BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042495
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 85/149 (57%), Gaps = 5/149 (3%)

Query: 13  QSPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMK 72
           +S  FD    +  +PF         I+ G       A AR DW ETP AHV   D+PG+K
Sbjct: 6   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65

Query: 73  KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHV 132
           K+ +K+EVE+  VL VSGER      K     +KWH+ ER+ GKF R+FR+     +E V
Sbjct: 66  KEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEV 121

Query: 133 KAHMKNGILRVTVPKLAEEKKRQPKVINI 161
           KA ++NG+L VTVPK AE KK + K I I
Sbjct: 122 KAGLENGVLTVTVPK-AEVKKPEVKAIQI 149


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 66/99 (66%), Gaps = 4/99 (4%)

Query: 51  ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKA 110
           AR DW ETP AHV   D+PG+KK+ +K+EVE+  VL VSGER      K     +KWH+ 
Sbjct: 2   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRV 57

Query: 111 ERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149
           ER+ GKF R+FR+     +E VKA ++NG+L VTVPK A
Sbjct: 58  ERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 4/97 (4%)

Query: 51  ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKA 110
           AR DW ETP AHV   D+PG+KK+ +K+EVE+  VL VSGER      K     +KWH+ 
Sbjct: 1   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDK----NDKWHRV 56

Query: 111 ERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPK 147
           ER+ GKF R+FR+     +E VKA ++NG+L VTVPK
Sbjct: 57  ERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 100

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 50  LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHK 109
           + R D  E     V+  D+PG+    +++++++  +L + GERKS    +   E E++ +
Sbjct: 4   VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKS----ESSTETERFSR 58

Query: 110 AERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPK 147
            ER +G F R+F +P S D + + A  +NG+L + +PK
Sbjct: 59  IERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 103

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 50  LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHK 109
           + R D  E     V+  D+PG+    +++++++  +L + GERKS    +   E E++ +
Sbjct: 7   VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKS----ESSTETERFSR 61

Query: 110 AERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPK 147
            ER +G F R+F +P S D + + A  +NG+L + +PK
Sbjct: 62  IERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99


>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
          Length = 102

 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 53  ADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAER 112
           ADW +  T   + LD+PG+    + +  E+   L VSGER   ++           ++ER
Sbjct: 9   ADWRDAGTHLDLLLDVPGVDAGTLAL-AEDGGQLTVSGERPGTEHLL---------RSER 58

Query: 113 TFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148
             G+F R+   P  V      A +  G+L V   KL
Sbjct: 59  PSGRFVRELAFPEPVRPASGVASLAGGVLTVRFEKL 94


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 34.7 bits (78), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 24/128 (18%)

Query: 35  PLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKS 94
           P++I +G  H + +A     W+       I L+  G   D ++I  + + ++    ER  
Sbjct: 58  PISIIEGDQHIKVIA-----WLPGVNKEDIILNAVG---DTLEIRAKRSPLMITESERI- 108

Query: 95  NDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEEKKR 154
              Y E  E E+           +R  ++P +V  E+  A  +NG+L V +PK     K 
Sbjct: 109 --IYSEIPEEEE----------IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK- 155

Query: 155 QPKVINID 162
             K INI+
Sbjct: 156 --KGINIE 161


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 34.3 bits (77), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 24/128 (18%)

Query: 35  PLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKS 94
           P++I +G  H + +A     W+       I L+  G   D ++I  + + ++    ER  
Sbjct: 44  PISIIEGDQHIKVIA-----WLPGVNKEDIILNAVG---DTLEIRAKRSPLMITESERI- 94

Query: 95  NDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEEKKR 154
              Y E  E E+           +R  ++P +V  E+  A  +NG+L V +PK     K 
Sbjct: 95  --IYSEIPEEEE----------IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK- 141

Query: 155 QPKVINID 162
             K INI+
Sbjct: 142 --KGINIE 147


>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
          Length = 393

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 41  GADHHQTLALARADWMETPTAHVITLDIPGMKKDNMK---IEVEENRVLRVSGERKSNDY 97
           G  H     +A A  +ET   + +  D+P + K+N K   IE   N  L+V+  +K  D 
Sbjct: 104 GGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADL 163

Query: 98  YKEGVEGE 105
            K+   G+
Sbjct: 164 IKKHAAGQ 171


>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 223

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 61  AHVITLDIPGMKKDNMKIEVEENRVLRVSGERKS 94
           +H + + IP    D++K++VEEN  + VSG  KS
Sbjct: 153 SHPVKMQIP----DSLKVKVEENTRITVSGYDKS 182


>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
          Length = 114

 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDY 97
          + DW +T +  VITL I  ++K+++ +E  E  +  +       DY
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDY 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,473,736
Number of Sequences: 62578
Number of extensions: 217817
Number of successful extensions: 560
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)