2689999998 6
Q ss_pred CC---CCC--CccEEEeccccccCCC
Q 042491 245 LN---AVP--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 245 ~~---~~p--~aD~~~l~~vLHd~~~ 265 (266)
.. +++ .+|+|++..++|.+++
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~ 137 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFAS 137 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSC
T ss_pred hhccCCCCCCCEEEEEEccchhhCCC
Confidence 54 234 3999999999998764
No 58
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.61 E-value=4.4e-08 Score=80.74 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=59.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------------------CCCeEEEEccCCC-CCC
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------------------YEGVSHVGGDMLN-AVP 249 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gd~~~-~~p 249 (266)
.....+|||||||+|..+..|++. ..+++++|+ +.+++.+++ ..+|+++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456689999999999999999998 468999998 777776543 2589999999998 443
Q ss_pred ---CccEEEeccccccCC
Q 042491 250 ---NADAVFMKVIVLIQD 264 (266)
Q Consensus 250 ---~aD~~~l~~vLHd~~ 264 (266)
.+|+|+.+.++|..+
T Consensus 98 ~~~~fD~v~~~~~l~~l~ 115 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALP 115 (203)
T ss_dssp HHHSEEEEEEESCGGGSC
T ss_pred cCCCEEEEEECcchhhCC
Confidence 499999998888754
No 59
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.60 E-value=7.6e-08 Score=76.72 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=61.7
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC----
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP---- 249 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---- 249 (266)
++..++ .....+|||||||+|.++..+++.+|..+++++|. |.+++.+++ .+++ ++.+|..+.+|
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 444455 55668999999999999999999999999999998 667766553 3488 88899877533
Q ss_pred CccEEEecccccc
Q 042491 250 NADAVFMKVIVLI 262 (266)
Q Consensus 250 ~aD~~~l~~vLHd 262 (266)
.+|++++...+|.
T Consensus 94 ~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 94 NPDVIFIGGGLTA 106 (178)
T ss_dssp CCSEEEECC-TTC
T ss_pred CCCEEEECCcccH
Confidence 4999999998875
No 60
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.59 E-value=1.3e-07 Score=76.64 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=63.3
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCCC-cc
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVPN-AD 252 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p~-aD 252 (266)
+++.++ .....+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+ +.++ +|
T Consensus 24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 444444 445679999999999999999988 569999998 777776653 3479999999988 4443 99
Q ss_pred EEEeccccccCC
Q 042491 253 AVFMKVIVLIQD 264 (266)
Q Consensus 253 ~~~l~~vLHd~~ 264 (266)
++++..++|.++
T Consensus 100 ~v~~~~~l~~~~ 111 (199)
T 2xvm_A 100 FILSTVVLMFLE 111 (199)
T ss_dssp EEEEESCGGGSC
T ss_pred EEEEcchhhhCC
Confidence 999999999875
No 61
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.58 E-value=4.1e-08 Score=82.58 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=66.1
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC--
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP-- 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-- 249 (266)
...+++.++ .....+|||||||+|.++..+++..| .+++++|. |.+++.+++ .++++++.+|+..++|
T Consensus 80 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 344555555 56678999999999999999999998 89999996 777766653 3569999999866665
Q ss_pred C-ccEEEeccccccCC
Q 042491 250 N-ADAVFMKVIVLIQD 264 (266)
Q Consensus 250 ~-aD~~~l~~vLHd~~ 264 (266)
+ +|+|++...+|.+.
T Consensus 157 ~~fD~Ii~~~~~~~~~ 172 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIP 172 (235)
T ss_dssp CCEEEEEECSBBSSCC
T ss_pred CCccEEEECCcHHHHH
Confidence 2 89999999988764
No 62
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.57 E-value=9e-08 Score=86.57 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=63.4
Q ss_pred CCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCCC--------------CCeEEEEccCCC-------CC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPVY--------------EGVSHVGGDMLN-------AV 248 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gd~~~-------~~ 248 (266)
...+|||||||+|.++..+++.+ |+.+++++|+ |.+++.+++. ++|+++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45799999999999999999997 8899999998 7777766531 699999999987 55
Q ss_pred C--CccEEEeccccccCCC
Q 042491 249 P--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 249 p--~aD~~~l~~vLHd~~~ 265 (266)
| .+|+|++..++|.+++
T Consensus 163 ~~~~fD~V~~~~~l~~~~d 181 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTN 181 (383)
T ss_dssp CTTCEEEEEEESCGGGCSC
T ss_pred CCCCEEEEEEccchhcCCC
Confidence 5 3999999999998865
No 63
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.57 E-value=1.1e-07 Score=78.33 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCCCCC--CccEEEecccccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLNAVP--NADAVFMKVIVLI 262 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p--~aD~~~l~~vLHd 262 (266)
.....+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+..| .+|+|++..++|.
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456899999999999999999986 37899998 667765543 4689999999998433 3999999999998
Q ss_pred CCC
Q 042491 263 QDL 265 (266)
Q Consensus 263 ~~~ 265 (266)
.++
T Consensus 127 ~~~ 129 (216)
T 3ofk_A 127 LED 129 (216)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 64
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.57 E-value=2.9e-08 Score=78.88 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred HhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCCCCC--CccEEEecc
Q 042491 183 LSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLNAVP--NADAVFMKV 258 (266)
Q Consensus 183 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p--~aD~~~l~~ 258 (266)
++.++ .....+|||||||+|.++..+++... +++++|. +.+++.+++ .++++++.+| .+++ .+|++++..
T Consensus 10 ~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 10 LPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp HHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 44444 55678999999999999999999984 8999998 777776655 6799999999 4454 499999999
Q ss_pred ccccCCC
Q 042491 259 IVLIQDL 265 (266)
Q Consensus 259 vLHd~~~ 265 (266)
++|.+.+
T Consensus 84 ~l~~~~~ 90 (170)
T 3i9f_A 84 SFHDMDD 90 (170)
T ss_dssp CSTTCSC
T ss_pred chhcccC
Confidence 9998754
No 65
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.56 E-value=9.1e-08 Score=86.94 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=63.2
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---------------CCCeEEEEcc
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---------------YEGVSHVGGD 243 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~ri~~~~gd 243 (266)
..++..++ .....+|||||||+|..+..+++.++.-+++++|+ |.+++.++. .++|+++.||
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555565 66778999999999999999999988778999998 444444321 3789999999
Q ss_pred CCC-CC----CCccEEEeccccc
Q 042491 244 MLN-AV----PNADAVFMKVIVL 261 (266)
Q Consensus 244 ~~~-~~----p~aD~~~l~~vLH 261 (266)
+++ ++ +.+|+|++.+++|
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F 263 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF 263 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC
T ss_pred ccCCccccccCCccEEEEccccc
Confidence 998 44 3599999988765
No 66
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.56 E-value=1.8e-07 Score=81.98 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP- 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p- 249 (266)
...+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ |.+++.+++ .++++++.+|+.+ +|
T Consensus 79 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (318)
T 2fk8_A 79 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 154 (318)
T ss_dssp HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCC
Confidence 345566665 5667899999999999999999987 569999998 777766553 3679999999866 44
Q ss_pred CccEEEeccccccCC
Q 042491 250 NADAVFMKVIVLIQD 264 (266)
Q Consensus 250 ~aD~~~l~~vLHd~~ 264 (266)
.+|+|++..++|..+
T Consensus 155 ~fD~v~~~~~l~~~~ 169 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFG 169 (318)
T ss_dssp CCSEEEEESCGGGTC
T ss_pred CcCEEEEeChHHhcC
Confidence 499999999999874
No 67
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.55 E-value=2.2e-07 Score=74.29 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCCCCC-C-ccEEEeccccccCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLNAVP-N-ADAVFMKVIVLIQD 264 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p-~-aD~~~l~~vLHd~~ 264 (266)
...+|||||||+|.++..+++.. +++++|+ |.+++. .++++++.+|+.++++ + +|++++.-.+|..+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~ 92 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDT 92 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCC
Confidence 44699999999999999999988 9999998 777776 5789999999999766 3 99999988777543
No 68
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.55 E-value=2.6e-07 Score=77.15 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=59.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCCC-ccEEE-eccccccC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVPN-ADAVF-MKVIVLIQ 263 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p~-aD~~~-l~~vLHd~ 263 (266)
.+..+|||||||+|.++..+++.++ +++++|. |.+++.+++ .++++++.+|+.+ +.++ +|+|+ +..++|..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhc
Confidence 3568999999999999999999987 8899998 888877665 5689999999988 4554 99999 45588765
No 69
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.55 E-value=8.6e-08 Score=80.55 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=58.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEeccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP---NADAVFMKVI 259 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---~aD~~~l~~v 259 (266)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.+++ .+||+++.+|.++++| .+|+++...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3557999999999999999999999999999998 666666653 5689999999999776 3999887553
No 70
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.55 E-value=6.3e-08 Score=79.11 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEeccccccCC
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP--NADAVFMKVIVLIQD 264 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd~~ 264 (266)
..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|+|++..+||.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 579999999999999999998 558999998 777777665 6789999999988 555 399999999999885
No 71
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.53 E-value=2.1e-07 Score=74.81 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEec-cccccCC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP--NADAVFMK-VIVLIQD 264 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p--~aD~~~l~-~vLHd~~ 264 (266)
....+|||||||+|.++..+++. +.+++++|. |.+++.+++ ..+++++.+|+.+ ++| .+|++++. .++|..+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46679999999999999999988 568999998 777776654 5679999999998 565 39999998 7888653
No 72
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.53 E-value=1.2e-07 Score=81.90 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=60.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-C-CC--CccEEEeccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-A-VP--NADAVFMKVI 259 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~-~p--~aD~~~l~~v 259 (266)
+..+|||||||+|.++..+++. ..+++++|+ |.+++.+++ .++++++.+|+.+ + ++ .+|+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999998 668999998 777776654 2789999999988 3 34 3999999999
Q ss_pred cccCCC
Q 042491 260 VLIQDL 265 (266)
Q Consensus 260 LHd~~~ 265 (266)
||.+++
T Consensus 146 l~~~~~ 151 (285)
T 4htf_A 146 LEWVAD 151 (285)
T ss_dssp GGGCSC
T ss_pred hhcccC
Confidence 998865
No 73
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.51 E-value=8.1e-08 Score=78.44 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=58.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC-CCC-ccEEEecccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA-VPN-ADAVFMKVIV 260 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-aD~~~l~~vL 260 (266)
....+|+|+|||.|-++..+....|+.+++..|. +.+++.+++ ..++++ .|.... .|+ ||++++.++|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4678999999999999999999999999999998 777777664 225665 777664 444 9999999999
Q ss_pred cc
Q 042491 261 LI 262 (266)
Q Consensus 261 Hd 262 (266)
|.
T Consensus 126 Hl 127 (200)
T 3fzg_A 126 PV 127 (200)
T ss_dssp HH
T ss_pred Hh
Confidence 95
No 74
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.50 E-value=4.7e-07 Score=84.38 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=65.1
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCCC
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVPN 250 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p~ 250 (266)
...++..++ .....+|||||||+|.++..+++ .|..+++++|+.++++.+++ .+||+++.+|+.+ ++|+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 445566555 44568999999999999998877 68889999999777665543 3789999999998 6775
Q ss_pred -ccEEEeccccccC
Q 042491 251 -ADAVFMKVIVLIQ 263 (266)
Q Consensus 251 -aD~~~l~~vLHd~ 263 (266)
+|+|++..++|.+
T Consensus 224 ~fD~Ivs~~~~~~~ 237 (480)
T 3b3j_A 224 QVDIIISEPMGYML 237 (480)
T ss_dssp CEEEEECCCCHHHH
T ss_pred CeEEEEEeCchHhc
Confidence 9999998776654
No 75
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=9e-08 Score=80.60 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC-CCC-------CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN-AVP-------NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~-~~p-------~aD~~~l~ 257 (266)
.....+|||||||+|.++..+++..+ +++++|. |.+++.+++ ..+++++.+|+.+ +.+ .+|++++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34567999999999999999999998 7889998 777776653 4589999999998 332 28999999
Q ss_pred cccccCC
Q 042491 258 VIVLIQD 264 (266)
Q Consensus 258 ~vLHd~~ 264 (266)
.++|..+
T Consensus 132 ~~~~~~~ 138 (245)
T 3ggd_A 132 TGFHHIP 138 (245)
T ss_dssp SSSTTSC
T ss_pred chhhcCC
Confidence 9999876
No 76
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.50 E-value=2.3e-07 Score=77.07 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCC-CCC--CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLN-AVP--NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~-~~p--~aD~~~ 255 (266)
....+|||||||+|.++..+++. ..+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35689999999999999999998 669999998 666665543 2368999999988 555 399999
Q ss_pred eccccccCCC
Q 042491 256 MKVIVLIQDL 265 (266)
Q Consensus 256 l~~vLHd~~~ 265 (266)
+..++|.+.+
T Consensus 107 ~~~~l~~~~~ 116 (235)
T 3sm3_A 107 MQAFLTSVPD 116 (235)
T ss_dssp EESCGGGCCC
T ss_pred EcchhhcCCC
Confidence 9999998864
No 77
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.49 E-value=2.1e-07 Score=80.27 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-cc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-AD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD 252 (266)
.+++.++ .....+|||||||+|.++..+++. +.+++++|. +.+++.+++ .-+++++.+|+.+ +.++ +|
T Consensus 111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 186 (286)
T 3m70_A 111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186 (286)
T ss_dssp HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 3444444 336689999999999999999998 568999998 777766553 2389999999998 3444 99
Q ss_pred EEEeccccccCC
Q 042491 253 AVFMKVIVLIQD 264 (266)
Q Consensus 253 ~~~l~~vLHd~~ 264 (266)
+|++..++|..+
T Consensus 187 ~i~~~~~~~~~~ 198 (286)
T 3m70_A 187 FIVSTVVFMFLN 198 (286)
T ss_dssp EEEECSSGGGSC
T ss_pred EEEEccchhhCC
Confidence 999999999765
No 78
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.48 E-value=1.8e-07 Score=81.29 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=55.9
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCCC-c---cEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVPN-A---DAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-a---D~~~l~ 257 (266)
...+|||||||+|.++..+++. |+.+++++|+ +.+++.+++ .+||+++.+|+++++++ + |+|+..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence 4469999999999999999999 9999999998 777776653 35799999999997654 8 999985
No 79
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.48 E-value=1.2e-07 Score=79.48 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=57.9
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEeccccccC
Q 042491 194 RSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP--NADAVFMKVIVLIQ 263 (266)
Q Consensus 194 ~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~aD~~~l~~vLHd~ 263 (266)
.+|||||||+|.++..+++ +..+++++|+ |.+++.+++ ..+|+++.+|+.+..| .+|+|++..++|.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 6778999998 777776553 2569999999999434 49999999999987
Q ss_pred C
Q 042491 264 D 264 (266)
Q Consensus 264 ~ 264 (266)
+
T Consensus 146 ~ 146 (235)
T 3lcc_A 146 E 146 (235)
T ss_dssp C
T ss_pred C
Confidence 6
No 80
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.48 E-value=1.1e-06 Score=74.21 Aligned_cols=71 Identities=28% Similarity=0.352 Sum_probs=56.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEec-cccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-ADAVFMK-VIVL 261 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD~~~l~-~vLH 261 (266)
....+|||||||+|.++..+++. +.+++++|+ |.+++.+++ ..+++++.+|+.+ +.++ +|++++. ..+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 45679999999999999999987 568999998 777776653 3479999999988 4554 9999975 4444
Q ss_pred cC
Q 042491 262 IQ 263 (266)
Q Consensus 262 d~ 263 (266)
.+
T Consensus 118 ~~ 119 (252)
T 1wzn_A 118 YF 119 (252)
T ss_dssp GS
T ss_pred cC
Confidence 43
No 81
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.47 E-value=2e-07 Score=78.54 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=58.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEeccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP---NADAVFMKVI 259 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---~aD~~~l~~v 259 (266)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.+++ .+||+++.||.++.++ .+|++++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3558999999999999999999999999999998 666666653 5789999999999644 3999986654
No 82
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.47 E-value=4.5e-07 Score=74.72 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=65.0
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC---C
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP---N 250 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~ 250 (266)
++..+. .....+|||||||+|.++..+++.. |+.+++++|. |.+++.+++ .++++++.+|+..+++ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 344444 4566899999999999999999998 7789999998 777766653 3579999999977654 4
Q ss_pred ccEEEeccccccCC
Q 042491 251 ADAVFMKVIVLIQD 264 (266)
Q Consensus 251 aD~~~l~~vLHd~~ 264 (266)
+|++++..++|...
T Consensus 147 fD~v~~~~~~~~~~ 160 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP 160 (215)
T ss_dssp EEEEEESSBBSSCC
T ss_pred eeEEEECCchHHHH
Confidence 99999999998754
No 83
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.46 E-value=5.1e-07 Score=74.12 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=64.0
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC---Cc
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP---NA 251 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~a 251 (266)
++..++ .....+|||||||+|.++..+++. ..+++.+|. |.+++.+++ .++++++.+|+.+..+ .+
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344455 566789999999999999999998 578999998 777766553 3579999999988533 49
Q ss_pred cEEEeccccccCCC
Q 042491 252 DAVFMKVIVLIQDL 265 (266)
Q Consensus 252 D~~~l~~vLHd~~~ 265 (266)
|++++...+|...+
T Consensus 145 D~i~~~~~~~~~~~ 158 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT 158 (210)
T ss_dssp EEEEESSBCSSCCT
T ss_pred cEEEEccchhhhhH
Confidence 99999999987653
No 84
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.45 E-value=3.5e-07 Score=82.60 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------C--CCeEEEEccCCCCCC--
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------Y--EGVSHVGGDMLNAVP-- 249 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~--~ri~~~~gd~~~~~p-- 249 (266)
+++.++ .....+|+|+|||+|.++..+++.+|..+++++|. +.+++.+++ . .+++++.+|++++++
T Consensus 214 ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 214 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 455555 33448999999999999999999999999999998 777776654 1 258889999999876
Q ss_pred CccEEEecccccc
Q 042491 250 NADAVFMKVIVLI 262 (266)
Q Consensus 250 ~aD~~~l~~vLHd 262 (266)
.+|+|++.-.+|.
T Consensus 292 ~fD~Ii~nppfh~ 304 (375)
T 4dcm_A 292 RFNAVLCNPPFHQ 304 (375)
T ss_dssp CEEEEEECCCC--
T ss_pred CeeEEEECCCccc
Confidence 3999999877774
No 85
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.45 E-value=2.1e-07 Score=78.98 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=57.8
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC--C-ccEEEeccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP--N-ADAVFMKVI 259 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~-aD~~~l~~v 259 (266)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.+++ .+||++..+|.++.++ + +|++++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3558999999999999999999999999999998 666666553 5789999999999654 3 999987654
No 86
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.44 E-value=4.1e-07 Score=75.18 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=61.7
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC---CCC--CccE
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN---AVP--NADA 253 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~---~~p--~aD~ 253 (266)
..+++.++ ....+|||||||+|.++..+++. + .+++++|. +.+++.++.. -.+++.+|+.+ +++ .+|+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCE
Confidence 34455443 35689999999999999999998 5 89999998 7777766542 24788999875 344 3999
Q ss_pred EEeccccccCCC
Q 042491 254 VFMKVIVLIQDL 265 (266)
Q Consensus 254 ~~l~~vLHd~~~ 265 (266)
+++..++|.+++
T Consensus 97 v~~~~~l~~~~~ 108 (230)
T 3cc8_A 97 VIFGDVLEHLFD 108 (230)
T ss_dssp EEEESCGGGSSC
T ss_pred EEECChhhhcCC
Confidence 999999998764
No 87
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.43 E-value=2e-07 Score=80.72 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCceEEEecCCchH----HHHHHHHHCC----CCeEEEeec-HHHHhhCCCC----------------------------
Q 042491 192 GIRSLVDVGGGTGE----ELAEIVEFYP----HIKGVNFDL-PHVVATAPVY---------------------------- 234 (266)
Q Consensus 192 ~~~~vvDvGgG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~~---------------------------- 234 (266)
+..+|+|+|||+|. +++.|++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34799999999998 6666777756 468999998 7777655420
Q ss_pred ---------CCeEEEEccCCC-CCC---CccEEEeccccccCCC
Q 042491 235 ---------EGVSHVGGDMLN-AVP---NADAVFMKVIVLIQDL 265 (266)
Q Consensus 235 ---------~ri~~~~gd~~~-~~p---~aD~~~l~~vLHd~~~ 265 (266)
++|+|..+|+.+ ++| .+|+|+++++||++++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~ 228 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK 228 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCH
Confidence 379999999999 465 4999999999998863
No 88
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.43 E-value=4.7e-07 Score=74.83 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CC--CccEEEeccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VP--NADAVFMKVI 259 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p--~aD~~~l~~v 259 (266)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++|+++.+|+.+ + ++ .+|++++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999998 777776654 3689999999987 3 54 3899988643
No 89
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.43 E-value=1.3e-07 Score=79.49 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEeccccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVP--NADAVFMKVIVL 261 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p--~aD~~~l~~vLH 261 (266)
...+|||||||+|.++..+++.. ..+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .+|+|++..+||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999999987 568999998 777776653 2368999999877 444 399999999999
Q ss_pred cCCC
Q 042491 262 IQDL 265 (266)
Q Consensus 262 d~~~ 265 (266)
.+++
T Consensus 158 ~~~~ 161 (241)
T 2ex4_A 158 HLTD 161 (241)
T ss_dssp GSCH
T ss_pred hCCH
Confidence 8764
No 90
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.43 E-value=3.1e-07 Score=79.16 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC----C---CCeEEEEccCCCCCCC-
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV----Y---EGVSHVGGDMLNAVPN- 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~----~---~ri~~~~gd~~~~~p~- 250 (266)
.++..++ .....+|||+|||+|.++..+++. +|..+++++|. |.+++.+++ . ++++++.+|+.+++|+
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444455 566789999999999999999998 89999999998 777765543 2 5899999999987663
Q ss_pred -ccEEEe
Q 042491 251 -ADAVFM 256 (266)
Q Consensus 251 -aD~~~l 256 (266)
+|+|++
T Consensus 179 ~fD~Vi~ 185 (275)
T 1yb2_A 179 MYDAVIA 185 (275)
T ss_dssp CEEEEEE
T ss_pred CccEEEE
Confidence 999997
No 91
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.43 E-value=4.7e-07 Score=76.66 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=61.9
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCCC-
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVPN- 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~- 250 (266)
.++..++ .....+|||+|||+|.++..+++. .|..+++++|. |+.++.+++ .+|++++.+|+.+.+|.
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 4455555 567789999999999999999999 89999999998 777776654 46799999999987763
Q ss_pred -ccEEEe
Q 042491 251 -ADAVFM 256 (266)
Q Consensus 251 -aD~~~l 256 (266)
+|++++
T Consensus 162 ~~D~v~~ 168 (255)
T 3mb5_A 162 NVDHVIL 168 (255)
T ss_dssp SEEEEEE
T ss_pred CcCEEEE
Confidence 999987
No 92
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.42 E-value=4.1e-07 Score=76.08 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEecc-cccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-ADAVFMKV-IVLI 262 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD~~~l~~-vLHd 262 (266)
...+|||||||+|.++..+++. ..+++++|. |.+++.+++ ..+++++.+|+.+ +.++ +|+|++.. +||.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5579999999999999999998 458999998 777776654 2389999999988 4554 99999998 9998
Q ss_pred C
Q 042491 263 Q 263 (266)
Q Consensus 263 ~ 263 (266)
+
T Consensus 115 ~ 115 (246)
T 1y8c_A 115 I 115 (246)
T ss_dssp C
T ss_pred c
Confidence 7
No 93
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.42 E-value=1.4e-07 Score=77.22 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=55.0
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEecc
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP--NADAVFMKV 258 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~aD~~~l~~ 258 (266)
..+|||||||+|..+..+++.+|+.+++++|. |.+++.++. .++++++.+|+.+..| .+|++++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence 57999999999999999999999999999998 777766553 2459999999988443 499998653
No 94
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.41 E-value=4.1e-07 Score=74.46 Aligned_cols=71 Identities=17% Similarity=0.053 Sum_probs=58.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC--CccEEEecccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP--NADAVFMKVIVLI 262 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd 262 (266)
....+|||||||+|.++..+++..+. +++++|. |.+++.+++ .++++++.+|+.+ +++ .+|+|++..++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45679999999999999999999776 8999998 667665543 3689999999988 565 3999999888754
No 95
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.41 E-value=1e-07 Score=78.05 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC-----
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP----- 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p----- 249 (266)
.+++.++. .....+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.++++
T Consensus 20 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 20 EAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34444431 25678999999999999999999999999999998 788877765 1178999999988532
Q ss_pred --CccEEEec
Q 042491 250 --NADAVFMK 257 (266)
Q Consensus 250 --~aD~~~l~ 257 (266)
.+|++++.
T Consensus 99 ~~~fD~i~~n 108 (215)
T 4dzr_A 99 GRPWHAIVSN 108 (215)
T ss_dssp TCCBSEEEEC
T ss_pred cCcccEEEEC
Confidence 49999984
No 96
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.41 E-value=5.1e-07 Score=74.46 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCCC-----CC-C-cc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLNA-----VP-N-AD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-----~p-~-aD 252 (266)
.++..+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++..+++++.+|+.+. .+ + +|
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3455444 345589999999999999999998 568999998 77787776667888998887652 22 3 99
Q ss_pred EEEeccccccCCC
Q 042491 253 AVFMKVIVLIQDL 265 (266)
Q Consensus 253 ~~~l~~vLHd~~~ 265 (266)
+|++..++| +.+
T Consensus 119 ~v~~~~~l~-~~~ 130 (227)
T 3e8s_A 119 LICANFALL-HQD 130 (227)
T ss_dssp EEEEESCCC-SSC
T ss_pred EEEECchhh-hhh
Confidence 999999999 554
No 97
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.41 E-value=2.9e-07 Score=82.01 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC-CccE
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP-NADA 253 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~aD~ 253 (266)
.+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .-+++++.+|+++..+ .+|+
T Consensus 187 ~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 187 LLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 4455554 23456899999999999999999999999999998 666766553 3347889999988545 4999
Q ss_pred EEecccccc
Q 042491 254 VFMKVIVLI 262 (266)
Q Consensus 254 ~~l~~vLHd 262 (266)
|++...+|.
T Consensus 265 Iv~~~~~~~ 273 (343)
T 2pjd_A 265 IISNPPFHD 273 (343)
T ss_dssp EEECCCCCS
T ss_pred EEECCCccc
Confidence 999998885
No 98
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.41 E-value=7.9e-07 Score=76.51 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP--NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~aD~~~l~ 257 (266)
...+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++.+|++++++ .+|+|++.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN 183 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence 457999999999999999999999999999998 777776653 3589999999998763 49999987
No 99
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.40 E-value=2.5e-07 Score=76.07 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC-CCCC-ccEEEeccccccCC
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN-AVPN-ADAVFMKVIVLIQD 264 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~-~~p~-aD~~~l~~vLHd~~ 264 (266)
+....+|||||||+|.++..+++. ..+++++|. +.+++.+++.-+++++.+|+.+ +.++ +|+|++..+||.++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 116 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVP 116 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcC
Confidence 345679999999999999999988 568999998 7777766653378889999887 4333 99999999999875
No 100
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=3.5e-07 Score=72.86 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC--Ccc
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP--NAD 252 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~aD 252 (266)
++..++ .....+|||||||+|.++..+++ +..+++++|. |.+++.+++ .++++++.+|+.+++| .+|
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 45667999999999999999999 8889999998 777766654 2689999999988665 499
Q ss_pred EEEeccc
Q 042491 253 AVFMKVI 259 (266)
Q Consensus 253 ~~~l~~v 259 (266)
++++..+
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998876
No 101
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.39 E-value=5.5e-07 Score=75.29 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEecc-cccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-ADAVFMKV-IVLI 262 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD~~~l~~-vLHd 262 (266)
...+|||||||+|.++..+++. .+++++|. |.+++.+++ ..+++++.+|+.+ +.++ +|++++.. ++|.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999999887 68999998 777776654 3689999999988 4554 99999986 8887
Q ss_pred C
Q 042491 263 Q 263 (266)
Q Consensus 263 ~ 263 (266)
.
T Consensus 110 ~ 110 (243)
T 3d2l_A 110 L 110 (243)
T ss_dssp C
T ss_pred c
Confidence 6
No 102
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.39 E-value=5.4e-07 Score=73.94 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCC-eEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEeccccccCCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHI-KGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd~~~ 265 (266)
...+|||||||+|.++..+ .. +++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|++++..++|..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 5679999999999999888 45 8999998 677776654 4789999999988 565 3999999999998764
No 103
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.39 E-value=3.9e-07 Score=79.22 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=61.8
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----C----CCeEEEEccCCC-C
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----Y----EGVSHVGGDMLN-A 247 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~----~ri~~~~gd~~~-~ 247 (266)
...++..++ . ...+|||||||+|.++..+++. ..+++++|+ |.+++.+++ . .+|+++.+|+.+ +
T Consensus 72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 344555554 2 3349999999999999999998 568999998 777777664 1 789999999998 5
Q ss_pred CCC-ccEEEec-cccccCC
Q 042491 248 VPN-ADAVFMK-VIVLIQD 264 (266)
Q Consensus 248 ~p~-aD~~~l~-~vLHd~~ 264 (266)
.++ +|+|++. .++|..+
T Consensus 147 ~~~~fD~v~~~~~~~~~~~ 165 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELD 165 (299)
T ss_dssp CSCCEEEEEECHHHHTTSC
T ss_pred cCCCcCEEEECCcccccCC
Confidence 554 9988865 6666554
No 104
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.39 E-value=1.7e-07 Score=80.95 Aligned_cols=73 Identities=19% Similarity=0.105 Sum_probs=59.5
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCC-C---CC--CccE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLN-A---VP--NADA 253 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~-~---~p--~aD~ 253 (266)
.+..+|||||||+|.++..+++..+ +++++|+ |.+++.+++ ..++.+..+|+.+ + ++ .+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 3567999999999999999999854 8999998 667766532 3678999999888 4 44 3999
Q ss_pred EEec-cccccCCC
Q 042491 254 VFMK-VIVLIQDL 265 (266)
Q Consensus 254 ~~l~-~vLHd~~~ 265 (266)
|++. +++|.+.+
T Consensus 134 V~~~g~~l~~~~~ 146 (293)
T 3thr_A 134 VICLGNSFAHLPD 146 (293)
T ss_dssp EEECTTCGGGSCC
T ss_pred EEEcChHHhhcCc
Confidence 9998 89998765
No 105
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.38 E-value=7.4e-07 Score=72.93 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCCC-ccEEEecccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVPN-ADAVFMKVIVLI 262 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-aD~~~l~~vLHd 262 (266)
....+|||||||+|.++..+++ .|..+++++|. +.+++.+++ ..+++++.+|+.+..++ +|++++...+|.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3567999999999999999776 57789999998 777776653 23499999999886554 999999877764
No 106
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.37 E-value=3.3e-07 Score=78.27 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=57.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------------------CCCeEEEEccCCC-
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------------------YEGVSHVGGDMLN- 246 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~~~- 246 (266)
...+|||||||+|..+..|++. ..+++++|+ |.+++.+++ ..+|+++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5579999999999999999987 568999998 777765531 2589999999998
Q ss_pred CCC---CccEEEeccccccCC
Q 042491 247 AVP---NADAVFMKVIVLIQD 264 (266)
Q Consensus 247 ~~p---~aD~~~l~~vLHd~~ 264 (266)
+.+ .+|+|+.+.+||..+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~ 166 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN 166 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC
T ss_pred CcccCCCEEEEEEhhhhhhCC
Confidence 432 499999988887653
No 107
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.37 E-value=1.1e-06 Score=70.49 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CC--CeEEEEccCCCCCC--
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YE--GVSHVGGDMLNAVP-- 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~--ri~~~~gd~~~~~p-- 249 (266)
.+++.+. .....+|||||||+|.++..+++. ..+++++|. |.+++.++. .+ |++++.+|+.++.+
T Consensus 43 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3455555 456689999999999999999998 779999998 677665553 22 59999999998654
Q ss_pred CccEEEecccccc
Q 042491 250 NADAVFMKVIVLI 262 (266)
Q Consensus 250 ~aD~~~l~~vLHd 262 (266)
.+|++++...+|.
T Consensus 119 ~~D~v~~~~~~~~ 131 (194)
T 1dus_A 119 KYNKIITNPPIRA 131 (194)
T ss_dssp CEEEEEECCCSTT
T ss_pred CceEEEECCCccc
Confidence 3999999887763
No 108
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.36 E-value=1e-06 Score=78.66 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=62.9
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCCC-c
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVPN-A 251 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p~-a 251 (266)
.++..+. .....+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ ++|+ +
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3455554 345679999999999999998886 6679999999666655443 3789999999988 5665 9
Q ss_pred cEEEeccccccCC
Q 042491 252 DAVFMKVIVLIQD 264 (266)
Q Consensus 252 D~~~l~~vLHd~~ 264 (266)
|+|+...++|.+.
T Consensus 118 D~Ivs~~~~~~~~ 130 (348)
T 2y1w_A 118 DIIISEPMGYMLF 130 (348)
T ss_dssp EEEEECCCBTTBT
T ss_pred eEEEEeCchhcCC
Confidence 9999988877653
No 109
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.36 E-value=1.4e-06 Score=71.80 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---CCC
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---VPN 250 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~ 250 (266)
++..++ .....+|||||||+|.++..+++. ..+++++|. |++++.+++ .++|+++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344444 556689999999999999999998 779999998 777776653 23899999999883 346
Q ss_pred ccEEEeccc
Q 042491 251 ADAVFMKVI 259 (266)
Q Consensus 251 aD~~~l~~v 259 (266)
+|++++...
T Consensus 123 ~D~v~~~~~ 131 (204)
T 3njr_A 123 PEAVFIGGG 131 (204)
T ss_dssp CSEEEECSC
T ss_pred CCEEEECCc
Confidence 999997653
No 110
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.35 E-value=5.5e-07 Score=87.95 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=62.2
Q ss_pred CCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC------------CCCeEEEEccCCC-CCC--CccEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV------------YEGVSHVGGDMLN-AVP--NADAV 254 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------------~~ri~~~~gd~~~-~~p--~aD~~ 254 (266)
+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+|+++.+|+.+ +.+ .||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 56899999999999999999998 5679999998 666665532 3579999999988 444 49999
Q ss_pred EeccccccCCC
Q 042491 255 FMKVIVLIQDL 265 (266)
Q Consensus 255 ~l~~vLHd~~~ 265 (266)
++..+||.+++
T Consensus 801 V~~eVLeHL~d 811 (950)
T 3htx_A 801 TCLEVIEHMEE 811 (950)
T ss_dssp EEESCGGGSCH
T ss_pred EEeCchhhCCh
Confidence 99999998763
No 111
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.34 E-value=1.4e-06 Score=72.52 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCCCCC---Ccc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLNAVP---NAD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p---~aD 252 (266)
.++..+. .....+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+.+| .+|
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444444 5566899999999999999999987 68999998 777766553 2389999999988443 399
Q ss_pred EEEeccccccCC
Q 042491 253 AVFMKVIVLIQD 264 (266)
Q Consensus 253 ~~~l~~vLHd~~ 264 (266)
++++..++|...
T Consensus 137 ~v~~~~~~~~~~ 148 (231)
T 1vbf_A 137 RVVVWATAPTLL 148 (231)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCcHHHHH
Confidence 999999998764
No 112
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.33 E-value=1.9e-06 Score=75.35 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---------
Q 042491 164 NNSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--------- 233 (266)
Q Consensus 164 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------- 233 (266)
.+.|+.++... ....+++.+........+|||||||+|.++..+++. +..+++++|+ +.+++.+++
T Consensus 9 lr~~~~~~k~~---l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 9 LRNFNNWMKSV---LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhhccHHHHHH---HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 34566666442 233344443322346689999999999999999884 6779999998 666665543
Q ss_pred ----CCCeEEEEccCCC-C----C--C--CccEEEeccccccC
Q 042491 234 ----YEGVSHVGGDMLN-A----V--P--NADAVFMKVIVLIQ 263 (266)
Q Consensus 234 ----~~ri~~~~gd~~~-~----~--p--~aD~~~l~~vLHd~ 263 (266)
..+++++.+|+.+ + + + .+|+|++..+||..
T Consensus 85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~ 127 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYS 127 (313)
T ss_dssp CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGG
T ss_pred cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhc
Confidence 2379999999987 3 3 3 49999999999864
No 113
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.32 E-value=1.8e-06 Score=71.25 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=51.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhh----CCC------CCCeEEEEccCCC-CCC-CccEEE
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVAT----APV------YEGVSHVGGDMLN-AVP-NADAVF 255 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~----a~~------~~ri~~~~gd~~~-~~p-~aD~~~ 255 (266)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++ +.|.+.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 44668999999999999999999999999999998 554442 221 4589999999998 444 236665
No 114
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.32 E-value=1.5e-06 Score=74.95 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CC-C--CccEEEecc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AV-P--NADAVFMKV 258 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~-p--~aD~~~l~~ 258 (266)
....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .+|+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45689999999999999998776 5669999998 777766553 2579999999998 55 3 399999999
Q ss_pred cccc
Q 042491 259 IVLI 262 (266)
Q Consensus 259 vLHd 262 (266)
++|.
T Consensus 142 ~l~~ 145 (298)
T 1ri5_A 142 SFHY 145 (298)
T ss_dssp CGGG
T ss_pred hhhh
Confidence 9986
No 115
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.32 E-value=5.1e-07 Score=75.77 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=56.7
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC-----CccEEEecc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP-----NADAVFMKV 258 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-----~aD~~~l~~ 258 (266)
+..+|||||||+|..+..+++.+|..+++.+|+ |++++.+++ .++|+++.+|+.+.+| .+|+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 567999999999999999999999999999998 777776654 3689999999988433 399998754
No 116
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.32 E-value=6.7e-07 Score=72.96 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=57.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCCCCC-CccEEEeccccccCC
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLNAVP-NADAVFMKVIVLIQD 264 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p-~aD~~~l~~vLHd~~ 264 (266)
....+|||+|||+|.++..+++. +..+++++|. |.+++.++. ..+++++.+|+.+ +| .+|++++.-.+|.+.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVV 124 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC----
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhcc
Confidence 35579999999999999999987 6568999998 778776664 3389999999988 45 499999998888765
No 117
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.31 E-value=7.3e-07 Score=75.56 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=56.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccC----CCCCC-----CccEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDM----LNAVP-----NADAV 254 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~----~~~~p-----~aD~~ 254 (266)
...+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+||+++.+|. +++++ .+|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999999999999998 777776653 45799999994 33554 39999
Q ss_pred Eeccccc
Q 042491 255 FMKVIVL 261 (266)
Q Consensus 255 ~l~~vLH 261 (266)
++.-..|
T Consensus 145 ~~npp~~ 151 (254)
T 2h00_A 145 MCNPPFF 151 (254)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9874444
No 118
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.31 E-value=6.8e-07 Score=73.05 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=58.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCC-C-ccEEEeccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVP-N-ADAVFMKVIVL 261 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p-~-aD~~~l~~vLH 261 (266)
....+|||||||+|.....++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ ++| + +|++++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 35579999999999985555544 5679999998 777776553 4689999999988 565 3 99999999999
Q ss_pred cCC
Q 042491 262 IQD 264 (266)
Q Consensus 262 d~~ 264 (266)
.++
T Consensus 101 ~~~ 103 (209)
T 2p8j_A 101 HMR 103 (209)
T ss_dssp GSC
T ss_pred hCC
Confidence 873
No 119
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.31 E-value=1.4e-06 Score=72.78 Aligned_cols=66 Identities=11% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhh----CCCCCCeEEEEccCCCC-----CC-CccEEE
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVAT----APVYEGVSHVGGDMLNA-----VP-NADAVF 255 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~----a~~~~ri~~~~gd~~~~-----~p-~aD~~~ 255 (266)
+....+|||||||+|.++..+++.+|..+++++|. |.+++. ++..+++.++.+|+.++ ++ .+|+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 45668999999999999999999999889999998 666643 33357899999999862 33 489988
No 120
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.30 E-value=7.9e-07 Score=73.72 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=54.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CC--CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VP--NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p--~aD~~~l~ 257 (266)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++|+++.+|+.+ + +| .+|.+++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 457899999999999999999999999999998 666665543 3679999999887 3 54 38988764
No 121
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.29 E-value=8.2e-07 Score=74.06 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCC----CC--CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNA----VP--NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p--~aD~~~l~ 257 (266)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++|+++.+|..+. +| .+|.+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 457999999999999999999999999999998 666665442 45799999997662 55 38888875
No 122
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.29 E-value=1.5e-06 Score=77.68 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCC-C-ccEEEecccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVP-N-ADAVFMKVIV 260 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p-~-aD~~~l~~vL 260 (266)
...+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ ++| + +|+|+...+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 4579999999999999999988 7779999999767666553 5679999999998 677 3 9999986543
No 123
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.28 E-value=7e-07 Score=78.68 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=56.5
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC---CCC--CccEEEecccc
Q 042491 194 RSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN---AVP--NADAVFMKVIV 260 (266)
Q Consensus 194 ~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~---~~p--~aD~~~l~~vL 260 (266)
.+|||||||.|.+++.+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++--..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999999999999998 888887653 5799999999876 344 39999985433
No 124
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.28 E-value=1.2e-06 Score=72.46 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=54.8
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEeccccccCCC
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN-AVP--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd~~~ 265 (266)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++ .+|++++..+||..++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence 679999999999999998765 88898 7777666544 79999999887 555 3999999999998754
No 125
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.27 E-value=3.1e-06 Score=68.79 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCC--CCeEEEeecHHHHhhCCCCCCeEEEEccCCC-C-----------
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYP--HIKGVNFDLPHVVATAPVYEGVSHVGGDMLN-A----------- 247 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P--~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~-~----------- 247 (266)
+.+.+. .+....+|||||||+|.++..+++++| +.+++++|+.++ ...++++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccccc
Confidence 444554 134567999999999999999999998 689999998663 124679999999987 3
Q ss_pred --------------CC--CccEEEecccccc
Q 042491 248 --------------VP--NADAVFMKVIVLI 262 (266)
Q Consensus 248 --------------~p--~aD~~~l~~vLHd 262 (266)
++ .+|++++...+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~ 118 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPC 118 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCC
Confidence 35 4899998766553
No 126
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.26 E-value=1.1e-06 Score=75.51 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=56.8
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC----CCC-C
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN----AVP-N 250 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~----~~p-~ 250 (266)
..++..++ .....+|||||||+|.++..++++ ..+++++|. |.+++.+++ ...+.....++.. ..+ .
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 34555555 566789999999999999999987 458999998 778877654 1223322222221 123 4
Q ss_pred ccEEEeccccccCC
Q 042491 251 ADAVFMKVIVLIQD 264 (266)
Q Consensus 251 aD~~~l~~vLHd~~ 264 (266)
+|+|++..++|.|.
T Consensus 111 fD~Vv~~~~l~~~~ 124 (261)
T 3iv6_A 111 FDFVLNDRLINRFT 124 (261)
T ss_dssp CSEEEEESCGGGSC
T ss_pred ccEEEEhhhhHhCC
Confidence 99999999999875
No 127
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.25 E-value=1.4e-06 Score=76.07 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCCCccEEEeccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVPNADAVFMKVI 259 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p~aD~~~l~~v 259 (266)
.....+|||||||+|.+...++.+.|+.+++++|+ |++++.|++ .+||+++.||..+ +-..||++++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC
Confidence 56789999999999988777777888999999998 888887764 3799999999987 3224999997654
No 128
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.24 E-value=3.1e-06 Score=75.28 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=58.3
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCC-C-c
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVP-N-A 251 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p-~-a 251 (266)
+..... .....+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ ++| + +
T Consensus 56 i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 56 IYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 344444 445689999999999999999887 5568999999667766553 3799999999988 566 3 9
Q ss_pred cEEEecc
Q 042491 252 DAVFMKV 258 (266)
Q Consensus 252 D~~~l~~ 258 (266)
|+++...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999766
No 129
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.24 E-value=8.9e-07 Score=75.40 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=56.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CC----C-CccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AV----P-NADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~----p-~aD~~~l~ 257 (266)
....+|||||||+|..+..++..+|+.+++++|. +..++.+++ ..+|+++.+|+.+ +. + .||+|+.+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999997 666666553 3469999999876 32 2 49999986
Q ss_pred cc
Q 042491 258 VI 259 (266)
Q Consensus 258 ~v 259 (266)
.+
T Consensus 159 a~ 160 (249)
T 3g89_A 159 AV 160 (249)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 130
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.23 E-value=1.5e-06 Score=75.41 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCceEEEecCCchHHH----HHHHHHCCCCeE--EEeec-HHHHhhCCC-------CCCeEE--EEccCCC-C------C
Q 042491 192 GIRSLVDVGGGTGEEL----AEIVEFYPHIKG--VNFDL-PHVVATAPV-------YEGVSH--VGGDMLN-A------V 248 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~----~~l~~~~P~l~~--~~~Dl-p~v~~~a~~-------~~ri~~--~~gd~~~-~------~ 248 (266)
...+|||||||+|.++ ..++.++|+.++ +++|. +++++.+++ .+++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 4569999999999754 456677898865 99997 677765442 134544 4454432 1 2
Q ss_pred C--CccEEEeccccccCCC
Q 042491 249 P--NADAVFMKVIVLIQDL 265 (266)
Q Consensus 249 p--~aD~~~l~~vLHd~~~ 265 (266)
+ .||+|+++++||.++|
T Consensus 132 ~~~~fD~V~~~~~l~~~~d 150 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKD 150 (292)
T ss_dssp CCCCEEEEEEESCGGGCSC
T ss_pred CCCceeEEEEeeeeeecCC
Confidence 3 3999999999999876
No 131
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.23 E-value=2.6e-06 Score=74.96 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=64.1
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC---
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP--- 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--- 249 (266)
.++..++ .....+|||||||+|.++..+++..+ +.+++++|+ |+.++.+++ .++++++.+|+.+..+
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444444 55668999999999999999999988 488999998 777766553 3569999999988432
Q ss_pred CccEEEeccccccC
Q 042491 250 NADAVFMKVIVLIQ 263 (266)
Q Consensus 250 ~aD~~~l~~vLHd~ 263 (266)
.+|+|++...+|..
T Consensus 144 ~fD~Iv~~~~~~~~ 157 (317)
T 1dl5_A 144 PYDVIFVTVGVDEV 157 (317)
T ss_dssp CEEEEEECSBBSCC
T ss_pred CeEEEEEcCCHHHH
Confidence 49999999998865
No 132
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.21 E-value=2.2e-06 Score=73.29 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC--------CC-
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA--------VP- 249 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~--------~p- 249 (266)
.....+|||+|||+|.++..+++++|+.+++++|+ |.+++.+++ .+||+++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34567999999999999999999999999999998 666665442 24799999999874 33
Q ss_pred -CccEEEec
Q 042491 250 -NADAVFMK 257 (266)
Q Consensus 250 -~aD~~~l~ 257 (266)
.+|+|++.
T Consensus 114 ~~fD~Vv~n 122 (260)
T 2ozv_A 114 EHFHHVIMN 122 (260)
T ss_dssp TCEEEEEEC
T ss_pred CCcCEEEEC
Confidence 39999986
No 133
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.21 E-value=1.5e-06 Score=73.61 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCceEEEecCCchHHHHHHHHH--CCCCeEEEeec-HHHHhhCCC---CC-------C----------------------
Q 042491 192 GIRSLVDVGGGTGEELAEIVEF--YPHIKGVNFDL-PHVVATAPV---YE-------G---------------------- 236 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~---~~-------r---------------------- 236 (266)
...+|||+|||+|.++..+++. +|..+++++|+ |.+++.++. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999999 88889999998 777776653 12 2
Q ss_pred ---eE-------------EEEccCCCCC------C--CccEEEecccccc
Q 042491 237 ---VS-------------HVGGDMLNAV------P--NADAVFMKVIVLI 262 (266)
Q Consensus 237 ---i~-------------~~~gd~~~~~------p--~aD~~~l~~vLHd 262 (266)
|+ ++.+|++++. + .+|+|++...++.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~ 180 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 180 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeec
Confidence 77 9999999864 4 4999999766554
No 134
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.21 E-value=1.5e-06 Score=69.59 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=60.9
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCC---CC
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAV---PN 250 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~---p~ 250 (266)
++..++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+++ +.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 334444 5566899999999999999999988 78999998 777766553 268999999987743 35
Q ss_pred ccEEEecccccc
Q 042491 251 ADAVFMKVIVLI 262 (266)
Q Consensus 251 aD~~~l~~vLHd 262 (266)
+|++++...+|+
T Consensus 101 ~D~v~~~~~~~~ 112 (192)
T 1l3i_A 101 IDIAVVGGSGGE 112 (192)
T ss_dssp EEEEEESCCTTC
T ss_pred CCEEEECCchHH
Confidence 999999888765
No 135
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.19 E-value=3.2e-06 Score=67.82 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC--CC-CC-ccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN--AV-PN-ADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~--~~-p~-aD~~~l~ 257 (266)
.....+|||||||+|.++..+++. ..+++++|+ |.+++.+++ .++++++.+|+.. ++ ++ +|++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 446689999999999999999988 789999998 777777664 3789999977655 13 33 9999876
No 136
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.19 E-value=1.4e-06 Score=72.90 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=58.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C--C-CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V--P-NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~--p-~aD~~~l~ 257 (266)
+..+|||||||+|..+..+++.+|+.+++++|. |..++.+++ .++|+++.+|+.+. . + .+|+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 457999999999999999999999999999998 777766653 36899999999873 2 3 39999987
Q ss_pred ccccc
Q 042491 258 VIVLI 262 (266)
Q Consensus 258 ~vLHd 262 (266)
...++
T Consensus 134 ~~~~~ 138 (233)
T 2gpy_A 134 AAKGQ 138 (233)
T ss_dssp GGGSC
T ss_pred CCHHH
Confidence 76653
No 137
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.19 E-value=3.3e-06 Score=71.26 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=61.0
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC-CCC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA-VPN 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~ 250 (266)
.++..++ .....+|||+|||+|.++..+++. .|..+++++|. |.+++.+++ .++++++.+|+.+. +|.
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555565 667789999999999999999999 78899999998 777766553 26899999999884 763
Q ss_pred --ccEEEe
Q 042491 251 --ADAVFM 256 (266)
Q Consensus 251 --aD~~~l 256 (266)
+|+|++
T Consensus 165 ~~~D~v~~ 172 (258)
T 2pwy_A 165 AAYDGVAL 172 (258)
T ss_dssp TCEEEEEE
T ss_pred CCcCEEEE
Confidence 999997
No 138
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.18 E-value=1e-06 Score=74.24 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CC----C-CccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AV----P-NADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~----p-~aD~~~l~ 257 (266)
....+|||||||+|..+..+++..|+.+++++|. +.+++.+++ .++|+++.+|+.+ +. + .+|+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999999999999998 767766553 3469999999876 33 2 39999986
Q ss_pred cc
Q 042491 258 VI 259 (266)
Q Consensus 258 ~v 259 (266)
.+
T Consensus 149 ~~ 150 (240)
T 1xdz_A 149 AV 150 (240)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 139
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.18 E-value=3e-06 Score=73.55 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=58.8
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCCC
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVPN 250 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p~ 250 (266)
..+++.++ .....+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ ++|.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 34555565 55668999999999999999999854 7889998 666665543 2589999999998 6788
Q ss_pred ccEEEec
Q 042491 251 ADAVFMK 257 (266)
Q Consensus 251 aD~~~l~ 257 (266)
+|+++..
T Consensus 94 fD~vv~n 100 (285)
T 1zq9_A 94 FDTCVAN 100 (285)
T ss_dssp CSEEEEE
T ss_pred hcEEEEe
Confidence 9998874
No 140
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.18 E-value=2.5e-06 Score=71.96 Aligned_cols=67 Identities=13% Similarity=0.309 Sum_probs=53.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC------------CCCCeEEEEccCCCC----CC--Cc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP------------VYEGVSHVGGDMLNA----VP--NA 251 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~------------~~~ri~~~~gd~~~~----~p--~a 251 (266)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+|+++.+|+.+. ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3557999999999999999999999999999998 66655332 246899999998862 44 38
Q ss_pred cEEEec
Q 042491 252 DAVFMK 257 (266)
Q Consensus 252 D~~~l~ 257 (266)
|.+++.
T Consensus 125 D~v~~~ 130 (235)
T 3ckk_A 125 TKMFFL 130 (235)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 888763
No 141
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.18 E-value=3.4e-06 Score=76.07 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEecccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVPN-ADAVFMKVIV 260 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p~-aD~~~l~~vL 260 (266)
.....+|||||||+|.++..++++. ..+++++|...+++.+++ .++|+++.+|+.+ ++|+ +|+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4456899999999999999999883 348999998766665543 4789999999988 5665 9999986544
Q ss_pred cc
Q 042491 261 LI 262 (266)
Q Consensus 261 Hd 262 (266)
|.
T Consensus 140 ~~ 141 (376)
T 3r0q_C 140 YF 141 (376)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 142
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.18 E-value=2.6e-06 Score=73.21 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=60.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC--
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP-- 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-- 249 (266)
.++..++ .....+|||+|||+|.++..+++. .|..+++.+|. |..++.+++ .++++++.+|+.+.+|
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4555555 566789999999999999999999 78999999998 777776653 2689999999988765
Q ss_pred CccEEEe
Q 042491 250 NADAVFM 256 (266)
Q Consensus 250 ~aD~~~l 256 (266)
.+|++++
T Consensus 181 ~~D~V~~ 187 (277)
T 1o54_A 181 DVDALFL 187 (277)
T ss_dssp SEEEEEE
T ss_pred ccCEEEE
Confidence 3999987
No 143
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.17 E-value=2.7e-06 Score=75.26 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCC-C-ccEEEecccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVP-N-ADAVFMKVIV 260 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p-~-aD~~~l~~vL 260 (266)
...+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ ++| + +|++++..+.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 4479999999999999988886 5568999999766665543 4789999999988 566 3 9999987543
No 144
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.16 E-value=1.6e-06 Score=72.04 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC---CCC------CccE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN---AVP------NADA 253 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~---~~p------~aD~ 253 (266)
+..+|||||||+|..+..+++..| +.+++.+|+ |.+++.+++ .+||+++.+|+.+ .++ .+|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 567999999999999999999875 789999998 777776654 4689999999754 233 4999
Q ss_pred EEeccccccC
Q 042491 254 VFMKVIVLIQ 263 (266)
Q Consensus 254 ~~l~~vLHd~ 263 (266)
+++....|.+
T Consensus 138 V~~d~~~~~~ 147 (221)
T 3u81_A 138 VFLDHWKDRY 147 (221)
T ss_dssp EEECSCGGGH
T ss_pred EEEcCCcccc
Confidence 9988766654
No 145
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.16 E-value=1.5e-06 Score=75.86 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCCC---C-CccEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNAV---P-NADAV 254 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---p-~aD~~ 254 (266)
....+|||||||+|..++++++..|..+++++|+ |.+++.+++ .+|++++.+|.++.+ + .+|+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3568999999999999999999888889999998 777776543 469999999988743 2 39999
Q ss_pred Eec
Q 042491 255 FMK 257 (266)
Q Consensus 255 ~l~ 257 (266)
++.
T Consensus 162 i~D 164 (294)
T 3adn_A 162 ISD 164 (294)
T ss_dssp EEC
T ss_pred EEC
Confidence 983
No 146
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.16 E-value=7.2e-06 Score=64.41 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeecHHHHhhCCCCCCeEEEEccCCC-C--------CC--
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDLPHVVATAPVYEGVSHVGGDMLN-A--------VP-- 249 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~-~--------~p-- 249 (266)
++..+. ......+|||||||+|.++..+++.+ |+.+++++|...+++ ..+++++.+|+.+ + ++
T Consensus 13 ~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 13 IQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 344443 13456799999999999999999995 779999999966322 3789999999988 4 55
Q ss_pred CccEEEeccccccC
Q 042491 250 NADAVFMKVIVLIQ 263 (266)
Q Consensus 250 ~aD~~~l~~vLHd~ 263 (266)
.+|++++...+|..
T Consensus 88 ~~D~i~~~~~~~~~ 101 (180)
T 1ej0_A 88 KVQVVMSDMAPNMS 101 (180)
T ss_dssp CEEEEEECCCCCCC
T ss_pred ceeEEEECCCcccc
Confidence 39999998877754
No 147
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.15 E-value=4.5e-06 Score=76.62 Aligned_cols=79 Identities=10% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhC-------CC--------CCCeEEEEccC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATA-------PV--------YEGVSHVGGDM 244 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a-------~~--------~~ri~~~~gd~ 244 (266)
.+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +..++.+ +. .++|+++.+|-
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3444454 55678999999999999999999999889999998 5554444 22 26899998854
Q ss_pred C-CC--C----CCccEEEeccccc
Q 042491 245 L-NA--V----PNADAVFMKVIVL 261 (266)
Q Consensus 245 ~-~~--~----p~aD~~~l~~vLH 261 (266)
+ .+ + ..||+|++.+.++
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~ 334 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF 334 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC
T ss_pred cccccccccccCCCCEEEEeCccc
Confidence 4 32 2 2499999887764
No 148
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.15 E-value=1e-06 Score=74.78 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---CC---CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---VP---NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p---~aD~~~l 256 (266)
+..+|||||||+|..+..+++.+| +.+++.+|+ |+.++.+++ .+||+++.+|..+. ++ .+|+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 568999999999999999999998 899999998 777776653 46899999998762 22 4999997
Q ss_pred cc
Q 042491 257 KV 258 (266)
Q Consensus 257 ~~ 258 (266)
..
T Consensus 143 d~ 144 (248)
T 3tfw_A 143 DA 144 (248)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 149
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.15 E-value=1.8e-06 Score=69.16 Aligned_cols=70 Identities=16% Similarity=-0.001 Sum_probs=56.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCC------C-CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAV------P-NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~------p-~aD~~~ 255 (266)
....+|||+|||+|.++..+++ .+..+++++|. |.+++.++. .++++++.+|+.+.. + .+|+++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999999887 56679999998 777776654 258999999998731 3 499999
Q ss_pred eccccc
Q 042491 256 MKVIVL 261 (266)
Q Consensus 256 l~~vLH 261 (266)
+....|
T Consensus 122 ~~~~~~ 127 (187)
T 2fhp_A 122 LDPPYA 127 (187)
T ss_dssp ECCCGG
T ss_pred ECCCCC
Confidence 876654
No 150
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.15 E-value=3.3e-06 Score=71.23 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=54.4
Q ss_pred CceEEEecCCchHHHHHHHHH----CCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCCC--C---C--CccEEEecc
Q 042491 193 IRSLVDVGGGTGEELAEIVEF----YPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLNA--V---P--NADAVFMKV 258 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~---p--~aD~~~l~~ 258 (266)
..+|||||||+|..+..+++. +|+.+++.+|+ |++++.++. .++|+++.||..+. + + .+|++++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 469999999999999999998 79999999998 676666654 57899999999873 2 2 389988754
No 151
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.15 E-value=3.1e-06 Score=70.45 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCCC--CC---CccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLNA--VP---NADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~p---~aD~~~l~ 257 (266)
....+|||||||+|.++..+++. ..+++++|+ |.+++.+++ .++++++.+|+.+. ++ .+|+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 35579999999999999999998 568999998 777777665 67899999999763 44 39999876
No 152
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.14 E-value=2.4e-06 Score=72.77 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred CC-CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---CC--CccEEE
Q 042491 190 FD-GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---VP--NADAVF 255 (266)
Q Consensus 190 ~~-~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p--~aD~~~ 255 (266)
.. ...+|||||||+|.++..++++.+. +++++|+ |.+++.+++ .+||+++.+|+.+. ++ .+|+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999999887 9999998 777766653 46899999999883 43 399999
Q ss_pred ec
Q 042491 256 MK 257 (266)
Q Consensus 256 l~ 257 (266)
+.
T Consensus 125 ~n 126 (259)
T 3lpm_A 125 CN 126 (259)
T ss_dssp EC
T ss_pred EC
Confidence 85
No 153
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.14 E-value=2.6e-06 Score=71.95 Aligned_cols=65 Identities=12% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC--------------CCCCeEEEEccCCCC----CC-C
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP--------------VYEGVSHVGGDMLNA----VP-N 250 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~--------------~~~ri~~~~gd~~~~----~p-~ 250 (266)
....+|||||||+|.++..+++.+|+.+++++|. +.+++.++ ..++|+++.+|.++. ++ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999997 66665442 125799999998873 33 2
Q ss_pred -ccEEE
Q 042491 251 -ADAVF 255 (266)
Q Consensus 251 -aD~~~ 255 (266)
+|.++
T Consensus 128 ~~d~v~ 133 (246)
T 2vdv_E 128 QLSKMF 133 (246)
T ss_dssp CEEEEE
T ss_pred ccCEEE
Confidence 66665
No 154
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.14 E-value=3.2e-06 Score=71.46 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=58.8
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEecccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVPN-ADAVFMKVIVLI 262 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p~-aD~~~l~~vLHd 262 (266)
..+.+|+|||||.|-++..+. |..+.+.+|+ +.+++.++. ..++++..+|+.. +.|+ +|++++.-++|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999888 9999999998 777776664 5778999999998 4555 999999977775
No 155
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.14 E-value=1e-06 Score=70.25 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=55.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---CC-CccEEEecc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---VP-NADAVFMKV 258 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p-~aD~~~l~~ 258 (266)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. .+ .+|++++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999988 7779999998 777776653 25799999999873 33 499999865
Q ss_pred cc
Q 042491 259 IV 260 (266)
Q Consensus 259 vL 260 (266)
.+
T Consensus 109 ~~ 110 (177)
T 2esr_A 109 PY 110 (177)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 156
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.14 E-value=4.6e-06 Score=75.21 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEe
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV-------YEGVSHVGGDMLN-AVPN-ADAVFM 256 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~-~~p~-aD~~~l 256 (266)
.++|||||||+|.++...+++. .-+++.+|..++++.+++ .++|+++.+|+.+ ++|+ +|+++.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs 155 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 155 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence 3689999999999887666653 348999998655555443 6899999999988 6886 999875
No 157
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.13 E-value=4e-06 Score=68.95 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEeccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLN-AVP--NADAVFMKVIVL 261 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~-~~p--~aD~~~l~~vLH 261 (266)
....+|||||||+|.++..+. .+++++|..+. +++++.+|+.+ +++ .+|++++..+||
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLM 126 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence 456799999999999998883 57888898543 67899999988 565 399999999998
No 158
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.13 E-value=3.9e-06 Score=71.14 Aligned_cols=76 Identities=12% Similarity=0.265 Sum_probs=56.5
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCCC-c
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVPN-A 251 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p~-a 251 (266)
...+++..+ .....+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 345566555 5566899999999999999999996 68999998 666665543 4689999999998 6663 3
Q ss_pred cEEEecc
Q 042491 252 DAVFMKV 258 (266)
Q Consensus 252 D~~~l~~ 258 (266)
+..++.+
T Consensus 95 ~~~vv~n 101 (244)
T 1qam_A 95 SYKIFGN 101 (244)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 3344433
No 159
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.13 E-value=9.7e-07 Score=73.19 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C-----CCccEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V-----PNADAV 254 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-----p~aD~~ 254 (266)
+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.+++ .+||+++.+|..+. + ..+|++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 568999999999999999999999 789999998 777766553 46899999998763 2 239999
Q ss_pred Eeccc
Q 042491 255 FMKVI 259 (266)
Q Consensus 255 ~l~~v 259 (266)
++...
T Consensus 138 ~~d~~ 142 (223)
T 3duw_A 138 FIDAD 142 (223)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 87654
No 160
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.13 E-value=1e-06 Score=73.95 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=58.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEeccccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP--NADAVFMKVIVL 261 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~aD~~~l~~vLH 261 (266)
...+|||||||+|.++..+++.. .+++++|+ |.+++.++. .++++++.+|+.+..+ .+|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 45799999999999999999975 78999998 777776654 2589999999988323 499999988887
Q ss_pred cCC
Q 042491 262 IQD 264 (266)
Q Consensus 262 d~~ 264 (266)
..+
T Consensus 156 ~~~ 158 (241)
T 3gdh_A 156 GPD 158 (241)
T ss_dssp SGG
T ss_pred Ccc
Confidence 643
No 161
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.13 E-value=3.1e-06 Score=74.13 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=58.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-C--C---
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-A--V--- 248 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~--~--- 248 (266)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. |.+++.+++ .+|++++.+||.+ + +
T Consensus 17 e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 17 EVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 3445454 44567999999999999999999999999999998 777776653 3799999999876 2 1
Q ss_pred --CCccEEEe
Q 042491 249 --PNADAVFM 256 (266)
Q Consensus 249 --p~aD~~~l 256 (266)
..+|.+++
T Consensus 95 g~~~~D~Vl~ 104 (301)
T 1m6y_A 95 GIEKVDGILM 104 (301)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCCCEEEE
Confidence 24898886
No 162
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.13 E-value=5.5e-06 Score=72.34 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=58.3
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCCC--c
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVPN--A 251 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p~--a 251 (266)
..+++..+ .....+|||||||+|.+...+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ ++|. +
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 34555555 556679999999999999999998 468899998 666665543 4789999999998 6764 8
Q ss_pred cEEEec
Q 042491 252 DAVFMK 257 (266)
Q Consensus 252 D~~~l~ 257 (266)
|+++..
T Consensus 116 D~Iv~N 121 (295)
T 3gru_A 116 NKVVAN 121 (295)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 988854
No 163
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.12 E-value=1.2e-06 Score=69.15 Aligned_cols=68 Identities=18% Similarity=0.028 Sum_probs=55.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC-------CccEEEecc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP-------NADAVFMKV 258 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-------~aD~~~l~~ 258 (266)
...+|||+|||+|.++..+++..++ ++++|. |.+++.++. .-+++++.+|+.+..+ .+|++++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4579999999999999999999876 899998 777776654 1289999999887322 499999987
Q ss_pred ccc
Q 042491 259 IVL 261 (266)
Q Consensus 259 vLH 261 (266)
.+|
T Consensus 119 ~~~ 121 (171)
T 1ws6_A 119 PYA 121 (171)
T ss_dssp CTT
T ss_pred CCc
Confidence 765
No 164
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.11 E-value=3.6e-06 Score=71.72 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=57.2
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEeccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP--NADAVFMKVI 259 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p--~aD~~~l~~v 259 (266)
...+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..++.++.+|+.+ +++ .+|+++...+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 567999999999999999999999999999998 777776654 5789999999987 555 3999997654
No 165
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.10 E-value=4.8e-06 Score=68.91 Aligned_cols=68 Identities=7% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHH----HhhCCCCCCeEEEEccCCCC-----CCC-ccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHV----VATAPVYEGVSHVGGDMLNA-----VPN-ADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v----~~~a~~~~ri~~~~gd~~~~-----~p~-aD~~~l~ 257 (266)
.....+|||||||+|.++..+++..|+.+++++|+ |.+ ++.++...++.++.+|+..+ +++ +|++++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45667999999999999999999998778999998 543 33333346799999998763 334 9999875
No 166
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.10 E-value=3.3e-06 Score=70.71 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=50.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec--HHHHhhC---CC------CCCeEEEEccCCCCCCC--ccEEEecc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL--PHVVATA---PV------YEGVSHVGGDMLNAVPN--ADAVFMKV 258 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a---~~------~~ri~~~~gd~~~~~p~--aD~~~l~~ 258 (266)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.+ ++ ..+|+++.+|... +|. +|++....
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEEE
Confidence 557999999999999999999999999999998 4444443 33 3579999999876 342 35554443
Q ss_pred c
Q 042491 259 I 259 (266)
Q Consensus 259 v 259 (266)
+
T Consensus 103 ~ 103 (225)
T 3p2e_A 103 I 103 (225)
T ss_dssp E
T ss_pred E
Confidence 3
No 167
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.10 E-value=2.4e-06 Score=69.34 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=56.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-C-C-CC-ccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-A-V-PN-ADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~-~-p~-aD~~~l 256 (266)
.....+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ .++++++.+|+.+ + . ++ +|++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3456799999999999999999996 7789999998 777776654 3689999999876 2 3 33 999997
Q ss_pred cccc
Q 042491 257 KVIV 260 (266)
Q Consensus 257 ~~vL 260 (266)
...+
T Consensus 100 ~~~~ 103 (197)
T 3eey_A 100 NLGY 103 (197)
T ss_dssp EESB
T ss_pred cCCc
Confidence 7544
No 168
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.10 E-value=1.2e-05 Score=66.57 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=59.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-----CCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCCC----
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-----PHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNAV---- 248 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-----P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---- 248 (266)
.....+|||||||+|.++..+++.. |+.+++++|. +..++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456899999999999999999987 6789999998 666665543 258999999998854
Q ss_pred C---CccEEEeccccccC
Q 042491 249 P---NADAVFMKVIVLIQ 263 (266)
Q Consensus 249 p---~aD~~~l~~vLHd~ 263 (266)
+ .+|+|++...+|..
T Consensus 158 ~~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL 175 (227)
T ss_dssp HHHCCEEEEEECSBBSSC
T ss_pred ccCCCcCEEEECCchHHH
Confidence 2 39999998888753
No 169
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.09 E-value=3.8e-06 Score=67.84 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=55.9
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCC---C-C-CccEEEeccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNA---V-P-NADAVFMKVI 259 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~-p-~aD~~~l~~v 259 (266)
...+|||+|||+|.++..+++. +..+++++|+ |.+++.+++ .++++++.+|+.+. + + .+|++++.-.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4579999999999999988774 6668999998 777777664 36899999998872 3 2 4999999766
Q ss_pred ccc
Q 042491 260 VLI 262 (266)
Q Consensus 260 LHd 262 (266)
+|.
T Consensus 123 ~~~ 125 (189)
T 3p9n_A 123 YNV 125 (189)
T ss_dssp TTS
T ss_pred CCc
Confidence 554
No 170
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.08 E-value=4.9e-06 Score=74.25 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCC-
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVP- 249 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p- 249 (266)
..++.... +....+|||+|||+|.++.+++... |+.+++++|. |.+++.++. .++|+++.+|+.+ +.+
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 34455555 6677899999999999999999998 9999999998 777776654 2389999999998 433
Q ss_pred -CccEEEec
Q 042491 250 -NADAVFMK 257 (266)
Q Consensus 250 -~aD~~~l~ 257 (266)
.+|++++.
T Consensus 271 ~~~D~Ii~n 279 (354)
T 3tma_A 271 PEVDRILAN 279 (354)
T ss_dssp CCCSEEEEC
T ss_pred CCCCEEEEC
Confidence 47999883
No 171
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.07 E-value=1.4e-06 Score=73.35 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC---CCCC--ccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN---AVPN--ADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~---~~p~--aD~~~l 256 (266)
...+|||||||.|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|... ++|. ||.+++
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 5579999999999999999998885 7899998 888887764 4578889888654 3553 888864
No 172
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.06 E-value=1.7e-06 Score=71.67 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C------CCccE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V------PNADA 253 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~aD~ 253 (266)
+..+|||||||+|..+..+++.+| +.+++.+|. |+.++.+++ .++|+++.+|..+. + ..+|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 457999999999999999999998 789999998 677766553 46899999998762 2 34999
Q ss_pred EEeccc
Q 042491 254 VFMKVI 259 (266)
Q Consensus 254 ~~l~~v 259 (266)
+++...
T Consensus 144 v~~~~~ 149 (225)
T 3tr6_A 144 IYIDAD 149 (225)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 996543
No 173
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.06 E-value=2.1e-06 Score=73.33 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=62.2
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC-C-ccEEEecccccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP-N-ADAVFMKVIVLI 262 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~-aD~~~l~~vLHd 262 (266)
..+.+|+|||||.|-++..+...+|+.+.+.+|+ +.+++.+++ ..+.++...|+..+.| + +|++++.-++|.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 667766554 4568999999999644 4 999999998886
Q ss_pred C
Q 042491 263 Q 263 (266)
Q Consensus 263 ~ 263 (266)
-
T Consensus 211 L 211 (281)
T 3lcv_B 211 L 211 (281)
T ss_dssp H
T ss_pred h
Confidence 3
No 174
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.05 E-value=4.3e-06 Score=69.91 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HH----HHhhCCCCCCeEEEEccCCCC--CC----CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PH----VVATAPVYEGVSHVGGDMLNA--VP----NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~----v~~~a~~~~ri~~~~gd~~~~--~p----~aD~~~l~ 257 (266)
+....+|||||||+|.++..+++.+ |+.+++++|+ |. +++.++...+++++.+|+.++ +| .+|++++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4566899999999999999999997 7889999998 43 344443357899999999883 22 38999974
No 175
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.04 E-value=3.6e-06 Score=72.69 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p-~aD~~~l 256 (266)
...+|||||||+|..++++++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999999878889999998 777775542 47999999998762 23 3999998
Q ss_pred cc
Q 042491 257 KV 258 (266)
Q Consensus 257 ~~ 258 (266)
--
T Consensus 155 d~ 156 (275)
T 1iy9_A 155 DS 156 (275)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 176
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.04 E-value=5.2e-06 Score=69.30 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=54.1
Q ss_pred ceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------C-CCeEEEEccCCC---CC-C-CccEEEecc
Q 042491 194 RSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------Y-EGVSHVGGDMLN---AV-P-NADAVFMKV 258 (266)
Q Consensus 194 ~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~---~~-p-~aD~~~l~~ 258 (266)
.+|||||||+|..+..+++..| +.+++.+|. |+.++.+++ . +||+++.||..+ .+ + .||++++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999986 789999998 666666553 3 689999999876 24 3 399998864
Q ss_pred cc
Q 042491 259 IV 260 (266)
Q Consensus 259 vL 260 (266)
..
T Consensus 138 ~~ 139 (221)
T 3dr5_A 138 SP 139 (221)
T ss_dssp CT
T ss_pred cH
Confidence 43
No 177
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.04 E-value=1.1e-05 Score=66.89 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHh----hCCCCCCeEEEEccCCCC-----CC-CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVA----TAPVYEGVSHVGGDMLNA-----VP-NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~----~a~~~~ri~~~~gd~~~~-----~p-~aD~~~l~ 257 (266)
.....+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.++ ++ .+|++++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4466799999999999999999985 6789999998 54443 333357899999999872 23 39999964
Q ss_pred c
Q 042491 258 V 258 (266)
Q Consensus 258 ~ 258 (266)
.
T Consensus 151 ~ 151 (227)
T 1g8a_A 151 V 151 (227)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.03 E-value=8.7e-06 Score=67.59 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=56.4
Q ss_pred CCCCceEEEecCC-chHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccC--CCCCC--CccEEEecc
Q 042491 190 FDGIRSLVDVGGG-TGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDM--LNAVP--NADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~--~~~~p--~aD~~~l~~ 258 (266)
.....+||||||| +|.++..+++.. ..+++++|. |.+++.+++ .-+++++.+|+ +.+++ .+|++++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3466899999999 999999999987 779999998 777776653 23899999996 44555 399999864
Q ss_pred ccc
Q 042491 259 IVL 261 (266)
Q Consensus 259 vLH 261 (266)
..|
T Consensus 132 p~~ 134 (230)
T 3evz_A 132 PYY 134 (230)
T ss_dssp CCC
T ss_pred CCc
Confidence 443
No 179
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.02 E-value=5.2e-06 Score=70.53 Aligned_cols=69 Identities=23% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEeccccccC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-YEGVSHVGGDMLN-AVP--NADAVFMKVIVLIQ 263 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~-~~p--~aD~~~l~~vLHd~ 263 (266)
...+|||||||+|.++..+++. ..+++++|. +.+++.+++ ... .++.+|+.+ ++| .+|++++..+++.|
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 5679999999999999999987 468999998 777776654 222 388899987 565 39999998866554
No 180
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.02 E-value=6.4e-06 Score=68.52 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCC------CCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCCCC--
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYP------HIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNAVP-- 249 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P------~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p-- 249 (266)
.....+|||||||+|.++..+++..+ ..+++++|. |++++.+++ .++++++.+|..+++|
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 34567999999999999999999766 368999997 666666553 2589999999988654
Q ss_pred -CccEEEeccccccC
Q 042491 250 -NADAVFMKVIVLIQ 263 (266)
Q Consensus 250 -~aD~~~l~~vLHd~ 263 (266)
.+|++++...+|..
T Consensus 162 ~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 162 APYNAIHVGAAAPDT 176 (227)
T ss_dssp CSEEEEEECSCBSSC
T ss_pred CCccEEEECCchHHH
Confidence 39999999888764
No 181
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.02 E-value=8.4e-06 Score=66.21 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEec
Q 042491 195 SLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN-AVP--NADAVFMK 257 (266)
Q Consensus 195 ~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~-~~p--~aD~~~l~ 257 (266)
+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+ ++| .+|++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence 9999999999999999987 568999998 777776654 3489999999988 555 39999984
No 182
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.02 E-value=6.1e-06 Score=72.09 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=53.9
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CCCCc
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AVPNA 251 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~p~a 251 (266)
..+++..+ .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.+
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34455555 556689999999999999999987 458999998 666665543 3689999999988 56679
Q ss_pred cEEEec
Q 042491 252 DAVFMK 257 (266)
Q Consensus 252 D~~~l~ 257 (266)
|++++.
T Consensus 108 D~Vv~n 113 (299)
T 2h1r_A 108 DVCTAN 113 (299)
T ss_dssp SEEEEE
T ss_pred CEEEEc
Confidence 998873
No 183
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.00 E-value=2.5e-06 Score=70.91 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=55.1
Q ss_pred CCCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C------CCcc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V------PNAD 252 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~aD 252 (266)
.+..+|||||||+|..+..+++..| +.+++++|. |..++.+++ .++|+++.+|+.+. + ..+|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3567999999999999999999988 789999998 666665553 37899999998662 2 3499
Q ss_pred EEEecc
Q 042491 253 AVFMKV 258 (266)
Q Consensus 253 ~~~l~~ 258 (266)
++++..
T Consensus 148 ~v~~d~ 153 (229)
T 2avd_A 148 VAVVDA 153 (229)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998753
No 184
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=98.00 E-value=7.7e-06 Score=74.38 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC------CCC--
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN------AVP-- 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~------~~p-- 249 (266)
...+++.+. .....+|||||||+|.++..++++. .+++++|. +.+++.+++. .+......|.. +++
T Consensus 96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 455666665 5667899999999999999999874 48999998 6777766542 34433322221 122
Q ss_pred CccEEEeccccccCCC
Q 042491 250 NADAVFMKVIVLIQDL 265 (266)
Q Consensus 250 ~aD~~~l~~vLHd~~~ 265 (266)
.+|+|++.++||++++
T Consensus 171 ~fD~I~~~~vl~h~~d 186 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY 186 (416)
T ss_dssp CEEEEEEESCGGGCTT
T ss_pred CEEEEEECChHHhcCC
Confidence 4999999999999865
No 185
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.00 E-value=6.2e-06 Score=71.17 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=54.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCC-C-CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAV-P-NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p-~aD~~~l~ 257 (266)
...+|||+|||+|.++..+++..+. +++++|+ |.+++.+++ .++++++.+|+++.. + .+|++++.
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~ 199 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence 4689999999999999999999887 8999998 777776553 457999999999843 3 39999884
No 186
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.00 E-value=3.3e-06 Score=73.92 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC--CccEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP--NADAV 254 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p--~aD~~ 254 (266)
....+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|+.+. .+ .+|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3568999999999999999999888889999998 777765542 47899999998772 13 39999
Q ss_pred EeccccccC
Q 042491 255 FMKVIVLIQ 263 (266)
Q Consensus 255 ~l~~vLHd~ 263 (266)
++....+.+
T Consensus 174 i~d~~~~~~ 182 (304)
T 3bwc_A 174 IIDTTDPAG 182 (304)
T ss_dssp EEECC----
T ss_pred EECCCCccc
Confidence 986655543
No 187
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.99 E-value=4.8e-06 Score=69.94 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C-----------
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V----------- 248 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~----------- 248 (266)
+..+|||||||+|..+..+++.+| ..+++++|. |..++.+++ .++|+++.+|+.+. +
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 457999999999999999999998 689999998 777766553 35799999998662 2
Q ss_pred ------CCccEEEeccccc
Q 042491 249 ------PNADAVFMKVIVL 261 (266)
Q Consensus 249 ------p~aD~~~l~~vLH 261 (266)
..+|+|++.....
T Consensus 140 ~f~~~~~~fD~I~~~~~~~ 158 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE 158 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG
T ss_pred cccCCCCCcCEEEEeCCHH
Confidence 3499999875443
No 188
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.99 E-value=1.7e-05 Score=65.64 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCCCC---CccE
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNAVP---NADA 253 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~aD~ 253 (266)
.....+|||||||+|..+..+++.. |..+++++|. |..++.+++ .++++++.+|+....+ .+|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999985 7789999998 676665543 2589999999886422 4999
Q ss_pred EEeccccccC
Q 042491 254 VFMKVIVLIQ 263 (266)
Q Consensus 254 ~~l~~vLHd~ 263 (266)
+++...++..
T Consensus 155 i~~~~~~~~~ 164 (226)
T 1i1n_A 155 IHVGAAAPVV 164 (226)
T ss_dssp EEECSBBSSC
T ss_pred EEECCchHHH
Confidence 9998877654
No 189
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.99 E-value=2.9e-06 Score=72.24 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEecccc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP--NADAVFMKVIV 260 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p--~aD~~~l~~vL 260 (266)
.+..+|||||||+|.++..+++..+ +++++|. |.+++.+++ .-.+++..+|+.+.+| .+|++++....
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcH
Confidence 3567999999999999999999876 9999998 666665553 1128999999887554 49999976443
No 190
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.98 E-value=2.8e-06 Score=69.77 Aligned_cols=66 Identities=24% Similarity=0.168 Sum_probs=54.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC--C-CCCccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN--A-VPNADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~--~-~p~aD~~~l~ 257 (266)
+..+|||||||+|..+..+++..| +.+++.+|. |.+++.+++ .++|+++.+|..+ + .+++|++++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence 457999999999999999999998 789999998 777776653 3589999999876 2 2238999875
No 191
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.98 E-value=1.8e-05 Score=67.26 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-CCCC-c-cE
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-AVPN-A-DA 253 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~~p~-a-D~ 253 (266)
..+++..+ .....+|||||||+|.+...++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. . +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 34555555 556689999999999999999987 5678999998 667766554 4689999999998 5653 2 34
Q ss_pred EEecc
Q 042491 254 VFMKV 258 (266)
Q Consensus 254 ~~l~~ 258 (266)
.++.|
T Consensus 98 ~vv~N 102 (249)
T 3ftd_A 98 KVVGN 102 (249)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 192
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.98 E-value=3.3e-06 Score=70.73 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=52.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCC---CCC--CccEEEe-ccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLN---AVP--NADAVFM-KVI 259 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~---~~p--~aD~~~l-~~v 259 (266)
...+|||||||+|.++..+++..+. +++++|. |.+++.+++ ..+++++.+|+.+ +++ .+|+|++ ...
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 4579999999999999999665543 8999998 777766653 4679999999876 455 3999998 443
No 193
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.98 E-value=3e-05 Score=66.80 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=57.1
Q ss_pred CCceEEEecCCc---hHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCC---C--C----Ccc
Q 042491 192 GIRSLVDVGGGT---GEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNA---V--P----NAD 252 (266)
Q Consensus 192 ~~~~vvDvGgG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~--p----~aD 252 (266)
+..+|||||||. |.....+.+..|+.+++.+|. |.+++.++. ..+++++.+|+.++ + | .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 678999999996 444444556789999999998 999988864 24799999999873 1 1 145
Q ss_pred -----EEEeccccccCCC
Q 042491 253 -----AVFMKVIVLIQDL 265 (266)
Q Consensus 253 -----~~~l~~vLHd~~~ 265 (266)
++++..+||.-++
T Consensus 158 ~~~p~av~~~avLH~l~d 175 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLD 175 (277)
T ss_dssp TTSCCEEEEESCGGGSCG
T ss_pred cCCcchHHhhhhHhcCCc
Confidence 6889999997654
No 194
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.97 E-value=1.3e-05 Score=68.67 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=59.2
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC---------CCCeEEEEccCCC-CC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV---------YEGVSHVGGDMLN-AV 248 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~-~~ 248 (266)
.++..++ .....+|||||||+|.++..+++. .|..+++.+|. |.+++.+++ .++++++.+|+.+ ++
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4555555 566789999999999999999996 58899999998 777665543 2589999999988 45
Q ss_pred C--CccEEEe
Q 042491 249 P--NADAVFM 256 (266)
Q Consensus 249 p--~aD~~~l 256 (266)
+ .+|+|++
T Consensus 168 ~~~~~D~v~~ 177 (280)
T 1i9g_A 168 PDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEEE
T ss_pred CCCceeEEEE
Confidence 4 3999987
No 195
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.96 E-value=6.6e-06 Score=69.56 Aligned_cols=70 Identities=11% Similarity=-0.015 Sum_probs=55.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CC------------------------------
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YE------------------------------ 235 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~------------------------------ 235 (266)
....+|||||||+|.++..+++..+ .+++++|. +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999998877 68999998 666665543 11
Q ss_pred -Ce-EEEEccCCCC--C-C---C-ccEEEeccccc
Q 042491 236 -GV-SHVGGDMLNA--V-P---N-ADAVFMKVIVL 261 (266)
Q Consensus 236 -ri-~~~~gd~~~~--~-p---~-aD~~~l~~vLH 261 (266)
+| +++.+|+.+. + + + +|+|++..+||
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~ 168 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD 168 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence 28 9999999873 1 2 3 99999999999
No 196
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.96 E-value=2.2e-05 Score=65.79 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=57.5
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCC-C--
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAV-P-- 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p-- 249 (266)
.++...+ .....+|||+|||+|.++..+++. ..+++++|. |+.++.+++ .++++++.+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444455 556789999999999999999999 679999997 666665553 378999999999865 5
Q ss_pred CccEEEe
Q 042491 250 NADAVFM 256 (266)
Q Consensus 250 ~aD~~~l 256 (266)
.+|++++
T Consensus 158 ~~D~v~~ 164 (248)
T 2yvl_A 158 IFHAAFV 164 (248)
T ss_dssp CBSEEEE
T ss_pred cccEEEE
Confidence 3999987
No 197
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.96 E-value=2e-06 Score=72.79 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C-----C-CccE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V-----P-NADA 253 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-----p-~aD~ 253 (266)
+..+|||||||+|..+..+++..| +.+++.+|+ |+.++.+++ .+||+++.||..+. + + .+|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 457999999999999999999997 789999998 555554443 46999999998762 2 2 4999
Q ss_pred EEeccc
Q 042491 254 VFMKVI 259 (266)
Q Consensus 254 ~~l~~v 259 (266)
+++...
T Consensus 140 V~~d~~ 145 (242)
T 3r3h_A 140 IFIDAD 145 (242)
T ss_dssp EEEESC
T ss_pred EEEcCC
Confidence 987644
No 198
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.96 E-value=4.9e-06 Score=68.18 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=53.6
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------C--CCeEEEEccCCCC---C--CC-ccEEEec
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------Y--EGVSHVGGDMLNA---V--PN-ADAVFMK 257 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~---~--p~-aD~~~l~ 257 (266)
..+|||+|||+|.++..++++.+ .+++++|+ |.+++.+++ . ++++++.+|+.+. + .. +|++++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 46999999999999999887754 58999998 777776654 2 6899999998762 2 25 8999987
Q ss_pred cccc
Q 042491 258 VIVL 261 (266)
Q Consensus 258 ~vLH 261 (266)
-.+|
T Consensus 133 ~~~~ 136 (201)
T 2ift_A 133 PPFH 136 (201)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6644
No 199
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.95 E-value=1.3e-05 Score=69.19 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=52.2
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---CCCeEEEEccCCC-CCC---Ccc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---YEGVSHVGGDMLN-AVP---NAD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~-~~p---~aD 252 (266)
.+++..+ .... +|||||||+|.+...++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+|
T Consensus 38 ~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 38 RIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 4555555 4455 99999999999999999986 57888888 556555443 4689999999998 555 355
Q ss_pred EEE
Q 042491 253 AVF 255 (266)
Q Consensus 253 ~~~ 255 (266)
.++
T Consensus 113 ~iv 115 (271)
T 3fut_A 113 LLV 115 (271)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 200
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.95 E-value=1.4e-05 Score=68.49 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCCCCCccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNAVPNADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~p~aD~~~l~ 257 (266)
...+|||||||+|..++++++. | .+++++|+ |.+++.+++ .+|++++.+|..+-+..+|+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC
Confidence 5689999999999999999998 8 89999998 888887764 368999999988744449999874
No 201
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.95 E-value=1.6e-05 Score=70.27 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=57.2
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHH-CCCCeEEEeec-HHHHhhCCC-----------------CCCeEEEEc
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF-YPHIKGVNFDL-PHVVATAPV-----------------YEGVSHVGG 242 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-----------------~~ri~~~~g 242 (266)
++..++ .....+|||||||+|.++..+++. .|+.+++.+|. |..++.+++ .++|+++.+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 444455 556789999999999999999998 58899999998 666665543 268999999
Q ss_pred cCCCC---CC--CccEEEec
Q 042491 243 DMLNA---VP--NADAVFMK 257 (266)
Q Consensus 243 d~~~~---~p--~aD~~~l~ 257 (266)
|+.+. ++ .+|+|++.
T Consensus 175 d~~~~~~~~~~~~fD~V~~~ 194 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALD 194 (336)
T ss_dssp CTTCCC-------EEEEEEC
T ss_pred ChHHcccccCCCCeeEEEEC
Confidence 99883 44 39999874
No 202
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.95 E-value=1.5e-05 Score=75.65 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----C--CCeEEEEccCCC---CC-C-CccEEEecc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----Y--EGVSHVGGDMLN---AV-P-NADAVFMKV 258 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~ri~~~~gd~~~---~~-p-~aD~~~l~~ 258 (266)
.+..+|||||||.|.++..+++. +.+++++|+ +..|+.|+. . -.|+|..++..+ +. + .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35679999999999999999998 568999998 777776653 2 368999998765 23 3 399999999
Q ss_pred ccccC
Q 042491 259 IVLIQ 263 (266)
Q Consensus 259 vLHd~ 263 (266)
+||+-
T Consensus 143 ~~ehv 147 (569)
T 4azs_A 143 VFHHI 147 (569)
T ss_dssp CHHHH
T ss_pred chhcC
Confidence 99863
No 203
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.93 E-value=1.8e-05 Score=68.26 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=54.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec--HHHHhhCCC------------C----CCeEEEEccCCCC---C-
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL--PHVVATAPV------------Y----EGVSHVGGDMLNA---V- 248 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~------------~----~ri~~~~gd~~~~---~- 248 (266)
....+|||||||+|.++..+++.. ..+++++|+ |.+++.++. . ++|+++..|+.+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 355799999999999999888763 458999999 677665432 1 4788887665542 2
Q ss_pred ----C-CccEEEeccccccCC
Q 042491 249 ----P-NADAVFMKVIVLIQD 264 (266)
Q Consensus 249 ----p-~aD~~~l~~vLHd~~ 264 (266)
+ .+|+|++..++|+..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~ 177 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ 177 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG
T ss_pred hhccCCCCCEEEEeCcccChH
Confidence 2 499999999998754
No 204
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.93 E-value=1e-05 Score=69.67 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=57.1
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCC-CC-CccEEEecc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNA-VP-NADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p-~aD~~~l~~ 258 (266)
+.+..+|||+|||+|.++..+++..+..+++.+|+ |.+++.+++ .++++++.+|+.+. .+ .+|++++.-
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECC
Confidence 44668999999999999999999999889999998 777776654 35789999999884 22 399998754
No 205
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.92 E-value=6.6e-06 Score=74.08 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP--NADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p--~aD~~~l~ 257 (266)
.+..+|||+|||+|.++.++++..+..+++++|+ |.+++.++. .++|+++.+|+.+ +.+ .+|++++.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 4668999999999999999999998888999998 777776654 3689999999998 554 39999984
No 206
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.92 E-value=2.2e-05 Score=64.02 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CC-CeEEEEccCCCCCC-CccEEEeccccccCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YE-GVSHVGGDMLNAVP-NADAVFMKVIVLIQD 264 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~-ri~~~~gd~~~~~p-~aD~~~l~~vLHd~~ 264 (266)
...+|||+|||+|.++..+++..+ .+++++|. |.+++.++. .. +++++.+|+.+ +| .+|++++.-.+|.+.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcccc
Confidence 457999999999999999998843 37999998 777766553 12 79999999988 45 599999987776654
No 207
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.91 E-value=2.7e-05 Score=63.35 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEEEEccCCCCC------------
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAV------------ 248 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~------------ 248 (266)
.+.+.+. .+....+|||+|||+|.++..++++ ..+++++|+.+. ...++++++.+|+.+.-
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 4555555 2456789999999999999999988 778999998542 22468999999998831
Q ss_pred --CCccEEEec
Q 042491 249 --PNADAVFMK 257 (266)
Q Consensus 249 --p~aD~~~l~ 257 (266)
..+|+|+..
T Consensus 88 ~~~~~D~Vlsd 98 (191)
T 3dou_A 88 GIEKVDDVVSD 98 (191)
T ss_dssp TCSSEEEEEEC
T ss_pred cCCcceEEecC
Confidence 258999873
No 208
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.91 E-value=7.7e-06 Score=72.64 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCC---CCC--CccEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLN---AVP--NADAV 254 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~---~~p--~aD~~ 254 (266)
....+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+||+++.+|..+ ..+ .+|+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888899999998 777776543 3689999999876 233 39999
Q ss_pred Eec
Q 042491 255 FMK 257 (266)
Q Consensus 255 ~l~ 257 (266)
++.
T Consensus 199 i~d 201 (334)
T 1xj5_A 199 IVD 201 (334)
T ss_dssp EEC
T ss_pred EEC
Confidence 974
No 209
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.91 E-value=4.8e-06 Score=73.53 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=55.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p-~aD~~~l 256 (266)
...+|||||||+|..++++++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999999888899999998 777765542 36899999998763 23 3999997
Q ss_pred cc
Q 042491 257 KV 258 (266)
Q Consensus 257 ~~ 258 (266)
..
T Consensus 196 d~ 197 (321)
T 2pt6_A 196 DS 197 (321)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 210
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=97.90 E-value=3.2e-05 Score=67.57 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=52.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CC-------CeEEEEccCCC---------CCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YE-------GVSHVGGDMLN---------AVP 249 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~-------ri~~~~gd~~~---------~~p 249 (266)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++ .. ++++..+|+.. ++|
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35799999999998777766643 458999998 788877764 11 26788888722 234
Q ss_pred --CccEEEecccccc
Q 042491 250 --NADAVFMKVIVLI 262 (266)
Q Consensus 250 --~aD~~~l~~vLHd 262 (266)
.+|+|++..+||.
T Consensus 127 ~~~FD~V~~~~~lhy 141 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHY 141 (302)
T ss_dssp SSCEEEEEEESCGGG
T ss_pred CCCeeEEEECchHHH
Confidence 4999999999986
No 211
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.90 E-value=7.8e-06 Score=70.78 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCC--CeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-CCCC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPH--IKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-AVPN 250 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~~p~ 250 (266)
.+++..+ .....+|||||||+|.+...|+++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 33 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 3555555 556689999999999999999998765 56899998 667766554 4789999999998 5553
No 212
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.89 E-value=2.4e-05 Score=70.99 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=52.8
Q ss_pred CCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCCCCCeEEEEccCCCCCC--CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLNAVP--NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p--~aD~~~l~ 257 (266)
...+|+|+|||+|.++..+++++ +..+++++|+ |.+++.+ .+++++.+|+++..+ .+|+|++.
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 45699999999999999999988 7789999998 6655554 789999999998433 49999983
No 213
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.89 E-value=1.3e-05 Score=68.43 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=52.2
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP 249 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p 249 (266)
..+++..+ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 34555555 5567899999999999999999985 58899998 667666553 4799999999998 553
No 214
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.89 E-value=1.9e-05 Score=71.66 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=58.6
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPH--------------------------------------IKGVNF 222 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~--------------------------------------l~~~~~ 222 (266)
.++.... |.+...|+|++||+|+++++.+....+ .+++++
T Consensus 192 ~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 192 ALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 3455555 667789999999999999998876554 579999
Q ss_pred ec-HHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEec
Q 042491 223 DL-PHVVATAPV-------YEGVSHVGGDMLN-AVP-NADAVFMK 257 (266)
Q Consensus 223 Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p-~aD~~~l~ 257 (266)
|. |.+++.++. .++|+++.+|+++ +.+ .+|+|++.
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN 314 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence 98 777776653 4579999999998 444 49999875
No 215
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.89 E-value=4.6e-06 Score=70.78 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC--C-C------C-Ccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN--A-V------P-NAD 252 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~--~-~------p-~aD 252 (266)
+..+|||||||+|..+..+++..| +.+++.+|. |++++.+++ .+||+++.+|..+ + + + .||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 557999999999999999999998 789999998 666665553 3689999999876 2 2 3 399
Q ss_pred EEEecc
Q 042491 253 AVFMKV 258 (266)
Q Consensus 253 ~~~l~~ 258 (266)
++++..
T Consensus 159 ~V~~d~ 164 (247)
T 1sui_A 159 FIFVDA 164 (247)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999754
No 216
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.88 E-value=2.9e-05 Score=70.13 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCC-CC--CccEEEecccccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNA-VP--NADAVFMKVIVLI 262 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p--~aD~~~l~~vLHd 262 (266)
...+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .-+++++.+|+.+. .+ .+|+|++.-.+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4579999999999999999998 569999998 777776654 23599999999984 44 4999999888875
No 217
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.88 E-value=1e-05 Score=66.32 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=53.7
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC--CCC--CccEEEeccccc
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN--AVP--NADAVFMKVIVL 261 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~--~~p--~aD~~~l~~vLH 261 (266)
..+|||+|||+|.++..++++.. .+++.+|. |.+++.+++ .++++++.+|+.+ +.+ .+|++++.-.+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 46999999999999999888764 38999998 777776654 2589999999877 332 399999876544
No 218
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.87 E-value=9.1e-06 Score=71.22 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=55.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP-NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p-~aD~~~ 255 (266)
....+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999988899999998 777765542 47899999998762 23 399999
Q ss_pred ecc
Q 042491 256 MKV 258 (266)
Q Consensus 256 l~~ 258 (266)
+..
T Consensus 174 ~d~ 176 (304)
T 2o07_A 174 TDS 176 (304)
T ss_dssp EEC
T ss_pred ECC
Confidence 743
No 219
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.87 E-value=3.7e-05 Score=61.93 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=55.3
Q ss_pred HHhhcccCCCCCceEEEecCCchHHHHHHHHHCCC---------CeEEEeecHHHHhhCCCCCCeEEE-EccCCCC----
Q 042491 182 LLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPH---------IKGVNFDLPHVVATAPVYEGVSHV-GGDMLNA---- 247 (266)
Q Consensus 182 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~---------l~~~~~Dlp~v~~~a~~~~ri~~~-~gd~~~~---- 247 (266)
+...+. .+....+|||||||+|.++..+++++|. .+++++|+.+.. ..++++++ .+|+.+.
T Consensus 13 l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 13 VNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHH
T ss_pred HHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHH
Confidence 334444 1345689999999999999999999875 799999986521 24678999 9998762
Q ss_pred -----CC--CccEEEecccc
Q 042491 248 -----VP--NADAVFMKVIV 260 (266)
Q Consensus 248 -----~p--~aD~~~l~~vL 260 (266)
++ .+|+|++...+
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAP 107 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCC
T ss_pred HHHHhcCCCCCcEEEeCCCC
Confidence 23 49999975433
No 220
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.87 E-value=7.6e-06 Score=70.88 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP-NADAVF 255 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p-~aD~~~ 255 (266)
....+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999999888899999998 777765542 37899999998762 24 399999
Q ss_pred ecc
Q 042491 256 MKV 258 (266)
Q Consensus 256 l~~ 258 (266)
+..
T Consensus 157 ~d~ 159 (283)
T 2i7c_A 157 VDS 159 (283)
T ss_dssp EEC
T ss_pred EcC
Confidence 843
No 221
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.86 E-value=8.5e-06 Score=71.06 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=54.1
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNA---VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p-~aD~~~l 256 (266)
...+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999888899999998 777765542 47999999997662 23 3999997
Q ss_pred c
Q 042491 257 K 257 (266)
Q Consensus 257 ~ 257 (266)
.
T Consensus 170 d 170 (296)
T 1inl_A 170 D 170 (296)
T ss_dssp E
T ss_pred c
Confidence 3
No 222
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.86 E-value=8.4e-06 Score=70.52 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=54.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC----------------CCCCeEEEEccCCCCC--C-Cc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP----------------VYEGVSHVGGDMLNAV--P-NA 251 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----------------~~~ri~~~~gd~~~~~--p-~a 251 (266)
...+|||||||+|..++.+++. |..+++++|+ |.+++.++ ..+|++++.+|..+.+ + .+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 5579999999999999999998 8889999998 77766543 2468999999976522 4 49
Q ss_pred cEEEeccc
Q 042491 252 DAVFMKVI 259 (266)
Q Consensus 252 D~~~l~~v 259 (266)
|+|++...
T Consensus 154 D~Ii~d~~ 161 (281)
T 1mjf_A 154 DVIIADST 161 (281)
T ss_dssp EEEEEECC
T ss_pred eEEEECCC
Confidence 99997544
No 223
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.85 E-value=9.5e-06 Score=71.36 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCC---CC-CccEEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNA---VP-NADAVF 255 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~---~p-~aD~~~ 255 (266)
...+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 558999999999999999999888889999998 777765442 36899999998763 23 399999
Q ss_pred ecccccc
Q 042491 256 MKVIVLI 262 (266)
Q Consensus 256 l~~vLHd 262 (266)
+....|.
T Consensus 157 ~d~~~~~ 163 (314)
T 1uir_A 157 IDLTDPV 163 (314)
T ss_dssp EECCCCB
T ss_pred ECCCCcc
Confidence 8765543
No 224
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.84 E-value=1.8e-05 Score=71.60 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=58.5
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPH--------------------------------------IKGVNF 222 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~--------------------------------------l~~~~~ 222 (266)
.++.... |.+..+|+|++||+|+++++++....+ .+++++
T Consensus 186 ~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 186 GLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 4455555 667789999999999999998876433 579999
Q ss_pred ec-HHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEec
Q 042491 223 DL-PHVVATAPV-------YEGVSHVGGDMLN-AVPN-ADAVFMK 257 (266)
Q Consensus 223 Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p~-aD~~~l~ 257 (266)
|. |.+++.++. .++|+++.+|+++ +.|+ +|+|++.
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N 308 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN 308 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence 98 788877664 3589999999998 3444 9999873
No 225
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.82 E-value=7.5e-06 Score=68.91 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC--C-C------C-Ccc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN--A-V------P-NAD 252 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~--~-~------p-~aD 252 (266)
+..+|||||||+|..+..+++..| +.+++.+|. |+.++.+++ .+||+++.+|..+ + + + .+|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 567999999999999999999998 789999998 777766553 4589999999876 2 2 3 399
Q ss_pred EEEecc
Q 042491 253 AVFMKV 258 (266)
Q Consensus 253 ~~~l~~ 258 (266)
++++..
T Consensus 150 ~I~~d~ 155 (237)
T 3c3y_A 150 FGFVDA 155 (237)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998753
No 226
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.81 E-value=3.2e-05 Score=69.97 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPH--------------------------------------IKGVNF 222 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~--------------------------------------l~~~~~ 222 (266)
.++.... |.+...|+|.+||+|+++++.+....+ .+++++
T Consensus 185 all~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 185 AIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 3454455 667789999999999999998876554 579999
Q ss_pred ec-HHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEec
Q 042491 223 DL-PHVVATAPV-------YEGVSHVGGDMLN-AVP-NADAVFMK 257 (266)
Q Consensus 223 Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p-~aD~~~l~ 257 (266)
|. +.+++.++. .++|+++.+|+++ +.+ .+|++++.
T Consensus 263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN 307 (384)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence 98 777776653 4689999999998 444 49999874
No 227
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.80 E-value=8.2e-06 Score=71.85 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----------CCCeEEEEccCCCCC---C-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----------YEGVSHVGGDMLNAV---P-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p-~aD~~~l 256 (266)
...+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+||+++.+|..+.+ + .+|+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 557999999999999999999888899999998 777765542 368999999987632 3 3999997
Q ss_pred cc
Q 042491 257 KV 258 (266)
Q Consensus 257 ~~ 258 (266)
.-
T Consensus 188 d~ 189 (314)
T 2b2c_A 188 DS 189 (314)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 228
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.79 E-value=6.7e-06 Score=68.89 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=54.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCC---C------CCccE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNA---V------PNADA 253 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~aD~ 253 (266)
+..+|||||||+|..+..+++..| +.+++.+|. |..++.+++ .++|+++.+|..+. + ..+|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999998 789999998 666666553 36899999997651 2 34999
Q ss_pred EEeccc
Q 042491 254 VFMKVI 259 (266)
Q Consensus 254 ~~l~~v 259 (266)
+++...
T Consensus 152 V~~d~~ 157 (232)
T 3cbg_A 152 IFIDAD 157 (232)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 987644
No 229
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.77 E-value=5.6e-05 Score=69.35 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCC-----
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAV----- 248 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~----- 248 (266)
.+++.++ ..+..+|+|+|||+|.++..+++. ..+++++|. +.+++.++. .++++++.+|+.+.+
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 445679999999999999999988 568999998 777776653 358999999998842
Q ss_pred C--CccEEEe
Q 042491 249 P--NADAVFM 256 (266)
Q Consensus 249 p--~aD~~~l 256 (266)
+ .+|++++
T Consensus 353 ~~~~fD~Vv~ 362 (433)
T 1uwv_A 353 AKNGFDKVLL 362 (433)
T ss_dssp GTTCCSEEEE
T ss_pred hcCCCCEEEE
Confidence 2 3899986
No 230
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.74 E-value=2e-05 Score=67.88 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=49.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--C------------C---------------------
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--Y------------E--------------------- 235 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~------------~--------------------- 235 (266)
...+|||||||+|.+ ..++...+..+++++|+ +.+++.+++ . .
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 457999999999994 44444445669999998 666664432 0 0
Q ss_pred -CeEEEEccCCCC-------CCC--ccEEEecccccc
Q 042491 236 -GVSHVGGDMLNA-------VPN--ADAVFMKVIVLI 262 (266)
Q Consensus 236 -ri~~~~gd~~~~-------~p~--aD~~~l~~vLHd 262 (266)
.++++.+|+.+. +|. +|+|++..+||.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~ 186 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA 186 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhh
Confidence 145677798772 222 999999999986
No 231
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.70 E-value=1e-05 Score=69.08 Aligned_cols=71 Identities=15% Similarity=-0.006 Sum_probs=50.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----C-------------------------------
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----Y------------------------------- 234 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~------------------------------- 234 (266)
.+..+|||||||+|.+...+++..- -+++++|+ |.+++.+++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3557999999999987766554432 26899998 666664432 0
Q ss_pred CCeE-EEEccCCCC--C-----CCccEEEecccccc
Q 042491 235 EGVS-HVGGDMLNA--V-----PNADAVFMKVIVLI 262 (266)
Q Consensus 235 ~ri~-~~~gd~~~~--~-----p~aD~~~l~~vLHd 262 (266)
.+|+ ++.+|+.+. + +.+|+|++..+||.
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~ 168 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC 168 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHH
Confidence 1244 889999883 2 24999999999985
No 232
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.62 E-value=3.6e-05 Score=64.98 Aligned_cols=65 Identities=14% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP 249 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p 249 (266)
.+++.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 20 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 20 QIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp HHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred HHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence 4455555 5566899999999999999999986 78999998 677776665 3689999999998 555
No 233
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.60 E-value=0.0001 Score=64.01 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------CCCeEEEEccCCCCC---C-CccEE
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------YEGVSHVGGDMLNAV---P-NADAV 254 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---p-~aD~~ 254 (266)
+.+++||-||||.|..++++++..|-.+++++|+ |+|++.+++ .+|++++.+|-++-+ + .+|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999999888889999998 888876543 689999999988742 2 39999
Q ss_pred Ee
Q 042491 255 FM 256 (266)
Q Consensus 255 ~l 256 (266)
++
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 234
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.57 E-value=6e-05 Score=64.21 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----CCCeEEEEccCCC-CCC
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----YEGVSHVGGDMLN-AVP 249 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~-~~p 249 (266)
...+++..+ .....+|||||||+|.+.. + ++.++.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 344555555 5566799999999999999 5 4555555999998 777776654 2589999999988 554
No 235
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.56 E-value=0.00012 Score=69.95 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=65.2
Q ss_pred CcchhcccCchHHHHHHHHHHhhhHHHHHHHHhhcccC--CCCCceEEEecCCchHHHHHHHH---H-CCCCeEEEeecH
Q 042491 152 EMWDFASQNSQFNNSFNKAMACTAKIVMSTLLSHYKDG--FDGIRSLVDVGGGTGEELAEIVE---F-YPHIKGVNFDLP 225 (266)
Q Consensus 152 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vvDvGgG~G~~~~~l~~---~-~P~l~~~~~Dlp 225 (266)
..||.+++|+-.-..|.+|+.. .+.+..... -.+...|+|||||+|-+....++ + .-++|+..++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4578888898877888887732 233322211 22446899999999988433333 2 223466777764
Q ss_pred HHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEe
Q 042491 226 HVVATAPV-------YEGVSHVGGDMLN-AVPN-ADAVFM 256 (266)
Q Consensus 226 ~v~~~a~~-------~~ri~~~~gd~~~-~~p~-aD~~~l 256 (266)
.++..+.+ .++|+++.||+.+ .+|+ +|+++.
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS 434 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS 434 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence 44444432 7899999999999 7886 999874
No 236
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.55 E-value=0.00011 Score=61.90 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCC----CCCCeEEEEccCCCC--CC----CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAP----VYEGVSHVGGDMLNA--VP----NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gd~~~~--~p----~aD~~~l~ 257 (266)
++...+|||+|||+|.+...+++.. |+=+++.+|. |++++.+. +..+|..+.+|...+ .| .+|++++-
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 5677999999999999999999985 8889999998 66665443 357899999988773 22 28887753
No 237
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.55 E-value=0.00014 Score=62.27 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=49.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC--CC------CeEEE--EccCCCCCC--CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV--YE------GVSHV--GGDMLNAVP--NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p--~aD~~~l~ 257 (266)
+....+|||||||+|.++..+++. -+++.+|+-.++..+.+ .. +|.++ .+|+.+ +| .+|+|++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMCD 147 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEEC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEEe
Confidence 456689999999999999999887 57999998555333221 11 68999 899987 33 49999986
Q ss_pred cc
Q 042491 258 VI 259 (266)
Q Consensus 258 ~v 259 (266)
..
T Consensus 148 ~~ 149 (265)
T 2oxt_A 148 VG 149 (265)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 238
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.54 E-value=0.00013 Score=62.90 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC--CC------CeEEE--EccCCCCCC--CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV--YE------GVSHV--GGDMLNAVP--NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p--~aD~~~l~ 257 (266)
+....+|||||||+|.++..+++. -+++.+|+..++..+.+ .. +|+++ .+|+.+ +| .+|+|++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd 155 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCD 155 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEEC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEEC
Confidence 456689999999999999999988 57999998555333322 11 78999 999887 33 49999986
Q ss_pred cc
Q 042491 258 VI 259 (266)
Q Consensus 258 ~v 259 (266)
..
T Consensus 156 ~~ 157 (276)
T 2wa2_A 156 IG 157 (276)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 239
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.52 E-value=7.6e-05 Score=65.52 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C-CC-CccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A-VP-NADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~-~p-~aD~~~l 256 (266)
.....+|||+|||+|..+..+++..+ ..+++.+|. +..++.+++ ..+|+++.+|+.+ + .+ .+|+|++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence 45667999999999999999999986 479999998 666665543 3579999999987 3 34 4999997
No 240
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.50 E-value=0.0001 Score=64.52 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=50.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-----HHHHhhCC--C--CCCeEEEEc-cCCC-CCCCccEEEecc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-----PHVVATAP--V--YEGVSHVGG-DMLN-AVPNADAVFMKV 258 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-----p~v~~~a~--~--~~ri~~~~g-d~~~-~~p~aD~~~l~~ 258 (266)
+....+|||||||+|.++..++++ -+++.+|. +..++..+ . .++|+++.+ |+.+ +...+|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 445689999999999999999988 36888898 53333222 1 267999999 9887 333599999854
Q ss_pred cc
Q 042491 259 IV 260 (266)
Q Consensus 259 vL 260 (266)
..
T Consensus 157 ~~ 158 (305)
T 2p41_A 157 GE 158 (305)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 241
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.49 E-value=0.00012 Score=65.02 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=56.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCC-----CeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEecc
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPH-----IKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNAVP--NADAVFMKV 258 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p--~aD~~~l~~ 258 (266)
...+|+|+|||+|.++..+.+..|. .+++++|+ |.+++.++. .-++.++.+|.+++.+ .+|+|+..-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999999875 68899998 666665543 3378999999998654 499999875
Q ss_pred cccc
Q 042491 259 IVLI 262 (266)
Q Consensus 259 vLHd 262 (266)
-++.
T Consensus 210 Pfg~ 213 (344)
T 2f8l_A 210 PVGY 213 (344)
T ss_dssp CCSE
T ss_pred CCCC
Confidence 5443
No 242
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=97.47 E-value=0.0004 Score=58.33 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=55.6
Q ss_pred HHHhhccc-CCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHH----hhCCCCCCeEEEEccCCCC-----C
Q 042491 181 TLLSHYKD-GFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVV----ATAPVYEGVSHVGGDMLNA-----V 248 (266)
Q Consensus 181 ~~~~~~~~-~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~----~~a~~~~ri~~~~gd~~~~-----~ 248 (266)
.++..++. .+....+|||+|||+|..+..+++.. |+-+++.+|. |.++ +.+++..+|.++.+|...+ +
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence 34444431 14567899999999999999998874 6789999998 5443 3333356899999998763 2
Q ss_pred C-CccEEEec
Q 042491 249 P-NADAVFMK 257 (266)
Q Consensus 249 p-~aD~~~l~ 257 (266)
+ .+|++++.
T Consensus 144 ~~~~D~I~~d 153 (232)
T 3id6_C 144 VENVDVLYVD 153 (232)
T ss_dssp CCCEEEEEEC
T ss_pred ccceEEEEec
Confidence 2 49999865
No 243
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.47 E-value=0.00011 Score=63.52 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVP--NADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~aD~~~l~ 257 (266)
....+|||+|||+|.++..+++. +..+++.+|+ |..++.+++ .++|+++.+|..+-.+ .||.|+|.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence 35689999999999999999887 4568999998 777766553 6889999999888333 39988875
No 244
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.42 E-value=0.00012 Score=62.87 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=54.2
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-CC-----C-CccEE
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-AV-----P-NADAV 254 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~~-----p-~aD~~ 254 (266)
.....+|||+|||+|..+..+++..++ .+++.+|. +..++.+++ ..+++++.+|+.+ +. + .+|+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 345679999999999999999999887 79999998 565655443 3589999999877 22 3 49999
Q ss_pred Eec
Q 042491 255 FMK 257 (266)
Q Consensus 255 ~l~ 257 (266)
++.
T Consensus 161 l~d 163 (274)
T 3ajd_A 161 LLD 163 (274)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
No 245
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.39 E-value=5e-05 Score=64.91 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-H-------HHHhhCCC-------CCCeEEEEccCCCC---CC----
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-P-------HVVATAPV-------YEGVSHVGGDMLNA---VP---- 249 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p-------~v~~~a~~-------~~ri~~~~gd~~~~---~p---- 249 (266)
...+|||+|||+|..+..+++. ..+++.+|+ | ..++.++. .+||+++.+|..+- ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 4479999999999999999986 468999998 5 55555542 36799999998772 43
Q ss_pred CccEEEeccc
Q 042491 250 NADAVFMKVI 259 (266)
Q Consensus 250 ~aD~~~l~~v 259 (266)
.+|+|++.-.
T Consensus 161 ~fD~V~~dP~ 170 (258)
T 2r6z_A 161 KPDIVYLDPM 170 (258)
T ss_dssp CCSEEEECCC
T ss_pred CccEEEECCC
Confidence 4999998543
No 246
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.37 E-value=0.00017 Score=63.87 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCCCCccEEEec
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAVPNADAVFMK 257 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~aD~~~l~ 257 (266)
....+|||+|||+|.++.. ++ +..+++.+|+ |.+++.+++ .++++++.+|.++....+|++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 3567999999999999999 76 5778999998 777776653 368999999999854459999884
No 247
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.35 E-value=8.8e-05 Score=65.70 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=50.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CC-CeEEEEccCCCCC------C-CccEEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YE-GVSHVGGDMLNAV------P-NADAVF 255 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~-ri~~~~gd~~~~~------p-~aD~~~ 255 (266)
...+|||+|||+|.++..+++... +++.+|+ +.+++.+++ .+ +++++.+|+++.. . .+|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 446999999999999999999754 8999998 777776653 23 6999999998732 2 499998
Q ss_pred e
Q 042491 256 M 256 (266)
Q Consensus 256 l 256 (266)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 8
No 248
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.34 E-value=0.00018 Score=55.90 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=43.4
Q ss_pred CCCceEEEecCCchH-HHHHHHHHCCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCCCCC----CccEEEecc
Q 042491 191 DGIRSLVDVGGGTGE-ELAEIVEFYPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLNAVP----NADAVFMKV 258 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p----~aD~~~l~~ 258 (266)
....++||||||.|. .+..|++. -+..++..|+ |..++ ++..|+|+|.+ +||+++..|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC
Confidence 355799999999995 77777654 4577888897 44333 88899999754 699987654
No 249
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.33 E-value=0.00032 Score=63.54 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCceEEEecCC------chHHHHHHHHH-CCCCeEEEeec-HHHHhhCCCCCCeEEEEccCCC-CCC--------CccEE
Q 042491 192 GIRSLVDVGGG------TGEELAEIVEF-YPHIKGVNFDL-PHVVATAPVYEGVSHVGGDMLN-AVP--------NADAV 254 (266)
Q Consensus 192 ~~~~vvDvGgG------~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gd~~~-~~p--------~aD~~ 254 (266)
+..+||||||| +|..+..++++ +|+.+++++|+ |.+. ...+||+++.+|+.+ +++ .||+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 45899999999 55556666655 69999999998 4432 235799999999988 443 39999
Q ss_pred EeccccccC
Q 042491 255 FMKVIVLIQ 263 (266)
Q Consensus 255 ~l~~vLHd~ 263 (266)
+.. ..|.|
T Consensus 293 isd-gsH~~ 300 (419)
T 3sso_A 293 IDD-GSHIN 300 (419)
T ss_dssp EEC-SCCCH
T ss_pred EEC-Ccccc
Confidence 875 45654
No 250
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.33 E-value=0.00016 Score=64.61 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----------C---CCeEEEEccCCCCC------C
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----------Y---EGVSHVGGDMLNAV------P 249 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~---~ri~~~~gd~~~~~------p 249 (266)
..+++|||||||+|..++++++..| .+++++|+ |.+++.+++ . +|++++.+|.++-+ +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3678999999999999999998866 78999998 777776543 1 28999999988722 2
Q ss_pred -CccEEEec
Q 042491 250 -NADAVFMK 257 (266)
Q Consensus 250 -~aD~~~l~ 257 (266)
.||+|++-
T Consensus 266 ~~fDvII~D 274 (364)
T 2qfm_A 266 REFDYVIND 274 (364)
T ss_dssp CCEEEEEEE
T ss_pred CCceEEEEC
Confidence 39999874
No 251
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.31 E-value=0.00043 Score=63.33 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=51.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCCC-CccEEEec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAVP-NADAVFMK 257 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~aD~~~l~ 257 (266)
+..+|+|+|||+|.++..+++. ..+++++|. +++++.+++ .+ ++++.+|+.+..+ .+|++++.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d 360 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD 360 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence 5579999999999999999987 458999998 777776654 23 9999999998555 59999873
No 252
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00036 Score=64.22 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CC-C-ccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VP-N-ADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p-~-aD~~~l 256 (266)
.....+|||+|||+|..+..+++..++ .+++.+|. +..++.+++ ..+|+++.+|+.+ + ++ + +|+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 445679999999999999999999987 79999998 555554432 3579999999987 3 55 4 999996
No 253
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.28 E-value=6.7e-05 Score=50.47 Aligned_cols=55 Identities=13% Similarity=0.293 Sum_probs=46.0
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
+..|+++|..++.++|..|||+.+|++... +.+++..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~t------v~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKT------LNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHH------HHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEecCC------CceEeeC
Confidence 456888887655689999999999999766 999999999999987755 4788764
No 254
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.13 E-value=0.00018 Score=64.94 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=50.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CC-CeEEEEccCCCCC------C-CccEEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YE-GVSHVGGDMLNAV------P-NADAVF 255 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~-ri~~~~gd~~~~~------p-~aD~~~ 255 (266)
+..+|||+|||+|.++..+++.. ..+++.+|+ |.+++.+++ .+ +++++.+|.++.+ + .+|+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 45799999999999999999863 237999998 777766553 23 8999999988732 2 489999
Q ss_pred e
Q 042491 256 M 256 (266)
Q Consensus 256 l 256 (266)
+
T Consensus 291 ~ 291 (385)
T 2b78_A 291 I 291 (385)
T ss_dssp E
T ss_pred E
Confidence 7
No 255
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.12 E-value=0.00064 Score=59.00 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHhhcccCCC-CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhh-CCCCCCeEEEE-ccCCC----CCC-C-
Q 042491 181 TLLSHYKDGFD-GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVAT-APVYEGVSHVG-GDMLN----AVP-N- 250 (266)
Q Consensus 181 ~~~~~~~~~~~-~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~-a~~~~ri~~~~-gd~~~----~~p-~- 250 (266)
.++..+. .. ...+|||||||+|.++..+++. +..+++.+|+ +.+++. ++..+|+.... .|+.. .+| .
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 3455554 33 4579999999999999988887 5568999998 555554 33356665544 34422 245 2
Q ss_pred ccEEEecccccc
Q 042491 251 ADAVFMKVIVLI 262 (266)
Q Consensus 251 aD~~~l~~vLHd 262 (266)
+|++.+...+|+
T Consensus 152 fD~v~~d~sf~s 163 (291)
T 3hp7_A 152 PSFASIDVSFIS 163 (291)
T ss_dssp CSEEEECCSSSC
T ss_pred CCEEEEEeeHhh
Confidence 899988776664
No 256
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.12 E-value=0.00053 Score=66.65 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=56.7
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH------------------------------------------CCCCe
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF------------------------------------------YPHIK 218 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~------------------------------------------~P~l~ 218 (266)
.++.... |.....|+|.+||+|+++++.+.. .|+.+
T Consensus 181 ~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 181 AIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 3444445 667789999999999999987764 24468
Q ss_pred EEEeec-HHHHhhCCC-------CCCeEEEEccCCC-CCC----CccEEEec
Q 042491 219 GVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-AVP----NADAVFMK 257 (266)
Q Consensus 219 ~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~~p----~aD~~~l~ 257 (266)
++++|. |.+++.++. .++|++..+|+.+ ..| .+|++++.
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 999998 777776654 4579999999987 223 48998874
No 257
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.08 E-value=0.00025 Score=52.63 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhc--CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhhcC
Q 042491 35 ELRLADIMHCHGSPITLPQLASGI--NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRD 110 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~--g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~~~ 110 (266)
+..|++.|..+ +++|+.+||+.+ |+++.. +.+.|+.|...|++...+ .+.|++|+.+..+...
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~a------Vs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSS------VSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHH------HHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHH------HHHHHHHHHHCCCEEecC------CceEEECchHHHHHHH
Confidence 45688888765 699999999999 888766 999999999999999876 4699999999754433
No 258
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.06 E-value=0.00031 Score=59.98 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=48.7
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHH-------HhhCC----C-C---CCeEEEEccCCC---CCC-CccE
Q 042491 194 RSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHV-------VATAP----V-Y---EGVSHVGGDMLN---AVP-NADA 253 (266)
Q Consensus 194 ~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v-------~~~a~----~-~---~ri~~~~gd~~~---~~p-~aD~ 253 (266)
.+|||+|||.|..+..+++. ..+++.+|. |.+ ++.++ . . +||+++.+|..+ .++ .+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 79999999999999999998 458999998 433 32221 1 1 589999999876 244 4999
Q ss_pred EEecccc
Q 042491 254 VFMKVIV 260 (266)
Q Consensus 254 ~~l~~vL 260 (266)
|++--..
T Consensus 168 V~lDP~y 174 (258)
T 2oyr_A 168 VYLDPMF 174 (258)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9985443
No 259
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.99 E-value=0.00041 Score=59.69 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=48.8
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+.|+++|...+.++|+.|||+++|++... +.|+|+-|+..|++.+++ .++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksT------v~RlL~tL~~~G~v~~~~------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSS------AHGLLAVMTELDLLARSA------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--C------HHHHHHHHHHTTSEEECT------TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEECC------CCcEEehHHH
Confidence 56888888765689999999999999988 999999999999999987 4799999854
No 260
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.99 E-value=0.00036 Score=63.48 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=50.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----C----CCeEEEEccCCCC---CC--CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----Y----EGVSHVGGDMLNA---VP--NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~----~ri~~~~gd~~~~---~p--~aD~~~l 256 (266)
...+|+|+|||+|..+..+++.. .+++.+|. |.+++.++. . ++|+++.+|+.+. .+ .+|+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 35899999999999999988874 58999998 666666543 1 5799999999883 22 4999987
No 261
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.99 E-value=0.00096 Score=47.73 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=52.1
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhch
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISK 105 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~ 105 (266)
.+|..-.++.|+..| . ++.|+.|||+.+|+++.. +.+.|+.|...|++.+.. +.|++|+.++
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~t------v~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQ------LDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 344455567788888 5 789999999999998766 999999999999999876 5999998764
No 262
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.97 E-value=0.00026 Score=64.04 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=51.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCCCC------C-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLNAV------P-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~------p-~aD~~~l 256 (266)
+..+|||+|||+|.++..+++. +..+++.+|+ |.+++.+++ .++++++.+|+++.. + .+|++++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999987 4558999998 777766553 238999999988731 2 4999998
No 263
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.96 E-value=0.00094 Score=64.30 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=63.3
Q ss_pred CcchhcccCchHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCceEEEecCCchHHHHHHHHH----C---------CCCe
Q 042491 152 EMWDFASQNSQFNNSFNKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF----Y---------PHIK 218 (266)
Q Consensus 152 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~----~---------P~l~ 218 (266)
..|+.+.+|+-+-..|.+++... +.+..+. -.+...|+|||||+|-+....+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 45778888888888888887543 2222221 124578999999999996432222 2 2347
Q ss_pred EEEeec-HHHHhhCC-----C-CCCeEEEEccCCC-CC------CC-ccEEEe
Q 042491 219 GVNFDL-PHVVATAP-----V-YEGVSHVGGDMLN-AV------PN-ADAVFM 256 (266)
Q Consensus 219 ~~~~Dl-p~v~~~a~-----~-~~ri~~~~gd~~~-~~------p~-aD~~~l 256 (266)
+..+|- |.++...+ . .++|+++.||+.+ .+ |+ +|+++.
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS 501 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS 501 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEE
Confidence 778886 33332222 1 6899999999998 56 55 999874
No 264
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.94 E-value=0.00079 Score=60.28 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN 246 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~ 246 (266)
..+|+|+|||+|.++..+++.. -+++.+|. |++++.+++ .++++++.+|..+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 3689999999999999988754 47899998 777776653 3689999999876
No 265
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.94 E-value=0.0017 Score=49.41 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=60.1
Q ss_pred chHHhhHHHHHHHHHHHhHHHHHHHH-----HHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhc
Q 042491 6 VREDVLRGQAQVWQLMFAFADSMALK-----SAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVR 80 (266)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~-----~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~ 80 (266)
.++++......+...+........-. ...++.|+..|... +++|..+||+.+++++.. +.++++-|..
T Consensus 5 ~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~L~~ 77 (142)
T 3ech_A 5 VNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKAL------ITRKIRELEG 77 (142)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC---CH------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHH------HHHHHHHHHH
Confidence 34455555555555554333332222 24567788888875 689999999999999887 9999999999
Q ss_pred cCcccccccCCCCCCceEeCchhchhhh
Q 042491 81 KGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 81 ~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.|++.+....++...-.+.+|+.++.+.
T Consensus 78 ~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 78 RNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp TTSEEC----------CCEECHHHHHHH
T ss_pred CCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 9999987621111123478999887544
No 266
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.94 E-value=0.00079 Score=61.82 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=52.4
Q ss_pred CCCceEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-HHHHhhCCC------C--CCeEEEEccCCCC-
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEFY-------------PHIKGVNFDL-PHVVATAPV------Y--EGVSHVGGDMLNA- 247 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~- 247 (266)
....+|+|+|||+|.++..+.+.. +..+++++|+ |.++..++. . .++.++.+|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 345699999999999999988764 5578999998 666665442 2 2788999999983
Q ss_pred CC-CccEEEeccc
Q 042491 248 VP-NADAVFMKVI 259 (266)
Q Consensus 248 ~p-~aD~~~l~~v 259 (266)
.+ .+|+|+..--
T Consensus 250 ~~~~fD~Iv~NPP 262 (445)
T 2okc_A 250 PSTLVDVILANPP 262 (445)
T ss_dssp CSSCEEEEEECCC
T ss_pred ccCCcCEEEECCC
Confidence 33 5999987643
No 267
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.92 E-value=0.0013 Score=60.07 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCC---CC--CccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNA---VP--NADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p--~aD~~~l 256 (266)
.....+|||+|||+|..+..+++..|+.+++.+|. +..++.+++ .-+++++.+|+.+. ++ .+|+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 321 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 321 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence 34567999999999999999999999989999998 444444332 23589999999873 44 3999996
No 268
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.88 E-value=0.0014 Score=56.42 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-C--C----
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-A--V---- 248 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~--~---- 248 (266)
...+++.+. ......+||.+||.|.++..|+++ +.+++++|. |.+++.+++ .+|++++.+||-+ + +
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 345666665 556689999999999999999998 779999998 667654432 2699999999976 2 2
Q ss_pred -CCccEEEe
Q 042491 249 -PNADAVFM 256 (266)
Q Consensus 249 -p~aD~~~l 256 (266)
..+|.+++
T Consensus 87 ~~~vDgIL~ 95 (285)
T 1wg8_A 87 VERVDGILA 95 (285)
T ss_dssp CSCEEEEEE
T ss_pred CCCcCEEEe
Confidence 24888876
No 269
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.85 E-value=0.00036 Score=62.77 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCCC------C-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNAV------P-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~------p-~aD~~~l 256 (266)
+..+|||+|||+|.++..+++. ..+++++|. |..++.+++ .++++++.+|.++.. + .+|++++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5579999999999999999998 568999998 777776653 245999999988731 3 4999998
No 270
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.82 E-value=0.00039 Score=62.83 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC------C-C-CeEEEEccCCCCC------C-CccEEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV------Y-E-GVSHVGGDMLNAV------P-NADAVF 255 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~-ri~~~~gd~~~~~------p-~aD~~~ 255 (266)
+..+|||+|||+|.++..+++.. ..+++.+|+ |..++.+++ . + +++++.+|.++.. + .+|+++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999875 458999998 677766553 2 3 8999999988732 2 499998
Q ss_pred ec
Q 042491 256 MK 257 (266)
Q Consensus 256 l~ 257 (266)
+.
T Consensus 299 ~d 300 (396)
T 3c0k_A 299 MD 300 (396)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 271
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.77 E-value=0.0006 Score=47.28 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=49.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCC-CCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCP-DVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKW 106 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~-~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~ 106 (266)
+-.|.+.|... ++.|+.+||+.+|+... . +.+.|..|...|++...+. |...|++|+.++.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~a------Vr~hL~~Le~eGlV~~~~~----gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLTKARD------INAVLIDMERQGDVYRQGT----TPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGGGHHH------HHHHHHHHHHTTSEEEECS----SSCEEEECHHHHT
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCCcHHH------HHHHHHHHHHCCCEEecCC----CCCCeEeCHhHHh
Confidence 44566777775 79999999999999986 6 9999999999999986652 3458999998753
No 272
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.63 E-value=0.0014 Score=60.65 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=52.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CCC-ccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VPN-ADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p~-aD~~~l 256 (266)
.....+|||+|||+|..+..+++..++ .+++.+|+ +..++.+++ .. |+++.+|..+ + .++ +|+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 345679999999999999999999876 68999998 666665543 34 9999999876 2 344 999996
No 273
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.60 E-value=0.0034 Score=58.28 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CCC-ccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VPN-ADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p~-aD~~~l 256 (266)
...+|||+|||+|..+..+++..+ ..+++.+|+ +..++.+++ ..+|+++.+|..+ + .++ +|+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 557999999999999999999976 478999998 666655543 3579999999987 2 444 999997
No 274
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=96.59 E-value=0.0018 Score=58.63 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=47.5
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-----CCCeEEEEccCCCC---CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-----YEGVSHVGGDMLNA---VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p-~aD~~~l 256 (266)
...+|||+|||+|.++..+++... +++.+|+ |.+++.+++ .-..++..+|.++. .+ .+|+|++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 368999999999999999999744 4899998 667766553 11235668998873 23 3999987
No 275
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.55 E-value=0.0016 Score=47.03 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=49.7
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
.+|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++..... .....|++|+.
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~t------vs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPT------LSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTH------HHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 34444456667777865 789999999999999887 9999999999999987652 01235777763
No 276
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.46 E-value=0.0013 Score=45.88 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=47.5
Q ss_pred HhcChhhHhhhCC--CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHG--SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g--~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.+..|++.|..++ .++|+.|||+++|++... +.+.|.-|...|++...+. .++.|.+.+....+.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~t------V~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKE------INRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEESS----SSCEEEEC-------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEecCC----CCCeeEEeCcHHhcc
Confidence 3556778887652 379999999999999776 9999999999999988763 257898888665444
No 277
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=96.46 E-value=0.0034 Score=54.37 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCCceEEEecC------CchHHHHHHHHHCC-CCeEEEeecHHHHhhCCCCCCeEE-EEccCCC-CCCC-ccEEEec
Q 042491 190 FDGIRSLVDVGG------GTGEELAEIVEFYP-HIKGVNFDLPHVVATAPVYEGVSH-VGGDMLN-AVPN-ADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGg------G~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~~~ri~~-~~gd~~~-~~p~-aD~~~l~ 257 (266)
+....+|||+|| |+|. ..+++..| +.+++.+|+.+.+ +++++ +.+|+.+ ++++ +|+|+..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEc
Confidence 456679999999 4477 45567777 6899999985441 47899 9999988 4554 9999974
No 278
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.44 E-value=0.0067 Score=52.97 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC------CCCeEEEEccCCCC---C---CCccEEE
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV------YEGVSHVGGDMLNA---V---PNADAVF 255 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~---p~aD~~~ 255 (266)
.....+|||+|||+|..+..+++.. +.-+++.+|+ +..++.+++ ..+|+++.+|+.+- . ..+|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 3456799999999999999999985 5678999998 555555443 36799999998762 2 2489998
Q ss_pred e
Q 042491 256 M 256 (266)
Q Consensus 256 l 256 (266)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 279
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.41 E-value=0.0018 Score=58.28 Aligned_cols=64 Identities=9% Similarity=-0.098 Sum_probs=50.5
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC----C-----------------CCeEEEEccCCCC---
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV----Y-----------------EGVSHVGGDMLNA--- 247 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~-----------------~ri~~~~gd~~~~--- 247 (266)
..+|||+|||+|..+..++++.|..+++..|+ |+.++.+++ . ++++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 46999999999999999999999889999998 666554432 1 2388999998762
Q ss_pred CC-CccEEEe
Q 042491 248 VP-NADAVFM 256 (266)
Q Consensus 248 ~p-~aD~~~l 256 (266)
.+ .+|+|++
T Consensus 128 ~~~~fD~I~l 137 (378)
T 2dul_A 128 RHRYFHFIDL 137 (378)
T ss_dssp STTCEEEEEE
T ss_pred ccCCCCEEEe
Confidence 33 4899885
No 280
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.41 E-value=0.0053 Score=51.28 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=30.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhh
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVAT 230 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~ 230 (266)
...+|||||||+|.++..+++. +..+++++|+ +.+++.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~ 75 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAW 75 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCH
T ss_pred CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHH
Confidence 4569999999999999999988 3348999998 555544
No 281
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.40 E-value=0.0019 Score=59.54 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=52.6
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC------CCCeEEEEccCCC-C--CCC-ccEEEe
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV------YEGVSHVGGDMLN-A--VPN-ADAVFM 256 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~-~--~p~-aD~~~l 256 (266)
.....+|||+|||+|..+..+++..++ .+++.+|+ +..++.+++ ..+|.++.+|..+ + .++ +|+|++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence 345679999999999999999998765 68999998 556655443 4579999999876 2 444 999987
No 282
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.38 E-value=0.0018 Score=62.90 Aligned_cols=64 Identities=13% Similarity=0.028 Sum_probs=50.3
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC-------C-CCeEEEEccCCCC---CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV-------Y-EGVSHVGGDMLNA---VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~---~p-~aD~~~l 256 (266)
...+|||+|||+|.++..+++... .+++.+|+ +.+++.+++ . ++++++.+|.++. .+ .||+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 347999999999999999988543 46999998 666665553 2 5899999999883 23 3999997
No 283
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.38 E-value=0.00058 Score=58.25 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=49.3
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+.|+++|...++++|..|||+++|++... +.|+|+-|+..|++.++.. .++|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT------~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKAT------VYRLMSELQEAGFVEQVEG-----ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHH------HHHHHHHHHHTTSEEECSS-----SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEcCC-----CCcEEcCHHH
Confidence 45778887644789999999999999766 9999999999999999873 3899999854
No 284
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.34 E-value=0.0042 Score=55.51 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCCCCCeEEEEccCCCCCC---CccEEEeccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVP---NADAVFMKVI 259 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p---~aD~~~l~~v 259 (266)
+....++||+|++.|.+...++++ +.+++.+|.-++-......++|+++.+|.++..| .+|++++=.+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 456789999999999999999988 5799999974443333346899999999999433 3898876443
No 285
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.31 E-value=0.002 Score=47.13 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=48.0
Q ss_pred hhhHhhhCCCCCCHHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 38 LADIMHCHGSPITLPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
|+..|.. ++.+..||++.+ |+++.. +.+.|+-|...|++.+....++...-.|.+|+.++.+.
T Consensus 19 IL~~L~~--~~~~~~eLa~~l~~is~~t------ls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 19 ILXHLTH--GKKRTSELKRLMPNITQKM------LTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHTT--CCBCHHHHHHHCTTSCHHH------HHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHh--CCCCHHHHHHHhcCCCHHH------HHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 4445553 789999999999 999776 99999999999999987632111224699999886544
No 286
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.30 E-value=0.0015 Score=55.18 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=48.3
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+.|++.|...++++|..|||+.+|++... +.|+|+.|...|++.+.. .++|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~st------v~r~l~~L~~~G~v~~~~------~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSN------AYKYMVVLEEKGFVLRKK------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEECT------TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEEECC------CCcEEECHHH
Confidence 45777887654589999999999998766 999999999999999884 4899998854
No 287
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=96.29 E-value=0.0017 Score=51.23 Aligned_cols=58 Identities=5% Similarity=-0.089 Sum_probs=44.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-CC---C-C-ccEEEecccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-AV---P-N-ADAVFMKVIV 260 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~~---p-~-aD~~~l~~vL 260 (266)
.....+|+|||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + + +|+|++..+|
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 45678999999996 23676 667776654 3469999999987 44 4 3 9999999999
Q ss_pred ccC
Q 042491 261 LIQ 263 (266)
Q Consensus 261 Hd~ 263 (266)
|..
T Consensus 74 ~~~ 76 (176)
T 2ld4_A 74 GST 76 (176)
T ss_dssp TCC
T ss_pred hhc
Confidence 987
No 288
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.29 E-value=0.0011 Score=45.83 Aligned_cols=58 Identities=16% Similarity=0.339 Sum_probs=47.2
Q ss_pred hcChhhHhhhCC--CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 35 ELRLADIMHCHG--SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 35 elglfd~L~~~g--~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
+..|++.|...+ +++|+.|||+++|++... +.+.|.-|...|++...+. .++.|.+++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~t------V~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKE------INRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHH------HHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 566778887752 379999999999999766 9999999999999988762 257787765
No 289
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.28 E-value=0.011 Score=52.21 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=59.4
Q ss_pred HHHHhhcccCCCCCceEEEecCCchHHHHHHHHHC-CCCeEEEeec-HHHHhhCCC--CCCeEEEEccCCC-C-------
Q 042491 180 STLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-PHIKGVNFDL-PHVVATAPV--YEGVSHVGGDMLN-A------- 247 (266)
Q Consensus 180 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~-~------- 247 (266)
..+++.+. ......+||..+|.|..+..|+++. |+.+++++|. |++++.++. .+|++++.++|-+ .
T Consensus 47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence 45666665 5566899999999999999999985 8899999998 777776644 5799999999876 1
Q ss_pred CC-CccEEEe
Q 042491 248 VP-NADAVFM 256 (266)
Q Consensus 248 ~p-~aD~~~l 256 (266)
++ .+|.+++
T Consensus 125 ~~~~vDgILf 134 (347)
T 3tka_A 125 LIGKIDGILL 134 (347)
T ss_dssp CTTCEEEEEE
T ss_pred CCCcccEEEE
Confidence 22 3777765
No 290
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.26 E-value=0.0013 Score=55.27 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=49.5
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchh
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKW 106 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~ 106 (266)
+.|++.|...++++|..|||+.+|++... +.|+|+.|...|++.+... .++|++++....
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~st------v~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRST------VQRIINALEEEFLVEALGP-----AGGFRLGPALGQ 68 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHH------HHHHHHHHHTTTSEEECGG-----GCEEEECSHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHH
Confidence 45777787644589999999999998766 9999999999999999762 378999986543
No 291
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.24 E-value=0.0012 Score=48.56 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhch
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISK 105 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~ 105 (266)
.-.++.|+..|.. ++.|..|||+.+|+++.. +.+.|+.|...|++...... ....|++|+.+.
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~ela~~l~is~~t------v~~~l~~L~~~gli~~~~~g---r~~~y~l~~~~~ 82 (114)
T 2oqg_A 20 DETRWEILTELGR--ADQSASSLATRLPVSRQA------IAKHLNALQACGLVESVKVG---REIRYRALGAEL 82 (114)
T ss_dssp CHHHHHHHHHHHH--SCBCHHHHHHHSSSCHHH------HHHHHHHHHHTTSEEEEEET---TEEEEEECSHHH
T ss_pred ChHHHHHHHHHHc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeeEEecC---CEEEEEechHHH
Confidence 3445677777854 789999999999998766 99999999999999876510 013488888663
No 292
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.23 E-value=0.0016 Score=55.29 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=49.9
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+.|+++|...++++|..|||+.+|++... +.|+|+.|...|++.+++ ++|++++....|.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~st------v~r~l~~L~~~G~v~~~~-------~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPA------VRRILLTLQKLGYVAGSG-------GRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeCC-------CEEEEcHHHHHHH
Confidence 45677776544689999999999998766 999999999999999875 8999999764444
No 293
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.23 E-value=0.01 Score=44.72 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=53.1
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... ++.|..+||+.+++++.. +.+.++-|...|++......++...-.|.+|+.++.+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~~~------vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDRAA------VTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345578888764 689999999999998766 99999999999999887632111234689999987655
No 294
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.22 E-value=0.0014 Score=46.70 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhch
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISK 105 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~ 105 (266)
.++..-.++.|+..|... ++.|..|||+.+|+++.. +.+.|+.|...|++......++.....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~~t------vs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGN------LDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455556677788888643 689999999999999776 99999999999999864311111134689999875
No 295
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.21 E-value=0.0011 Score=47.45 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=50.6
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
.+|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++..... ...-.|++++.
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~t------vs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQLSQSA------LSQHLAWLRRDGLVTTRKE---AQTVYYTLKSE 82 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEECC---TTCCEEEECCH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEe---CCEEEEEECHH
Confidence 34445556778888886 799999999999998766 9999999999999987762 01235777764
No 296
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.21 E-value=0.0016 Score=48.80 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 26 DSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 26 ~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
...+|.--.++.|+..|... ++.|+.|||+.+|+++.. +.+.|+.|...|++...... ....|++++..
T Consensus 35 ~~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~st------vs~~L~~L~~~Glv~~~~~g---r~~~y~l~~~~ 103 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQD-EELCVCDIANILGVTIAN------ASHHLRTLYKQGVVNFRKEG---KLALYSLGDEH 103 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred HHHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEEC---CEEEEEECHHH
Confidence 34455555677899999753 789999999999999776 99999999999999876520 12358887743
No 297
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.11 E-value=0.0031 Score=48.10 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCcccccccCC
Q 042491 13 GQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSD 91 (266)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~ 91 (266)
+....++++.+-|...+|. .|.. ++.++.||++.+ |+++.. |.+.|+-|...|++.+....+
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~--g~~rf~eL~~~l~gIs~~~------Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID--GKKRFNEFRRICPSITQRM------LTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT--SCBCHHHHHHHCTTSCHHH------HHHHHHHHHHTTSEEEEEECS
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc--CCcCHHHHHHHhcccCHHH------HHHHHHHHHHCCCEEEEecCC
Confidence 3455555555555554443 3343 789999999999 998776 999999999999999876321
Q ss_pred CCCCceEeCchhchhhh
Q 042491 92 GSEETMYGLTQISKWLL 108 (266)
Q Consensus 92 ~~g~~~y~lt~~s~~l~ 108 (266)
....-.|++|+.++.|.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 11224699999998765
No 298
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.09 E-value=0.0015 Score=48.71 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=52.5
Q ss_pred HHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 27 SMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 27 ~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
.++|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++...... ..-.|++++.+
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~t------vs~hL~~L~~~GlV~~~~~g---r~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPS------FMKHIHFLEDSGWIRTHKQG---RVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHH------HHHHHHHHHHTTSEEEEEET---TEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHH------HHHHHHHHHHCCCeEEEecC---CEEEEEECHHH
Confidence 345555667888888885 799999999999999776 99999999999999876520 12358888754
No 299
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.07 E-value=0.0061 Score=45.77 Aligned_cols=67 Identities=12% Similarity=0.269 Sum_probs=51.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... ++.|..+||+.+++++.. +.+.++-|...|++.......+...-.|.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~~~~t------vs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGCVPSN------MTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSSCCTT------HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCChhH------HHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 45577778764 689999999999999988 99999999999999886421111223488999887544
No 300
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.05 E-value=0.0017 Score=46.25 Aligned_cols=66 Identities=11% Similarity=0.207 Sum_probs=50.5
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
++..-.++.|+..|.. +++.|..|||+.+|+++.. +.+.|+.|...|++..... .....|++|+.+
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~t------vs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASA------TSQHLARMRDEGLIDSQRD---AQRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHH------HHHHHHHHHHTTSEEEEEC---SSCEEEEECCHH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEec---CCEEEEEEChHH
Confidence 3444556778888876 3689999999999998766 9999999999999987761 012357787754
No 301
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.00 E-value=0.0038 Score=47.66 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=49.6
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDKAA------VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 456677888775 689999999999998776 99999999999999987522111234688999886544
No 302
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.00 E-value=0.0017 Score=55.49 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=47.6
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+.|+++|...++++|..|||+.+|++... +.|+|+.|...|++.+++ ++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~st------v~r~l~tL~~~G~v~~~~-------~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRAT------ARRFLLTLVELGYVATDG-------SAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHH------HHHHHHHHHHHTSEEESS-------SEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEecC-------CEEEEcHHH
Confidence 45677776534689999999999998766 999999999999999875 899998854
No 303
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.00 E-value=0.0025 Score=47.03 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCC--HHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCccccccc
Q 042491 13 GQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPIT--LPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRS 89 (266)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t--~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~ 89 (266)
+...+++++.+.+...+| ..|.. ++.+ +.||++.+ |+++.. +.+.|+.|...|++.+...
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~--g~~~~~~~eL~~~l~gis~~~------ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN--GSTRQNFNDIRSSIPGISSTI------LSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS--SSSCBCHHHHHHTSTTCCHHH------HHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc--CCCCCCHHHHHHHccCCCHHH------HHHHHHHHHHCCCEEEeec
Confidence 334455555555554444 34553 6777 99999999 999776 9999999999999998741
Q ss_pred CCCCCCceEeCchhchhhh
Q 042491 90 SDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 90 ~~~~g~~~y~lt~~s~~l~ 108 (266)
....|++|+.++.+.
T Consensus 79 ----r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 ----QITTYALTEKGMNVR 93 (111)
T ss_dssp ----SSEEEEECHHHHHHH
T ss_pred ----CcEEEEECccHHHHH
Confidence 125799999987655
No 304
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.99 E-value=0.012 Score=44.52 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|. . +++|..+||+.+++++.. +.++++-|...|++.+.....+...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~s~~t------vs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFVTQSA------ITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCCCchh------HHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 3455777787 3 799999999999998766 99999999999999986521111223588999886544
No 305
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=95.99 E-value=0.034 Score=49.84 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCceEEEecCCchHHHHHH--------HHHC-------CCCeEEEeecHHH-----HhhCCC--------------C-C-
Q 042491 192 GIRSLVDVGGGTGEELAEI--------VEFY-------PHIKGVNFDLPHV-----VATAPV--------------Y-E- 235 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l--------~~~~-------P~l~~~~~Dlp~v-----~~~a~~--------------~-~- 235 (266)
+.-+|+|+|||+|.....+ .+++ |++++..-|+|.- -..... . +
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3579999999999888765 3444 8889999899642 111111 0 1
Q ss_pred -CeEEEEccCCC-CCCC--ccEEEeccccccCC
Q 042491 236 -GVSHVGGDMLN-AVPN--ADAVFMKVIVLIQD 264 (266)
Q Consensus 236 -ri~~~~gd~~~-~~p~--aD~~~l~~vLHd~~ 264 (266)
=+..++|.|.. .+|. +|+++.+..||--+
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls 164 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS 164 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeec
Confidence 14668899998 5784 99999999999654
No 306
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0066 Score=46.13 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=50.9
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|... ++ |..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQSA------ITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCChhH------HHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 456788888874 45 999999999999776 99999999999999987621000112589999887544
No 307
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=95.98 E-value=0.0037 Score=56.04 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC--------------CCCeEEEEccCCCCC-------C
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV--------------YEGVSHVGGDMLNAV-------P 249 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~~ri~~~~gd~~~~~-------p 249 (266)
.+++||=||||.|..++++++. |.-+++++|+ |.|++.+++ .+|++++.+|-++-+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999985 5578999998 888776542 367999999976521 2
Q ss_pred CccEEEe
Q 042491 250 NADAVFM 256 (266)
Q Consensus 250 ~aD~~~l 256 (266)
.||+|++
T Consensus 284 ~yDvIIv 290 (381)
T 3c6k_A 284 EFDYVIN 290 (381)
T ss_dssp CEEEEEE
T ss_pred ceeEEEE
Confidence 4899886
No 308
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.98 E-value=0.0021 Score=54.66 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=47.4
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+.|++.|...++++|+.|||+.+|++... +.|+|+.|...|++.+.. .++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kst------v~r~l~tL~~~G~v~~~~------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTT------VVRLVATMCARSVLTSRA------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHH------HHHHHHHHHHTTSEEECT------TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEECC------CCeEEecHHH
Confidence 45677776433689999999999998766 999999999999999986 2499998854
No 309
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.96 E-value=0.0023 Score=57.84 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=51.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCC-CeEEEeec-HHHHhhCCC-------CCC-eEEEEccCCCC----CC-CccEEEe
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPH-IKGVNFDL-PHVVATAPV-------YEG-VSHVGGDMLNA----VP-NADAVFM 256 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-------~~r-i~~~~gd~~~~----~p-~aD~~~l 256 (266)
+..+|||++||+|.++..++++.++ -+++..|. |..++.+++ .++ ++++.+|.++- .+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998776 47889998 777766553 345 99999997652 23 3999987
No 310
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.95 E-value=0.0042 Score=44.53 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=46.9
Q ss_pred hhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 38 LADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
|...|.. + ++..+||..+|++++. +.+.++.|...|++.... +.|.+|+.++.+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~ls~~~------~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANLSYAL------TGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCcCHHH------HHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHH
Confidence 3444543 4 9999999999999887 999999999999999987 6799999997544
No 311
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.91 E-value=0.0034 Score=46.23 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=48.0
Q ss_pred hhhHhhhCCCCCCHHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 38 LADIMHCHGSPITLPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
|+..|.. ++.+..|||+.+ ++++.. +.+.|+-|...|++.+....++...-.|.+|+.++.+.
T Consensus 27 IL~~L~~--~~~~~~eLa~~l~~is~~t------vs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ--GTKRNGELMRALDGITQRV------LTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH--SCBCHHHHHHHSTTCCHHH------HHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHhccCCHHH------HHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 4445554 689999999999 998766 99999999999999987632111223599999987544
No 312
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.91 E-value=0.0073 Score=47.02 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=52.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFIKPQS------ANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCGGG------HHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 45577888775 689999999999999877 99999999999999987632111233589999887554
No 313
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.91 E-value=0.002 Score=47.95 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=49.1
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
++|.--.++.|+..|.. ++.++.|||+.+|+++.. +.+.|+.|...|++...... ..-.|++|+.
T Consensus 16 ~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~st------vs~~L~~L~~~GlV~~~~~g---r~~~y~l~~~ 80 (118)
T 2jsc_A 16 RALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSN------VSNHLSCLRGCGLVVATYEG---RQVRYALADS 80 (118)
T ss_dssp HHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHH------HHHHHHHHTTTTSEEEEECS---SSEEEEESSH
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCceEEEEEC---CEEEEEEChH
Confidence 34444456677777875 689999999999998776 99999999999999876510 1135788764
No 314
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.91 E-value=0.016 Score=44.47 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=50.1
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i~~~t------vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLMEQSR------MTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45577778764 689999999999998766 99999999999999876521111223588999887544
No 315
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.89 E-value=0.002 Score=46.98 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=47.7
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
+|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++...... ....|++++.
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~is~st------vs~~L~~L~~~Glv~~~~~g---r~~~y~l~~~ 85 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSN------VSHQLKLLKSVHLVKAKRQG---QSMIYSLDDI 85 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEET---TEEEEEESSH
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEeC---CEEEEEEChH
Confidence 3334455667777775 789999999999998766 99999999999999876620 0124777664
No 316
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.88 E-value=0.038 Score=42.21 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=50.5
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccc--cccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAA--HRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~--~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... +++|..+||+.+++++.. +.++++-|...|++.+ .....+...-.+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLIITGSS------AAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45677788765 689999999999998766 9999999999999998 4321111223688999887544
No 317
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.85 E-value=0.038 Score=42.53 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=49.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|...++++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~~t------vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTNGN------VSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCCSC------HHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCChhh------HHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 455788884224789999999999999988 99999999999999986521111123488999886544
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.83 E-value=0.0024 Score=44.26 Aligned_cols=48 Identities=10% Similarity=0.302 Sum_probs=40.6
Q ss_pred hcChhhHhhhCC-CCCCHHHHHhhc-----CCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHG-SPITLPQLASGI-----NSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g-~~~t~~eLA~~~-----g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|++.|...+ ++.|++||++.+ +++... +.|.|+.|...|++.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~T------VyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLAT------VYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHH------HHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhh------HHHHHHHHHHCCCeEEEe
Confidence 456888887654 689999999999 777555 999999999999999876
No 319
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.83 E-value=0.017 Score=45.21 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=51.5
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~is~~t------vs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGVQPSA------TGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 45677788764 689999999999998766 99999999999999886522111223588999887544
No 320
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.82 E-value=0.01 Score=45.40 Aligned_cols=69 Identities=7% Similarity=0.104 Sum_probs=48.5
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|...++++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~t------vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQ------IVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHH------HHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhH------HHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 3556777776544678999999999998766 99999999999999986521111122388999887554
No 321
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.78 E-value=0.0012 Score=48.41 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=46.1
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
.-.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++...... ....|++++.
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~st------vs~~L~~L~~~GlV~~~~~g---r~~~y~l~~~ 84 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTT------ASANLQALKSGGLVEARREG---TRQYYRIAGE 84 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHH------HHHHHHHHHHHTSEEEEEET---TEEEEEESCH
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEeC---CEEEEEEChH
Confidence 3345566777775 789999999999999776 99999999999999876520 0124777664
No 322
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.77 E-value=0.0031 Score=49.21 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 26 DSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 26 ~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
..++|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++...... ..-.|++|+.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~st------vs~hL~~L~~aGlV~~~~~G---r~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSA------ISQHLRVLTEAGLVTPRKDG---RFRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHH------HHHHHHHHHHTTSEEEEEET---TEEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEecC---CEEEEEEChHH
Confidence 4566777778899999985 799999999999998766 99999999999999876620 01358888865
No 323
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.76 E-value=0.0066 Score=46.17 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=52.5
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPKQT------VSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 356677888665 679999999999998766 99999999999999986522111234589999887544
No 324
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.75 E-value=0.015 Score=44.06 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=51.6
Q ss_pred HHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 33 AVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 33 a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
..++.|+..|...++++|..+||+.+|+++.. +.++++-|...|++.+.....+...-.+.+|+.++.+.
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~------vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSN------LAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhh------HHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 34567788887622789999999999998766 99999999999999887521111223588999886544
No 325
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.75 E-value=0.029 Score=42.76 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=51.4
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~~~------vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKRQY------ISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 45577778764 689999999999998766 99999999999999987522111233688999886544
No 326
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.71 E-value=0.0069 Score=46.87 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=45.4
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.+..||++.+|+++.. +.+.|+-|...|++.+....++. .-.|++|+.++.+.
T Consensus 36 g~~~~~eLa~~lgis~~t------ls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNI------LAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCCCHHH------HHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 689999999999998766 99999999999999987632222 34799999986544
No 327
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.70 E-value=0.0051 Score=46.78 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=54.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCcccccccCCC
Q 042491 14 QAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDG 92 (266)
Q Consensus 14 ~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~ 92 (266)
...+++++.+-+... |+..|.. ++.+..||++.+ |+++.. +.+.|+.|...|++.+....++
T Consensus 25 ~~~~l~~l~~~w~l~---------IL~~L~~--g~~~~~eLa~~l~gis~~t------ls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 25 SREVLKHVTSRWGVL---------ILVALRD--GTHRFSDLRRXMGGVSEXM------LAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp HHHHHHHHHSHHHHH---------HHHHGGG--CCEEHHHHHHHSTTCCHHH------HHHHHHHHHHHTCEEEEEECSS
T ss_pred HHHHHHHHcCCcHHH---------HHHHHHc--CCCCHHHHHHHhccCCHHH------HHHHHHHHHHCCcEEEEecCCC
Confidence 344555554444443 3344443 789999999999 798776 9999999999999998763211
Q ss_pred CCCceEeCchhchhhh
Q 042491 93 SEETMYGLTQISKWLL 108 (266)
Q Consensus 93 ~g~~~y~lt~~s~~l~ 108 (266)
...-.|++|+.++.+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 1123699999987654
No 328
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.67 E-value=0.0041 Score=45.35 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhc-CCCCCCCCchhhHHHHHHHHhccCcccccccCC
Q 042491 13 GQAQVWQLMFAFADSMALKSAVELRLADIMHCHGSPITLPQLASGI-NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSD 91 (266)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~-g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~ 91 (266)
+...+++++.+-+...+ +..|.. ++.+..||++.+ |+++.. +.+.|+.|...|++.+....+
T Consensus 14 ~~~~~l~~l~~~~~~~I---------L~~L~~--~~~~~~eL~~~l~gis~~~------ls~~L~~Le~~GlV~r~~~~~ 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLI---------IFQINR--RIIRYGELKRAIPGISEKM------LIDELKFLCGKGLIKKKQYPE 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHH---------HHHHTT--SCEEHHHHHHHSTTCCHHH------HHHHHHHHHHTTSEEEEEECS
T ss_pred CHHHHHHHHcCccHHHH---------HHHHHh--CCcCHHHHHHHcccCCHHH------HHHHHHHHHHCCCEEEeecCC
Confidence 34445555544444433 334543 789999999999 598766 999999999999999876321
Q ss_pred CCCCceEeCchhchhhh
Q 042491 92 GSEETMYGLTQISKWLL 108 (266)
Q Consensus 92 ~~g~~~y~lt~~s~~l~ 108 (266)
+...-.|.+|+.++.+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 11224699999986544
No 329
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.67 E-value=0.0048 Score=42.91 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=47.9
Q ss_pred HHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 33 AVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 33 a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
.....|.+.|... ++|+.|||+++|++... +.+.|.-|...|++...+.+ +-.|+++...
T Consensus 17 ~~~~~IL~lL~~~--g~sa~eLAk~LgiSk~a------Vr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE--GATAAQLTRQLNMEKRE------VNKALYDLQRSAMVYSSDDI----PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS--TEEHHHHHHHSSSCHHH------HHHHHHHHHHHTSSEECSSS----SCEEESCC--
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeCCCC----CCcceeccCc
Confidence 3445677888863 39999999999999877 99999999999999988732 5678887643
No 330
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.64 E-value=0.0061 Score=46.44 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=44.2
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|..+||+.+|+++.. +.+.++.|...|++.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~vs~~t------vs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSS------VTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 689999999999999776 999999999999999876 37899999886544
No 331
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.63 E-value=0.0086 Score=45.76 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=44.0
Q ss_pred hcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|...+ +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~------vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRGAS------ITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------C------HHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCChhH------HHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 345677776643 689999999999999988 99999999999999987522111223578898887544
No 332
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.59 E-value=0.027 Score=43.03 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=50.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... ++.|..+||+.+++++.. +.++++-|...|++.+....++...-.|.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~~t------vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKPSA------VTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 34477777764 689999999999998766 99999999999999987521111123588899886544
No 333
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.58 E-value=0.0052 Score=46.39 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=52.2
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.++..|...+ +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~t------vs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPT------VSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCccc------HHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 3455777777653 589999999999998766 99999999999999987522111234588999887554
No 334
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.0047 Score=52.16 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=51.8
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..|||+.+|+++.. +.|.|+-|...|++.+.+. ...|++|+.++.+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsksT------v~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDKSEKT------LINKIAELKKFGILTQKGK-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHH
Confidence 345567777554 689999999999999766 9999999999999998752 47899999987554
No 335
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.55 E-value=0.011 Score=44.68 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=52.3
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.+.++-|...|++......++...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~t------vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELALDTGT------VSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTCCTTT------HHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhh------HHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 355677788764 689999999999999888 99999999999999887622111223588899886544
No 336
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.54 E-value=0.031 Score=42.44 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=50.3
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... +++|..+||+.+++++.. +.++++-|...|++......++...-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYLACST------TTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCchh------HHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 34577777764 689999999999998766 99999999999999986521111223588999887544
No 337
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.54 E-value=0.0044 Score=47.09 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=51.6
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~------vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPT------VNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhh------HHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 345577777764 789999999999998766 99999999999999986522111234688999887544
No 338
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.53 E-value=0.0034 Score=43.22 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=38.8
Q ss_pred hhhHhhhC-----CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 38 LADIMHCH-----GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 38 lfd~L~~~-----g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
|++.|... |+|.|+.|||+.+|+++.. +.+-|..|...|++....
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~T------Vrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQ------VRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCcEEecC
Confidence 56666654 6899999999999997655 999999999999999875
No 339
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.47 E-value=0.05 Score=41.48 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=47.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc-cCCCC-CCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR-SSDGS-EETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~-~~~~~-g~~~y~lt~~s~~l~ 108 (266)
++.++..| .. +++|..|||+.+++++.. +.++++-|...|++.+.. .+..| ..-.+.+|+.++.+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~~~~~------vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGVNKAA------VSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCSCSSH------HHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 34478888 43 799999999999999888 999999999999999731 11111 123478888886544
No 340
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=95.46 E-value=0.026 Score=50.72 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=50.8
Q ss_pred CceEEEecCCchHHHHHHHHH-----------------CCCCeEEEeecH-----------H-HHhhC-----CCCCC--
Q 042491 193 IRSLVDVGGGTGEELAEIVEF-----------------YPHIKGVNFDLP-----------H-VVATA-----PVYEG-- 236 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~-----------------~P~l~~~~~Dlp-----------~-v~~~a-----~~~~r-- 236 (266)
.-+|+|+||++|.....++.. .|+++++.-|+| . ..+.. ...+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 679999999999998877776 588888889997 1 11111 11112
Q ss_pred eEEEEccCCC-CCCC--ccEEEecccccc
Q 042491 237 VSHVGGDMLN-AVPN--ADAVFMKVIVLI 262 (266)
Q Consensus 237 i~~~~gd~~~-~~p~--aD~~~l~~vLHd 262 (266)
+.-++|.|+. -+|. .|+++.+..||=
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW 161 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHW 161 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred EEecchhhhhccCCCCceEEEEecceeee
Confidence 4557788998 4884 999999999994
No 341
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.45 E-value=0.0084 Score=45.16 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=50.6
Q ss_pred hcChhhHhhhCCC-CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGS-PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~-~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|...++ ++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~~t------vs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKSST------ATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCcch------HHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 4456777776532 89999999999998766 99999999999999887522111223588899886544
No 342
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.43 E-value=0.025 Score=43.82 Aligned_cols=67 Identities=25% Similarity=0.197 Sum_probs=51.5
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~~~------vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQST------TSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 45577778765 689999999999998766 99999999999999987632212234689999887544
No 343
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.39 E-value=0.0062 Score=47.88 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=49.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|...++++|..|||+.++++... +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~~~t------vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIEQPS------LVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHhh------HHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 455777777644679999999999998766 99999999999999987632111234688999887554
No 344
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.38 E-value=0.007 Score=45.50 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=50.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... ++.|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~~t------vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDLGA------LTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCChHH------HHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 45567777654 689999999999998766 99999999999999986521111223588999887544
No 345
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.35 E-value=0.0038 Score=47.44 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=49.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFLDSGT------LTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCChhh------HHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 34566777654 789999999999998766 99999999999999987532111234689999987644
No 346
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.32 E-value=0.0081 Score=42.84 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=49.9
Q ss_pred hcChhhHhhhCCCCCCHHHH----HhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQL----ASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eL----A~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... ++.|..+| |+.+++++.. +.++++-|...|++.+.... ....|.+|+.++.+.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~t------vs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTAT------FYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHH------HHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHH------HHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHH
Confidence 34566677654 68999999 9999998766 99999999999999886410 134689999887554
No 347
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.31 E-value=0.0065 Score=45.76 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 46 GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 46 g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
+++.|..|||+.+|+++.. +.++|+.|...|++..... ..|.|.++.
T Consensus 24 ~~~~s~~ela~~~~i~~~~------v~~il~~L~~~Glv~~~~g----~~ggy~L~~ 70 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHY------LEQLVSPLRNAGLVKSIRG----AYGGYVLGS 70 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHH------HHHHHHHHHHTTSEEEC--------CCEEESS
T ss_pred CCcCCHHHHHHHHCcCHHH------HHHHHHHHHHCCceEecCC----CCCceEeCC
Confidence 3789999999999999766 9999999999999987641 036788765
No 348
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.28 E-value=0.01 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred hcChhhHh-hhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIM-HCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L-~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..| .. +++.|..+||+.+++++.. +.++++-|...|++......++...-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~s~~~------vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGVEGPT------LARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCCChhh------HHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 34577777 54 3789999999999998776 99999999999999987522111233588888876544
No 349
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.27 E-value=0.02 Score=43.74 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=49.4
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~------vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNT------LTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHH------HHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 345677788764 789999999999998766 99999999999999987522111234588999887544
No 350
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.24 E-value=0.0049 Score=46.42 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=50.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++......++...-.|.+|+.++.+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~~~~t------vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAMDAAT------IKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTCCHHH------HHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 56688888764 689999999999998766 99999999999999986421000112488999886544
No 351
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.18 E-value=0.0086 Score=46.39 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=48.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~is~~t------vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAMDKVA------VSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45577888764 789999999999998766 99999999999999886521111124588888886544
No 352
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.16 E-value=0.0091 Score=45.33 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=47.9
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... + +|..|||+.+|+++.. +.++++-|...|++.+....++...-.|.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~~t------vs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQAA------VTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCHHH------HHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 456677888773 4 9999999999999776 99999999999999886521111234588888886544
No 353
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.14 E-value=0.01 Score=44.98 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 46 GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 46 g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+++.|..+||+.+++++.. +.+.++.|...|++.+.. ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~is~~t------v~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSS------VFEEVSHLEEKGLVKKKE-------DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHH------HHHHHHHHHHCCCEEecC-------CeEEEChhHHHHH
Confidence 4789999999999998766 999999999999999876 6899999886543
No 354
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.14 E-value=0.015 Score=44.99 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=51.0
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++-.|...+++.+..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~t------vs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPS------LVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHH------HHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 344566666545678889999999999776 99999999999999977632212234588999987554
No 355
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.13 E-value=0.011 Score=45.57 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=51.9
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.|.+|+.++.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~t------vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTKSN------VTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCHHH------HHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 456678888764 689999999999998766 99999999999999886521111223588999887544
No 356
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=95.13 E-value=0.033 Score=54.62 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCC---CeEEEeec-HHHHhhC--C------C----CCCeEEEEccCCCC----CC
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPH---IKGVNFDL-PHVVATA--P------V----YEGVSHVGGDMLNA----VP 249 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~---l~~~~~Dl-p~v~~~a--~------~----~~ri~~~~gd~~~~----~p 249 (266)
+....+|+|.|||+|.++.+++++.++ .++.++|+ |.+++.+ + . .+...+...|++.+ .+
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 345679999999999999999998873 57899998 5555444 1 0 12245666777762 22
Q ss_pred CccEEEec
Q 042491 250 NADAVFMK 257 (266)
Q Consensus 250 ~aD~~~l~ 257 (266)
.+|+|+..
T Consensus 399 kFDVVIgN 406 (878)
T 3s1s_A 399 NVSVVVMN 406 (878)
T ss_dssp TEEEEEEC
T ss_pred CCCEEEEC
Confidence 49998863
No 357
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.11 E-value=0.047 Score=45.68 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCC----C--CCCeEEEEc-cCCC-CCCCcc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAP----V--YEGVSHVGG-DMLN-AVPNAD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~----~--~~ri~~~~g-d~~~-~~p~aD 252 (266)
.+.+.+- +....+|||+||+.|.+..-.+....-.++..+|+-..-..-+ . -+-|+|+.+ |++. +--.+|
T Consensus 69 ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D 146 (267)
T 3p8z_A 69 WFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD 146 (267)
T ss_dssp HHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence 4455553 6666799999999999999887777666888999833211111 1 367999999 9776 222389
Q ss_pred EEEe
Q 042491 253 AVFM 256 (266)
Q Consensus 253 ~~~l 256 (266)
++++
T Consensus 147 tllc 150 (267)
T 3p8z_A 147 TLLC 150 (267)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 358
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.09 E-value=0.0073 Score=45.25 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCC-ceEeCchh
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEE-TMYGLTQI 103 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~-~~y~lt~~ 103 (266)
+|.--.++.|+..|.. ++.++.|||+.+|+++.. +.+.|+.|...|++..... |. -.|++++.
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~st------vs~~L~~Le~~Glv~~~~~----gr~~~y~l~~~ 105 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESA------VSHQLRSLRNLRLVSYRKQ----GRHVYYQLQDH 105 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEE----TTEEEEEESSH
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEe----CCEEEEEEChH
Confidence 3334456778888875 689999999999999776 9999999999999987652 11 24777664
No 359
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.07 E-value=0.0089 Score=46.35 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=51.7
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.|.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~t------vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVVEQST------LSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCChhH------HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345678888764 689999999999998766 99999999999999986521111233588999886544
No 360
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.04 E-value=0.01 Score=44.97 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=50.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... +++|..+||+.+++++.. +.++++-|...|++.......+...-.+.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~~~------vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDRTT------AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCHhH------HHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34477777764 689999999999998766 99999999999999987522111223488999886544
No 361
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.99 E-value=0.0095 Score=45.71 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=50.7
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhhc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLR 109 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~~ 109 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~s~~t------vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYLDSAT------LTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCCCccc------HHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45577778764 689999999999998766 999999999999999865211111235889998876553
No 362
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.96 E-value=0.0087 Score=46.37 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=50.2
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+.++..|... +++|..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKIDKGT------TARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 4467777664 789999999999998766 99999999999999987522111223588999887544
No 363
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=94.94 E-value=0.029 Score=52.73 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=48.1
Q ss_pred CCceEEEecCCchHHHHHHHHHCC------------------CCeEEEeec-HHHHhhCCC------CC-----CeEEEE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP------------------HIKGVNFDL-PHVVATAPV------YE-----GVSHVG 241 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P------------------~l~~~~~Dl-p~v~~~a~~------~~-----ri~~~~ 241 (266)
...+|+|.+||+|.++..+.+... ..++.++|+ |.++..++. .+ ++.++.
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 456999999999999988876532 247899998 665554432 22 378899
Q ss_pred ccCCC-C---CCCccEEEec
Q 042491 242 GDMLN-A---VPNADAVFMK 257 (266)
Q Consensus 242 gd~~~-~---~p~aD~~~l~ 257 (266)
+|.+. + .+.+|+|+..
T Consensus 249 gDtL~~~~~~~~~fD~Vv~N 268 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATN 268 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEEC
T ss_pred CCCcccccccccCCeEEEEC
Confidence 99987 2 2359999874
No 364
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.92 E-value=0.0079 Score=45.14 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=49.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... ++.|..|||+.+++++.. +.++++-|...|++.......+...-.|.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~~t------vs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDKGT------IARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 45567777764 789999999999998766 99999999999999986421000112378888886544
No 365
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.92 E-value=0.011 Score=40.84 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=39.0
Q ss_pred hhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccc
Q 042491 38 LADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAH 87 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~ 87 (266)
|.+.|... +.+++.|||+.+++++.. ++|-|..|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~~T------IRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQPM------INAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCHHH------HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEe
Confidence 66778775 789999999999999876 99999999999999988
No 366
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.86 E-value=0.0095 Score=41.04 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=38.5
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAH 87 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~ 87 (266)
..|++.|... +++|..|||+.+|+++.. +.+.|+.|...|++...
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~~t------v~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAVTDYQ------ARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTSCHHH------HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEe
Confidence 3467777764 689999999999998766 99999999999999854
No 367
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.85 E-value=0.068 Score=47.47 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=41.1
Q ss_pred CceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC---CCCCeEEEEccCCC
Q 042491 193 IRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP---VYEGVSHVGGDMLN 246 (266)
Q Consensus 193 ~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~~~ri~~~~gd~~~ 246 (266)
...|||||.|.|.+...|+++...-++++++. +..++..+ ..+|++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999999754457888877 22222222 35799999999976
No 368
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.82 E-value=0.0089 Score=45.44 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=52.4
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhhc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLR 109 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~~ 109 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++......++...-.+.+|+.++.+..
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~~~~t------vs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYLDSGT------LTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTCCHHH------HHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCcCc------HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345577777764 689999999999998766 999999999999999875221112335889999875553
No 369
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.80 E-value=0.05 Score=43.50 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHhcChhhHhhhC-CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhhc
Q 042491 33 AVELRLADIMHCH-GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLR 109 (266)
Q Consensus 33 a~elglfd~L~~~-g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~~ 109 (266)
..++.|+..|... ++++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+..
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~t------vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSKQN------INRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3456677778752 2689999999999998766 999999999999999876322122346899999875543
No 370
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.79 E-value=0.01 Score=41.79 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=39.5
Q ss_pred hhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 38 LADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
|.+.|... +.+++.|||+.+++++.. ++|-|..|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~~T------IRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQPL------IDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCHHH------HHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEe
Confidence 66778775 799999999999999876 999999999999999984
No 371
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.78 E-value=0.018 Score=43.06 Aligned_cols=68 Identities=10% Similarity=0.223 Sum_probs=50.9
Q ss_pred hcChhhHhhhC-CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCH-GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~-g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.++..|... ++++|..|||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQ------VVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHH------HHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 34566667653 2679999999999998766 99999999999999986522212234588999987544
No 372
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.78 E-value=0.0077 Score=45.64 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=51.0
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++......++...-.|.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~s~~t------vs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGVAKST------VTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCchh------HHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 356677777764 689999999999998766 99999999999999986521000112488999887544
No 373
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.71 E-value=0.0078 Score=43.12 Aligned_cols=48 Identities=10% Similarity=0.285 Sum_probs=40.6
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++.|+..|... ++.|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~~t------v~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSARF------VRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEEe
Confidence 355567777653 689999999999998766 999999999999999875
No 374
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=94.70 E-value=0.015 Score=54.67 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=46.4
Q ss_pred ceEEEecCCchHHHHHHHHHCC---------------CCeEEEeec-HHHHhhCCC-------CCCeEEEEccCCC-C-C
Q 042491 194 RSLVDVGGGTGEELAEIVEFYP---------------HIKGVNFDL-PHVVATAPV-------YEGVSHVGGDMLN-A-V 248 (266)
Q Consensus 194 ~~vvDvGgG~G~~~~~l~~~~P---------------~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~-~-~ 248 (266)
.+|+|.+||+|.++.++.+..+ +.++.++|+ |.++..++. ..+|.+..||.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999998866543 567899998 666555442 2345558899887 3 3
Q ss_pred C--CccEEEec
Q 042491 249 P--NADAVFMK 257 (266)
Q Consensus 249 p--~aD~~~l~ 257 (266)
+ .+|+|+..
T Consensus 326 ~~~~fD~Iv~N 336 (544)
T 3khk_A 326 PDLRADFVMTN 336 (544)
T ss_dssp TTCCEEEEEEC
T ss_pred ccccccEEEEC
Confidence 3 39999874
No 375
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.69 E-value=0.0096 Score=40.50 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=47.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
+-.|++.|.++|+|++..|||+.+|++... +.+.+..|-..|.+.-.. .-.|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKe------VdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRE------LNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHH------HHHHHHHHHHcCCccCCC------CceeeCC
Confidence 556888999988999999999999999877 999999999999988776 3567665
No 376
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=94.65 E-value=0.055 Score=47.69 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCCC---------------------------CCCeEEEEccC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPV---------------------------YEGVSHVGGDM 244 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---------------------------~~ri~~~~gd~ 244 (266)
+...||.+|||-.+..-.+...+|+++++=+|+|++++..++ .+++.+++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999999999999999999999875332 27899999999
Q ss_pred CC-CC----------CC-ccEEEeccccccCC
Q 042491 245 LN-AV----------PN-ADAVFMKVIVLIQD 264 (266)
Q Consensus 245 ~~-~~----------p~-aD~~~l~~vLHd~~ 264 (266)
.+ ++ |+ ..+++.--+|++.+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~ 208 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMH 208 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC
Confidence 88 23 12 34666656665543
No 377
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.62 E-value=0.012 Score=44.14 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=40.9
Q ss_pred hcChhhHhhhCCCC-CCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSP-ITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~-~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|+..|...+++ +|+.|||+.++++... +.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sT------V~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVST------VQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeeC
Confidence 55677888765556 9999999999998766 999999999999998864
No 378
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.61 E-value=0.034 Score=43.40 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=49.2
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|...| +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~t------vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPD------ITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTH------HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhh------HHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 3455777777652 689999999999999887 99999999999999987521100112588999887554
No 379
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.53 E-value=0.0073 Score=45.52 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=51.0
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++.|+..|... +++|..+||+.+++++.. +.++++-|...|++......++...-.|.+|+.++.+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~~~------vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACILRPS------MTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHhH------HHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 356677788764 689999999999998766 99999999999999886421000112488999887544
No 380
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.44 E-value=0.012 Score=46.71 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=49.7
Q ss_pred hcChhhHhhhCCCC--CCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSP--ITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~--~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|...+.+ +|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~t------vs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISGPS------TSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGG------GSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHH------HHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45577888765433 9999999999999887 99999999999999987521111123588898886544
No 381
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.40 E-value=0.015 Score=45.06 Aligned_cols=59 Identities=22% Similarity=0.177 Sum_probs=43.6
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
+|++.+.+... . +++.|.++||+.+++++.. +.+++..|...|++.... |.|.|.++.-
T Consensus 16 Al~~L~~La~~---~--~~~~~~~~iA~~~~i~~~~------l~kil~~L~~~Glv~s~r-----G~GGy~L~~~ 74 (149)
T 1ylf_A 16 AVHILSILKNN---P--SSLCTSDYMAESVNTNPVV------IRKIMSYLKQAGFVYVNR-----GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHS---C--GGGCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred HHHHHHHHHhC---C--CCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEEEcc-----CCCceEeCCC
Confidence 45555544331 2 3689999999999999765 999999999999998765 2477877663
No 382
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=94.36 E-value=0.029 Score=52.72 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCceEEEecCCchHHHHHHHHHC---CCCeEEEeec-HHHHhhCCC--------CCCeEEEEccCCCC-CC-----CccE
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFY---PHIKGVNFDL-PHVVATAPV--------YEGVSHVGGDMLNA-VP-----NADA 253 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~-~p-----~aD~ 253 (266)
...+|+|.+||+|.++..+.+.. +..++.++|+ |.++..++. .+++.+..+|.+.. +| .+|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45699999999999999999885 3578999998 555554432 25688999999873 33 3999
Q ss_pred EEec
Q 042491 254 VFMK 257 (266)
Q Consensus 254 ~~l~ 257 (266)
|+..
T Consensus 301 IvaN 304 (542)
T 3lkd_A 301 VLMN 304 (542)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9864
No 383
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.25 E-value=0.052 Score=43.47 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=52.6
Q ss_pred HHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcC-CCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchh
Q 042491 27 SMALKSAVELRLADIMHCHGSPITLPQLASGIN-SSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQI 103 (266)
Q Consensus 27 ~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g-~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~ 103 (266)
.++|.--.++.|+..|.. ++.|+.+||+.++ ++... +.+.|+.|...|+++...+.-..| ...|++++.
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~~~------~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDVATTT------LYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTBCHHH------HHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCCCHHH------HHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 345555677888899976 7999999999996 87655 999999999999998655210001 235887776
Q ss_pred chhh
Q 042491 104 SKWL 107 (266)
Q Consensus 104 s~~l 107 (266)
+..+
T Consensus 89 ~~~~ 92 (182)
T 4g6q_A 89 AGDA 92 (182)
T ss_dssp TTTS
T ss_pred cccC
Confidence 5433
No 384
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.23 E-value=0.029 Score=40.16 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 46 GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 46 g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
|++.+..+||+.++++... |.|.|.-|...|++..... +|+.+...+|+.++.+.
T Consensus 34 g~~~s~~eLa~~l~l~~st------LsR~l~rLe~~GLV~r~~~--~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQLPMSV------LRRVLTQLQAAGLADVSVE--ADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEEC--TTSCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCCchhh------HHHHHHHHHHCCCEEeecC--CCCceeEEECHHHHHHH
Confidence 3689999999999999777 9999999999999998653 45556689999887543
No 385
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.01 E-value=0.037 Score=42.68 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=46.2
Q ss_pred hhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 39 ADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 39 fd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
...|.. +++.|..+||+.+|+++.. +.+.++.|...|++.... ...+.+|+.+..+.
T Consensus 46 ~~~l~~-~~~~~~~~la~~l~vs~~t------vs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIRE-VGEARQVDMAARLGVSQPT------VAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHH-HSCCCHHHHHHHHTSCHHH------HHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred HHHHHh-CCCcCHHHHHHHhCcCHHH------HHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 335554 3679999999999998766 999999999999998875 36788999886544
No 386
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.01 E-value=0.017 Score=40.94 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=40.2
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++|..+||+.+++++.. +.++++-|...|++.... + .....|++|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i~~~t------vs~~l~~Le~~Glv~~~~-d--~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSY------VWLIIKKFEEAKMVECEL-E--GRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSCHHH------HHHHHHHHHHTTSEEEEE-E--TTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHH------HHHHHHHHHHCcCccCCC-C--CCeEEEEEChhHHHHH
Confidence 49999999999998766 999999999999993222 0 0112599999987554
No 387
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=93.99 E-value=0.022 Score=40.39 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=45.6
Q ss_pred hcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 35 ELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 35 elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++.|+..|..+| .+++..|||++++++... +.++|+.|...|++.+.....++..-.|.+.+
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~t------vt~iLk~LE~kglIkr~~~~~~~~rKvy~Ly~ 84 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNLPLTE------INKILKNLESKKLIKAVKSVAASKKKVYMLYN 84 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEECCSSCSSCCEEEESS
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEecCCCCCCcEEEEEec
Confidence 345777777643 479999999999999776 99999999999999965532222233455544
No 388
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.83 E-value=0.019 Score=42.28 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=43.5
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+|....++.|+..|.. ++.|..+||+.+|+++.. +.+.|+.|...|++....
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~is~st------vsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSA------VSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHH------HHHHHHHHHHHCSEEEEE
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEe
Confidence 3344556778888886 689999999999998776 999999999999998765
No 389
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.81 E-value=0.015 Score=41.62 Aligned_cols=65 Identities=12% Similarity=0.254 Sum_probs=45.8
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
+|.--.++.|+..|... ++.|+.|||+.+|+++.. +.+.|+.|... ++...... ..-.|++++..
T Consensus 23 aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~is~st------vs~hL~~L~~~-lv~~~~~g---r~~~y~l~~~~ 87 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH-KALNVTQIIQILKLPQST------VSQHLCKMRGK-VLKRNRQG---LEIYYSINNPK 87 (99)
T ss_dssp HHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHH------HHHHHHHHBTT-TBEEEEET---TEEEEECCCHH
T ss_pred HhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHH------HHHHHHHHHHH-hhhheEeC---cEEEEEEChHH
Confidence 34444556677444332 789999999999999876 99999999999 88765510 01247777643
No 390
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.58 E-value=0.039 Score=45.35 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 46 GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 46 g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+++++..+||+.+++++.. +.+.++-|...|++.+.. ...+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~t------vs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPA------VTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhH------HHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 4789999999999999776 999999999999999987 47899999987544
No 391
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=93.55 E-value=0.065 Score=45.33 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHH--CCCCeEE--EeecHHHHhhCCCCCCe---EEEEc-cCCCCCC-Cc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEF--YPHIKGV--NFDLPHVVATAPVYEGV---SHVGG-DMLNAVP-NA 251 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~--~P~l~~~--~~Dlp~v~~~a~~~~ri---~~~~g-d~~~~~p-~a 251 (266)
++-+.+ .+....+|||+||+.|.++.-.++. ...+++. ..|+ +..+.......+ +++.| ||++.-| .+
T Consensus 64 EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 64 WLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 344443 3677899999999999999998886 3222343 3353 111111111455 55557 9998433 49
Q ss_pred cEEEe
Q 042491 252 DAVFM 256 (266)
Q Consensus 252 D~~~l 256 (266)
|+|++
T Consensus 141 DvVLS 145 (269)
T 2px2_A 141 DTLLC 145 (269)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 99875
No 392
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=93.48 E-value=0.096 Score=46.60 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=50.0
Q ss_pred CCCceEEEecCCchHHHHHHHHH----------------CCCCeEEEeecHH-----HHhhCCC---CCC---eEEEEcc
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEF----------------YPHIKGVNFDLPH-----VVATAPV---YEG---VSHVGGD 243 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~----------------~P~l~~~~~Dlp~-----v~~~a~~---~~r---i~~~~gd 243 (266)
++.-+|+|+||++|.....++.. .|++.+..-|+|. +-..... ..+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999665443332 5778888889963 2222221 112 4667899
Q ss_pred CCC-CCCC--ccEEEecccccc
Q 042491 244 MLN-AVPN--ADAVFMKVIVLI 262 (266)
Q Consensus 244 ~~~-~~p~--aD~~~l~~vLHd 262 (266)
|+. .+|. .|+++.+..||=
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHW 151 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMW 151 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTB
T ss_pred hhhccCCCCceEEEEehhhhhh
Confidence 998 5884 999999999994
No 393
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=93.40 E-value=0.2 Score=42.81 Aligned_cols=71 Identities=10% Similarity=-0.064 Sum_probs=41.9
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhh-CCC----CCCeEEEEccCCC-CCC--CccEEEecccc
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVAT-APV----YEGVSHVGGDMLN-AVP--NADAVFMKVIV 260 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~-a~~----~~ri~~~~gd~~~-~~p--~aD~~~l~~vL 260 (266)
+....+|||+|||.|.+...+++..|-.+++.+|+-.-... ... ...+..+..++-. +++ .+|+++.-...
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence 55667999999999999999888876555544544211110 011 1133334454322 344 39999875443
No 394
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.30 E-value=0.17 Score=37.35 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=52.4
Q ss_pred HHHHHhcChhhHhhhCCCCCCHHHHHhhcC--------CCC-CCCCchhhHHHHHHHHhccCcccccccC-CCCCCceEe
Q 042491 30 LKSAVELRLADIMHCHGSPITLPQLASGIN--------SSC-PDVHIIPSLTRIMRMLVRKGVFAAHRSS-DGSEETMYG 99 (266)
Q Consensus 30 L~~a~elglfd~L~~~g~~~t~~eLA~~~g--------~~~-~~~~~~~~l~rlLr~L~~~gil~~~~~~-~~~g~~~y~ 99 (266)
+....++-|+..|.. +|.+.-||++.+. +++ .. +.+.|+-|...|++...... +++..-.|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~t------ly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGN------IYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCC------HHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcch------HHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 344456667777876 7999999999883 677 77 99999999999999876532 111234699
Q ss_pred Cchhchhhh
Q 042491 100 LTQISKWLL 108 (266)
Q Consensus 100 lt~~s~~l~ 108 (266)
+|+.++.+.
T Consensus 82 LT~~G~~~l 90 (118)
T 2esh_A 82 ITPQGKLYL 90 (118)
T ss_dssp ECHHHHHHH
T ss_pred EChHHHHHH
Confidence 999997433
No 395
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.23 E-value=0.036 Score=42.63 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=36.7
Q ss_pred CHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 50 TLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 50 t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
|.++||+.+++++.- +.++|..|...|++.... |.|.|+++.-
T Consensus 25 s~~~IA~~~~i~~~~------l~kIl~~L~~aGlv~s~r-----G~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNTNPVV------VRRMISLLKKADILTSRA-----GVPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTSCHHH------HHHHHHHHHHTTSEECCS-----SSSSCEESSC
T ss_pred CHHHHHHHHCcCHHH------HHHHHHHHHHCCceEeec-----CCCCceecCC
Confidence 999999999999765 999999999999998776 2467777653
No 396
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=93.19 E-value=0.084 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 46 GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 46 g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
++++|.++||+.+++++.. +.+++..|...|++.-... ..|.|+++.-
T Consensus 26 ~~~~s~~~IA~~~~is~~~------l~kil~~L~~aGlv~s~rG----~~GGy~Lar~ 73 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVM------IRNILSVLHKHGYLTGTVG----KNGGYQLDLA 73 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGG------THHHHHHHHHTTSSEEECS----TTCEEECCSC
T ss_pred CCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeecC----CCCCeEecCC
Confidence 3689999999999999877 9999999999999977652 1357888763
No 397
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=93.15 E-value=0.1 Score=44.97 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=48.8
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhh----CCC--CCCeEEEEc-cCCC-CCCCcc
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVAT----APV--YEGVSHVGG-DMLN-AVPNAD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~--~~ri~~~~g-d~~~-~~p~aD 252 (266)
.+.+.+. +....+|||+||++|.+..-.+....-.++..+|+-..-.. .+. -.-|.++.+ |++. +-..+|
T Consensus 85 ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D 162 (321)
T 3lkz_A 85 WLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCD 162 (321)
T ss_dssp HHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCC
Confidence 3444443 55667999999999999997777766667889998322110 011 133888888 8766 222388
Q ss_pred EEEe
Q 042491 253 AVFM 256 (266)
Q Consensus 253 ~~~l 256 (266)
++++
T Consensus 163 ~ivc 166 (321)
T 3lkz_A 163 TLLC 166 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 398
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.09 E-value=0.028 Score=45.93 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=50.3
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|... +++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i~~st------vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVMHVST------AFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTCCHHH------HHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 35567777664 689999999999998766 99999999999999987621111223688999987544
No 399
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.02 E-value=0.051 Score=38.81 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=48.0
Q ss_pred hcChhhHhhhCCCCCCHHHHHh-hcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLAS-GINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~-~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+-.|... ++.|..+||+ .++++... +.|=++.|...|++...+ ++ +.+|+.++.+.
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~drst------vsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDLGNAV------VNSNIGVLIKKGLVEKSG------DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTSCHHH------HHHHHHHHHTTTSEEEET------TE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcccHHH------HHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHH
Confidence 34566677775 5999999999 99998655 999999999999999333 34 99999987544
No 400
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.92 E-value=0.026 Score=43.31 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=48.0
Q ss_pred ChhhHhhhC-CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 37 RLADIMHCH-GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 37 glfd~L~~~-g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
.++-.|... ++++|..+||+.+++++.. +.++++-|...|++.+....++...-.+.+|+.++.+.
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~~~~t------vs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMVHPTS------VTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHH------HHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 345555322 2679999999999999766 99999999999999987632111223588999887554
No 401
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=92.91 E-value=0.05 Score=42.68 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=39.0
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++.|.++||+.+++++.- +.++|..|...|++.-... ..|.|.++.
T Consensus 43 ~~~s~~eIA~~~~i~~~~------l~kil~~L~~aGlv~s~rG----~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHY------LEQLIGPLRNAGIVKSIRG----AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEECS----TTCEEEECS
T ss_pred CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCeEEEecC----CCCceEecC
Confidence 689999999999999765 9999999999999997762 136788755
No 402
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.85 E-value=0.069 Score=41.05 Aligned_cols=66 Identities=5% Similarity=0.089 Sum_probs=46.0
Q ss_pred HHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 33 AVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 33 a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
..+.-|++.|...+++.|++||.+.+.-.- .......+.|.|+.|+..|++.+.... +|..+|.++
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~~ 87 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLVKELTYG--DASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSEEEECCT--TSCCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCEEEEeeC--CCceEEECC
Confidence 344568888876557999999999993210 011245699999999999999987731 234567654
No 403
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.82 E-value=0.051 Score=40.89 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=37.1
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchhc
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQIS 104 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~s 104 (266)
..|..+||+++|+++.. +.+.++.|...|++......+++| ...|.++|+-
T Consensus 51 ~ps~~~LA~~l~~s~~~------V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~ 103 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAE------CMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLW 103 (128)
T ss_dssp SCCHHHHHHTSSSCHHH------HHHHHHHHHHTTSSEECC----------CEECHHHH
T ss_pred CCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHH
Confidence 47999999999999877 999999999999999876322222 2356666644
No 404
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=92.70 E-value=0.083 Score=37.18 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=45.6
Q ss_pred hhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhh-HHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 38 LADIMHCHGSPITLPQLASGINSSCPDVHIIPS-LTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~-l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++..|...+.+.|..|||+.+++++ .. +.++++-|...|++..+..+ ...-.+.+|+.++.+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~------~t~vs~~l~~Le~~Glv~~~~~d--rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSE------KTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCH------HHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCc------hHHHHHHHHHHHHCCCeecCCCC--CCeEEEEECHhHHHHH
Confidence 4455555433799999999999974 56 89999999999999944210 0123588999887544
No 405
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.70 E-value=0.018 Score=48.10 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=51.0
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCC-CC--CceEeCchhc
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDG-SE--ETMYGLTQIS 104 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~-~g--~~~y~lt~~s 104 (266)
.+|.--.++.|+..|.. ++.|+.|||+.+|+++.. +.+.|+.|...|++........ .| .-.|++|+.+
T Consensus 7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~st------Vs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTA------VAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAK 78 (232)
T ss_dssp HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHH------HHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccch
Confidence 44555566778888885 799999999999999776 9999999999999998321000 00 1248888765
Q ss_pred h
Q 042491 105 K 105 (266)
Q Consensus 105 ~ 105 (266)
.
T Consensus 79 ~ 79 (232)
T 2qlz_A 79 S 79 (232)
T ss_dssp E
T ss_pred h
Confidence 3
No 406
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=92.52 E-value=0.05 Score=41.79 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=38.7
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++.|.++||+.+++++.. +.++|..|...|++.-... ..|.|+++.
T Consensus 27 ~~~s~~~IA~~~~i~~~~------l~kil~~L~~aGlv~s~rG----~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLY------LEQLVGPLRNAGLIRSVRG----AKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEECSS----SSSEEEESS
T ss_pred CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCEEEecCC----CCCCeeecC
Confidence 589999999999999765 9999999999999986652 136788765
No 407
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=92.51 E-value=0.13 Score=43.92 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL 224 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl 224 (266)
.+.+.+- +....+|||+|||.|.++..++++.|-.+++++|+
T Consensus 81 ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 81 WMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 4455553 66667999999999999999998887767777776
No 408
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.48 E-value=0.066 Score=40.39 Aligned_cols=61 Identities=10% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhc-----CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeC
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGI-----NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGL 100 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~-----g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~l 100 (266)
+..+.-|++.|...+++.|++||.+.+ +++ ...+.|.|+.|+..|++.+.... +|..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is------~~TVYR~L~~L~e~Glv~~~~~~--~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIG------LTTVYRTLQSMASSGLVDTLHTD--TGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCC------HHHHHHHHHHHHTTTSEEEEECT--TSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCC------HhhHHHHHHHHHHCCCEEEEEeC--CCceEEEe
Confidence 345667888887655799999999998 454 45599999999999999987732 23446764
No 409
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.25 E-value=0.055 Score=41.50 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=41.5
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++.|+..|... ++.|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPKAT------LSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCHHH------HHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEEEEE
Confidence 356788888864 689999999999999877 999999999999998754
No 410
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.22 E-value=0.037 Score=40.19 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=39.1
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAH 87 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~ 87 (266)
++.|+..+...|.++|..+||+.+|++... +.+.|+.|...|++...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~t------V~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVND------VRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHH------HHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEE
Confidence 345677764334489999999999999776 99999999999999876
No 411
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.19 E-value=0.065 Score=45.21 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=52.7
Q ss_pred hcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|+..|...+ +++|..|||+.+++++.. +.++++-|...|++.+....++...-...+|+.++.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~t------vt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHHKYPQ------TVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHH------HHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCChhh------HHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 455777787654 359999999999999777 99999999999999988733222334688999987655
No 412
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.08 E-value=0.061 Score=41.11 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=40.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|++.|... ++.|..|||+.+|+++.. +.+.++.|...|++.+..
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKLSPPS------VTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEe
Confidence 45678888774 789999999999999776 999999999999998654
No 413
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=91.94 E-value=0.099 Score=44.24 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.2
Q ss_pred CCceEEEecCCchHHHHHHHHH-------CCC-----CeEEEeec
Q 042491 192 GIRSLVDVGGGTGEELAEIVEF-------YPH-----IKGVNFDL 224 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~-------~P~-----l~~~~~Dl 224 (266)
+..+|+|||+|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999999887765 784 67888886
No 414
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=91.91 E-value=0.066 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=50.4
Q ss_pred HHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCC-CC-CceEeCchhc
Q 042491 27 SMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDG-SE-ETMYGLTQIS 104 (266)
Q Consensus 27 ~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~-~g-~~~y~lt~~s 104 (266)
..+|..-.++.|+..|.. ++.|..|||+.+|+++.. +.+.|+.|...|++.......+ ++ .-.|++|+..
T Consensus 9 lkaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~is~st------vs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK--RPYFVSELSRELGVGQKA------VLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 344445556667777765 799999999999998766 9999999999999988653111 11 2246666643
No 415
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.85 E-value=0.065 Score=41.16 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=40.6
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|+..|... ++.|..|||+.+|+++.. +.+.++-|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGLSVSA------VQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEE
Confidence 45677888764 789999999999999876 999999999999997654
No 416
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.83 E-value=0.13 Score=39.94 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhcC-CCCCCCCchhhHHHHHHHHhccCcccccccCCC-CCCc----eEeCchhchh
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGIN-SSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDG-SEET----MYGLTQISKW 106 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~g-~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~-~g~~----~y~lt~~s~~ 106 (266)
.++.|+..|..+. +..|++||++.++ +++.. +.|.|+.|+..|++++....++ .+.| .|++|+.++.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aT------VyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEAN------LRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHH------HHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHH------HHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHH
Confidence 4556666665432 4579999999998 87655 9999999999999997643211 1122 6999999974
Q ss_pred -hhcCCCCChHHHHHHhcChhhhhhhhhhHHHH
Q 042491 107 -LLRDSEMSLAPMILFQNSQLLQAPCHHLSQCV 138 (266)
Q Consensus 107 -l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 138 (266)
|...+ .+. ....|..|.+.+
T Consensus 104 ~l~~y~--~la----------~~~alr~l~~~v 124 (151)
T 3u1d_A 104 LLRAVS--MYE----------EAAVWRSVYEQM 124 (151)
T ss_dssp HHHHTT--CST----------HHHHTHHHHHHS
T ss_pred HHHHhH--HHh----------HHHHHHHHHHHh
Confidence 43321 111 125677777766
No 417
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=91.71 E-value=0.066 Score=41.09 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=41.2
Q ss_pred cChhhHhhhC----CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCC-CCceEeCchhchhhh
Q 042491 36 LRLADIMHCH----GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGS-EETMYGLTQISKWLL 108 (266)
Q Consensus 36 lglfd~L~~~----g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~-g~~~y~lt~~s~~l~ 108 (266)
+.++..|... ++++|..|||+.+++++.. +.++++-|...|++..... .| ..-...+|+.++.+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~t------vsr~v~~Le~~glVr~~~~--~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGVERTT------LTRNLEVMRRDGLVRVMAG--ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTCCHHH------HHHHHHHHHHTTSBC-------------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhh------HHHHHHHHHHCCCEEeeCC--CCCCeeEEEECHHHHHHH
Confidence 4455566542 2468999999999999776 9999999999999954432 22 123588888887544
No 418
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=91.51 E-value=0.074 Score=40.50 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchhch
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQISK 105 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~s~ 105 (266)
...|.++||+++|+++.. +.++++-|...|++......+++| ...|.++|+-.
T Consensus 50 ~~ps~~~LA~~~~~s~~~------v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEE------CTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp CSCCHHHHHTTSSSCHHH------HHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 568999999999999877 999999999999999854322222 35788888643
No 419
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=91.51 E-value=0.28 Score=42.08 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCC
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAP 232 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 232 (266)
...++..+. .....|||++||+|+.+.++++. +.+++++|+ |..++.++
T Consensus 225 ~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 225 AERLVRMFS---FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 344555443 24569999999999999998886 468999998 66666554
No 420
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.42 E-value=0.075 Score=36.09 Aligned_cols=53 Identities=8% Similarity=-0.000 Sum_probs=41.9
Q ss_pred hhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 38 LADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 38 lfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
.++.|++ |+..|+.+||.++|++... +.|+|--|...|.+.....+ +-+|..+
T Consensus 20 ~i~~L~~-~~~~Ta~~IAkkLg~sK~~------vNr~LY~L~kkG~V~~~~~~----PP~W~~~ 72 (75)
T 1sfu_A 20 EVLSLNT-NDYTTAISLSNRLKINKKK------INQQLYKLQKEDTVKMVPSN----PPKWFKN 72 (75)
T ss_dssp HHHTSCT-TCEECHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEECCS----SCEEEEC
T ss_pred HHHhCCC-CcchHHHHHHHHHCCCHHH------HHHHHHHHHHCCCEecCCCC----CCCccCC
Confidence 3446666 3569999999999999766 99999999999999888732 4566554
No 421
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=91.42 E-value=0.1 Score=41.75 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCc-ccccccCCCCCCceEeCchhc
Q 042491 33 AVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGV-FAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 33 a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gi-l~~~~~~~~~g~~~y~lt~~s 104 (266)
--...|.+.|...++++|..|||+.+|++.+. +.|-++.|...|+ +.... +.|.+++..
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~T------i~rdi~~L~~~G~~I~~~~-------~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQV------IVQDIAYLRSLGYNIVATP-------RGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHH------HHHHHHHHHHHTCCCEEET-------TEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEEC-------CEEEECCcc
Confidence 44567888888644679999999999999876 9999999999999 66543 678877643
No 422
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=91.40 E-value=0.077 Score=41.34 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=40.7
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|+..|... +++|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVALSPSP------CLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEeeec
Confidence 45678888774 789999999999999776 999999999999998765
No 423
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.34 E-value=0.094 Score=40.24 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=41.3
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+..|+..|... ++.|..|||+.+|+++.. +.+.++.|...|++.+..
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTRQR------IARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCHHH------HHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEE
Confidence 345688888874 789999999999999876 999999999999998654
No 424
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.32 E-value=0.063 Score=44.44 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
++.|..++|+++++++.. +.+.++.|...|+|.+... .+...+.+|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~isq~a------vSr~I~~LE~~~L~~R~~~---~R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQS------ASRIIIDLEKNGYITRTVT---KRGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEEEc---CCeEEEEECHHHHHHH
Confidence 568999999999999877 9999999999999999820 0126799999997655
No 425
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.29 E-value=0.074 Score=40.91 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=40.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|+..|... ++.|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGLAEST------IHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCSCHHH------HHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEEEE
Confidence 45678888774 789999999999999776 999999999999998754
No 426
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.28 E-value=0.033 Score=41.05 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=45.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcC----CCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCce-EeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGIN----SSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETM-YGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g----~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~-y~lt~~s~~l~ 108 (266)
++.|+..|... ++.|..|||+.++ +++.. +.++|+-|...|++.+... +..-. +.+|+.++.+.
T Consensus 12 ~~~vL~~l~~~-~~~t~~ela~~l~~~~~~s~~t------v~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 12 EWEVMNIIWMK-KYASANNIIEEIQMQKDWSPKT------IRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHHhccCCCcHhh------HHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHH
Confidence 34456666553 7899999999999 54444 9999999999999998762 11112 46777776544
No 427
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.17 E-value=0.1 Score=39.50 Aligned_cols=60 Identities=7% Similarity=0.293 Sum_probs=44.8
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhc-----CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGI-----NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~-----g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
.+.-|++.|...+ ++.|++||.+.+ +++ ...+.|.|+.|+..|++.+.... +|..+|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is------~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVG------LATVYRVLTQFEAAGLVVRHNFD--GGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHHTSEEEECSS--SSSCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCC------HHHHHHHHHHHHHCCcEEEEEeC--CCceEEEeC
Confidence 3456888887655 689999999998 444 45699999999999999987631 234567653
No 428
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.11 E-value=0.088 Score=41.13 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=42.0
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+..|+++|..+ +++|..+||+++|+++.. +.+-++-|...|++....
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~~t------v~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLSTTP------CWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCHHH------HHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeeece
Confidence 456788899874 799999999999999877 999999999999998654
No 429
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.96 E-value=0.052 Score=34.58 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=40.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAA 86 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~ 86 (266)
|-.|.+.|..+||-+.++..|++.|++.+. +..+||-|...|++.-
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kde------V~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQE------VVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHH------HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHH------HHHHHHHHHHCCCeec
Confidence 456788999888999999999999999877 9999999999999864
No 430
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.95 E-value=0.1 Score=42.11 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccc
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAH 87 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~ 87 (266)
.++....+..|+..|.. +++|..|||+.+|+++.. +.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~st------v~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQT------IYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEE
Confidence 34444566778889984 789999999999999776 99999999999999887
No 431
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=90.92 E-value=0.08 Score=40.75 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=40.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|+..|... ++.|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGVSPET------IHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTSCHHH------HHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHcCCcceEE
Confidence 45678888774 789999999999999876 999999999999998754
No 432
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=90.85 E-value=0.04 Score=37.76 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=39.7
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++.|++.|... ++.|+.||++.++.++. .....+.++|+-|...|++.+..
T Consensus 10 ~e~~vL~~L~~~-~~~t~~ei~~~l~~~~~--~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH-SSINTNEVIKELSKTST--WSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS-SSEEHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhcCC--ccHHHHHHHHHHHHHCCCeEEEe
Confidence 356677788763 78999999999974210 01345999999999999999876
No 433
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=90.81 E-value=0.14 Score=39.05 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
+..+.-|++.|...+++.|++||.+.+.-.. .......+.|.|+.|+..|++.+... ++|..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~--~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADAGEVDVLRT--AEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSSEEEEC--TTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCCEEEEEc--CCCceEEEEC
Confidence 3456668888877557999999999884211 01125669999999999999998763 1234567664
No 434
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.80 E-value=0.098 Score=41.38 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=41.8
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+..|+..|... +..|..|||+++|+++.. +.+.++.|...|++....
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~t------v~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAEST------IHERIRKLRESGVIKKFT 75 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEeee
Confidence 456788888874 789999999999999877 999999999999998754
No 435
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.79 E-value=0.093 Score=39.64 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=39.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+..|...|... ++.|..|||+.+|+++.. +.+.++.|...|++....
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~s~~t------v~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGISETA------VRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHH------HHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEeccc
Confidence 45577778763 689999999999998776 999999999999998665
No 436
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=90.77 E-value=0.047 Score=39.27 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=40.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
++.|+..|... +++|+.||++.++.+.. .....+.++|+-|...|++.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~--~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELE--WSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGC--CCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccC--CCHhhHHHHHHHHHHCCCEEEEe
Confidence 56688888874 68999999999986411 11455999999999999999877
No 437
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=90.51 E-value=0.1 Score=41.19 Aligned_cols=48 Identities=10% Similarity=0.267 Sum_probs=41.2
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+..|+..|... +++|..|||+++|+++.. +.+.++-|...|++....
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~t------v~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPEST------IHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeec
Confidence 345688888874 689999999999999877 999999999999997654
No 438
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.48 E-value=0.059 Score=38.36 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
++.|..|||+.+|++... +.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~is~~t------v~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTT------VENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCeEeec
Confidence 789999999999998766 999999999999999876
No 439
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.34 E-value=0.11 Score=41.89 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=35.2
Q ss_pred HhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 41 IMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 41 ~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+.+.|.|.|..|||+.+|++... +.+.|+.|...|++.+..
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~t------v~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRG------ALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEECC-
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHH------HHHHHHHHHHCCCEEecC
Confidence 344445689999999999998655 999999999999998876
No 440
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=90.11 E-value=0.24 Score=36.54 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhc------CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeC
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGI------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGL 100 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~l 100 (266)
.++-.+++=|+.+|.. +|.+--||++.+ ++++.. +...|+-|...|++.......+.| .-.|++
T Consensus 7 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gt------lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEVVEGT------VYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCHHH------HHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCccH------HHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 3444445556667776 789999999887 566555 999999999999998764211111 235999
Q ss_pred chhchh
Q 042491 101 TQISKW 106 (266)
Q Consensus 101 t~~s~~ 106 (266)
|+.++.
T Consensus 79 T~~G~~ 84 (117)
T 4esf_A 79 NEAGRQ 84 (117)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999974
No 441
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.80 E-value=0.22 Score=35.55 Aligned_cols=53 Identities=8% Similarity=0.258 Sum_probs=40.9
Q ss_pred HHHHHHhcChhh-HhhhCCCCC-CHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 29 ALKSAVELRLAD-IMHCHGSPI-TLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 29 ~L~~a~elglfd-~L~~~g~~~-t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.+.-.++..|.+ .+.. |..+ |..+||+.+|++... +.+.|+.|...|++....
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~vSr~t------vr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGVAAKT------VSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSSCTTH------HHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEeC
Confidence 344445555555 3443 4566 999999999999877 999999999999998776
No 442
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.72 E-value=0.089 Score=39.64 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=38.0
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
..++..|....+++|..|||+.+|+++.. +.++++-|...|++.+..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~st------vs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGN------VSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEe
Confidence 33556664223789999999999998766 999999999999999863
No 443
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=89.49 E-value=0.25 Score=31.47 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=41.5
Q ss_pred HhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 41 IMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 41 ~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
.|.....++|+.|+|...|++-+. .+.-|..|...|-|.+.+ .+|++.|
T Consensus 11 ll~s~~QGMTaGEVAA~f~w~Le~------ar~aLeqLf~~G~LRKRs-------SRYrlkp 59 (68)
T 3i71_A 11 LLTSVRQGMTAGEVAAHFGWPLEK------ARNALEQLFSAGTLRKRS-------SRYRLKP 59 (68)
T ss_dssp HHHHCTTCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC-------CEEEECC
T ss_pred HHHHHhccccHHHHHHHhCCcHHH------HHHHHHHHHhcchhhhhc-------cccccCc
Confidence 344333679999999999999776 888999999999999998 7999877
No 444
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.29 E-value=0.2 Score=42.16 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=52.4
Q ss_pred hcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+..+...|.+.+ +++|..|||+.+++++.. +.++++-|...|++.+....++...-...+|+.++.+.
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t------~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCYKQSD------LVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSSCGGG------THHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCHhh------HHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345677776542 579999999999999877 99999999999999887633222334688999987644
No 445
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=89.27 E-value=1.6 Score=35.39 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=34.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhCCC---------CCCeEEEEccCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATAPV---------YEGVSHVGGDML 245 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~ 245 (266)
+.++||+||+| . +..++.+.|+-+++-+|. ++-++.+++ .+||+++.||..
T Consensus 30 ~a~~VLEiGtG--y-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 30 EAEVILEYGSG--G-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HCSEEEEESCS--H-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred CCCEEEEECch--H-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 55799999985 3 444444456778888886 444443332 468999999954
No 446
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=89.12 E-value=1 Score=40.39 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCceEEEecCCchHHHHHHHHH---C----CCCeEEEeecHHHH
Q 042491 191 DGIRSLVDVGGGTGEELAEIVEF---Y----PHIKGVNFDLPHVV 228 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~~~---~----P~l~~~~~Dlp~v~ 228 (266)
+..-+||++|+|+|.++..+++. . ..++.+++|.....
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 34568999999999999988865 2 34588899984433
No 447
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=88.79 E-value=0.15 Score=46.60 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=52.0
Q ss_pred cChhhHhhhC-CCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 36 LRLADIMHCH-GSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 36 lglfd~L~~~-g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
..|+..|.+. ++++|..|||+++++++.. +.|+++-|...|++.+....++.+.-...+|+.++.+.
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~------~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFKPYY------LTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHH------HHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 4567777653 1579999999999999777 99999999999999987743222344688999887544
No 448
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=88.06 E-value=0.16 Score=41.99 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=40.6
Q ss_pred CHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 50 TLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 50 t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+..+||+.+++++.. +.+.++-|...|++.+.. ...+.+|+.++.+.
T Consensus 26 ~~~~La~~l~vs~~t------vs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQSGPT------VSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 449999999998766 999999999999999987 36799999987544
No 449
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=88.05 E-value=0.45 Score=35.04 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=51.7
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhcC------CCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEe
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGIN------SSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYG 99 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g------~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~ 99 (266)
+.++-..++-|+.+|.. +|.+.-||++.+. +++.. +...|+-|...|++.......+.+ .-.|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~gt------ly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQALPQGS------IYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCTTH------HHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCcch------HHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 34455556667777876 7899999998876 66665 999999999999998765211111 23699
Q ss_pred Cchhchh
Q 042491 100 LTQISKW 106 (266)
Q Consensus 100 lt~~s~~ 106 (266)
+|+.++.
T Consensus 81 lT~~G~~ 87 (117)
T 3elk_A 81 ITDAGKK 87 (117)
T ss_dssp ECHHHHH
T ss_pred ECHHHHH
Confidence 9999974
No 450
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=87.85 E-value=0.24 Score=38.23 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=46.7
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhc-----CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGI-----NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~-----g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
+..+.-|++.|...+++.|++||.+.+ +++ ...+.|.|+.|+..|++.+.... +|..+|..+
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is------~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS------ISSVYRILNFLEKENFISVLETS--KSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHTTSEEEEEET--TTEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCC------HhhHHHHHHHHHHCCcEEEEEeC--CCceEEEec
Confidence 455667889997755799999999998 444 45699999999999999987632 123457653
No 451
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=87.25 E-value=1.2 Score=38.08 Aligned_cols=65 Identities=17% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCceEEEecCCchHHHHHHHHHC-----CCCeEEEeec----HH-----------------------HHhhCCC------
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFY-----PHIKGVNFDL----PH-----------------------VVATAPV------ 233 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~-----P~l~~~~~Dl----p~-----------------------v~~~a~~------ 233 (266)
..+.||++|...|.-+..+++.. |+-+++++|. |+ .++.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46799999999999887776554 5778999984 11 0111111
Q ss_pred --CCCeEEEEccCCCC---CC--CccEEEe
Q 042491 234 --YEGVSHVGGDMLNA---VP--NADAVFM 256 (266)
Q Consensus 234 --~~ri~~~~gd~~~~---~p--~aD~~~l 256 (266)
.++|+++.||+.+. +| .+|++++
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfI 215 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRM 215 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence 38999999999874 33 2777765
No 452
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=87.23 E-value=0.98 Score=39.12 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=52.4
Q ss_pred CCceEEEecCCchHHHHHHHHHCC-CCeEEEeecHHHHhhCCC---------CCCeEEEEccCCCCCC------C-----
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYP-HIKGVNFDLPHVVATAPV---------YEGVSHVGGDMLNAVP------N----- 250 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~---------~~ri~~~~gd~~~~~p------~----- 250 (266)
+...||++|||-=+.+..+. .| +++++-+|.|.|++..++ .++..+++.|+.+.+. +
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 56789999999999877765 35 488999999999875442 5789999999987321 1
Q ss_pred ccEEEeccccccCC
Q 042491 251 ADAVFMKVIVLIQD 264 (266)
Q Consensus 251 aD~~~l~~vLHd~~ 264 (266)
-=++++--+||+.+
T Consensus 180 Pt~~i~Egvl~Yl~ 193 (310)
T 2uyo_A 180 RTAWLAEGLLMYLP 193 (310)
T ss_dssp CEEEEECSCGGGSC
T ss_pred CEEEEEechHhhCC
Confidence 23666667777654
No 453
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=87.19 E-value=0.29 Score=38.75 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=45.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhc--------CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchhc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGI--------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQIS 104 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~--------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~s 104 (266)
++-|+..|.. +|.+.-||++.+ ++++.. +.+.|+-|...|++.......+++ .-.|++|+.+
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~~~------ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G 75 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKASHQQ------VYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAG 75 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCHHH------HHHHHHHHHHTTSEEECCC---------CEEECHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCcCc------HHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHH
Confidence 4556777876 799999999988 455544 999999999999998765321111 3469999998
Q ss_pred h
Q 042491 105 K 105 (266)
Q Consensus 105 ~ 105 (266)
+
T Consensus 76 ~ 76 (179)
T 1yg2_A 76 R 76 (179)
T ss_dssp H
T ss_pred H
Confidence 6
No 454
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=86.85 E-value=0.26 Score=33.53 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhcCC-CCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 47 SPITLPQLASGINS-SCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 47 ~~~t~~eLA~~~g~-~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
+.+++.++|+.+++ ..++ +..++.+|.+.|++++.+
T Consensus 29 ~~i~l~~aa~~L~v~~kRR------iYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQKRR------IYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTCCTHH------HHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCcccee------hhhHHHHHhHhcceeecC
Confidence 67899999999999 7777 999999999999999987
No 455
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=86.69 E-value=0.19 Score=37.99 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=40.3
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++.|+..|....+++|..||++.++.+. ......+.++|+-|...|++.+..
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~--~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARR--DLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTC--CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccC--CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 45667778876226899999999998421 111345999999999999999876
No 456
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.66 E-value=0.19 Score=44.78 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccccc
Q 042491 24 FADSMALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRS 89 (266)
Q Consensus 24 ~~~~~~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~ 89 (266)
+..+++++...+..|++.|. + +++|..|||+.+|+++.. +.++++-|...|++.+.+.
T Consensus 11 ~~~~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gls~~t------v~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 11 HHMPKSVRAENISRILKRIM-K-SPVSRVELAEELGLTKTT------VGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp -----------CCCSHHHHH-H-SCBCHHHHHHHHTCCHHH------HHHHHHHHHHHTSEEEEEC
T ss_pred ccCchhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEeecC
Confidence 34567888888889999999 5 799999999999999766 9999999999999998763
No 457
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=86.55 E-value=0.52 Score=34.56 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=50.4
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhc--------CCCCCCCCchhhHHHHHHHHhccCcccccccC--CCCCCce
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGI--------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSS--DGSEETM 97 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~--------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~--~~~g~~~ 97 (266)
+.++-..++=|..+|.. +|.+--+|.+.+ ++++.. +.++|+-|...|++...... ++...-.
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~gt------ly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNEAT------LYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCHHH------HHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCcch------HHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 44455556666777776 789999998887 455544 99999999999999876421 1111235
Q ss_pred EeCchhchh
Q 042491 98 YGLTQISKW 106 (266)
Q Consensus 98 y~lt~~s~~ 106 (266)
|++|+.++.
T Consensus 79 Y~LT~~G~~ 87 (116)
T 3f8b_A 79 YRLTEIGHE 87 (116)
T ss_dssp EEECHHHHH
T ss_pred EEECHHHHH
Confidence 999999974
No 458
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.40 E-value=0.39 Score=35.35 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=49.9
Q ss_pred HHHHHHHhcChhhHhhhCCCCCCHHHHHhhc------CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEe
Q 042491 28 MALKSAVELRLADIMHCHGSPITLPQLASGI------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYG 99 (266)
Q Consensus 28 ~~L~~a~elglfd~L~~~g~~~t~~eLA~~~------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~ 99 (266)
+.++-.+++=|..+|.. +|.+--||++.+ ++++.. +..+|+-|...|++.......++| .-.|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gt------lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEIVEGT------VYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCHHH------HHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCccH------HHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 34444455556677776 789989999987 455544 999999999999998764211112 23599
Q ss_pred Cchhchh
Q 042491 100 LTQISKW 106 (266)
Q Consensus 100 lt~~s~~ 106 (266)
+|+.++.
T Consensus 80 lT~~G~~ 86 (116)
T 3hhh_A 80 LTSSGEA 86 (116)
T ss_dssp ECHHHHH
T ss_pred ECHHHHH
Confidence 9999974
No 459
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.19 E-value=0.14 Score=45.11 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+..|+..|... +++|..|||+.+|+++.. +.|.|+.|...|+++... ....+|+.++.+.
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~vs~~T------v~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGITERV------LRTETDVLKQLNLIEPSK-------SGMTLTERGLEVY 81 (345)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHH
Confidence 46677788764 789999999999999988 999999999999998544 3466888776544
No 460
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.13 E-value=0.22 Score=38.22 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhc--------CCCCCCCCchhhHHHHHHHHhccCcccccccC--CCCCCceE
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGI--------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSS--DGSEETMY 98 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~--------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~--~~~g~~~y 98 (266)
.+.-..++-|+.+|.. ++.+.-||++.+ ++++.. +.++|+-|...|++...... ++...-.|
T Consensus 37 ~~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~is~gt------Ly~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVIKETT------LYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp SGGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCCCHHH------HHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred HhcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCcChhH------HHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 3444456677778876 789999988887 466555 99999999999999876421 11122469
Q ss_pred eCchhchhh
Q 042491 99 GLTQISKWL 107 (266)
Q Consensus 99 ~lt~~s~~l 107 (266)
++|+.++.+
T Consensus 109 ~LT~~G~~~ 117 (145)
T 1xma_A 109 RITPEGIKY 117 (145)
T ss_dssp EECHHHHHH
T ss_pred EECHHHHHH
Confidence 999998744
No 461
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=86.04 E-value=0.34 Score=39.89 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=41.8
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchhhh
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+.+..+||+.+++++.. +.+.++-|...|++.+.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~vs~~t------vs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPT------VSQTVARMERDGLVVVAS------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECT------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHH
Confidence 34569999999998766 999999999999999987 46799999987544
No 462
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=85.60 E-value=0.3 Score=36.13 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=43.6
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchh
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQI 103 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~ 103 (266)
..|.+.+.. .|.++.|||+.+|+++.. +..+|+.|+..|.+.... .+.|.++..
T Consensus 10 ~~i~~~~~~--~p~~~~~la~~~~~~~~~------~~~~l~~l~~~G~l~~i~------~~~~~~~~~ 63 (121)
T 2pjp_A 10 QKAEPLFGD--EPWWVRDLAKETGTDEQA------MRLTLRQAAQQGIITAIV------KDRYYRNDR 63 (121)
T ss_dssp HHHGGGCSS--SCEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEEEEE------TTEEEEHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEEec------CCceECHHH
Confidence 345555643 578999999999998766 999999999999999988 477776653
No 463
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=85.06 E-value=0.59 Score=40.27 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=43.0
Q ss_pred CCCCceEEEecCCchHHHHHHHHHCCCCeEEEeecHHHHhhCC---C--C-CCeEEEEc-cCCCCCC-CccEEEec
Q 042491 190 FDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAP---V--Y-EGVSHVGG-DMLNAVP-NADAVFMK 257 (266)
Q Consensus 190 ~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~---~--~-~ri~~~~g-d~~~~~p-~aD~~~l~ 257 (266)
+....+|||+||+.|.+...+++..+-..++++|+-......+ . . +-+.+..+ |++.-.+ .+|+++.-
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeec
Confidence 5677899999999999999999887666667777732110000 0 1 22444444 5554222 38988864
No 464
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=83.72 E-value=0.5 Score=38.31 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhchh
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKW 106 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~~ 106 (266)
++++..+||+.+|+.+.. +...++.|...|+++... +...+|+.++.
T Consensus 29 ~~V~~~~LA~~LgvS~~S------V~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~ 75 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGS------VRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKE 75 (200)
T ss_dssp SCBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEC---------CEEECHHHHH
T ss_pred CCccHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEEeC-------CCeEECHHHHH
Confidence 689999999999999877 999999999999998886 68889998864
No 465
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=83.60 E-value=0.22 Score=36.65 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=40.6
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++.|+..|... +++|..|||+.++.+.. .....+.++++-|...|++.+..
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~--~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKE--VSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCceEEEe
Confidence 456677788775 68999999999985311 11455999999999999999877
No 466
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.50 E-value=0.23 Score=35.33 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=42.0
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
-|.-|+..|..+| .+++..||..+++++... +.++|+.|...|++....
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~------vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTE------INKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHH------HHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHH------HHHHHHHHHhCCCEEEec
Confidence 3455778887754 679999999999999876 999999999999999876
No 467
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=83.22 E-value=0.55 Score=41.99 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=43.6
Q ss_pred HHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccccc
Q 042491 30 LKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRS 89 (266)
Q Consensus 30 L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~ 89 (266)
++..-+..|++.|..+ +++|..|||+.+|+++.. +.++++-|...|++.+.+.
T Consensus 13 ~r~~n~~~il~~l~~~-~~~sr~~la~~~~ls~~t------v~~~v~~L~~~g~i~~~~~ 65 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAPAS------ITKIVHEMLEAHLVQELEI 65 (406)
T ss_dssp HHHHHHHHHHHHHHSS-CSCCHHHHHHHTTCCHHH------HHHHHHHHHHHTSEEEC--
T ss_pred HHHhHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCcEEeecc
Confidence 4444555688899875 799999999999999766 9999999999999998653
No 468
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=83.21 E-value=0.27 Score=37.93 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=44.2
Q ss_pred HhcChhhHhhhCC-CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeC
Q 042491 34 VELRLADIMHCHG-SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGL 100 (266)
Q Consensus 34 ~elglfd~L~~~g-~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~l 100 (266)
.+.-|++.|...+ ++.|++||.+.+.-... ......+.|.|+.|+..|++.+.... +|..+|.+
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~-~is~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~ 82 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGE-EIGLATVYRVLNQFDDAGIVTRHHFE--GGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTSEEEEECG--GGCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHCCcEEEEEeC--CCceEEEe
Confidence 3455788887655 68999999999832100 11245699999999999999987521 12346765
No 469
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=82.25 E-value=2.3 Score=35.49 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHhhcccCCCCCceEEEecCCchHHHHHHHHHCCCCeEEEeec-HHHHhhC
Q 042491 179 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDL-PHVVATA 231 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a 231 (266)
...++..+. .....|||..||+|+.+.+..+. +-+++++|+ |..++.+
T Consensus 202 ~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 202 IERIIRASS---NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp HHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 444555442 34579999999999999998887 568999998 5455443
No 470
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=82.25 E-value=0.61 Score=33.52 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHh
Q 042491 32 SAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLV 79 (266)
Q Consensus 32 ~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~ 79 (266)
.+.++||+..|.. +..|..|||+.+|++.. ++.|+-|.|.
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~s------tISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGIA------TITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCChh------hhhHHHHHHH
Confidence 3456899999986 78999999999999853 4777766654
No 471
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=82.17 E-value=2.1 Score=38.49 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCceEEEecCCchHHHHHHH-HHCCC-CeEEEeec-HHHHhh
Q 042491 191 DGIRSLVDVGGGTGEELAEIV-EFYPH-IKGVNFDL-PHVVAT 230 (266)
Q Consensus 191 ~~~~~vvDvGgG~G~~~~~l~-~~~P~-l~~~~~Dl-p~v~~~ 230 (266)
.+...|+|||++.|.++..++ +..|. .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 466899999999999999988 67776 79999996 555443
No 472
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=82.13 E-value=1.3 Score=36.68 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=43.7
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
.-|.-.|.. ++.|.++||+.+|++++- +...|.-|...|+++... +++..+..
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l~~~~------V~~~l~~L~~~~~v~~~~------~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNLKERE------VREKISEMARFVPVKIIN------DNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTCCHHH------HHHHHHHHTTTSCEEEET------TTEEEECH
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCcCHHH------HHHHHHHHHhcCCeEEec------CCeEEecH
Confidence 345555665 899999999999999876 999999999999998776 47777655
No 473
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=81.69 E-value=0.37 Score=34.82 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=45.9
Q ss_pred HHhcChhhHhhhCCCCCCHHHHHhhc----CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchhchh
Q 042491 33 AVELRLADIMHCHGSPITLPQLASGI----NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQISKW 106 (266)
Q Consensus 33 a~elglfd~L~~~g~~~t~~eLA~~~----g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~s~~ 106 (266)
..++-|+..|.. +|.+--+|++.+ ++++.. +.++|+-|...|++....... ++ .-.|++|+.++.
T Consensus 9 ~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~~t------ly~~L~~Le~~GlI~~~~~~~-~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 9 LIEYLILAIVSK--HDSYGYDISQTIKLIASIKEST------LYPILKKLEKAGYLSTYTQEH-QGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCHHH------HHHHHHHHHHTTSEEEEEEEE-TTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCcCh------HHHHHHHHHHCCCeEEEeecC-CCCcceEEEECHHHHH
Confidence 345556667776 677777777664 676655 999999999999998764211 11 234999999874
No 474
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=81.20 E-value=0.56 Score=35.86 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=44.7
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
.+.-|++.|...+ +.|++||.+.+.-... ......+.|.|+.|+..|++.+.... +|..+|.+.
T Consensus 20 qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~-~is~~TVYR~L~~L~e~Glv~~i~~~--~~~~~Y~~~ 83 (145)
T 3eyy_A 20 QRQLVLEAVDTLE-HATPDDILGEVRKTAS-GINISTVYRTLELLEELGLVSHAHLG--HGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHHTTCT-TCCHHHHHHHHHHHHHHTSEEEEECG--GGCEEEEET
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHhhCC-CCCHhHHHHHHHHHHHCCcEEEEEeC--CCceEEEeC
Confidence 4556788887764 8999999998842211 12356799999999999999987631 233467653
No 475
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.82 E-value=0.64 Score=41.97 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 29 ALKSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 29 ~L~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
.++..-+..|++.|... +++|..|||+.+|+++.. +.++++-|...|++.+.+
T Consensus 35 ~~r~~n~~~il~~l~~~-~~~sr~ela~~~gls~~t------v~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 35 HIKQINAGRVYKLIDQK-GPISRIDLSKESELAPAS------ITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHHH-CSBCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEEecc
Confidence 35555666789999875 799999999999999766 999999999999999875
No 476
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=80.58 E-value=0.72 Score=43.61 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=50.3
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhc-----cCcccccccCCCCCCceEeCchhchhhh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVR-----KGVFAAHRSSDGSEETMYGLTQISKWLL 108 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~-----~gil~~~~~~~~~g~~~y~lt~~s~~l~ 108 (266)
+..|+..|..+ +.+|..+||+.+++++.. +.+.|+.|.. .|+++..+ +.|.+++......
T Consensus 432 ~~~iL~~l~~~-~~it~~~la~~l~~s~~~------~~~~L~~L~~~~~~~~glie~~g-------~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 432 IAIVLYLLFQR-PFITIDVVARGLQSGKEA------ARNALEAARQTTVAGAPLIIAHD-------GVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTSCHHH------HHHHHHHHHTCEETTEESEEEET-------TEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHhCcCHHH------HHHHHHHHHhhhccccceEEEeC-------CEEEECHHHHHHh
Confidence 34577777775 789999999999999877 9999999999 89999987 7899999755333
No 477
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=80.58 E-value=0.5 Score=34.68 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=45.8
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcC------CCCCCCCchhhHHHHHHHHhccCcccccccCCCCC--CceEeCchhchh
Q 042491 35 ELRLADIMHCHGSPITLPQLASGIN------SSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSE--ETMYGLTQISKW 106 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g------~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g--~~~y~lt~~s~~ 106 (266)
++=|+..|.. +|.+--+|++.+. +++.. +...|+-|...|++.......++| .-.|++|+.++.
T Consensus 11 ~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~is~gt------lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~ 82 (115)
T 4esb_A 11 EGCILYIISQ--EEVYGYELSTKLNKHGFTFVSEGS------IYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLE 82 (115)
T ss_dssp HHHHHHHHHH--SCEEHHHHHHHHHHTTCTTCCHHH------HHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCcCh------HHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHH
Confidence 3445666765 7889999998874 55544 999999999999998764211112 235999999974
No 478
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=79.67 E-value=1.6 Score=35.33 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=46.8
Q ss_pred ChhhHhhhCCCCCCHHHHHhhc--------CCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCC--ceEeCchhch
Q 042491 37 RLADIMHCHGSPITLPQLASGI--------NSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEE--TMYGLTQISK 105 (266)
Q Consensus 37 glfd~L~~~g~~~t~~eLA~~~--------g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~--~~y~lt~~s~ 105 (266)
-|+..|.. +|.+--||++.+ ++++.. +...|+-|...|++.......++++ -.|++|+.++
T Consensus 40 ~IL~lL~~--~p~~GYeL~~~l~~~~~~~~~~s~g~------lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr 110 (204)
T 3l9f_A 40 IILGILSK--KERSGYEINDILQNQLSYFYDGTYGM------IYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGK 110 (204)
T ss_dssp HHHHHTSS--CCEEHHHHHHHHHHTSTTTEECCTTC------HHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHhCCccCCCcch------HHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHH
Confidence 45667775 899999999987 467777 9999999999999987653222232 3599999985
No 479
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=79.49 E-value=2.7 Score=39.16 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=46.1
Q ss_pred HHHhhcccCCCCCceEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-HHHHhhCCC------CCCeEEE
Q 042491 181 TLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFY-------------PHIKGVNFDL-PHVVATAPV------YEGVSHV 240 (266)
Q Consensus 181 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~------~~ri~~~ 240 (266)
-+++.++ -....+|+|-.||+|.++.+..+.. .+.+..++|+ |.+...++- .+.-.+.
T Consensus 208 lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~ 285 (530)
T 3ufb_A 208 FMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID 285 (530)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred HHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence 3444444 2344699999999999998776532 1346788887 444433321 2334567
Q ss_pred EccCCC-CC----C--CccEEEec
Q 042491 241 GGDMLN-AV----P--NADAVFMK 257 (266)
Q Consensus 241 ~gd~~~-~~----p--~aD~~~l~ 257 (266)
.+|.+. +. + .+|+|+..
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~N 309 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTN 309 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred ccccccCchhhhcccccceEEEec
Confidence 788775 21 1 38988753
No 480
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=79.02 E-value=0.91 Score=39.47 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=43.6
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
..|.+.|.. ++++|.+|||+.+++++.. +.|-++.|...|++.+... ...|++.+
T Consensus 8 ~~Il~~L~~-~~~~s~~eLa~~l~vS~~t------i~r~l~~L~~~G~~i~~~~-----g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLAN-GEFHSGEQLGETLGMSRAA------INKHIQTLRDWGVDVFTVP-----GKGYSLPE 62 (321)
T ss_dssp HHHHHHHTT-SSCBCHHHHHHHHTSCHHH------HHHHHHHHHHTTCCCEEET-----TTEEECSS
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCCCHHH------HHHHHHHHHhCCCcEEEec-----CCCcEEee
Confidence 456777765 4789999999999999877 9999999999999875542 13677754
No 481
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=78.11 E-value=1.3 Score=36.21 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc--hhhhcCCCCC
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS--KWLLRDSEMS 114 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s--~~l~~~~~~~ 114 (266)
-++|-.+||+.+|+.+.. +.|+|+-|...|++...+ +.+.+.... +.+....+.+
T Consensus 176 ~~~t~~~iA~~lG~sr~t------vsR~l~~L~~~g~I~~~~-------~~i~i~d~~~L~~~a~~~~~~ 232 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVT------VSRVLASLKRENILDKKK-------NKIIVYNLGELKHLSEQTSYY 232 (250)
T ss_dssp CCCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECS-------SEEEESCHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHhCCcHHH------HHHHHHHHHHCCCeEeCC-------CEEEEecHHHHHHHHccCccc
Confidence 378999999999998766 999999999999999887 555554433 2355444333
No 482
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=77.96 E-value=1.9 Score=33.46 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=44.5
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCC-CCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSC-PDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~-~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
.+.-|++.|...+++.|++||.+.+.-.. ........+.|.|+.|+..|++.+.... +|..+|...
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~--~~~~~Y~~~ 100 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFG--SAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-------CCEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeC--CCceEEEeC
Confidence 45668888877657999999998774210 0012256799999999999999988521 223467654
No 483
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=77.52 E-value=0.71 Score=41.22 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=44.2
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLT 101 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt 101 (266)
+..|+++|.. +|.++++|+.++|++... +...|-.|.-.|++.+.. .+.|+++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl~~~~------v~~~L~~LEl~G~v~~~~------Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGISPAV------VRTILLELELAGRLERHG------GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCCCHHH------HHHHHHHHHHTTCCEECT------TSEEEC-
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCcCHHH------HHHHHHHHHhCCcEEeCC------CceEecC
Confidence 3458888875 799999999999999776 888999999999999887 3777763
No 484
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=77.24 E-value=0.44 Score=37.02 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=37.9
Q ss_pred hcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccc
Q 042491 35 ELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAA 86 (266)
Q Consensus 35 elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~ 86 (266)
+..|.+.|.. |+.+|..+||+.+|++... +.+-++.|...|++..
T Consensus 15 ~~~Il~~l~~-~~~ls~~eLa~~lgvSr~~------vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILNELQK-DGRISNVELSKRVGLSPTP------CLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHH-CSSCCTTGGGTSSSCCTTT------SSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEEE
Confidence 3456666666 5789999999999999888 9999999999999974
No 485
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=76.89 E-value=2.1 Score=31.64 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHHHhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHh
Q 042491 31 KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLV 79 (266)
Q Consensus 31 ~~a~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~ 79 (266)
..+-++.|+..|.. ..|..|||+.+|++... +.|+-|.|-
T Consensus 61 aLs~R~eV~klL~~---G~syreIA~~~g~S~aT------IsRv~r~L~ 100 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ---GYTYATIEQESGASTAT------ISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHHHHH---TCCHHHHHHHHCCCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHCCCHHH------HHHHHHHHh
Confidence 44556899999986 49999999999998655 777777663
No 486
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=76.62 E-value=0.96 Score=34.74 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=40.1
Q ss_pred ChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCccccccc
Q 042491 37 RLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRS 89 (266)
Q Consensus 37 glfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~ 89 (266)
.|.+.|.+ |+.|..+||+++|++-.. +.-.|..|.-.|++.+...
T Consensus 15 ~ILE~Lk~--G~~~t~~Iak~LGlShg~------aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 15 DILALLAD--GCKTTSLIQQRLGLSHGR------AKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp HHHHHHTT--CCEEHHHHHHHHTCCHHH------HHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHh--CCccHHHHHHHhCCcHHH------HHHHHHHHHhcCceEEEEE
Confidence 46777884 899999999999999887 9999999999999999883
No 487
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=76.01 E-value=0.94 Score=32.89 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCCC-CHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 46 GSPI-TLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 46 g~~~-t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
|..+ |..+||+.+|++... +.+-++.|...|++....
T Consensus 30 G~~lPs~~~La~~~~vSr~t------vr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLT------VSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET
T ss_pred CCcCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEec
Confidence 3455 899999999998766 999999999999998776
No 488
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=75.73 E-value=1.3 Score=35.28 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++|-++||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 169 ~~t~~~lA~~lg~sr~t------vsR~l~~L~~~g~I~~~~-------~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREV------ITRMLRYFQVEGLVKLSR-------GKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEESC
T ss_pred cCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEeCC-------CEEEEeC
Confidence 78999999999999766 999999999999998876 6666544
No 489
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=75.64 E-value=1 Score=35.50 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
++|-.+||+.+|+.+.. +.|+|+-|...|++...+
T Consensus 164 ~~t~~~lA~~lg~sr~t------vsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREM------VGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEecC
Confidence 58999999999999766 999999999999998876
No 490
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=75.63 E-value=1.4 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCC-CHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 46 GSPI-TLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 46 g~~~-t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
|..+ |..+||+.+|++... +++-++.|...|++....
T Consensus 25 G~~LPse~~La~~~gvSr~t------Vr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPAT------ARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHH------HHHHHHHHHTTTSEEEET
T ss_pred CCcCcCHHHHHHHHCcCHHH------HHHHHHHHHHCCcEEEec
Confidence 4566 899999999998766 999999999999998877
No 491
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=75.34 E-value=2.1 Score=36.73 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=39.8
Q ss_pred CCceEEEecCCchHHHHHHHHHCCC----CeEEEeecHHHHhhCCCCCCeEEEEccCCC
Q 042491 192 GIRSLVDVGGGTGEELAEIVEFYPH----IKGVNFDLPHVVATAPVYEGVSHVGGDMLN 246 (266)
Q Consensus 192 ~~~~vvDvGgG~G~~~~~l~~~~P~----l~~~~~Dlp~v~~~a~~~~ri~~~~gd~~~ 246 (266)
+...||=||||.|..+.-|.+.+|+ ++.+++|-..-.......++|..+.. |++
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~-fvd 117 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVD 117 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEec-cCC
Confidence 4569999999999999999999887 59999996222222233567777765 444
No 492
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=74.93 E-value=1.1 Score=35.25 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++|-++||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 146 ~~t~~~lA~~lg~sr~t------vsR~l~~L~~~g~I~~~~-------~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGSVRET------VTKVIGELAREGYIRSGY-------GKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET-------TEEEESC
T ss_pred CCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEeCC-------CEEEEeC
Confidence 58999999999998766 999999999999999876 6666654
No 493
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=74.78 E-value=0.27 Score=43.33 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=47.4
Q ss_pred HhcChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhc
Q 042491 34 VELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQIS 104 (266)
Q Consensus 34 ~elglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s 104 (266)
.+..++-.|-.. ++.|+.|||+.+|++... +.+.|+-|...|++..... .+.+|+..+..
T Consensus 19 ~ea~vY~~Ll~~-g~~t~~eia~~~gv~~~~------Vy~~L~~L~~~GlV~~~~g----~p~~y~av~p~ 78 (342)
T 3qph_A 19 YEILTYWTLLVY-GPSTAKEISTKSGIPYNR------VYDTISSLKLRGFVTEIEG----TPKVYAAYSPR 78 (342)
T ss_dssp HTTSCSHHHHHH-HHHHHSCCSSSTTSSSCS------CCHHHHHHHHHTSEEEECC----TTCEEEECCHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHH------HHHHHHHHHHCCCEEEEcC----ceeEEEEcCHH
Confidence 455666666554 689999999999999999 9999999999999988752 24667765543
No 494
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=74.74 E-value=1.4 Score=35.51 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=36.6
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++|-.+||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 175 ~~t~~~iA~~lg~sr~t------vsR~l~~L~~~g~I~~~~-------~~i~i~d 216 (231)
T 3e97_A 175 PLGTQDIMARTSSSRET------VSRVLKRLEAHNILEVSP-------RSVTLLD 216 (231)
T ss_dssp CCCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEECS-------SCEEESC
T ss_pred CCCHHHHHHHhCCcHHH------HHHHHHHHHHCCcEEecC-------CEEEEeC
Confidence 78999999999999776 999999999999999887 5665544
No 495
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=74.24 E-value=1.5 Score=36.09 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=47.4
Q ss_pred cChhhHhhhCCCCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCchhch
Q 042491 36 LRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISK 105 (266)
Q Consensus 36 lglfd~L~~~g~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~~s~ 105 (266)
+.++.+|+-. +|+|-.||++..|+. ...+++-|...|++.+.+..+..|+-.|..|+...
T Consensus 103 LEtLaiIAy~-QPITR~eI~~irGv~---------~~~~v~~Lle~gLI~e~Gr~~~~Gp~ly~tT~~Fl 162 (219)
T 2z99_A 103 LETLAVVAYR-QPVTRARVSAVRGVN---------VDAVMRTLLARGLITEVGTDADTGAVTFATTELFL 162 (219)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHHTSC---------CHHHHHHHHHTTSEEEEEECTTTCCEEEEECHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCC---------HHHHHHHHHHCCCEEEccccCCCCCeEEEECHHHH
Confidence 3466777765 899999999999996 35799999999999998754444556788888653
No 496
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=73.94 E-value=1.1 Score=35.09 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
++|-++||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 139 ~~t~~~lA~~lg~sr~t------vsR~l~~L~~~g~I~~~~-------~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIRES------VSKVLADLRREGLIATAY-------RRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHH------HHHHHHHHHHHTSEEEET-------TEEEECC
T ss_pred cCCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEEecC-------CEEEEeC
Confidence 58999999999998766 999999999999999887 6666544
No 497
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=73.88 E-value=1.2 Score=35.11 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.5
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
++|-++||+.+|+.+.. +.|+|+-|...|++...+
T Consensus 167 ~~t~~~iA~~lg~sr~t------vsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRET------VGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCcHHH------HHHHHHHHHHCCcEEeCC
Confidence 68999999999998766 999999999999999877
No 498
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=73.73 E-value=1.6 Score=35.14 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
-++|-++||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 179 ~~~t~~~lA~~lg~sr~t------vsR~l~~l~~~g~I~~~~-------~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMTVSN------AIRTLSTFVSERMLALDG-------KRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSCHHH------HHHHHHHHHHTTSEEEET-------TEEEESC
T ss_pred cccCHHHHHHHhCCCHHH------HHHHHHHHHHCCCEeeCC-------CEEEEeC
Confidence 478999999999999766 999999999999999887 5665543
No 499
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=73.65 E-value=1.2 Score=35.64 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccc
Q 042491 48 PITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR 88 (266)
Q Consensus 48 ~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~ 88 (266)
++|-++||+.+|+.+.. +.|+|+-|...|++...+
T Consensus 187 ~lt~~~lA~~lg~sr~t------vsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVGCSREM------AGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHTCCHHH------HHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcHHH------HHHHHHHHHHCCCEEECC
Confidence 57999999999998766 999999999999999877
No 500
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=73.30 E-value=1.5 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCCHHHHHhhcCCCCCCCCchhhHHHHHHHHhccCcccccccCCCCCCceEeCch
Q 042491 47 SPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQ 102 (266)
Q Consensus 47 ~~~t~~eLA~~~g~~~~~~~~~~~l~rlLr~L~~~gil~~~~~~~~~g~~~y~lt~ 102 (266)
-++|-.+||+.+|+.+.. +.|+|+-|...|++...+ +.+.+..
T Consensus 176 ~~~t~~~lA~~lg~sr~t------vsR~l~~l~~~g~I~~~~-------~~i~i~d 218 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRET------VNKALADFAHRGWIRLEG-------KSVLISD 218 (227)
T ss_dssp CCCCHHHHHHHHTSCHHH------HHHHHHHHHHTTSEEEET-------TEEEESC
T ss_pred CCCCHHHHHHHhCCcHHH------HHHHHHHHHHCCCEEecC-------CEEEEcC
Confidence 368999999999999766 999999999999999877 6665543
Done!