Query 042495
Match_columns 180
No_of_seqs 164 out of 1548
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 2E-29 4.4E-34 189.4 13.5 108 49-166 31-139 (142)
2 COG0071 IbpA Molecular chapero 100.0 2E-28 4.3E-33 185.4 14.3 108 49-162 39-146 (146)
3 PRK10743 heat shock protein Ib 100.0 2.1E-28 4.6E-33 183.2 13.5 104 49-162 33-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1E-26 2.2E-31 163.0 11.9 92 52-147 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 4.8E-25 1E-29 156.7 13.0 102 54-162 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 3.4E-25 7.3E-30 155.4 11.6 92 52-147 2-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3E-24 6.6E-29 150.0 12.4 89 51-147 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.9E-23 4.1E-28 144.8 10.8 82 54-147 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 7.5E-23 1.6E-27 140.9 10.7 82 54-147 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 1.4E-22 3E-27 139.9 10.6 82 55-148 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 8.8E-23 1.9E-27 139.8 9.1 79 54-147 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 9.2E-22 2E-26 135.5 10.6 81 55-147 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 1.3E-21 2.8E-26 135.6 10.4 82 53-146 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.9 9.5E-22 2.1E-26 136.6 9.7 83 57-147 4-87 (87)
15 cd06482 ACD_HspB10 Alpha cryst 99.9 2.4E-21 5.2E-26 134.4 9.9 80 58-146 6-86 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.9 5.4E-21 1.2E-25 131.3 11.2 88 54-147 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.5E-20 3.4E-25 129.3 10.6 79 56-146 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.1E-20 2.5E-25 129.9 8.8 77 59-147 6-83 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 1.4E-17 3.1E-22 116.3 9.7 81 55-147 10-91 (91)
20 KOG0710 Molecular chaperone (s 99.7 3.7E-18 8E-23 135.1 7.3 113 47-161 81-194 (196)
21 KOG3591 Alpha crystallins [Pos 99.7 1.1E-16 2.3E-21 124.1 12.5 104 51-167 63-167 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2.2E-14 4.7E-19 95.2 9.8 80 55-147 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 5E-12 1.1E-16 85.3 9.4 71 55-150 1-71 (78)
24 cd06463 p23_like Proteins cont 99.1 9.9E-10 2.1E-14 74.0 9.3 76 55-150 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.1 1.2E-09 2.6E-14 84.4 10.1 80 49-151 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 2E-08 4.4E-13 68.3 8.3 77 54-150 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 2.7E-06 5.9E-11 56.5 11.6 77 51-147 1-79 (79)
28 PF08190 PIH1: pre-RNA process 98.3 5.4E-06 1.2E-10 69.9 9.1 65 59-146 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 98.2 2.9E-05 6.3E-10 55.5 10.4 78 51-149 1-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.1 2.9E-05 6.3E-10 52.9 8.7 77 54-150 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 98.0 6.1E-05 1.3E-09 51.2 8.9 75 53-150 1-77 (85)
32 cd06488 p23_melusin_like p23_l 97.9 0.00025 5.3E-09 48.8 9.8 79 52-150 2-80 (87)
33 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00023 4.9E-09 48.7 9.4 75 53-150 1-77 (85)
34 cd06468 p23_CacyBP p23_like do 97.8 0.00037 8E-09 48.1 10.3 79 52-150 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 97.3 0.0037 7.9E-08 43.7 9.3 77 50-150 5-83 (93)
36 cd00237 p23 p23 binds heat sho 97.2 0.0094 2E-07 42.7 10.8 78 51-150 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.9 0.0075 1.6E-07 51.8 9.0 80 51-150 157-236 (356)
38 KOG1309 Suppressor of G2 allel 96.7 0.0081 1.8E-07 46.8 7.1 81 50-150 3-83 (196)
39 cd06490 p23_NCB5OR p23_like do 96.3 0.11 2.3E-06 35.7 10.2 76 53-150 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.9 0.13 2.8E-06 35.4 9.1 74 54-150 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.0 0.54 1.2E-05 33.4 9.8 79 51-149 5-86 (102)
42 PF13349 DUF4097: Domain of un 86.2 11 0.00024 27.9 9.4 82 51-144 66-147 (166)
43 COG5091 SGT1 Suppressor of G2 81.3 1.4 3.1E-05 36.9 2.8 82 50-150 176-257 (368)
44 KOG2265 Nuclear distribution p 81.1 14 0.0003 28.9 7.9 79 49-150 17-97 (179)
45 KOG3158 HSP90 co-chaperone p23 80.6 9 0.0002 29.8 6.8 81 49-151 6-86 (180)
46 cd06482 ACD_HspB10 Alpha cryst 78.4 4.7 0.0001 27.6 4.2 34 116-150 9-42 (87)
47 cd06477 ACD_HspB3_Like Alpha c 77.9 4.1 8.9E-05 27.7 3.8 32 117-149 9-40 (83)
48 cd06476 ACD_HspB2_like Alpha c 76.3 4.7 0.0001 27.3 3.8 32 116-148 8-39 (83)
49 cd06470 ACD_IbpA-B_like Alpha- 76.2 10 0.00022 25.7 5.5 36 115-151 11-46 (90)
50 cd06478 ACD_HspB4-5-6 Alpha-cr 76.1 6 0.00013 26.6 4.2 32 116-148 8-39 (83)
51 cd06497 ACD_alphaA-crystallin_ 75.5 5.4 0.00012 27.1 3.9 32 116-148 11-42 (86)
52 PF14913 DPCD: DPCD protein fa 75.4 30 0.00064 27.4 8.4 78 49-149 85-170 (194)
53 PRK10743 heat shock protein Ib 73.8 11 0.00023 28.1 5.4 32 117-149 47-78 (137)
54 cd06471 ACD_LpsHSP_like Group 71.6 6.6 0.00014 26.6 3.6 30 60-90 62-91 (93)
55 cd06479 ACD_HspB7_like Alpha c 70.5 10 0.00022 25.6 4.3 33 116-149 9-41 (81)
56 cd06472 ACD_ScHsp26_like Alpha 70.2 23 0.0005 23.9 6.2 33 116-149 10-43 (92)
57 cd06464 ACD_sHsps-like Alpha-c 69.8 8.6 0.00019 25.1 3.8 33 58-91 54-87 (88)
58 PF00347 Ribosomal_L6: Ribosom 69.3 12 0.00025 24.4 4.3 44 73-146 2-47 (77)
59 cd06498 ACD_alphaB-crystallin_ 69.3 9.2 0.0002 25.8 3.9 31 116-147 8-38 (84)
60 PRK05518 rpl6p 50S ribosomal p 69.1 27 0.00059 27.3 7.0 45 73-146 13-57 (180)
61 cd06480 ACD_HspB8_like Alpha-c 68.4 12 0.00026 25.9 4.3 32 60-91 58-90 (91)
62 TIGR03653 arch_L6P archaeal ri 68.0 33 0.00072 26.5 7.2 45 73-146 7-51 (170)
63 PRK11597 heat shock chaperone 67.7 16 0.00034 27.5 5.2 32 117-149 45-76 (142)
64 cd06526 metazoan_ACD Alpha-cry 67.4 11 0.00025 25.0 4.0 34 116-150 8-41 (83)
65 cd06475 ACD_HspB1_like Alpha c 67.3 11 0.00025 25.5 4.0 33 116-149 11-43 (86)
66 KOG1667 Zn2+-binding protein M 66.0 37 0.00081 28.2 7.3 83 50-151 214-296 (320)
67 cd06481 ACD_HspB9_like Alpha c 65.6 22 0.00048 24.1 5.2 34 116-150 8-41 (87)
68 PF00011 HSP20: Hsp20/alpha cr 65.2 16 0.00034 25.0 4.5 33 115-148 7-39 (102)
69 CHL00140 rpl6 ribosomal protei 65.0 26 0.00056 27.2 6.1 44 73-146 12-55 (178)
70 PF04972 BON: BON domain; Int 64.2 16 0.00034 22.7 4.1 25 69-94 12-36 (64)
71 PF08308 PEGA: PEGA domain; I 60.2 28 0.0006 22.1 4.8 42 52-93 26-68 (71)
72 KOG3591 Alpha crystallins [Pos 59.2 14 0.0003 28.7 3.6 30 65-94 120-150 (173)
73 PF12992 DUF3876: Domain of un 58.6 35 0.00077 23.8 5.3 40 49-89 24-68 (95)
74 TIGR03654 L6_bact ribosomal pr 57.5 48 0.001 25.6 6.4 44 73-146 11-54 (175)
75 PTZ00179 60S ribosomal protein 55.7 28 0.0006 27.4 4.9 21 73-94 12-32 (189)
76 cd06469 p23_DYX1C1_like p23_li 55.5 38 0.00083 21.7 4.9 34 60-94 36-70 (78)
77 PF01954 DUF104: Protein of un 55.4 12 0.00026 23.9 2.2 18 130-147 3-20 (60)
78 PRK10568 periplasmic protein; 55.0 26 0.00057 27.7 4.7 25 69-94 73-97 (203)
79 PTZ00027 60S ribosomal protein 54.7 51 0.0011 25.9 6.2 47 73-146 13-59 (190)
80 PRK05498 rplF 50S ribosomal pr 51.2 65 0.0014 25.0 6.2 44 73-146 12-55 (178)
81 COG0071 IbpA Molecular chapero 51.1 49 0.0011 24.5 5.4 32 117-149 52-83 (146)
82 COG0097 RplF Ribosomal protein 49.8 65 0.0014 25.2 6.0 24 69-93 8-31 (178)
83 KOG3413 Mitochondrial matrix p 48.1 9.5 0.0002 28.9 1.0 23 124-146 66-88 (156)
84 cd01759 PLAT_PL PLAT/LH2 domai 43.9 1.2E+02 0.0026 21.8 7.1 45 116-166 45-90 (113)
85 cd06467 p23_NUDC_like p23_like 43.1 54 0.0012 21.4 4.2 30 117-146 10-39 (85)
86 KOG3247 Uncharacterized conser 42.4 13 0.00028 32.9 1.2 76 50-150 3-81 (466)
87 KOG3260 Calcyclin-binding prot 38.8 1.3E+02 0.0029 23.8 6.1 77 53-149 77-154 (224)
88 COG4004 Uncharacterized protei 37.6 77 0.0017 22.1 4.1 33 53-90 26-58 (96)
89 PRK11198 LysM domain/BON super 36.1 57 0.0012 24.4 3.7 25 69-94 38-62 (147)
90 KOG0100 Molecular chaperones G 34.7 1.6E+02 0.0035 26.5 6.7 56 114-172 486-544 (663)
91 PF01491 Frataxin_Cyay: Fratax 34.2 54 0.0012 23.3 3.2 18 131-148 31-48 (109)
92 cd00503 Frataxin Frataxin is a 33.4 46 0.00099 23.6 2.7 19 130-148 28-46 (105)
93 cd02178 GH16_beta_agarase Beta 33.3 1.7E+02 0.0037 23.7 6.4 44 78-125 60-109 (258)
94 PRK00446 cyaY frataxin-like pr 32.1 46 0.00099 23.6 2.5 17 132-148 29-45 (105)
95 TIGR03421 FeS_CyaY iron donor 31.1 45 0.00097 23.5 2.3 18 131-148 26-43 (102)
96 PF06964 Alpha-L-AF_C: Alpha-L 28.1 1.4E+02 0.0031 22.5 4.9 28 121-148 149-176 (177)
97 KOG4356 Uncharacterized conser 28.0 12 0.00026 31.8 -1.3 70 56-148 236-308 (310)
98 PF14814 UB2H: Bifunctional tr 28.0 1.2E+02 0.0027 20.3 4.0 43 103-145 29-73 (85)
99 PF08845 SymE_toxin: Toxin Sym 26.4 1E+02 0.0023 19.3 3.1 23 66-89 33-56 (57)
100 cd06494 p23_NUDCD2_like p23-li 26.2 2.2E+02 0.0048 19.5 5.7 32 114-145 14-45 (93)
101 cd02175 GH16_lichenase lichena 26.1 2.4E+02 0.0051 22.0 5.9 49 73-126 31-80 (212)
102 PRK13726 conjugal transfer pil 25.9 95 0.0021 24.4 3.5 20 74-94 131-150 (188)
103 PF07873 YabP: YabP family; I 25.8 53 0.0011 21.0 1.7 22 71-93 23-44 (66)
104 PF15525 DUF4652: Domain of un 25.7 3.4E+02 0.0075 21.6 7.5 70 70-146 111-180 (200)
105 TIGR03422 mito_frataxin fratax 25.0 52 0.0011 23.0 1.7 16 133-148 30-45 (97)
106 PRK14290 chaperone protein Dna 24.7 4.5E+02 0.0098 22.6 9.5 46 117-166 274-319 (365)
107 PF05309 TraE: TraE protein; 22.0 1.1E+02 0.0025 23.5 3.3 20 74-94 131-150 (187)
108 TIGR02934 nifT_nitrog probable 21.9 1E+02 0.0022 20.2 2.5 23 137-163 9-31 (67)
109 PF05455 GvpH: GvpH; InterPro 21.2 4.1E+02 0.0088 20.8 6.2 37 57-94 133-169 (177)
110 TIGR02856 spore_yqfC sporulati 21.1 76 0.0017 21.5 1.9 24 69-93 39-62 (85)
111 cd02182 GH16_Strep_laminarinas 20.5 2.5E+02 0.0053 22.8 5.1 18 73-93 45-63 (259)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=2e-29 Score=189.42 Aligned_cols=108 Identities=20% Similarity=0.350 Sum_probs=95.3
Q ss_pred ccceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 49 ALARADWME-TPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 49 ~~p~~di~e-~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
..|++||+| ++++|+|+++|||++++||+|.+++ +.|+|+|+++. + .++..|+++||++|.|+|+|.||.+|
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~f~LP~~v 103 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ----P--EKEVKWLHQGLVNQPFSLSFTLAENM 103 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc----c--cCCCcEEEEEEeCcEEEEEEECCCCc
Confidence 558899998 5789999999999999999999999 89999999764 2 35678999999999999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 128 DLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 128 d~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
|.+ +|+|+||||+|+|||..++ ..++|+|+|+...+
T Consensus 104 d~~--~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~~ 139 (142)
T PRK11597 104 EVS--GATFVNGLLHIDLIRNEPE-AIAPQRIAISERPA 139 (142)
T ss_pred ccC--cCEEcCCEEEEEEeccCcc-ccCCcEEEECCccc
Confidence 998 6999999999999998544 45789999987543
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=185.45 Aligned_cols=108 Identities=41% Similarity=0.670 Sum_probs=100.5
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 49 ALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
..|++||++++++|+|.++||||++++|+|.+++ +.|+|+|++.. +...+...++++|+.+|.|+|+|.||..|+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECccccc
Confidence 6799999999999999999999999999999999 89999999987 566788999999999999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCccccCCCcEEEec
Q 042495 129 LEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 162 (180)
++.++|+|+||||+|+|||..++ ..+.++|.|+
T Consensus 114 ~~~~~A~~~nGvL~I~lpk~~~~-~~~~~~i~I~ 146 (146)
T COG0071 114 PEVIKAKYKNGLLTVTLPKAEPE-EKKPKRIEIE 146 (146)
T ss_pred ccceeeEeeCcEEEEEEeccccc-cccCceeecC
Confidence 99999999999999999999976 3567888874
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=2.1e-28 Score=183.18 Aligned_cols=104 Identities=16% Similarity=0.349 Sum_probs=92.3
Q ss_pred ccceeeEE-ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 49 ALARADWM-ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 49 ~~p~~di~-e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
..|++||+ +++++|+|+++|||++++||+|++++ +.|+|+|+++. + .++..|+++||++|+|+|+|.||.+|
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~V 105 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENI 105 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCc
Confidence 34889999 48999999999999999999999999 89999999865 2 25667999999999999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCccccCCCcEEEec
Q 042495 128 DLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162 (180)
Q Consensus 128 d~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 162 (180)
|.++ |+|+||||+|++||..++ ..++|+|+|+
T Consensus 106 d~~~--A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 106 HVRG--ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred ccCc--CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 9994 999999999999997544 4578999985
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=1e-26 Score=163.02 Aligned_cols=92 Identities=55% Similarity=1.034 Sum_probs=85.2
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
++||+|++++|+|.++|||+++++|+|++++++.|+|+|++.. +...++..++.+||.+|.|.|+|.||.+|+.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 3799999999999999999999999999987358999999876 444567889999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeC
Q 042495 132 VKAHMKNGILRVTVPK 147 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK 147 (180)
|+|+|+||||+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=4.8e-25 Score=156.70 Aligned_cols=102 Identities=39% Similarity=0.719 Sum_probs=85.9
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
||.+++++|.|.++|||+.+++|+|++++ +.|+|+|++.. ...+..++..|++++.|.|+|.||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 78999999999999999999999999999 89999999973 345677888999999999999999999999999
Q ss_pred EEEeCCEEEEEEeCcCccccCCCcEEEec
Q 042495 134 AHMKNGILRVTVPKLAEEKKRQPKVINID 162 (180)
Q Consensus 134 A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 162 (180)
|.|+||+|+|++||....+...+++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999998755678999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=3.4e-25 Score=155.43 Aligned_cols=92 Identities=34% Similarity=0.662 Sum_probs=83.1
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
++||+|++++|+|.++|||+++++|+|.+.+ +.|+|+|+++... +....+..++++||.+|.|.|.|.|| +++.+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHH
Confidence 5899999999999999999999999999999 8999999997621 12233467999999999999999999 799999
Q ss_pred eEEEEeCCEEEEEEeC
Q 042495 132 VKAHMKNGILRVTVPK 147 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK 147 (180)
|+|+|+||+|+|++||
T Consensus 78 i~A~~~dGvL~I~lPK 93 (93)
T cd06471 78 IKAKYENGVLKITLPK 93 (93)
T ss_pred CEEEEECCEEEEEEcC
Confidence 9999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=3e-24 Score=150.01 Aligned_cols=89 Identities=26% Similarity=0.440 Sum_probs=81.4
Q ss_pred ceeeEEECC-CeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCcc
Q 042495 51 ARADWMETP-TAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDL 129 (180)
Q Consensus 51 p~~di~e~~-~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 129 (180)
|++||++++ ++|+|.++|||+++++|+|.+.+ +.|+|+|+++. +.. ++.+|+.+|+.+|.|.|+|.||.+||.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 579999975 99999999999999999999999 89999999987 333 677899999999999999999999987
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 042495 130 EHVKAHMKNGILRVTVPK 147 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK 147 (180)
. +|+|+||+|+|+||+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=1.9e-23 Score=144.83 Aligned_cols=82 Identities=20% Similarity=0.466 Sum_probs=73.8
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
+|++++++|.|.++||||++++|+|++.+ +.|+|+|++.. . .++..|+.+| |.|+|.||.+||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 79999999999999999999999999999 89999999754 2 2345666655 99999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 042495 134 AHM-KNGILRVTVPK 147 (180)
Q Consensus 134 A~~-~~GvL~I~iPK 147 (180)
|+| +||||+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=7.5e-23 Score=140.95 Aligned_cols=82 Identities=17% Similarity=0.446 Sum_probs=72.4
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
+|.+++++|.|.++||||++++|+|++.+ +.|+|+|++.. + .++..|+++| |.|+|.||.+||.++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----R--QDEHGFISRE-----FHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----E--cCCCCEEEEE-----EEEEEECCCCcChHHeE
Confidence 47889999999999999999999999999 89999999754 2 2334566554 99999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 042495 134 AHM-KNGILRVTVPK 147 (180)
Q Consensus 134 A~~-~~GvL~I~iPK 147 (180)
|+| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=1.4e-22 Score=139.91 Aligned_cols=82 Identities=18% Similarity=0.437 Sum_probs=72.1
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
+++++++|.|.++||||++++|+|.+.+ +.|+|+|++.. +. ++..|+++ .|.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 6788999999999999999999999999 89999998755 22 34456644 4999999999999999999
Q ss_pred EEe-CCEEEEEEeCc
Q 042495 135 HMK-NGILRVTVPKL 148 (180)
Q Consensus 135 ~~~-~GvL~I~iPK~ 148 (180)
+|+ ||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=8.8e-23 Score=139.85 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=71.8
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
+|.|++++|.|.++||||++++|+|++.+ +.|+|+|+++. +. . ..+|+|+|+|.||.+||+++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~----~------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD----G------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC----C------CEEEEEEEEEECCCCcCHHHeE
Confidence 68899999999999999999999999999 89999999865 21 1 2478999999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 042495 134 AHM-KNGILRVTVPK 147 (180)
Q Consensus 134 A~~-~~GvL~I~iPK 147 (180)
|+| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 998 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=9.2e-22 Score=135.48 Aligned_cols=81 Identities=22% Similarity=0.410 Sum_probs=69.9
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
+..++++|.|.++||||++++|+|++.+ +.|+|+|++.. . .+...++. +.|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~-----~eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----R--MDRHGFVS-----REFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----e--ecCCCEEE-----EEEEEEEECCCCCChhhEEE
Confidence 3457899999999999999999999999 89999999854 2 22333554 45999999999999999999
Q ss_pred EEe-CCEEEEEEeC
Q 042495 135 HMK-NGILRVTVPK 147 (180)
Q Consensus 135 ~~~-~GvL~I~iPK 147 (180)
.|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 996 9999999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.3e-21 Score=135.63 Aligned_cols=82 Identities=21% Similarity=0.457 Sum_probs=72.2
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCe
Q 042495 53 ADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHV 132 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i 132 (180)
.+|+|++++|.|.++|||+++++|+|.+.+ +.|+|+|++.. +. +...+. .++|+|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 589999999999999999999999999999 89999999865 22 223333 3579999999999999999
Q ss_pred EEEEe-CCEEEEEEe
Q 042495 133 KAHMK-NGILRVTVP 146 (180)
Q Consensus 133 ~A~~~-~GvL~I~iP 146 (180)
+|.|. ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99997 999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=9.5e-22 Score=136.59 Aligned_cols=83 Identities=25% Similarity=0.511 Sum_probs=72.1
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEE
Q 042495 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHM 136 (180)
Q Consensus 57 e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~ 136 (180)
+..++|.|.++||||++++|+|++.+ +.|+|+|++.. +...+...|. +.+|.|.|+|.||.+||.++|+|.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 56789999999999999999999999 99999999866 3333334443 4589999999999999999999999
Q ss_pred -eCCEEEEEEeC
Q 042495 137 -KNGILRVTVPK 147 (180)
Q Consensus 137 -~~GvL~I~iPK 147 (180)
+||||+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=2.4e-21 Score=134.36 Aligned_cols=80 Identities=21% Similarity=0.465 Sum_probs=69.9
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEe
Q 042495 58 TPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMK 137 (180)
Q Consensus 58 ~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (180)
+++.|+|.++|||+++++|+|++.+ +.|+|+|+++. +.+... ..||++|+|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 4789999999999999999999999 89999999976 222111 24789999999999999999999999998
Q ss_pred CC-EEEEEEe
Q 042495 138 NG-ILRVTVP 146 (180)
Q Consensus 138 ~G-vL~I~iP 146 (180)
|| +|+|.-|
T Consensus 77 ~~~~l~i~~~ 86 (87)
T cd06482 77 LGSVVKIETP 86 (87)
T ss_pred CCCEEEEeeC
Confidence 76 9999877
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=5.4e-21 Score=131.33 Aligned_cols=88 Identities=45% Similarity=0.813 Sum_probs=80.2
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
++.+++++|+|.++|||+++++|+|++.+ +.|.|+|++... ... ...+...++.++.|.|+|.||..+|.+.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~----~~~-~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEE----EEE-EENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----ccc-CCcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 47889999999999999999999999999 999999999872 222 227888999999999999999999999999
Q ss_pred EEEeCCEEEEEEeC
Q 042495 134 AHMKNGILRVTVPK 147 (180)
Q Consensus 134 A~~~~GvL~I~iPK 147 (180)
|.|+||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.5e-20 Score=129.26 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=68.4
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEE
Q 042495 56 METPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAH 135 (180)
Q Consensus 56 ~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~ 135 (180)
.+++++|.|+++||||++++|+|.+.+ +.|+|+|++.. +. +...+. .++|+|+|.||.+|+.++|+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFI-----SRSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEE-----EEEEEEEEECCCCcchheEEEE
Confidence 367899999999999999999999999 89999999876 22 223343 2379999999999999999999
Q ss_pred E-eCCEEEEEEe
Q 042495 136 M-KNGILRVTVP 146 (180)
Q Consensus 136 ~-~~GvL~I~iP 146 (180)
| +||||+|+.|
T Consensus 71 ~~~dGvL~I~~~ 82 (83)
T cd06477 71 LCHDGILVVETK 82 (83)
T ss_pred EcCCCEEEEEec
Confidence 8 8999999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.1e-20 Score=129.92 Aligned_cols=77 Identities=27% Similarity=0.558 Sum_probs=67.8
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeC
Q 042495 59 PTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKN 138 (180)
Q Consensus 59 ~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~ 138 (180)
+++|.|.++||||++++|+|++++ +.|+|+|+++. +.. .. ++.++.|.|+|.||.+||.++++|+|.|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~----~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEE----RED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSS 73 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEee----ecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCC
Confidence 469999999999999999999999 89999999876 211 12 2346889999999999999999999998
Q ss_pred -CEEEEEEeC
Q 042495 139 -GILRVTVPK 147 (180)
Q Consensus 139 -GvL~I~iPK 147 (180)
|+|+|++||
T Consensus 74 ~GvL~I~~Pk 83 (83)
T cd06526 74 DGVLTIEAPK 83 (83)
T ss_pred CcEEEEEecC
Confidence 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=1.4e-17 Score=116.26 Aligned_cols=81 Identities=16% Similarity=0.346 Sum_probs=70.1
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|+++. +. +...++ .+.|.|+|.||.+||.+.|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~--~e~g~~-----~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ--KEGGIV-----SKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc--CCCCEE-----EEEEEEEEECCCCCCchhEEE
Confidence 3567889999999999999999999999 89999999976 22 223344 367999999999999999999
Q ss_pred EEe-CCEEEEEEeC
Q 042495 135 HMK-NGILRVTVPK 147 (180)
Q Consensus 135 ~~~-~GvL~I~iPK 147 (180)
.|. ||+|+|.+|.
T Consensus 78 ~l~~dGvL~IeaP~ 91 (91)
T cd06480 78 SLSPEGLLIIEAPQ 91 (91)
T ss_pred EeCCCCeEEEEcCC
Confidence 998 9999999983
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=135.08 Aligned_cols=113 Identities=45% Similarity=0.790 Sum_probs=95.2
Q ss_pred ccccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCC
Q 042495 47 TLALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMS 126 (180)
Q Consensus 47 ~~~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~ 126 (180)
....+++++.+.++.|++.++|||+.+++|+|.++++++|+|+|++..+. ++......|+..|+.+|.|.|.|.||++
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCcc
Confidence 34556778999999999999999999999999999955899999998831 2223667889999999999999999999
Q ss_pred CccCCeEEEEeCCEEEEEEeCcCcc-ccCCCcEEEe
Q 042495 127 VDLEHVKAHMKNGILRVTVPKLAEE-KKRQPKVINI 161 (180)
Q Consensus 127 vd~~~i~A~~~~GvL~I~iPK~~~~-~~~~~r~I~I 161 (180)
++.+.|+|.|+||||+|.+||.... +....+.|.|
T Consensus 159 v~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 159 VDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred ccHHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 9999999999999999999999874 2334455544
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-16 Score=124.14 Aligned_cols=104 Identities=18% Similarity=0.427 Sum_probs=90.6
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
...++..++++|.|.+|+..|++++|+|++.+ +.|.|+|++.. ..++.++..+ +|.|+|.||.+||++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee------r~d~~G~v~R-----~F~R~y~LP~~vdp~ 130 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE------KEDEHGYVSR-----SFVRKYLLPEDVDPT 130 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc------ccCCCCeEEE-----EEEEEecCCCCCChh
Confidence 45789999999999999999999999999999 89999999955 3366666644 499999999999999
Q ss_pred CeEEEEe-CCEEEEEEeCcCccccCCCcEEEeccCCCC
Q 042495 131 HVKAHMK-NGILRVTVPKLAEEKKRQPKVINIDEESGN 167 (180)
Q Consensus 131 ~i~A~~~-~GvL~I~iPK~~~~~~~~~r~I~I~~~~~~ 167 (180)
.|++.|. ||+|+|++||....+. ..|.|+|+..+..
T Consensus 131 ~V~S~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~~ 167 (173)
T KOG3591|consen 131 SVTSTLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGPS 167 (173)
T ss_pred heEEeeCCCceEEEEccCCCCcCc-cceEEeEeecCcc
Confidence 9999995 9999999999986533 6899999987664
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.58 E-value=2.2e-14 Score=95.16 Aligned_cols=80 Identities=46% Similarity=0.891 Sum_probs=71.3
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
|.++++.|.|++++||+.+++|.|.+++ +.|.|+|+.... .. .+...+.|.+.+.||..++++.++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 4678899999999999999999999999 899999998652 11 3445678999999999999999999
Q ss_pred EEeCCEEEEEEeC
Q 042495 135 HMKNGILRVTVPK 147 (180)
Q Consensus 135 ~~~~GvL~I~iPK 147 (180)
.|.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.38 E-value=5e-12 Score=85.26 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=64.5
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
|.++++.+.|++++||+++++|+|.+++ +.|.|++ . .|.+.+.||..|+++..+|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--~----------------------~~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--P----------------------PYLFELDLAAPIDDEKSSA 55 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--C----------------------CEEEEEeCcccccccccEE
Confidence 4688999999999999999999999999 8898886 1 1778999999999999999
Q ss_pred EEeCCEEEEEEeCcCc
Q 042495 135 HMKNGILRVTVPKLAE 150 (180)
Q Consensus 135 ~~~~GvL~I~iPK~~~ 150 (180)
.+.+|.|.|+++|..+
T Consensus 56 ~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 56 KIGNGVLVFTLVKKEP 71 (78)
T ss_pred EEeCCEEEEEEEeCCC
Confidence 9999999999999864
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.10 E-value=9.9e-10 Score=74.00 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=66.7
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
+.++++.+.|.+.+||+.++++.|.+++ +.|.|++.... .+.|...+.|+..|+++..++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~ 60 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKW 60 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEE
Confidence 4578899999999999999999999999 89999987531 133778899999999999999
Q ss_pred EEeCCEEEEEEeCcCc
Q 042495 135 HMKNGILRVTVPKLAE 150 (180)
Q Consensus 135 ~~~~GvL~I~iPK~~~ 150 (180)
++++|.|.|+++|..+
T Consensus 61 ~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 61 TVEDRKIEITLKKKEP 76 (84)
T ss_pred EEeCCEEEEEEEECCC
Confidence 9999999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.08 E-value=1.2e-09 Score=84.36 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=62.7
Q ss_pred ccceeeEEECCC-eEEEEEEcCCCCCCC-eEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCC
Q 042495 49 ALARADWMETPT-AHVITLDIPGMKKDN-MKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMS 126 (180)
Q Consensus 49 ~~p~~di~e~~~-~~~i~~~lPG~~~~d-I~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~ 126 (180)
..+.+++.+.++ .++|.++|||+++++ |+|.+.. +.+.|...... .|.+++.||..
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~~---------------------~~~krv~L~~~ 147 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRVGE---------------------KYLKRVALPWP 147 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEecCC---------------------ceEeeEecCCC
Confidence 457789998888 699999999999888 9999985 34444433322 15579999966
Q ss_pred CccCCeEEEEeCCEEEEEEeCcCcc
Q 042495 127 VDLEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 127 vd~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
+.+.++|.|+||||+|+|-+..+.
T Consensus 148 -~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 148 -DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred -ccceeeEEEeCceEEEEEeecCCC
Confidence 688899999999999999887653
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.85 E-value=2e-08 Score=68.27 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=67.1
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
||+++++.+.|.+.+||+.++++.|.+++ +.|.|++.... ...|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcE
Confidence 57899999999999999999999999999 88999866421 12366788999999999999
Q ss_pred EEEeCCEEEEEEeCcCc
Q 042495 134 AHMKNGILRVTVPKLAE 150 (180)
Q Consensus 134 A~~~~GvL~I~iPK~~~ 150 (180)
+.+.+|.|.|++.|..+
T Consensus 61 ~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 61 VSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEeCeEEEEEEEcCCC
Confidence 99999999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.56 E-value=2.7e-06 Score=56.51 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=63.9
Q ss_pred ceeeEEECCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 51 ARADWMETPTAHVITLDIPGM--KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~--~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
|.++|.++++...|.+.+++. ++++|.|.+++ +.|.|+..... + ..|...+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~--------~-----------~~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD--------G-----------KEYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT--------S-----------CEEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC--------C-----------ceEEEEEEEeeeEc
Confidence 468999999999999999665 49999999999 89999966533 0 12567788999999
Q ss_pred cCCeEEEEeCCEEEEEEeC
Q 042495 129 LEHVKAHMKNGILRVTVPK 147 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK 147 (180)
++..+..+.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.26 E-value=5.4e-06 Score=69.90 Aligned_cols=65 Identities=26% Similarity=0.554 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEe
Q 042495 59 PTAHVITLDIPGM-KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMK 137 (180)
Q Consensus 59 ~~~~~i~~~lPG~-~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (180)
.+.++|+++|||+ +..+|++.|.+ ..|.|...... |.-.+.||..||.+..+|.|+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEEEc
Confidence 5789999999999 78999999999 88888855422 668899999999999999996
Q ss_pred --CCEEEEEEe
Q 042495 138 --NGILRVTVP 146 (180)
Q Consensus 138 --~GvL~I~iP 146 (180)
.++|+|++|
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 689999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.20 E-value=2.9e-05 Score=55.53 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=66.0
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
|+++++++.+...|.+.+||+ +++.|.+.. +.|.|++.... ++ ..|.-.+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~----------~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GG----------KKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CC----------eeEEEEeEhhhhcccc
Confidence 468999999999999999998 889999999 88999975321 11 1255677899999999
Q ss_pred CeEEEEeCCEEEEEEeCcC
Q 042495 131 HVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~~ 149 (180)
..+.++.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999987
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.12 E-value=2.9e-05 Score=52.94 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=64.6
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeE
Q 042495 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133 (180)
Q Consensus 54 di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 133 (180)
||+++++...|.+.++|+.++++.|.+.+ +.|.+++.... + ..|.-.+.|...|+++..+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~----------~~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---------G----------NDYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------C----------CcEEEeeecCceecchhcE
Confidence 57889999999999999999999999999 88999876422 0 1255677899999999888
Q ss_pred EEEeCCEEEEEEeCcCc
Q 042495 134 AHMKNGILRVTVPKLAE 150 (180)
Q Consensus 134 A~~~~GvL~I~iPK~~~ 150 (180)
..+..+-+.|.|.|...
T Consensus 61 ~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 61 YKILSTKIEIKLKKTEA 77 (84)
T ss_pred EEEeCcEEEEEEEcCCC
Confidence 88889999999999864
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.03 E-value=6.1e-05 Score=51.16 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=61.1
Q ss_pred eeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 53 ADWMETPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
+.+.++++...|.+.+| ++.+++|.|.+.+ +.|.|+..... +.-.-.|...|+++.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~~~----------------------~~l~~~L~~~I~~~~ 57 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKGGE----------------------PLLDGELYAKVKVDE 57 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECCCC----------------------ceEcCcccCceeEcC
Confidence 36789999999999997 7899999999999 88988854211 112335888999999
Q ss_pred eEEEEeC-CEEEEEEeCcCc
Q 042495 132 VKAHMKN-GILRVTVPKLAE 150 (180)
Q Consensus 132 i~A~~~~-GvL~I~iPK~~~ 150 (180)
..-.+.+ ..|.|+++|.++
T Consensus 58 s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 58 STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEEeCCCEEEEEEEECCC
Confidence 8888999 999999999874
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.88 E-value=0.00025 Score=48.85 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=66.0
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
+.||+++++...|.+.+.|+.++++.|.+++ +.|.|+..... + ..|.-.+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~----------~---------~~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG----------N---------KEFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC----------C---------ceEEEEeeccceEChhH
Confidence 3689999999999999999999999999988 78888754321 0 12567778999999999
Q ss_pred eEEEEeCCEEEEEEeCcCc
Q 042495 132 VKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK~~~ 150 (180)
.+.....+-+.|++.|.++
T Consensus 62 s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred cEEEecCcEEEEEEEeCCC
Confidence 8888889999999999874
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.86 E-value=0.00023 Score=48.74 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=59.6
Q ss_pred eeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 53 ADWMETPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
++++++.+...|.+.+| |+.+++|.|.+.. +.|.|... . + .. + -.-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~----~-----~~----------~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--D----Q-----AP----------L-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--C----C-----Ce----------E-EeCcccCcccccC
Confidence 46889999999999996 9999999999999 78888743 1 0 00 1 2337888999999
Q ss_pred eEEEEeCC-EEEEEEeCcCc
Q 042495 132 VKAHMKNG-ILRVTVPKLAE 150 (180)
Q Consensus 132 i~A~~~~G-vL~I~iPK~~~ 150 (180)
.+=.+.+| .|.|.+.|+.+
T Consensus 58 Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred cEEEEeCCCEEEEEEEECCC
Confidence 87777777 79999999874
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.85 E-value=0.00037 Score=48.12 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=64.6
Q ss_pred eeeEEECCCeEEEEEEcCCCCC---CCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEE-CCCCC
Q 042495 52 RADWMETPTAHVITLDIPGMKK---DNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFR-MPMSV 127 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~---~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~-LP~~v 127 (180)
.++|+++++...|.+.+|+..+ +++.|.++. +.|.|++.... +. .|.-.+. |-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~----------~~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GK----------NYRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------Cc----------EEEEEehHhhCcc
Confidence 4789999999999999999987 999999999 88999874311 11 1334553 88999
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCc
Q 042495 128 DLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 128 d~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
+++..+..+..+-+.|++.|..+
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99999999999999999999874
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.30 E-value=0.0037 Score=43.74 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=61.1
Q ss_pred cceeeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 50 LARADWMETPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
.+.+.+.++.+...|++.|| |++.+||.|.+.. +.|.|..+ . ..+. .| .|...|+
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~--g----------~~~l-----~G------~L~~~I~ 60 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK--G----------QEVL-----KG------KLFDSVV 60 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC--C----------EEEE-----cC------cccCccC
Confidence 45689999999999999998 8999999999999 88888741 1 0011 11 5788899
Q ss_pred cCCeEEEEeCC-EEEEEEeCcCc
Q 042495 129 LEHVKAHMKNG-ILRVTVPKLAE 150 (180)
Q Consensus 129 ~~~i~A~~~~G-vL~I~iPK~~~ 150 (180)
++.-.=.+++| +|.|.|.|...
T Consensus 61 ~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 61 ADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred cccCEEEEECCcEEEEEEEeCCC
Confidence 99877788877 58999999853
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.21 E-value=0.0094 Score=42.66 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=61.0
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
|.+++.+..+.+.|++.+|+ .++++|.++. +.|.++|.-. ++.. |.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcE----------EEEEEEeecccCcc
Confidence 67899999999999999999 5799999999 7899998421 1111 33466777889999
Q ss_pred CeEEEEeCCEEEEEEeCcCc
Q 042495 131 HVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~~~ 150 (180)
..+.+...--+.|.|.|+++
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred cCeEEeCCceEEEEEEeCCC
Confidence 87777666688889999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.86 E-value=0.0075 Score=51.83 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=67.2
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
++.+|+++++...|.+-+.|+.++++.|.+.+ +.|.|+..... + ..|...+.|-..|+++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~----------~---------~~y~~~~~L~~~I~p~ 216 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG----------E---------DAYHLQPRLFGKIIPD 216 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC----------C---------cceeeccccccccccc
Confidence 56899999999999999999999999999999 78888865422 1 1244567888999999
Q ss_pred CeEEEEeCCEEEEEEeCcCc
Q 042495 131 HVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~~~ 150 (180)
..+..+.-.-+.|+|.|...
T Consensus 217 ~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 217 KCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred ccEEEEecceEEEEEecCCC
Confidence 98888888899999999874
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.69 E-value=0.0081 Score=46.76 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=64.5
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCcc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDL 129 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 129 (180)
.++.||+++....+|.+-.+|+.++++.|.+.+ +.|.|..+... +. .|.-...|=..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~----------~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GS----------EYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---------ch----------hhhhhHHhcccccc
Confidence 356899999999999999999999999999998 88888766543 11 14444557788999
Q ss_pred CCeEEEEeCCEEEEEEeCcCc
Q 042495 130 EHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK~~~ 150 (180)
++.+-+.----+.|+|+|...
T Consensus 63 e~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred cceeeEeeeeeEEEEeccccc
Confidence 987776667789999999653
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.30 E-value=0.11 Score=35.66 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=55.1
Q ss_pred eeEEECCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 53 ADWMETPTAHVITLDIPGM--KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lPG~--~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
.||+++++...|.+-..+. +..++.+.... +.|.|+-.... ..|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~--------------------~~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD--------------------KSYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC--------------------ceEEEeeeccccCCCC
Confidence 4899999999999998864 44555565565 67888743211 1155677888889877
Q ss_pred CeEEEEe--CCEEEEEEeCcCc
Q 042495 131 HVKAHMK--NGILRVTVPKLAE 150 (180)
Q Consensus 131 ~i~A~~~--~GvL~I~iPK~~~ 150 (180)
. +.++. -|-++|++.|.++
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred c-EEEEcccCceEEEEEEcCCC
Confidence 5 56665 7899999999875
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.92 E-value=0.13 Score=35.35 Aligned_cols=74 Identities=14% Similarity=0.291 Sum_probs=55.2
Q ss_pred eEEECCCeEEEEEEcC-C--CCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 54 DWMETPTAHVITLDIP-G--MKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 54 di~e~~~~~~i~~~lP-G--~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
.+.++.+...|++.|| | ++..+|.|.+.. +.|.|.-+-. ... + .=.|...|+++
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~------------~~~--------i--~G~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ------------PPI--------I--DGELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC------------ceE--------E--eCcccCccccc
Confidence 4567888899999996 3 889999999999 7888863211 111 1 22578889998
Q ss_pred CeEEEEeCC-EEEEEEeCcCc
Q 042495 131 HVKAHMKNG-ILRVTVPKLAE 150 (180)
Q Consensus 131 ~i~A~~~~G-vL~I~iPK~~~ 150 (180)
.-.=.+++| .|.|+|-|...
T Consensus 59 es~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEEEEeCCCEEEEEEEECCC
Confidence 877778886 89999999853
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.97 E-value=0.54 Score=33.36 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=59.0
Q ss_pred ceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 51 ARADWMETPTAHVITLDIP-GM-KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lP-G~-~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
..+.+.++.+...|.+.|| |. +..+|.|.+.. ..|.|.-+-.. ....+. .. .|...|+
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i---------~G--~L~~~V~ 64 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM---------EG--EFTHKIN 64 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE---------eC--cccCccc
Confidence 4688999999999999999 54 67899999999 78888754211 000111 11 5788899
Q ss_pred cCCeEEEEeCC-EEEEEEeCcC
Q 042495 129 LEHVKAHMKNG-ILRVTVPKLA 149 (180)
Q Consensus 129 ~~~i~A~~~~G-vL~I~iPK~~ 149 (180)
++.-.=.+++| .|.|+|-|..
T Consensus 65 ~des~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 65 TENSLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred CccceEEEeCCCEEEEEEEECC
Confidence 98877778886 5899999974
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=86.21 E-value=11 Score=27.93 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=51.2
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
..+.|...++ ..+.+.. ..+.+++..++ +.|.|+.+... ..-...+..... ...-.-.+.||..+..+
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCcee
Confidence 3466766444 4445555 22268888898 89999977221 001112222111 23456678999998888
Q ss_pred CeEEEEeCCEEEEE
Q 042495 131 HVKAHMKNGILRVT 144 (180)
Q Consensus 131 ~i~A~~~~GvL~I~ 144 (180)
+++....+|-+.|.
T Consensus 134 ~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 134 KIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEeccccEEEE
Confidence 99988888988875
No 43
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=81.34 E-value=1.4 Score=36.87 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=62.9
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCcc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDL 129 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 129 (180)
...+++.++.....|-+--|-+..++|.+-+++ |+|.|+-+... .+. -|.-.+.|-..|++
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~----------~~~--------~~~~~~~Ly~ev~P 236 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR----------LRL--------WNDITISLYKEVYP 236 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccc----------cch--------HHHhhhhhhhhcCc
Confidence 345778888899999999999999999999999 89999976644 111 13456677788999
Q ss_pred CCeEEEEeCCEEEEEEeCcCc
Q 042495 130 EHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK~~~ 150 (180)
+...-+.---++.|++-|...
T Consensus 237 ~~~s~k~fsK~~e~~l~KV~~ 257 (368)
T COG5091 237 DIRSIKSFSKRVEVHLRKVEM 257 (368)
T ss_pred chhhhhhcchhheehhhhhhh
Confidence 887666555788888888764
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=81.06 E-value=14 Score=28.87 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=57.4
Q ss_pred ccceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCC
Q 042495 49 ALARADWMETPTAHVITLDIP-GM-KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMS 126 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lP-G~-~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~ 126 (180)
..+.+.|..+=..+.|.+.+| |+ +..+|.|.+.. ..|.|.-+-.. -+. .=.|...
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-----------~il-----------dG~L~~~ 73 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-----------PIL-----------DGELSHS 73 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-----------cee-----------cCccccc
Confidence 345688888888999998886 77 88999999999 77777633211 111 1136677
Q ss_pred CccCCeEEEEeCCEEEEEEeCcCc
Q 042495 127 VDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 127 vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
|+.+.-.=.+++|.+.|.+-++..
T Consensus 74 vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 74 VKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred cccccceEEecCCEEEEEEeeccc
Confidence 888887788899977777766654
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=80.63 E-value=9 Score=29.83 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=58.8
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 49 ALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
..|.+-|.+..+.+.+++.|+-. .+..|.++. ..|+++|+...+ .+ .|...|.|=..||
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d----------~~--------~~~~~ief~~eId 64 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGAD----------NH--------KYENEIEFFDEID 64 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCC----------ce--------eeEEeeehhhhcC
Confidence 34668888889999999999754 456666777 689999987541 11 1456788888999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCcc
Q 042495 129 LEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
+++.+-+-. +.+...++++...
T Consensus 65 pe~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 65 PEKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred Hhhcccccc-ceEEEEEEEcccc
Confidence 998776666 6777777666543
No 46
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=78.39 E-value=4.7 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.|.-...|| .++.+.|+..+++|.|+|+--+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 366788999 9999999999999999999987653
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=77.95 E-value=4.1 Score=27.65 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=28.7
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-.+.|| .++++.|+-.+++|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 67789999 999999999999999999997654
No 48
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=76.30 E-value=4.7 Score=27.28 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
.|.-.+.|| ++.++.|+..+++|.|+|.--+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477889999 89999999999999999998654
No 49
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=76.24 E-value=10 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=30.8
Q ss_pred eEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCcc
Q 042495 115 GKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 115 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
..|.-.+.|| .+..+.|+-.++++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3577899999 79999999999999999998766544
No 50
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=76.10 E-value=6 Score=26.61 Aligned_cols=32 Identities=6% Similarity=0.131 Sum_probs=28.4
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
.|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477899999 99999999999999999998543
No 51
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=75.54 E-value=5.4 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
.|.-.+.|| +++++.|+..+.+|.|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477889999 99999999999999999998643
No 52
>PF14913 DPCD: DPCD protein family
Probab=75.42 E-value=30 Score=27.40 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=55.3
Q ss_pred ccceeeEEECCCeEEEEEE-cCCCCCCCeEEEEecC-cEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCC-
Q 042495 49 ALARADWMETPTAHVITLD-IPGMKKDNMKIEVEEN-RVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPM- 125 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~-lPG~~~~dI~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~- 125 (180)
..|-+--..+...|.-++- || ...+-.+|+++++ +.++|+..-+- |.+.|.+|+
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNKK----------------------YyKk~~IPDl 141 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNKK----------------------YYKKFSIPDL 141 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCcc----------------------ceeEecCCcH
Confidence 3444444677778888864 55 4667778888653 45777744322 668999995
Q ss_pred -----CCccCCeEEEEeCCEEEEEEeCcC
Q 042495 126 -----SVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 126 -----~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
..+.+.++..+.|..|.|+..|..
T Consensus 142 ~R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 142 DRCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred HhhCCCcchhhceeeeecCeEEEEecCcH
Confidence 247778898999999999998765
No 53
>PRK10743 heat shock protein IbpA; Provisional
Probab=73.76 E-value=11 Score=28.12 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=26.2
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-...|| +++.+.|...+++|+|+|+--+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 33456688 899999999999999999986554
No 54
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=71.59 E-value=6.6 Score=26.64 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=26.1
Q ss_pred CeEEEEEEcCCCCCCCeEEEEecCcEEEEEe
Q 042495 60 TAHVITLDIPGMKKDNMKIEVEENRVLRVSG 90 (180)
Q Consensus 60 ~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g 90 (180)
+.|.-.+.||.+..+.|+-++.+ |+|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 45777789999999999999999 9999974
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=70.49 E-value=10 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
.|.-.+.|| .++++.|+..+++|.|+|.--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377789999 999999999999999999976643
No 56
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=70.23 E-value=23 Score=23.92 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCC-EEEEEEeCcC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNG-ILRVTVPKLA 149 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~G-vL~I~iPK~~ 149 (180)
.|.-.+.|| ++..+.|+-.+.+| +|+|+--+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 477889999 79999999999865 9999987654
No 57
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.78 E-value=8.6 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeE
Q 042495 58 TPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGE 91 (180)
Q Consensus 58 ~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~ 91 (180)
....|.-++.|| +++.+.++..+.+ |.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 357899999999 7888999999999 99999853
No 58
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=69.34 E-value=12 Score=24.38 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=32.2
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEE--EeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAH--MKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~--~~~GvL~I~iP 146 (180)
|+.++|++++ +.+++.|..-. .++.||.. +... .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~------------------------l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE------------------------LSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE------------------------EEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCEe------------------------EEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 5789999999 89999988744 56777855 4444 56887777665
No 59
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=69.29 E-value=9.2 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPK 147 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK 147 (180)
.|.-.+.|| +++++.|+..+.++.|+|.--+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 477889999 9999999999999999999854
No 60
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=69.12 E-value=27 Score=27.28 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=32.3
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++++|++++ +.++|+|.+-. .++.|.-+ .++..+++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~----------------------L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE----------------------LTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE----------------------EEEEecCC------cEEEEEECCEEEEEEC
Confidence 6889999999 89999988633 45544322 4556678888887755
No 61
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=68.44 E-value=12 Score=25.91 Aligned_cols=32 Identities=6% Similarity=0.168 Sum_probs=26.9
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeE
Q 042495 60 TAHVITLDIP-GMKKDNMKIEVEENRVLRVSGE 91 (180)
Q Consensus 60 ~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~ 91 (180)
..|.=++.|| +++.+.|+-.+..+|.|+|.+-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 4677789998 9999999999984499999863
No 62
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=67.96 E-value=33 Score=26.50 Aligned_cols=45 Identities=11% Similarity=0.305 Sum_probs=31.9
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++++|++++ +.|+|+|.+-. ..+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~----------------------L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE----------------------VTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6789999999 89999988633 444443 32 3555678888888754
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=67.69 E-value=16 Score=27.48 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=26.2
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-.+.|| +++.+.|.-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44556788 899999999999999999987554
No 64
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.39 E-value=11 Score=25.00 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.0
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.|.-.+.|| ++.++.|+-.++++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 478899999 6999999999999999999877653
No 65
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=67.27 E-value=11 Score=25.46 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
.|.-.+.|| +++++.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 477899999 999999999999999999986543
No 66
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=66.02 E-value=37 Score=28.21 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=66.3
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCcc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDL 129 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 129 (180)
.-+.||+.++...+|.+..-|.-++.-.|..+. ..|.|.-.... . -..|...+.|=.-|++
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~--------g----------na~fd~d~kLwgvvnv 274 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF--------G----------NASFDLDYKLWGVVNV 274 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC--------C----------Cceeeccceeeeeech
Confidence 345789999999999999999999988888888 77877755422 0 1236677777777899
Q ss_pred CCeEEEEeCCEEEEEEeCcCcc
Q 042495 130 EHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
+...+.+-.--++|+|+|+++.
T Consensus 275 e~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 275 EESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred hhceEEeecceEEEEEeccCCC
Confidence 9999999999999999999864
No 67
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=65.60 E-value=22 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.|.-.+.|| .+.++.|+..++++.|+|+--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 367789999 8999999999999999999876543
No 68
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.16 E-value=16 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=27.7
Q ss_pred eEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 115 GKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 115 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
..|.-.+.|| +++.+.|+-.++++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3477899999 89999999999999999999877
No 69
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=65.02 E-value=26 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++|+|++++ +.|+|+|.+-. .. ..||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~----------------------l~--~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT----------------------LS--RKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE----------------------EE--EECCC-----CeEEEEeCCEEEEEcC
Confidence 6789999999 89999988643 33 45554 3455668887777754
No 70
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=64.18 E-value=16 Score=22.72 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 69 PGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 69 PG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
++++..+|.|.+.+ +.+.|+|....
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 46777789999999 89999999866
No 71
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.20 E-value=28 Score=22.14 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred eeeEE-ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEc
Q 042495 52 RADWM-ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERK 93 (180)
Q Consensus 52 ~~di~-e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~ 93 (180)
++.+. -..+.|.|++..||+..-.-+|.+..+....|+...+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 34555 4578999999999999988888887656777776654
No 72
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=14 Score=28.70 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=26.4
Q ss_pred EEEcC-CCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 65 TLDIP-GMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 65 ~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
+.-|| |++++.|.-.+..+|+|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 45677 9999999999987799999999876
No 73
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=58.63 E-value=35 Score=23.80 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=30.6
Q ss_pred ccceeeEEECCCeEEEEEEcCCC-----CCCCeEEEEecCcEEEEE
Q 042495 49 ALARADWMETPTAHVITLDIPGM-----KKDNMKIEVEENRVLRVS 89 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~-----~~~dI~V~v~~~~~L~I~ 89 (180)
..|.+.|+++++.|.|.+--+.- .++...|.-++ +.+.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 45889999999999999876654 66666777666 666665
No 74
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=57.46 E-value=48 Score=25.64 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=31.5
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++|+|++++ +.|+|+|.+- ...+.| |. .+...++++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G----------------------~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKG----------------------ELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCe----------------------EEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6889999999 8999998763 344554 53 3455668888777754
No 75
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=55.71 E-value=28 Score=27.41 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=18.0
Q ss_pred CCCeEEEEecCcEEEEEeEEcC
Q 042495 73 KDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
|++++|++++ +.|+|+|.+-.
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 6889999999 89999988643
No 76
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=55.47 E-value=38 Score=21.70 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=28.4
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEecCcEEEEEeEEcC
Q 042495 60 TAHVITLDIPG-MKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 60 ~~~~i~~~lPG-~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
+.|.+.++||+ +.+++...++.+ +.|.|+-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 56999999985 699999999999 88999966643
No 77
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=55.40 E-value=12 Score=23.91 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=12.1
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 042495 130 EHVKAHMKNGILRVTVPK 147 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK 147 (180)
..|.|.|+||||.-.=|-
T Consensus 3 ~~I~aiYe~GvlkPl~~~ 20 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPV 20 (60)
T ss_dssp --EEEEEETTEEEECS--
T ss_pred ceEEEEEECCEEEECCCC
Confidence 458999999999865333
No 78
>PRK10568 periplasmic protein; Provisional
Probab=54.96 E-value=26 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 69 PGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 69 PG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
|+++..+|+|.+.+ +.+++.|....
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 66778899999999 89999999875
No 79
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=54.74 E-value=51 Score=25.94 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++++|++++ +.|+|+|.+-. .++.| |.. ...|....++|.|.|..+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G~----------------------L~~~~--~~~--~~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYGE----------------------LTRSF--RHL--PVDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCce----------------------EEEEe--cCC--CceEEEEeCCCEEEEEeC
Confidence 7899999999 89999988633 44444 321 024566678888777755
No 80
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=51.17 E-value=65 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++|+|++++ +.|+|+|.+- ...+.| |.. +...++++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G----------------------~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKG----------------------ELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE----------------------EEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6889999999 8999998863 355555 433 445567887777654
No 81
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=49 Score=24.47 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=26.6
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 44556788 899999999999999999988765
No 82
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=49.76 E-value=65 Score=25.19 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.3
Q ss_pred CCCCCCCeEEEEecCcEEEEEeEEc
Q 042495 69 PGMKKDNMKIEVEENRVLRVSGERK 93 (180)
Q Consensus 69 PG~~~~dI~V~v~~~~~L~I~g~~~ 93 (180)
|=+.|++++|++++ +.++++|.+-
T Consensus 8 ~i~~P~gV~V~i~~-~~v~vkGpkG 31 (178)
T COG0097 8 PIVIPAGVTVSIEG-QVVTVKGPKG 31 (178)
T ss_pred cEecCCCeEEEEec-cEEEEECCCc
Confidence 33448999999998 8999998763
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=48.07 E-value=9.5 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=17.6
Q ss_pred CCCCccCCeEEEEeCCEEEEEEe
Q 042495 124 PMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 124 P~~vd~~~i~A~~~~GvL~I~iP 146 (180)
-+.+..+.--+.|.||||+|.|+
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HhhcCccccccccccceEEEEec
Confidence 34454556668899999999997
No 84
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=43.90 E-value=1.2e+02 Score=21.77 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=30.6
Q ss_pred EEEEEEECCCCC-ccCCeEEEEeCCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 116 KFWRQFRMPMSV-DLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 116 ~f~r~~~LP~~v-d~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
.|+.-|....++ +...|+-.+++.+|....|+.. .++|.|+.++.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~ 90 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKD 90 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCC
Confidence 455566666666 5666777788887776666664 46899987654
No 85
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=43.08 E-value=54 Score=21.37 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.2
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
..-.|.+|..++.+.+...+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 556778999999999999999999999986
No 86
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.38 E-value=13 Score=32.90 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=55.6
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC-c
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV-D 128 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v-d 128 (180)
.|.+.+..+++.+.|.+..|-.+...+++...+ +.+..++ |.|--++.+|..+ +
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~~------------------------~pyflrl~~p~~~~~ 57 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFSA------------------------GPYFLRLAGPGMVED 57 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhcc------------------------chhHHhhcCcchhhh
Confidence 366888999999999999998888888888877 6665552 2344566777665 3
Q ss_pred cCCeEEEE--eCCEEEEEEeCcCc
Q 042495 129 LEHVKAHM--KNGILRVTVPKLAE 150 (180)
Q Consensus 129 ~~~i~A~~--~~GvL~I~iPK~~~ 150 (180)
-..-.|+| ++|...|.+||..+
T Consensus 58 d~~~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 58 DARPNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred hccccCccccccceeEEeecCCCc
Confidence 33455655 48999999999654
No 87
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=38.81 E-value=1.3e+02 Score=23.78 Aligned_cols=77 Identities=10% Similarity=0.228 Sum_probs=54.1
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEE-ECCCCCccCC
Q 042495 53 ADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQF-RMPMSVDLEH 131 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~-~LP~~vd~~~ 131 (180)
+-|-++++-..+-+.|-|+..++++|.++. +.|-|..+--+ .++ |.-.+ .|-..|++++
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-------GK~------------y~~~vnnLlk~I~vEk 136 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-------GKN------------YRMIVNNLLKPISVEK 136 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-------Ccc------------eeeehhhhccccChhh
Confidence 456677888889999999999999999999 77777754332 111 22222 3446788888
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 042495 132 VKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK~~ 149 (180)
-.-..+-..+.|.+-|.+
T Consensus 137 s~~kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 137 SSKKVKTDTVLILCKKVE 154 (224)
T ss_pred cccccccceEEEeehhhh
Confidence 778888777777775443
No 88
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.59 E-value=77 Score=22.08 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=27.4
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEe
Q 042495 53 ADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSG 90 (180)
Q Consensus 53 ~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g 90 (180)
+.+.+.+| .|....||++ .|+|+.++ +.|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEec
Confidence 67888888 7778899986 58888888 8899987
No 89
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=36.08 E-value=57 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 69 PGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 69 PG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
.|+...+|.|.+++ +.++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 48888899999999 99999999876
No 90
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.74 E-value=1.6e+02 Score=26.52 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=38.0
Q ss_pred ceEEEEEEECCCCCccCCeEEEEe---CCEEEEEEeCcCccccCCCcEEEeccCCCCCCccc
Q 042495 114 FGKFWRQFRMPMSVDLEHVKAHMK---NGILRVTVPKLAEEKKRQPKVINIDEESGNSSNED 172 (180)
Q Consensus 114 ~g~f~r~~~LP~~vd~~~i~A~~~---~GvL~I~iPK~~~~~~~~~r~I~I~~~~~~~~~~~ 172 (180)
.|.|.-.=-.|.+--.-+|...|+ ||||.|+.--+. .....+|.|......-+.++
T Consensus 486 LGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKg---tg~~~kitItNd~~rLt~Ed 544 (663)
T KOG0100|consen 486 LGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKG---TGKKEKITITNDKGRLTPED 544 (663)
T ss_pred cccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccC---CCCcceEEEecCCCCCCHHH
Confidence 566665554455545567777775 999999986664 45678899998777544343
No 91
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=34.23 E-value=54 Score=23.27 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.5
Q ss_pred CeEEEEeCCEEEEEEeCc
Q 042495 131 HVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~ 148 (180)
.+.+.+.+|||+|.++..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 578999999999999654
No 92
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=33.39 E-value=46 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.3
Q ss_pred CCeEEEEeCCEEEEEEeCc
Q 042495 130 EHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK~ 148 (180)
..+.+.+.+|||+|+++..
T Consensus 28 ~d~D~e~~~gVLti~f~~~ 46 (105)
T cd00503 28 ADIDVETQGGVLTLTFGNG 46 (105)
T ss_pred cCEeeeccCCEEEEEECCC
Confidence 4577888899999999833
No 93
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=33.25 E-value=1.7e+02 Score=23.67 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=26.3
Q ss_pred EEEecCcEEEEEeEEcCCCCccccccCceEE------EEeeeceEEEEEEECCC
Q 042495 78 IEVEENRVLRVSGERKSNDYYKEGVEGEKWH------KAERTFGKFWRQFRMPM 125 (180)
Q Consensus 78 V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~er~~g~f~r~~~LP~ 125 (180)
|.+++ +.|+|++.+.... .......+. .....||.|+-++.||.
T Consensus 60 v~v~~-G~L~i~a~~~~~~---~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVED-GNLVLSATRHPGT---ELGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEEC-CEEEEEEEcCCCC---cCCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 56678 7899998876510 000111121 12236789999999995
No 94
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=32.09 E-value=46 Score=23.63 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.5
Q ss_pred eEEEEeCCEEEEEEeCc
Q 042495 132 VKAHMKNGILRVTVPKL 148 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK~ 148 (180)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 66888999999999854
No 95
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=31.14 E-value=45 Score=23.53 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.7
Q ss_pred CeEEEEeCCEEEEEEeCc
Q 042495 131 HVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~ 148 (180)
.+.+.+.+|||+|+++..
T Consensus 26 d~D~e~~~gVLti~f~~~ 43 (102)
T TIGR03421 26 DIDCERAGGVLTLTFENG 43 (102)
T ss_pred CeeeecCCCEEEEEECCC
Confidence 367788899999999853
No 96
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=28.09 E-value=1.4e+02 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=19.2
Q ss_pred EECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 121 FRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 121 ~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
+.=|..|-+........+|-+++++|+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 3457777777655666788889999864
No 97
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.97 E-value=12 Score=31.84 Aligned_cols=70 Identities=17% Similarity=0.385 Sum_probs=48.8
Q ss_pred EECCCeEEEEEEcCCCCC-CCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 56 METPTAHVITLDIPGMKK-DNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 56 ~e~~~~~~i~~~lPG~~~-~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
.|..+.....++||+... ...+..+.+ ..|.|.+.+. .|.-...+|..++.+...|
T Consensus 236 ~e~p~~i~~e~~lp~~n~~~~~sl~v~e-~ri~i~~~~~----------------------~y~l~~~~~~~~~~~~~~a 292 (310)
T KOG4356|consen 236 DEAPDEIEAEIDLPNYNSMQEFSLLVGE-DRIVIETRKQ----------------------GYRLNLNIPYIIDQDRAPA 292 (310)
T ss_pred ccCcchhhhhhhcccchhhhccccccCC-cceEeccCcc----------------------ceeeccccccccCcccchh
Confidence 455567777888888866 234555554 5666665442 2566778999999999999
Q ss_pred EEeC--CEEEEEEeCc
Q 042495 135 HMKN--GILRVTVPKL 148 (180)
Q Consensus 135 ~~~~--GvL~I~iPK~ 148 (180)
.|+. --|.|++|-.
T Consensus 293 ~Fd~~~~al~i~~P~~ 308 (310)
T KOG4356|consen 293 LFDKTTKALHITIPVV 308 (310)
T ss_pred hHHHHHHhhheecccc
Confidence 9964 4888888854
No 98
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=27.95 E-value=1.2e+02 Score=20.26 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=26.9
Q ss_pred cCceEEEEeeeceEEEEEEECCCCCccCC-eEEEEeCC-EEEEEE
Q 042495 103 EGEKWHKAERTFGKFWRQFRMPMSVDLEH-VKAHMKNG-ILRVTV 145 (180)
Q Consensus 103 ~~~~~~~~er~~g~f~r~~~LP~~vd~~~-i~A~~~~G-vL~I~i 145 (180)
.-+.|..+...+--|.|.|.+|+...+.. +.-.|.+| |-.|.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 34555555556667899999999986664 88888877 444543
No 99
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=26.39 E-value=1e+02 Score=19.29 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.5
Q ss_pred EEcCCCCC-CCeEEEEecCcEEEEE
Q 042495 66 LDIPGMKK-DNMKIEVEENRVLRVS 89 (180)
Q Consensus 66 ~~lPG~~~-~dI~V~v~~~~~L~I~ 89 (180)
++-.||.. +.|+|++.+ +.|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEEC-CEEEEe
Confidence 34568865 469999999 788886
No 100
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=26.16 E-value=2.2e+02 Score=19.48 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=27.8
Q ss_pred ceEEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 042495 114 FGKFWRQFRMPMSVDLEHVKAHMKNGILRVTV 145 (180)
Q Consensus 114 ~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~i 145 (180)
.....-.|.||.++....+...+...-|+|.+
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 34466788999999999999999999999998
No 101
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=26.13 E-value=2.4e+02 Score=22.02 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEE-EeeeceEEEEEEECCCC
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHK-AERTFGKFWRQFRMPMS 126 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~er~~g~f~r~~~LP~~ 126 (180)
++++.| .+ +.|+|++.+.... ...--...+.. .-..+|.|+-++.+|..
T Consensus 31 ~~nv~v--~~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SD-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--EC-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 455544 46 6788887764310 00011222222 12368899999999853
No 102
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=25.90 E-value=95 Score=24.37 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=13.2
Q ss_pred CCeEEEEecCcEEEEEeEEcC
Q 042495 74 DNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 74 ~dI~V~v~~~~~L~I~g~~~~ 94 (180)
..+.+..+. +.+.|+|..+.
T Consensus 131 ~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 131 TSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeEEEccCC-CEEEEEEEEEE
Confidence 456666556 67778877654
No 103
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=25.78 E-value=53 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=17.7
Q ss_pred CCCCCeEEEEecCcEEEEEeEEc
Q 042495 71 MKKDNMKIEVEENRVLRVSGERK 93 (180)
Q Consensus 71 ~~~~dI~V~v~~~~~L~I~g~~~ 93 (180)
++++.|.|.... +.|.|+|+.=
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceE
Confidence 567888888888 8899998763
No 104
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.70 E-value=3.4e+02 Score=21.57 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=48.6
Q ss_pred CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 70 GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 70 G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
-+.|. --++++|.+.++|-|-.-. .-.+++.++..-...|.-..-+..... ..+-|.|.+..+.|.+.+-
T Consensus 111 k~sPK-~i~WiDD~~L~vIIG~a~G-----TvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~~gd~L~Lki~ 180 (200)
T PF15525_consen 111 KYSPK-YIEWIDDNNLAVIIGYAHG-----TVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEKNGDNLNLKIN 180 (200)
T ss_pred ccCCc-eeEEecCCcEEEEEccccc-----eEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEEeCCEEEEEEE
Confidence 44566 4467888677778776544 345677777767777777776666654 6667999999998877764
No 105
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=25.01 E-value=52 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEeCc
Q 042495 133 KAHMKNGILRVTVPKL 148 (180)
Q Consensus 133 ~A~~~~GvL~I~iPK~ 148 (180)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5677899999999644
No 106
>PRK14290 chaperone protein DnaJ; Provisional
Probab=24.68 E-value=4.5e+02 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=30.8
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
....|+|.+.+--..+.-..-+|.++|.+|... ....+|.|...+-
T Consensus 274 ~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~----~~g~~iri~g~G~ 319 (365)
T PRK14290 274 VDQKINFPQAALGGEIEIKLFREKYNLKIPEGT----QPGEVLKIKGAGM 319 (365)
T ss_pred EEEEeCHHHHhCCCEEEEEcCCceEEEEECCcc----CCCcEEEECCCCC
Confidence 344566666666666666677899999999653 2356777765543
No 107
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=22.02 E-value=1.1e+02 Score=23.55 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=12.6
Q ss_pred CCeEEEEecCcEEEEEeEEcC
Q 042495 74 DNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 74 ~dI~V~v~~~~~L~I~g~~~~ 94 (180)
++|.+...+ +.+.|+|..+.
T Consensus 131 ~~i~~d~~~-~~V~V~G~l~t 150 (187)
T PF05309_consen 131 KSIEVDPET-LTVFVTGTLKT 150 (187)
T ss_pred eEEEEecCC-CEEEEEEEEEE
Confidence 556666566 67777777543
No 108
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=21.94 E-value=1e+02 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=16.5
Q ss_pred eCCEEEEEEeCcCccccCCCcEEEecc
Q 042495 137 KNGILRVTVPKLAEEKKRQPKVINIDE 163 (180)
Q Consensus 137 ~~GvL~I~iPK~~~~~~~~~r~I~I~~ 163 (180)
.+|.|.+.+||+.-+ ..++.++.
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~ 31 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEK 31 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeec
Confidence 367899999999755 45566653
No 109
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=21.22 E-value=4.1e+02 Score=20.78 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=29.1
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 57 e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
..++.|+=++.||--..+-+++++.+ ++|.|.-++..
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nN-gILEIri~~~~ 169 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNN-GILEIRIRRTE 169 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeC-ceEEEEEeecC
Confidence 33445666889986667788999999 99999988876
No 110
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=21.05 E-value=76 Score=21.55 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.6
Q ss_pred CCCCCCCeEEEEecCcEEEEEeEEc
Q 042495 69 PGMKKDNMKIEVEENRVLRVSGERK 93 (180)
Q Consensus 69 PG~~~~dI~V~v~~~~~L~I~g~~~ 93 (180)
=-++.+.|.|.... +.|.|+|+.=
T Consensus 39 ~~y~~~~I~l~t~~-G~l~I~G~~L 62 (85)
T TIGR02856 39 VVFSPEEVKLNSTN-GKITIEGKNF 62 (85)
T ss_pred EEECCCEEEEEcCc-eEEEEEcccE
Confidence 34678889999998 8999998863
No 111
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=20.48 E-value=2.5e+02 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=12.1
Q ss_pred CCCeEEEEe-cCcEEEEEeEEc
Q 042495 73 KDNMKIEVE-ENRVLRVSGERK 93 (180)
Q Consensus 73 ~~dI~V~v~-~~~~L~I~g~~~ 93 (180)
++++ .|+ + +.|+|++.+.
T Consensus 45 ~~n~--~v~~d-G~L~I~a~~~ 63 (259)
T cd02182 45 TANV--QLSGN-GTLQITPLRD 63 (259)
T ss_pred CcCE--EEcCC-CeEEEEEEec
Confidence 3444 455 6 7899998775
Done!