Query 042495
Match_columns 180
No_of_seqs 164 out of 1548
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gme_A Heat shock protein 16.9 100.0 2.9E-31 9.9E-36 200.9 12.5 143 15-162 8-150 (151)
2 4eld_A MJ16.5-P1, small heat s 100.0 3.4E-29 1.2E-33 191.3 12.7 105 50-162 56-161 (161)
3 3gla_A Low molecular weight he 100.0 1.5E-28 5E-33 173.6 14.0 97 49-150 3-99 (100)
4 3aab_A Putative uncharacterize 99.9 1.3E-27 4.4E-32 175.0 10.7 95 49-151 23-118 (123)
5 4fei_A Heat shock protein-rela 99.9 5.5E-27 1.9E-31 166.4 11.1 94 48-151 4-97 (102)
6 3l1e_A Alpha-crystallin A chai 99.9 1.3E-25 4.5E-30 160.4 12.5 101 51-163 3-106 (106)
7 2klr_A Alpha-crystallin B chai 99.9 2E-25 6.9E-30 172.5 10.2 102 52-167 65-167 (175)
8 2wj5_A Heat shock protein beta 99.9 1.8E-24 6.2E-29 153.2 11.1 95 52-161 3-98 (101)
9 3q9p_A Heat shock protein beta 99.9 2.3E-23 7.8E-28 143.1 10.8 83 55-149 2-85 (85)
10 2y1y_A Alpha-crystallin B chai 99.9 1.3E-22 4.6E-27 140.6 10.4 84 56-151 2-86 (90)
11 2bol_A TSP36, small heat shock 99.9 2.2E-22 7.4E-27 168.1 11.5 101 49-166 97-202 (314)
12 2bol_A TSP36, small heat shock 99.8 4.1E-21 1.4E-25 160.4 8.7 88 52-148 222-313 (314)
13 1rl1_A Suppressor of G2 allele 99.1 2.7E-10 9.1E-15 81.4 8.7 83 49-151 8-90 (114)
14 2xcm_C SGT1-like protein, cyto 99.1 2.8E-10 9.5E-15 78.0 7.9 81 50-150 2-82 (92)
15 2k8q_A Protein SHQ1; beta-sand 98.5 2.5E-07 8.6E-12 67.7 6.7 77 50-151 3-84 (134)
16 3eud_A Protein SHQ1; CS domain 98.5 2.4E-06 8.3E-11 60.7 11.2 80 47-151 14-98 (115)
17 3igf_A ALL4481 protein; two-do 98.1 6.5E-06 2.2E-10 70.0 7.8 72 51-149 298-370 (374)
18 1x5m_A Calcyclin-binding prote 98.0 0.00011 3.9E-09 53.0 11.4 81 50-150 20-104 (127)
19 1wh0_A Ubiquitin carboxyl-term 97.9 6.3E-05 2.2E-09 55.1 9.3 92 49-151 18-113 (134)
20 1wgv_A KIAA1068 protein; CS do 97.8 0.00032 1.1E-08 50.4 10.6 81 50-150 19-102 (124)
21 3qor_A Nuclear migration prote 97.7 0.00026 8.9E-09 50.7 9.0 79 49-150 15-97 (121)
22 1wfi_A Nuclear distribution ge 97.6 0.00016 5.6E-09 52.4 7.4 78 50-150 7-88 (131)
23 1ejf_A Progesterone receptor P 97.6 0.00044 1.5E-08 49.7 9.1 78 52-150 5-82 (125)
24 2o30_A Nuclear movement protei 97.5 0.0012 4.1E-08 47.8 10.3 76 50-149 4-80 (131)
25 2rh0_A NUDC domain-containing 97.5 0.0007 2.4E-08 50.7 9.2 78 49-150 12-91 (157)
26 2kmw_A Uncharacterized protein 97.3 0.00064 2.2E-08 50.6 7.2 78 50-150 4-82 (150)
27 2cg9_X CO-chaperone protein SB 97.2 0.00016 5.4E-09 52.8 3.0 84 50-149 6-97 (134)
28 3q9p_A Heat shock protein beta 83.4 2.1 7.3E-05 27.9 4.9 33 116-149 8-40 (85)
29 3gla_A Low molecular weight he 81.0 5.5 0.00019 26.4 6.4 34 116-150 15-48 (100)
30 4eld_A MJ16.5-P1, small heat s 77.1 9.1 0.00031 27.8 7.1 33 117-150 68-100 (161)
31 2y1y_A Alpha-crystallin B chai 76.5 3.7 0.00013 26.9 4.3 33 116-149 7-39 (90)
32 3l1e_A Alpha-crystallin A chai 75.4 4.7 0.00016 27.3 4.8 32 116-148 13-44 (106)
33 2wj5_A Heat shock protein beta 73.4 4.7 0.00016 27.1 4.3 32 117-149 13-44 (101)
34 4fei_A Heat shock protein-rela 72.7 7 0.00024 26.1 5.1 33 61-94 62-95 (102)
35 2cql_A OK/SW-CL.103, 60S ribos 71.5 8.9 0.0003 26.0 5.3 19 73-92 20-38 (100)
36 3aab_A Putative uncharacterize 68.1 10 0.00035 26.2 5.2 33 117-150 36-69 (123)
37 1gme_A Heat shock protein 16.9 66.2 22 0.00076 25.5 6.9 33 117-150 55-88 (151)
38 3v2d_H 50S ribosomal protein L 65.5 10 0.00034 28.6 5.0 44 73-146 12-55 (180)
39 3j21_F 50S ribosomal protein L 65.3 11 0.00039 28.4 5.3 45 73-146 14-58 (184)
40 1nkw_E 50S ribosomal protein L 65.2 16 0.00054 28.3 6.1 46 73-148 39-84 (212)
41 1rl6_A Protein (ribosomal prot 65.0 14 0.00048 27.7 5.7 46 73-148 11-56 (177)
42 2klr_A Alpha-crystallin B chai 58.2 11 0.00039 28.0 4.1 32 117-149 75-106 (175)
43 1vq8_E 50S ribosomal protein L 56.4 11 0.00037 28.3 3.8 47 73-148 9-55 (178)
44 3u5e_H L8, RP24, YL11, 60S rib 55.9 35 0.0012 25.8 6.6 46 73-147 13-59 (191)
45 2nwt_A UPF0165 protein AF_2212 53.6 9.9 0.00034 24.1 2.6 17 130-146 3-19 (69)
46 3iz5_F 60S ribosomal protein L 50.5 18 0.00062 27.4 4.2 46 73-147 13-60 (190)
47 2zkr_e 60S ribosomal protein L 50.0 28 0.00095 26.4 5.2 52 68-148 8-62 (192)
48 4a17_E RPL9, 60S ribosomal pro 48.9 24 0.00083 26.6 4.7 21 72-93 12-32 (188)
49 3bbo_I Ribosomal protein L6; l 46.5 16 0.00054 28.5 3.3 47 73-148 54-100 (223)
50 3r8s_G 50S ribosomal protein L 40.0 22 0.00076 26.5 3.2 43 73-145 11-53 (176)
51 1ew4_A CYAY protein; friedreic 34.3 22 0.00075 24.3 2.1 18 131-148 29-46 (106)
52 1n91_A ORF, hypothetical prote 33.4 72 0.0025 21.8 4.7 38 55-94 8-46 (108)
53 3oeq_A Frataxin homolog, mitoc 30.8 37 0.0013 23.9 2.9 17 132-148 49-65 (123)
54 2o30_A Nuclear movement protei 30.1 70 0.0024 22.1 4.4 31 115-145 14-44 (131)
55 1q5l_A Chaperone protein DNAK; 28.6 1.2E+02 0.0042 21.0 5.5 32 130-164 98-132 (135)
56 2ks0_A Uncharacterized protein 27.0 38 0.0013 21.4 2.2 23 71-94 18-40 (71)
57 2uwa_A Cellulase; glycoside hy 26.5 1.4E+02 0.0048 23.5 6.0 42 73-126 32-74 (274)
58 2kgs_A Uncharacterized protein 26.5 44 0.0015 23.4 2.7 26 68-94 2-27 (132)
59 3qqz_A Putative uncharacterize 26.0 2.3E+02 0.0078 21.9 7.8 65 67-144 21-86 (255)
60 2hyk_A Beta-1,3-glucanase; fam 25.3 77 0.0026 24.2 4.2 44 79-126 53-99 (245)
61 3dob_A Heat shock 70 kDa prote 24.8 1.6E+02 0.0055 20.9 5.6 34 130-166 81-117 (152)
62 2gjh_A Designed protein; oblig 24.4 56 0.0019 19.2 2.4 23 71-94 30-52 (62)
63 3h0x_A 78 kDa glucose-regulate 24.0 1.9E+02 0.0064 20.5 5.8 34 130-166 81-117 (152)
64 3t3l_A Frataxin, mitochondrial 22.4 53 0.0018 23.2 2.4 17 130-146 40-56 (129)
65 2op6_A Heat shock 70 kDa prote 21.3 2E+02 0.0067 20.1 5.5 42 52-93 48-102 (152)
66 3rd4_A Uncharacterized protein 20.7 59 0.002 22.0 2.3 27 56-82 32-58 (100)
67 4awd_A Beta-porphyranase; hydr 20.7 1.8E+02 0.0062 23.6 5.7 50 72-126 85-145 (324)
No 1
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.97 E-value=2.9e-31 Score=200.95 Aligned_cols=143 Identities=42% Similarity=0.703 Sum_probs=111.2
Q ss_pred CCCccccCCCCCcchhcccCcccccCCcccccccccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 15 PFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 15 ~~fd~~~~~~~dpf~~~~~~~~~~~~~~~~~~~~~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
++|+.++++|.|||..+.++...+..........+.|++||+|++++|+|.++|||+++++|+|++.+++.|+|+|+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~ 87 (151)
T 1gme_A 8 NVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTK 87 (151)
T ss_dssp CCBCTTCGGGSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCC
T ss_pred cccCchHhhhhchhhhhhhhcccccccccccccccCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEcc
Confidence 45555554344777544332222222222122446789999999999999999999999999999954389999999987
Q ss_pred CCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCccccCCCcEEEec
Q 042495 95 NDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162 (180)
Q Consensus 95 ~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 162 (180)
+.+.++..|+++||.+|.|.|+|.||.+||.++|+|+|+||||+|++||..++ ..+.++|+|+
T Consensus 88 ----~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~~-~~~~~~I~I~ 150 (151)
T 1gme_A 88 ----EKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVK-KPEVKAIQIS 150 (151)
T ss_dssp ----CCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCCCC-TTCCCCCCCC
T ss_pred ----ccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEEccCcC-CCCCeEeeeC
Confidence 45556789999999999999999999999999999999999999999999865 3345677764
No 2
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.96 E-value=3.4e-29 Score=191.29 Aligned_cols=105 Identities=23% Similarity=0.356 Sum_probs=95.4
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEee-eceEEEEEEECCCCCc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAER-TFGKFWRQFRMPMSVD 128 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er-~~g~f~r~~~LP~~vd 128 (180)
.+++||+|++++|+|+++|||+++++|+|++++ +.|+|+|+++. +...++..|+++|| .+|.|.|+|.||.+||
T Consensus 56 ~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~-~~L~I~g~~~~----~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd 130 (161)
T 4eld_A 56 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSP----LMITESERIIYSEIPEEEEIYRTIKLPATVK 130 (161)
T ss_dssp CCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCC----CCCCSSCEEEEECSCCCCEEEEEEECSSCBC
T ss_pred ccceeEEEeCCEEEEEEECCCCChHhEEEEEEC-CEEEEEEEEcc----cccCCCceEEEEEeeccccEEEEEECCCCcc
Confidence 344999999999999999999999999999999 89999999987 44456678999999 9999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCccccCCCcEEEec
Q 042495 129 LEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 162 (180)
.++|+|+|+||||+|++||.+.+ ++|+|+|+
T Consensus 131 ~~~i~A~~~nGvL~I~lpK~~~~---~~r~I~Ie 161 (161)
T 4eld_A 131 EENASAKFENGVLSVILPKAESS---IKKGINIE 161 (161)
T ss_dssp GGGCEEEEETTEEEEEEEBCGGG---SCCCCCCC
T ss_pred cccEEEEEECCEEEEEEEcCCCC---CCcEeecC
Confidence 99999999999999999998754 47888874
No 3
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.96 E-value=1.5e-28 Score=173.62 Aligned_cols=97 Identities=31% Similarity=0.631 Sum_probs=90.3
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 49 ALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
+.|++||+|++++|+|.++|||+++++|+|++++ +.|+|+|+++. +...+...|+++||.+|.|.|+|.||.+||
T Consensus 3 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~----~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 77 (100)
T 3gla_A 3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKS----ESSTETERFSRIERRYGSFHRRFALPDSAD 77 (100)
T ss_dssp SCCCEEEEECSSEEEEEEECTTSCGGGCEEEEET-TEEEEEEEECC----GGGSSGGGEEEECCCCEEEEEEEECCTTBC
T ss_pred ccCcEEEEECCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEEcC----cCccCCccEEEEeecceEEEEEEECCCCcC
Confidence 6789999999999999999999999999999999 89999999987 555677889999999999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCc
Q 042495 129 LEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.++|+|+|+||+|+|++||.++
T Consensus 78 ~~~i~A~~~~GvL~I~~pK~~~ 99 (100)
T 3gla_A 78 ADGITAAGRNGVLEIRIPKRPA 99 (100)
T ss_dssp TTSCEEEEETTEEEEEEEBC--
T ss_pred hHHeEEEEeCCEEEEEEecCCC
Confidence 9999999999999999999864
No 4
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.95 E-value=1.3e-27 Score=174.96 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=87.7
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 49 ALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
+.|++||++++++|+|.++|||+++++|+|++.+++.|+|+|+++. +. +..|+++||.+ .|.|+|.||.+||
T Consensus 23 ~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~----~~---~~~~~~~Er~~-~f~R~~~LP~~vd 94 (123)
T 3aab_A 23 VYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI----TE---PGVKYLTQRPK-YVRKVIRLPYNVA 94 (123)
T ss_dssp HCSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCC----CC---CSCEEEECSCS-EEEEEEECSSEEC
T ss_pred CCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEec----cC---CCeEEEEEEeE-EEEEEEECCCCcC
Confidence 4588999999999999999999999999999988569999999876 22 67899999999 9999999999999
Q ss_pred cCCe-EEEEeCCEEEEEEeCcCcc
Q 042495 129 LEHV-KAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 129 ~~~i-~A~~~~GvL~I~iPK~~~~ 151 (180)
.++| +|+|+||+|+|++||....
T Consensus 95 ~~~i~~A~~~~GvL~I~lPK~~~~ 118 (123)
T 3aab_A 95 KDAEISGKYENGVLTIRIPIAGTS 118 (123)
T ss_dssp TTCCCEEEEETTEEEEEEEGGGEE
T ss_pred cchhCeeEEcCCEEEEEEEcCCCC
Confidence 9999 9999999999999999754
No 5
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.94 E-value=5.5e-27 Score=166.35 Aligned_cols=94 Identities=30% Similarity=0.459 Sum_probs=87.5
Q ss_pred cccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 48 LALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 48 ~~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
.+.|++||+|++++|+|.++|||+++++|+|++++ +.|+|+|+++. ...|+++||.+|.|.|+|.||.+|
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~---------~~~~~~~er~~g~f~R~~~LP~~v 73 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDG-GQLTVSGERPG---------TEHLLRSERPSGRFVRELAFPEPV 73 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEET-TEEEEEEEECC---------CSSCSSCCSEEEEEEEEEECSSCB
T ss_pred cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEEC-CEEEEEEEEec---------CCCEEEEEEeccEEEEEEECCCCc
Confidence 36789999999999999999999999999999999 89999999854 257888999999999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeCcCcc
Q 042495 128 DLEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 128 d~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
|.++|+|+|+||+|+|++||.++.
T Consensus 74 d~~~i~A~~~~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 74 RPASGVASLAGGVLTVRFEKLRPT 97 (102)
T ss_dssp CTTCCEEEEETTEEEEEEEBSSCC
T ss_pred chhHcEEEEECCEEEEEEEccCcc
Confidence 999999999999999999999754
No 6
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.93 E-value=1.3e-25 Score=160.40 Aligned_cols=101 Identities=19% Similarity=0.439 Sum_probs=86.8
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
...+|+|++++|+|.++||||++++|+|++++ +.|+|+|++.. . .+...|+++| |.|+|.||.+||.+
T Consensus 3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----F~R~~~LP~~vd~~ 70 (106)
T 3l1e_A 3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNE----R--QDDHGYISRE-----FHRRYRLPSNVDQS 70 (106)
T ss_dssp CSEEEEECSSEEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEE----E--ETTTEEEEEE-----EEEEEECCTTBCTT
T ss_pred CceEEEEcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcc----c--cCCCCEEEEE-----EEEEEECCCCcChh
Confidence 35899999999999999999999999999999 89999999864 2 2334566543 99999999999999
Q ss_pred CeEEEE-eCCEEEEEEeCcCccc--cCCCcEEEecc
Q 042495 131 HVKAHM-KNGILRVTVPKLAEEK--KRQPKVINIDE 163 (180)
Q Consensus 131 ~i~A~~-~~GvL~I~iPK~~~~~--~~~~r~I~I~~ 163 (180)
+|+|.| +||+|+|++||..++. ..++|+|+|++
T Consensus 71 ~i~A~~s~~GvL~I~~PK~~~~~~~~~~~r~I~I~r 106 (106)
T 3l1e_A 71 ALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSR 106 (106)
T ss_dssp SCEEEECTTSEEEEEEEBCCCCTTTTSSSCCCCCCC
T ss_pred HcEEEECCCCEEEEEEEccCcccccCCCCeEeeecC
Confidence 999999 8999999999998752 24789999864
No 7
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.92 E-value=2e-25 Score=172.51 Aligned_cols=102 Identities=21% Similarity=0.403 Sum_probs=73.8
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
.+||+|++++|+|.++||||++++|+|++.+ +.|+|+|+++. + .++.+|+++| |.|+|.||.+||.++
T Consensus 65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~re-----F~R~~~LP~~Vd~~~ 132 (175)
T 2klr_A 65 LSEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEE----R--QDEHGFISRE-----FHRKYRIPADVDPLT 132 (175)
T ss_dssp ----CCCCSEEEEEECCSSCCGGGEEEEEET-TEEEEEEEEEE----E--EETTEEEEEE-----EEEEEECTTTCCTTT
T ss_pred ceEEEEcCCeEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcc----c--ccCCceEEEE-----EEEEEECCCCcChhH
Confidence 4799999999999999999999999999999 89999999865 2 2345677655 999999999999999
Q ss_pred eEEEE-eCCEEEEEEeCcCccccCCCcEEEeccCCCC
Q 042495 132 VKAHM-KNGILRVTVPKLAEEKKRQPKVINIDEESGN 167 (180)
Q Consensus 132 i~A~~-~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~~ 167 (180)
|+|+| +||||+|++||.+.. ...|+|+|+..+..
T Consensus 133 i~A~~s~dGvL~I~lPK~~~~--~~~r~I~I~~~~~~ 167 (175)
T 2klr_A 133 ITSSLSSDGVLTVNGPRKQVS--GPERTIPITREEKP 167 (175)
T ss_dssp CEEEECTTSCEEEEEECC-------------------
T ss_pred eEEEEcCCCEEEEEEECCCCC--CCCeEEEEecCCcc
Confidence 99999 799999999998754 34699999876543
No 8
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.91 E-value=1.8e-24 Score=153.18 Aligned_cols=95 Identities=17% Similarity=0.307 Sum_probs=81.4
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
.+||+|++++|+|.++|||+++++|+|++++ +.|+|+|+++. + .++..|+++| |.|+|.||.+||.++
T Consensus 3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----F~R~~~LP~~vd~~~ 70 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEE----R--PDEHGFIARE-----FHRRYRLPPGVDPAA 70 (101)
T ss_dssp CCCCCCCSSCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEE----C--SSTTCCEEEE-----EEEEEECCTTBCTTC
T ss_pred cEEEEEeCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEec----c--cCCCCEEEEE-----EEEEEECCCCcChhH
Confidence 4899999999999999999999999999999 89999999976 2 2345676655 999999999999999
Q ss_pred eEEEE-eCCEEEEEEeCcCccccCCCcEEEe
Q 042495 132 VKAHM-KNGILRVTVPKLAEEKKRQPKVINI 161 (180)
Q Consensus 132 i~A~~-~~GvL~I~iPK~~~~~~~~~r~I~I 161 (180)
|+|.| +||+|+|++||...+ +++.+.|
T Consensus 71 i~A~~s~nGvL~I~lPK~~~~---~~~~~~i 98 (101)
T 2wj5_A 71 VTSALSPEGVLSIQATPASAQ---ASLPSPP 98 (101)
T ss_dssp CEEEECTTSEEEEEECBCCCC---CSSCC--
T ss_pred CEEEECCCCEEEEEEECCCcC---CCCCCcc
Confidence 99999 899999999999765 3444444
No 9
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.90 E-value=2.3e-23 Score=143.10 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=70.2
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEE
Q 042495 55 WMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134 (180)
Q Consensus 55 i~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A 134 (180)
+.|++++|+|.++||||++++|+|++++ +.|+|+|+++. ... ... ..+|+|.|+|.||.+||.++|+|
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~~--~~~-----~~~~~F~R~~~LP~~vd~~~i~A 69 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGKHAA----RQD--EHG-----YISRCFTRKYTLPPGVDPTQVSS 69 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEET-TEEEEEEEEC------------------CCCEEEEEEEECCTTCCGGGCEE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcc----ccC--CCC-----EEEEEEEEEEECCCCcChHHcEE
Confidence 3589999999999999999999999999 89999999876 211 122 23678999999999999999999
Q ss_pred EEe-CCEEEEEEeCcC
Q 042495 135 HMK-NGILRVTVPKLA 149 (180)
Q Consensus 135 ~~~-~GvL~I~iPK~~ 149 (180)
.|+ ||||+|++||.+
T Consensus 70 ~~~~~GvL~I~lPK~k 85 (85)
T 3q9p_A 70 SLSPEGTLTVEAPMPK 85 (85)
T ss_dssp EECTTSEEEEEEECCC
T ss_pred EECCCCEEEEEEEcCC
Confidence 998 999999999963
No 10
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.88 E-value=1.3e-22 Score=140.61 Aligned_cols=84 Identities=23% Similarity=0.458 Sum_probs=69.9
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEE
Q 042495 56 METPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAH 135 (180)
Q Consensus 56 ~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~ 135 (180)
.+++++|+|.++|||+++++|+|++.+ +.|+|+|++.. + .++..|+++| |.|+|.||.+||.++|+|.
T Consensus 2 k~~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~ 69 (90)
T 2y1y_A 2 AMEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEE----R--QDEHGFISRE-----FHRKYRIPADVDPLTITSS 69 (90)
T ss_dssp ----CCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEE----E--ECSSSEEEEE-----EEEEEECCTTBCGGGCEEE
T ss_pred CcCCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEec----c--cCCCCEEEEE-----EEEEEECCCCcChhHcEEE
Confidence 367899999999999999999999999 89999999865 2 2445677554 9999999999999999999
Q ss_pred E-eCCEEEEEEeCcCcc
Q 042495 136 M-KNGILRVTVPKLAEE 151 (180)
Q Consensus 136 ~-~~GvL~I~iPK~~~~ 151 (180)
| +||+|+|++||...+
T Consensus 70 ~~~~GvL~I~~pK~~~~ 86 (90)
T 2y1y_A 70 MSSDGVLTVNGPRKQVS 86 (90)
T ss_dssp ECTTSEEEEEECBC---
T ss_pred ECCCCEEEEEEEcCCCC
Confidence 9 899999999998765
No 11
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.88 E-value=2.2e-22 Score=168.15 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=87.5
Q ss_pred ccceeeEEECCC----eEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECC
Q 042495 49 ALARADWMETPT----AHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMP 124 (180)
Q Consensus 49 ~~p~~di~e~~~----~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP 124 (180)
+.|++||+|+++ +|+|.++||||++++|+|++++ +.|+|+|+++. +.+ . ++.+|.|.|+|.||
T Consensus 97 ~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~-~~L~I~ge~~~----~~e--~------~r~~g~F~R~~~LP 163 (314)
T 2bol_A 97 LDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSV----ACG--D------AAMSESVGRSIPLP 163 (314)
T ss_dssp TGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEET-TEEEEEECCBS----STT--C------CCBCCCEEEEEECC
T ss_pred CCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEEC-CEEEEEEEEec----cCC--C------CEEEEEEEEEEECC
Confidence 568999999999 9999999999999999999999 89999999876 221 1 17789999999999
Q ss_pred CCCccCCeEEEEe-CCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 125 MSVDLEHVKAHMK-NGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 125 ~~vd~~~i~A~~~-~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
.+||.++|+|+|+ ||||+|++||.+++ .+.|+|+..++
T Consensus 164 ~~Vd~e~i~A~~~~nGVL~I~lPK~~~~----~~~I~it~~~q 202 (314)
T 2bol_A 164 PSVDRNHIQATITTDDVLVIEAPVNEPN----YKAIKLSPEKG 202 (314)
T ss_dssp TTBCGGGCEEEECSSSEEEEEEEBSSCC----TTTEEEETTTE
T ss_pred CCccccccEEEEeCCCEEEEEEeccCcc----cceeecccCCc
Confidence 9999999999999 99999999999754 34477765544
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.84 E-value=4.1e-21 Score=160.44 Aligned_cols=88 Identities=17% Similarity=0.332 Sum_probs=70.5
Q ss_pred eeeEEECC---CeEEEEEEc-CCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 52 RADWMETP---TAHVITLDI-PGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 52 ~~di~e~~---~~~~i~~~l-PG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
.++|.+++ +.|+|.++| ||+++++|+|++++ +.|+|+|+++.+ . ..++++||.+|.|.|+|.||.+|
T Consensus 222 ~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~-~~LtI~ge~~~~----~----~~~~~~Er~~g~F~R~~~LP~~v 292 (314)
T 2bol_A 222 GLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKE----E----KTENASHSEHREFYKAFVTPEVV 292 (314)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESS-SEEEEEEEEC--------------------CEEEEEEEECSSEE
T ss_pred CCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEEC-CEEEEEEEEecc----C----CceEEEEEeeeEEEEEEECCCCc
Confidence 36666655 589999999 99999999999999 899999999772 2 25788999999999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeCc
Q 042495 128 DLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 128 d~~~i~A~~~~GvL~I~iPK~ 148 (180)
|.++|+|+|+||||+|++||.
T Consensus 293 d~~~i~A~~~dGvL~i~~Pk~ 313 (314)
T 2bol_A 293 DASKTQAEIVDGLMVVEAPLF 313 (314)
T ss_dssp CGGGCEEEEETTEEEEEEEEE
T ss_pred ChHHeEEEEeCCEEEEEEecC
Confidence 999999999999999999996
No 13
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.12 E-value=2.7e-10 Score=81.36 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=72.7
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 49 ALARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
..++++|+++++.+.|.+.+||+.++++.|.+++ +.|.|++.... + ..|...+.|+..|+
T Consensus 8 ~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~-~~l~v~~~~~~---------~----------~~y~~~~~L~~~I~ 67 (114)
T 1rl1_A 8 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLPS---------G----------EDYNLKLELLHPII 67 (114)
T ss_dssp CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECTT---------S----------SEEEEEECBSSCCC
T ss_pred CCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEc-CEEEEEEEeCC---------C----------cEEEEEeeCCCcCC
Confidence 4567999999999999999999999999999999 88999986532 1 23778899999999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCcc
Q 042495 129 LEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
++..++.+.+|.|.|+|+|.++.
T Consensus 68 ~e~s~~~~~~~~l~i~L~K~~~~ 90 (114)
T 1rl1_A 68 PEQSTFKVLSTKIEIKLKKPEAV 90 (114)
T ss_dssp GGGEEEEECSSSEEEEEECSSCC
T ss_pred ccccEEEEECCEEEEEEEcCCCC
Confidence 99999999999999999998753
No 14
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=99.10 E-value=2.8e-10 Score=78.02 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=71.3
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCcc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDL 129 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 129 (180)
.++++|+++++.+.|.+.+||+.++++.|.+++ +.|.|++.... + ..|...+.|+..|++
T Consensus 2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~-~~l~v~~~~~~---------~----------~~y~~~~~L~~~I~~ 61 (92)
T 2xcm_C 2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGE-QILSVVIEVPG---------E----------DAYYLQPRLFGKIIP 61 (92)
T ss_dssp CSEEEEEEETTEEEEEEECCSCCGGGEEEEECS-SBEEEEECCTT---------S----------CCEEECCBBSSCBCG
T ss_pred CccccEEeCCCEEEEEEEECCCChHHeEEEEEC-CEEEEEEEcCC---------C----------cEEEEeeEcCCccCc
Confidence 367999999999999999999999999999999 88999976422 1 237788899999999
Q ss_pred CCeEEEEeCCEEEEEEeCcCc
Q 042495 130 EHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iPK~~~ 150 (180)
+..++.+.+|.|.|+|.|.++
T Consensus 62 ~~s~~~~~~~~l~i~L~K~~~ 82 (92)
T 2xcm_C 62 DKCKYEVLSTKIEICLAKADI 82 (92)
T ss_dssp GGCEEEECSSCEEEEEEBSSS
T ss_pred hhEEEEEECCEEEEEEEcCCC
Confidence 999999999999999999864
No 15
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.5e-07 Score=67.72 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=68.6
Q ss_pred cceeeEEECCCeEEEEEEcCCCC--CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 50 LARADWMETPTAHVITLDIPGMK--KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~--~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
.|.+.|.++++..+|.+.+|.+. ..++++.|++ ..+.+.... |.-++.||..|
T Consensus 3 TP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~-~~F~F~~~P------------------------YyLRL~LP~~V 57 (134)
T 2k8q_A 3 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHLSP------------------------YYLRLRFPHEL 57 (134)
T ss_dssp CSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECS-SSEEECSSS------------------------SCEEECCSSCE
T ss_pred CceEEEEECCCEEEEEEEcCccccCccccEEEEeC-CEEEEecCC------------------------eEEEecCCCee
Confidence 47789999999999999999999 8999999999 888888543 55789999998
Q ss_pred -ccCCeEEEEe--CCEEEEEEeCcCcc
Q 042495 128 -DLEHVKAHMK--NGILRVTVPKLAEE 151 (180)
Q Consensus 128 -d~~~i~A~~~--~GvL~I~iPK~~~~ 151 (180)
+.+.-+|+|+ .|.|+|++||..+.
T Consensus 58 ~e~~~~kA~YD~d~~~~~VtLpK~~~G 84 (134)
T 2k8q_A 58 IDDERSTAQYDSKDECINVKVAKLNKN 84 (134)
T ss_dssp ECCSSCEEEEETTTTEEEEEEEESSTT
T ss_pred ecCCCcceeEeccCCEEEEEEeCCCCC
Confidence 8899999996 89999999998865
No 16
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.4e-06 Score=60.65 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=69.4
Q ss_pred ccccceeeEEECCCeEEEEEEcCCCC--CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECC
Q 042495 47 TLALARADWMETPTAHVITLDIPGMK--KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMP 124 (180)
Q Consensus 47 ~~~~p~~di~e~~~~~~i~~~lPG~~--~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP 124 (180)
....|...|.++++..+|.+.+|.+. ..++++.+++ +.+....+. |.-++.||
T Consensus 14 ~~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~-~~F~F~~~P------------------------YyLRL~lP 68 (115)
T 3eud_A 14 KMITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHLSP------------------------YYLRLRFP 68 (115)
T ss_dssp CCBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEET-TEEEEEETT------------------------EEEEEECS
T ss_pred CEeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeC-CEEEEecCC------------------------eEEEEecC
Confidence 34568899999999999999999877 7899999999 888888443 66789999
Q ss_pred CCC-ccCCeEEEEe--CCEEEEEEeCcCcc
Q 042495 125 MSV-DLEHVKAHMK--NGILRVTVPKLAEE 151 (180)
Q Consensus 125 ~~v-d~~~i~A~~~--~GvL~I~iPK~~~~ 151 (180)
..| +-+.-+|+|+ +|.++|++||..+.
T Consensus 69 ~~vved~~~~A~YD~d~g~~~v~lpK~~~G 98 (115)
T 3eud_A 69 HELIDDERSTAQYDSKDECINVKVAKLNKN 98 (115)
T ss_dssp SCEECSTTCEEEEETTTTEEEEEEEESSTT
T ss_pred cceecCCCcceEEeCCCcEEEEEEcCCcCC
Confidence 997 7778899996 89999999999864
No 17
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.11 E-value=6.5e-06 Score=70.03 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=59.9
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccC
Q 042495 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE 130 (180)
Q Consensus 51 p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 130 (180)
.++.|... .|.+++.|||+++++|++.-.+ +.|+|+ .|.|+|.|.||..+...
T Consensus 298 ~~~~i~~~--~~~~~l~lP~~~~~~~~l~~~g-deL~v~------------------------~g~~rR~i~LP~~L~~~ 350 (374)
T 3igf_A 298 KPITIDTH--NRQVRLFLPGFDKKQVKLTQYG-PEVTVE------------------------AGDQRRNIFLPPALSGR 350 (374)
T ss_dssp CSEEEETT--TTEEEEECTTCCGGGCEEEEET-TEEEEE------------------------ETTEEEEEECCTTTTTC
T ss_pred CCEEEEec--cEEEEEECCCCCHHHeEEEEEC-CeEEEE------------------------ECCEeecccCCHHHcCC
Confidence 34555443 8999999999999999999998 899999 56699999999987554
Q ss_pred -CeEEEEeCCEEEEEEeCcC
Q 042495 131 -HVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 131 -~i~A~~~~GvL~I~iPK~~ 149 (180)
-..|+|+||.|+|++-...
T Consensus 351 ~v~~A~~~~~~L~i~~~~~~ 370 (374)
T 3igf_A 351 PITGAKFQNNYLIISFLEHH 370 (374)
T ss_dssp CEEEEEEETTEEEEEECCC-
T ss_pred CccccEEECCEEEEEEehhc
Confidence 5789999999999986543
No 18
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=0.00011 Score=52.96 Aligned_cols=81 Identities=14% Similarity=0.278 Sum_probs=68.0
Q ss_pred cceeeEEECCCeEEEEEEcCCC---CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEE-CCC
Q 042495 50 LARADWMETPTAHVITLDIPGM---KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFR-MPM 125 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~---~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~-LP~ 125 (180)
.+.++|+++.+...|.+.+||+ .++++.|.++. +.|.|.+.... +. .|.-.+. |-.
T Consensus 20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~-~~l~v~~~~~~---------~~----------~y~~~~~~L~~ 79 (127)
T 1x5m_A 20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTE-RSFDLLVKNLN---------GK----------SYSMIVNNLLK 79 (127)
T ss_dssp CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECS-SEEEEEECSCS---------SS----------CEEEEEECBSS
T ss_pred ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEc-CEEEEEEEcCC---------CC----------cEEEEhHHhcC
Confidence 4578999999999999999999 89999999999 88999864321 11 2556775 999
Q ss_pred CCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 126 SVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 126 ~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.|+++.-+..+..+.|.|+|-|..+
T Consensus 80 ~I~~e~S~~~v~~~kVei~L~K~~~ 104 (127)
T 1x5m_A 80 PISVEGSSKKVKTDTVLILCRKKVE 104 (127)
T ss_dssp CCCTTTCEEEEETTEEEEEEECSSS
T ss_pred ccCcccCEEEEeCCEEEEEEEECCC
Confidence 9999998899999999999999874
No 19
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.94 E-value=6.3e-05 Score=55.08 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=70.5
Q ss_pred ccceeeEEEC-CCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeece---EEEEEEECC
Q 042495 49 ALARADWMET-PTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFG---KFWRQFRMP 124 (180)
Q Consensus 49 ~~p~~di~e~-~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g---~f~r~~~LP 124 (180)
..+.++|+++ .+...|.+.++++.++++.|.+.. +.|.|+..... . . ..+.-...| .|.-.+.|-
T Consensus 18 ~~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~-~~l~v~~~~~~----~---~---~l~~~~a~g~~~~y~~~~~L~ 86 (134)
T 1wh0_A 18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRD----G---N---FLRLHPGCGPHTTFRWQVKLR 86 (134)
T ss_dssp SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCC----H---H---HHHHSTTCCTTSCEEEEEEBS
T ss_pred cCCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEEC-CEEEEEEEcCC----C---c---ccccccccCcceeEEEecccc
Confidence 3567999999 999999999999999999999999 88999865422 0 0 000000001 366778899
Q ss_pred CCCccCCeEEEEeCCEEEEEEeCcCcc
Q 042495 125 MSVDLEHVKAHMKNGILRVTVPKLAEE 151 (180)
Q Consensus 125 ~~vd~~~i~A~~~~GvL~I~iPK~~~~ 151 (180)
..|+++.-+.++..+.|.|+|-|++..
T Consensus 87 ~~I~pe~S~~~v~~~kIeI~L~K~e~~ 113 (134)
T 1wh0_A 87 NLIEPEQCTFCFTASRIDICLRKRQSQ 113 (134)
T ss_dssp SCEEEEEEEEEECSSEEEEEEEESSSC
T ss_pred ccCCchhCEEEEeCCEEEEEEEECCCC
Confidence 999999988888899999999998643
No 20
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.78 E-value=0.00032 Score=50.37 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=66.2
Q ss_pred cceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 50 LARADWMETPTAHVITLDIP-GM-KKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lP-G~-~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
.|.+.|.++.+...|++.|| |+ +.++|.|.+.. +.|.|.++... +.. +.-...|...|
T Consensus 19 ~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~-~~l~v~~~~~~---------~~~----------~~~~~~L~~~I 78 (124)
T 1wgv_A 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEEN---------GER----------VLMEGKLTHKI 78 (124)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECSS---------SEE----------EEEEEEBSSCB
T ss_pred CCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEc-CEEEEEEEccC---------CCc----------eEEcccccCcC
Confidence 46799999999999999999 88 89999999999 89999865311 111 22456799999
Q ss_pred ccCCeEEEEeCCE-EEEEEeCcCc
Q 042495 128 DLEHVKAHMKNGI-LRVTVPKLAE 150 (180)
Q Consensus 128 d~~~i~A~~~~Gv-L~I~iPK~~~ 150 (180)
+++.-.-.++++. |.|+|-|...
T Consensus 79 ~~e~S~w~i~~~k~v~i~L~K~~~ 102 (124)
T 1wgv_A 79 NTESSLWSLEPGKCVLVNLSKVGE 102 (124)
T ss_dssp CTTTCEEEECTTSEEEEEECBSSS
T ss_pred CCcCCEEEEeCCCEEEEEEEECCC
Confidence 9999899998885 9999999864
No 21
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.69 E-value=0.00026 Score=50.71 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=64.5
Q ss_pred ccceeeEEECCCeEEEEEEcC-C--CCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCC
Q 042495 49 ALARADWMETPTAHVITLDIP-G--MKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPM 125 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lP-G--~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~ 125 (180)
..|.+.|.++.+...|++.|| | ++.++|.|.+.. +.|.|..+-.. +.-...|..
T Consensus 15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~-~~l~v~~kg~~----------------------~~~~g~L~~ 71 (121)
T 3qor_A 15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQR-RHLRVGLKGQP----------------------AIIDGELYN 71 (121)
T ss_dssp BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEET-TEEEEEETTSC----------------------CSEEEEBSS
T ss_pred cCCCEEEEEccceEEEEEECCCCCcccccceEEEEEc-CEEEEEEcCcc----------------------eEEeccccc
Confidence 346799999999999999999 4 789999999999 78888643111 113557999
Q ss_pred CCccCCeEEEEeCC-EEEEEEeCcCc
Q 042495 126 SVDLEHVKAHMKNG-ILRVTVPKLAE 150 (180)
Q Consensus 126 ~vd~~~i~A~~~~G-vL~I~iPK~~~ 150 (180)
.|+++.-.-.+++| .|.|+|-|...
T Consensus 72 ~I~~deS~w~i~~~~~i~i~L~K~~~ 97 (121)
T 3qor_A 72 EVKVEESSWLIADGAVVTVHLEKINK 97 (121)
T ss_dssp CBCGGGCEEEEETTTEEEEEEEBSSS
T ss_pred cccccccEEEEcCCCEEEEEEEECCC
Confidence 99999988999998 99999999864
No 22
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=97.65 E-value=0.00016 Score=52.40 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=64.4
Q ss_pred cceeeEEECCCeEEEEEEcC-C--CCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCC
Q 042495 50 LARADWMETPTAHVITLDIP-G--MKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMS 126 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lP-G--~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~ 126 (180)
.|.+.|.++.+...|.+.|| | ++.++|.|.+.. +.|.|..+ . . . +.-...|...
T Consensus 7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~-~~l~v~~k--g----~------~----------~~~~~~L~~~ 63 (131)
T 1wfi_A 7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLK--G----Q------P----------PVVDGELYNE 63 (131)
T ss_dssp CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEET--T----S------C----------CSBCSCBSSC
T ss_pred CCcEEEEecCCEEEEEEECCCCCcccccceEEEEeC-CEEEEEEC--C----c------e----------EEEecccccc
Confidence 46799999999999999999 6 899999999999 89999853 2 0 0 1123458889
Q ss_pred CccCCeEEEEeCC-EEEEEEeCcCc
Q 042495 127 VDLEHVKAHMKNG-ILRVTVPKLAE 150 (180)
Q Consensus 127 vd~~~i~A~~~~G-vL~I~iPK~~~ 150 (180)
|+++.-.-.+++| .|.|+|-|..+
T Consensus 64 I~~e~s~w~i~~~k~v~i~L~K~~~ 88 (131)
T 1wfi_A 64 VKVEESSWLIEDGKVVTVHLEKINK 88 (131)
T ss_dssp BCSTTCEEEEETTTEEEEEEEBSSS
T ss_pred cccccCEEEEcCCCEEEEEEEECCC
Confidence 9999989999998 89999999875
No 23
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=97.59 E-value=0.00044 Score=49.71 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=65.5
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCC
Q 042495 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEH 131 (180)
Q Consensus 52 ~~di~e~~~~~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 131 (180)
.++++++.+...|++.||+. +++.|.++. +.|.+++.... ++ ..|.-.+.|-..|+++.
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~-~~l~~~~~~~~--------~~----------~~y~~~l~L~~~I~~e~ 63 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGS--------DN----------FKHLNEIDLFHCIDPND 63 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETT--------TT----------EEEEEEEEBSSCEEEEE
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEEC-CEEEEEEEeCC--------CC----------ceEEEEEEccceecccc
Confidence 79999999999999999996 689999999 89999976422 11 12567788999999999
Q ss_pred eEEEEeCCEEEEEEeCcCc
Q 042495 132 VKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK~~~ 150 (180)
.+.++.+..+.|+|.|+.+
T Consensus 64 S~~~v~~~kiei~L~K~~~ 82 (125)
T 1ejf_A 64 SKHKRTDRSILCCLRKGES 82 (125)
T ss_dssp EEEEECSSCEEEEEEESST
T ss_pred CEEEECCCEEEEEEEECCC
Confidence 8888888899999999864
No 24
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.50 E-value=0.0012 Score=47.81 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=61.8
Q ss_pred cceeeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 50 LARADWMETPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
.|.+.|.++.+...|.+.|| |++.++|.|.+.. +.|.|.++ . .. .-...|...|+
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~-~~l~v~~~--g----------~~-----------~~~~~L~~~I~ 59 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVG-KKICVKNQ--G----------EI-----------VIDGELLHEVD 59 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC---CCSCEEEEEET-TEEEEEET--T----------EE-----------EEEEEBSSCEE
T ss_pred CCcEEEEecCCEEEEEEECCCCCCccceEEEEEC-CEEEEEEC--C----------Ee-----------eEccccccccc
Confidence 36799999999999999996 9999999999999 88999852 1 00 13457899999
Q ss_pred cCCeEEEEeCCEEEEEEeCcC
Q 042495 129 LEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~ 149 (180)
++.-.-.+.+|.|.|+|-|..
T Consensus 60 ~e~S~w~i~~~kv~i~L~K~~ 80 (131)
T 2o30_A 60 VSSLWWVINGDVVDVNVTKKR 80 (131)
T ss_dssp EEEEEEEEETTEEEEEEEESS
T ss_pred cccCEEEEeCCEEEEEEEECC
Confidence 999888899999999999984
No 25
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=97.49 E-value=0.0007 Score=50.69 Aligned_cols=78 Identities=12% Similarity=0.241 Sum_probs=65.1
Q ss_pred ccceeeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCC
Q 042495 49 ALARADWMETPTAHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127 (180)
Q Consensus 49 ~~p~~di~e~~~~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 127 (180)
..+.+.|.++.+...|++.|| |++.++|.|.+.. +.|.|..+ . .. + -...|...|
T Consensus 12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~-~~L~v~~k--g----------~~----------~-l~g~L~~~I 67 (157)
T 2rh0_A 12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQS-RHVALAVG--G----------RE----------I-LKGKLFDST 67 (157)
T ss_dssp ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECS-SEEEEEET--T----------EE----------E-EEEEBSSCB
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccceEEEEec-CEEEEEEC--C----------EE----------E-Eeecccccc
Confidence 456799999999999999998 8999999999999 88988743 1 00 1 356799999
Q ss_pred ccCCeEEEEeCCE-EEEEEeCcCc
Q 042495 128 DLEHVKAHMKNGI-LRVTVPKLAE 150 (180)
Q Consensus 128 d~~~i~A~~~~Gv-L~I~iPK~~~ 150 (180)
+++.-.-.+.++. |.|+|-|...
T Consensus 68 ~~eeS~w~i~~~k~v~I~L~K~~~ 91 (157)
T 2rh0_A 68 IADEGTWTLEDRKMVRIVLTKTKR 91 (157)
T ss_dssp CGGGCEEEEECCCEEEEEEEBSSC
T ss_pred CccccEEEEcCCcEEEEEEEEcCC
Confidence 9999899999885 9999999874
No 26
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.33 E-value=0.00064 Score=50.57 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=64.1
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEe-cCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCc
Q 042495 50 LARADWMETPTAHVITLDIPGMKKDNMKIEVE-ENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVD 128 (180)
Q Consensus 50 ~p~~di~e~~~~~~i~~~lPG~~~~dI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 128 (180)
.|.++|+++.+.+.|++.||++ +++.|.++ . +.|.+++. .. .+ ..|.-.+.|=..|+
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~-~~l~~~~~-~~--------~~----------~~y~~~l~L~~~Id 61 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQ-GLFSFSAL-GA--------QG----------ERFEFSLELYGKIM 61 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSSE--EEEEECCCTT-EEEEEEEE-TT--------TT----------EEEEEEEEBSSCEE
T ss_pred CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecC-CEEEEEEE-cC--------CC----------ceEEEEeEhhhccc
Confidence 4679999999999999999998 47888888 7 88999987 22 11 12667788999999
Q ss_pred cCCeEEEEeCCEEEEEEeCcCc
Q 042495 129 LEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 129 ~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
++ -+.++....+.|+|.|+++
T Consensus 62 pe-S~~~v~~~kIei~L~K~e~ 82 (150)
T 2kmw_A 62 TE-YRKNVGLRNIIFSIQKEER 82 (150)
T ss_dssp EE-EEEEEESSSEEEEEEECCS
T ss_pred cc-ceEEecCCEEEEEEEECCC
Confidence 99 8888888889999999874
No 27
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00016 Score=52.84 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=59.8
Q ss_pred cceeeEEECCCe-------EEEEEEcCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEE
Q 042495 50 LARADWMETPTA-------HVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFR 122 (180)
Q Consensus 50 ~p~~di~e~~~~-------~~i~~~lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~ 122 (180)
.|.+.|+++.+. +.|++.+|++. ++.|.++. +.|.+++..... ...... ..|.-.+.
T Consensus 6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~-~~l~~~~~~~~~----~g~~~~---------~~y~~~l~ 69 (134)
T 2cg9_X 6 NPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKP-SYIELKAQSKPH----VGDENV---------HHYQLHID 69 (134)
T ss_dssp -----CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCS-SEEEECCEEC-----------C---------EEBCEEEE
T ss_pred CCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEEC-CEEEEEEecccc----cCCccC---------ceEEEEEE
Confidence 467888888877 99999999984 88888888 889998764220 000000 12557789
Q ss_pred CCCCCccCCeEEEEeCCE-EEEEEeCcC
Q 042495 123 MPMSVDLEHVKAHMKNGI-LRVTVPKLA 149 (180)
Q Consensus 123 LP~~vd~~~i~A~~~~Gv-L~I~iPK~~ 149 (180)
|...|+++..+..+.++. |.|+|.|+.
T Consensus 70 L~~~Idpe~S~~~v~~~~~vei~L~K~~ 97 (134)
T 2cg9_X 70 LYKEIIPEKTMHKVANGQHYFLKLYKKD 97 (134)
T ss_dssp CSSCCCSSSEEEEECCC--CEEEEEECS
T ss_pred ChhhccccccEEEECCCEEEEEEEEECC
Confidence 999999999999999988 999999987
No 28
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=83.38 E-value=2.1 Score=27.88 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
.|.-.+.|| .++.+.|+..+++|.|+|.--+..
T Consensus 8 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 8 RWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAA 40 (85)
T ss_dssp EEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-
T ss_pred EEEEEEECC-CCChHHEEEEEECCEEEEEEEEcc
Confidence 477899999 899999999999999999987654
No 29
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=80.99 E-value=5.5 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
.|.-.+.|| .++.+.|+-.+++|.|+|.--+...
T Consensus 15 ~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~ 48 (100)
T 3gla_A 15 HFVLYADLP-GIDPSQIEVQMDKGILSIRGERKSE 48 (100)
T ss_dssp EEEEEEECT-TSCGGGCEEEEETTEEEEEEEECCG
T ss_pred EEEEEEECC-CCCHHHEEEEEECCEEEEEEEEcCc
Confidence 477789999 7999999999999999999876654
No 30
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=77.13 E-value=9.1 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=28.0
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCc
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~~ 150 (180)
|.-.+.|| .++.+.|+..+++|.|+|+--+...
T Consensus 68 ~~v~~dlP-G~~~edi~V~~~~~~L~I~g~~~~~ 100 (161)
T 4eld_A 68 IKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPL 100 (161)
T ss_dssp EEEEEECT-TCCGGGEEEEEETTEEEEEEECCCC
T ss_pred EEEEEECC-CCChHhEEEEEECCEEEEEEEEccc
Confidence 55667898 7999999999999999999877653
No 31
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=76.53 E-value=3.7 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
.|.-.+.|| .++.+.|+-.+.+|.|+|..-+..
T Consensus 7 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 39 (90)
T 2y1y_A 7 RFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEE 39 (90)
T ss_dssp CEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECC-CCcHHHeEEEEECCEEEEEEEEec
Confidence 377889999 899999999999999999986543
No 32
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=75.45 E-value=4.7 Score=27.35 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 116 KFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
.|.-.+.|| .++.+.|+..+++|.|+|.--+.
T Consensus 13 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 44 (106)
T 3l1e_A 13 KFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHN 44 (106)
T ss_dssp EEEEEEECT-TSCGGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEECCEEEEEEEEc
Confidence 477889999 89999999999999999998643
No 33
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=73.44 E-value=4.7 Score=27.08 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=28.3
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-.+.|| +++.+.|+-.+++|.|+|.--+..
T Consensus 13 ~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~ 44 (101)
T 2wj5_A 13 FSVLLDVK-HFSPEEISVKVVGDHVEVHARHEE 44 (101)
T ss_dssp EEEEEECT-TSCGGGEEEEEETTEEEEEEEEEE
T ss_pred EEEEEECC-CCcHHHeEEEEECCEEEEEEEEec
Confidence 66789999 999999999999999999987654
No 34
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=72.73 E-value=7 Score=26.14 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=28.0
Q ss_pred eEEEEEEcC-CCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 61 AHVITLDIP-GMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 61 ~~~i~~~lP-G~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
.|.-.+.|| +++.+.|+-++.+ |+|+|+..+..
T Consensus 62 ~f~R~~~LP~~vd~~~i~A~~~~-GvL~I~lpK~~ 95 (102)
T 4fei_A 62 RFVRELAFPEPVRPASGVASLAG-GVLTVRFEKLR 95 (102)
T ss_dssp EEEEEEECSSCBCTTCCEEEEET-TEEEEEEEBSS
T ss_pred EEEEEEECCCCcchhHcEEEEEC-CEEEEEEEccC
Confidence 455578899 6999999999999 99999988765
No 35
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=71.53 E-value=8.9 Score=25.98 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.6
Q ss_pred CCCeEEEEecCcEEEEEeEE
Q 042495 73 KDNMKIEVEENRVLRVSGER 92 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~ 92 (180)
|+.++|++++ +.|+|+|.+
T Consensus 20 P~gV~V~i~~-~~VtVKGPk 38 (100)
T 2cql_A 20 PENVDITLKG-RTVIVKGPR 38 (100)
T ss_dssp CSSCEEEEET-TEEEEEETT
T ss_pred CCCCEEEEeC-CEEEEECCC
Confidence 5788999999 899999876
No 36
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=68.12 E-value=10 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=28.0
Q ss_pred EEEEEECCCCCccCCeEEEEeC-CEEEEEEeCcCc
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKN-GILRVTVPKLAE 150 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~-GvL~I~iPK~~~ 150 (180)
|.-.+.|| +++.+.|+..+.+ |.|+|+.-+...
T Consensus 36 ~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 69 (123)
T 3aab_A 36 LVVVADLA-GFNKEKIKARVSGQNELIIEAEREIT 69 (123)
T ss_dssp EEEEEECC-SCCGGGCEEEEETTTEEEEEEECCCC
T ss_pred EEEEEECC-CCCHHHEEEEEeCCCEEEEEEEEecc
Confidence 55677899 7999999999999 999999987653
No 37
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=66.17 E-value=22 Score=25.50 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=26.9
Q ss_pred EEEEEECCCCCccCCeEEEEe-CCEEEEEEeCcCc
Q 042495 117 FWRQFRMPMSVDLEHVKAHMK-NGILRVTVPKLAE 150 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~-~GvL~I~iPK~~~ 150 (180)
|.-.+.|| .++.+.|+..++ ++.|+|+.-+...
T Consensus 55 ~~v~~dlP-Gv~kedI~V~v~~~~~L~I~g~~~~~ 88 (151)
T 1gme_A 55 HVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKE 88 (151)
T ss_dssp EEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCC
T ss_pred EEEEEECC-CCChHHEEEEEecCCEEEEEEEEccc
Confidence 55677899 899999999995 6799999876654
No 38
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=65.52 E-value=10 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=31.5
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++++|++++ +.++|+|.+-. .++.| +.. ++-.++++.|.|..+
T Consensus 12 P~gV~v~i~~-~~v~VkGpkG~----------------------L~~~~--~~~-----v~i~~~~~~l~v~~~ 55 (180)
T 3v2d_H 12 PKGVSVEVAP-GRVKVKGPKGE----------------------LEVPV--SPE-----MRVVVEEGVVRVERP 55 (180)
T ss_dssp CTTCEEEEET-TEEEEECSSCE----------------------EEEEC--CTT-----SEEEEETTEEEEECS
T ss_pred CCCcEEEEeC-CEEEEEeCCcE----------------------EEEEe--CCC-----EEEEEECCEEEEEEC
Confidence 5789999999 89999988633 44444 433 445578898888753
No 39
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.34 E-value=11 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=31.3
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVP 146 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iP 146 (180)
|++++|++++ +.++|+|.+-. .++.|.-| . ++-.++++.|.|..+
T Consensus 14 P~gV~v~i~~-~~V~VkGpkG~----------------------L~~~~~~~-~-----v~i~~~~~~l~v~~~ 58 (184)
T 3j21_F 14 PEGVEVTVEG-YKVKVKGPKGE----------------------LEREFFWP-G-----IQIFTEDGNVVIYKD 58 (184)
T ss_dssp CSSCEEEESS-SEEEEECSSCE----------------------EEEECCCT-T-----CEEEEETTEEEEECS
T ss_pred CCCcEEEEeC-CEEEEEcCCeE----------------------EEEEecCC-c-----EEEEEeCCEEEEEEC
Confidence 4789999988 89999987633 44554322 2 445578888888753
No 40
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=65.20 E-value=16 Score=28.29 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
|+.|+|++++ +.|+|+|.+-. .++.| +.. |....++|.|.|..+..
T Consensus 39 P~gV~V~i~~-~~VtVKGPkG~----------------------L~~~~--~~~-----v~i~~e~~~i~v~~~~~ 84 (212)
T 1nkw_E 39 PSGVTVNAQD-GVFKVKGPKGE----------------------LTVPY--NTE-----LTVRQDGDQLLVERPSD 84 (212)
T ss_pred CCCcEEEEeC-CEEEEECCCEE----------------------EEEEC--CCC-----eEEEEECCEEEEEcCCC
Confidence 5788999999 89999987633 44444 433 44567888888876544
No 41
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=65.03 E-value=14 Score=27.69 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
|+.++|++++ +.++|+|.+ |..++.| +.. +....++|.|.|..+..
T Consensus 11 P~gV~V~i~~-~~VtVkGpk----------------------G~L~~~~--~~~-----v~i~~~~~~l~v~~~~~ 56 (177)
T 1rl6_A 11 PAGVTVTVNG-NTVTVKGPK----------------------GELTRTF--HPD-----MTITVEGNVITVTRPSD 56 (177)
T ss_dssp CTTCEEEEET-TEEEEEETT----------------------EEEEEEC--CTT-----CEEEEETTEEEEECSCC
T ss_pred CCCCEEEEeC-CEEEEECCC----------------------eEEEEEc--CCC-----EEEEEeCCEEEEEcCCC
Confidence 5788999999 899999876 3354544 433 45567899988886544
No 42
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=58.20 E-value=11 Score=27.99 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 042495 117 FWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLA 149 (180)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~~ 149 (180)
|.-.+.|| +++.+.|+..+++|.|+|.--+..
T Consensus 75 ~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~ 106 (175)
T 2klr_A 75 FSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEE 106 (175)
T ss_dssp EEEEECCS-SCCGGGEEEEEETTEEEEEEEEEE
T ss_pred EEEEEECC-CCChHHEEEEEECCEEEEEEEEcc
Confidence 66788899 899999999999999999986543
No 43
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=56.40 E-value=11 Score=28.34 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
|+.++|++++ +.++|+|.+ |..++.|. +. .++...++|.|.|..+..
T Consensus 9 P~gV~v~i~~-~~vtVkGpk----------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~~~ 55 (178)
T 1vq8_E 9 PEDVDAEQDH-LDITVEGDN----------------------GSVTRRLW-YP-----DIDVSVDGDTVVIESDED 55 (178)
T ss_dssp CTTCEEEEET-TEEEEEETT----------------------EEEEEECC-CT-----TCEEEEETTEEEEECSCC
T ss_pred CCCCEEEEeC-CEEEEECCC----------------------eEEEEEEE-CC-----eEEEEEECCEEEEEcCCC
Confidence 4788999999 899999876 33555442 32 345567899988876544
No 44
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=55.93 E-value=35 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEE-EeCCEEEEEEeC
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAH-MKNGILRVTVPK 147 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~-~~~GvL~I~iPK 147 (180)
|++++|++++ +.++|+|.+- ..++. |+. + .+.-. .++|.|.|..+.
T Consensus 13 P~gV~v~i~~-~~V~VkGPkG----------------------~L~~~--~~~-~---~v~i~~~~~~~l~v~~~~ 59 (191)
T 3u5e_H 13 PEGVTVSIKS-RIVKVVGPRG----------------------TLTKN--LKH-I---DVTFTKVNNQLIKVAVHN 59 (191)
T ss_dssp CTTCEEEEET-TEEEEEETTE----------------------EEEEE--CTT-T---CCEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEeC-CEEEEEcCCe----------------------EEEEE--ccC-C---cEEEEEecCCeEEEEECC
Confidence 5889999999 8999998763 34444 442 1 23344 468888888653
No 45
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=53.58 E-value=9.9 Score=24.13 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.2
Q ss_pred CCeEEEEeCCEEEEEEe
Q 042495 130 EHVKAHMKNGILRVTVP 146 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iP 146 (180)
..|.|.|+||||.-.=|
T Consensus 3 k~IeAiYEnGVfkPLe~ 19 (69)
T 2nwt_A 3 KIIEAVYENGVFKPLQK 19 (69)
T ss_dssp CCEEEEEETTEEEESSC
T ss_pred ceEEEEEECCEEeECCc
Confidence 45999999999975433
No 46
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=50.55 E-value=18 Score=27.39 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=31.5
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEE--eCCEEEEEEeC
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHM--KNGILRVTVPK 147 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~--~~GvL~I~iPK 147 (180)
|+.++|++++ +.++|+|.+- ..++.| + ...++-.+ +++.|.|..+.
T Consensus 13 P~gV~v~i~~-~~V~VkGPkG----------------------~L~~~~--~----~~~v~i~~~~~~~~l~v~~~~ 60 (190)
T 3iz5_F 13 PEGVTVQVAA-KVVTVEGPRG----------------------KLTRNF--K----HLNLDFQLLEGGRKLQVDAWF 60 (190)
T ss_dssp CTTCEEEEET-TEEEEEETTE----------------------EEEEEC--C----CTTEEEEEETTTTEEEEEESC
T ss_pred CCCCEEEEeC-CEEEEECCCc----------------------eEEEEc--c----CCcEEEEEEcCCCEEEEEECC
Confidence 5789999999 8999998763 344543 2 11344556 78888887653
No 47
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=49.97 E-value=28 Score=26.36 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=33.8
Q ss_pred cCCCCCCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCE---EEEE
Q 042495 68 IPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGI---LRVT 144 (180)
Q Consensus 68 lPG~~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~Gv---L~I~ 144 (180)
.|=-=|+.++|++++ +.++|+|.+- ..++. ||.. .|....++|. |.|.
T Consensus 8 ~pI~IP~gV~V~i~~-~~VtVkGpkG----------------------~L~~~--~~~~----~v~i~~~~~~~~~i~v~ 58 (192)
T 2zkr_e 8 QTVDIPENVDITLKG-RTVIVKGPRG----------------------TLRRD--FNHI----NVELSLLGKKKKRLRVD 58 (192)
T ss_dssp --CCCCTTCEEEEET-TEEEEEETTE----------------------EEEEE--CCSS----SCEEEEETTTTCEEEEE
T ss_pred CcEEcCCCCEEEEeC-CEEEEECCCe----------------------EEEEE--eCCC----CEEEEEecCceeEEEEE
Confidence 333346889999999 8999998763 34444 4431 3455677887 8887
Q ss_pred EeCc
Q 042495 145 VPKL 148 (180)
Q Consensus 145 iPK~ 148 (180)
.+..
T Consensus 59 ~~~~ 62 (192)
T 2zkr_e 59 KWWG 62 (192)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 48
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=48.90 E-value=24 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.8
Q ss_pred CCCCeEEEEecCcEEEEEeEEc
Q 042495 72 KKDNMKIEVEENRVLRVSGERK 93 (180)
Q Consensus 72 ~~~dI~V~v~~~~~L~I~g~~~ 93 (180)
=|++++|++++ +.++|+|.+-
T Consensus 12 IP~gV~v~i~~-~~V~VkGPkG 32 (188)
T 4a17_E 12 IPDKVTITAKQ-RVVEVKGPLG 32 (188)
T ss_dssp CCTTCEEEEET-TEEEEEETTE
T ss_pred CCCCcEEEEeC-CEEEEEcCCe
Confidence 36899999999 8999998763
No 49
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=46.53 E-value=16 Score=28.51 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=32.2
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~iPK~ 148 (180)
|+.|+|++++ +.|+|+|.+-. ..+. |+..|+.. ..++|.|.|..+..
T Consensus 54 P~gV~V~i~~-~~VtVKGPkG~----------------------L~~~--~~~~v~i~----~~e~~~i~v~~~~~ 100 (223)
T 3bbo_I 54 PSNVTIALEG-QDLKVKGPLGE----------------------LALT--YPREVELT----KEESGFLRVKKTVE 100 (223)
T ss_dssp STTSCEEESS-SEEEECCSSCC----------------------EEEE--CCSSCEEE----ECSSSCEEEECSSC
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEE--cCCCEEEE----EecCCEEEEEcCCC
Confidence 5788999998 89999988644 4343 45544331 45788888876543
No 50
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=40.00 E-value=22 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTV 145 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~i 145 (180)
|++++|++++ +.++|+|.+-. .++. |+.. ++-.++++.|.|..
T Consensus 11 P~gV~v~i~~-~~V~VkGpkG~----------------------L~~~--~~~~-----v~i~~~~~~l~v~~ 53 (176)
T 3r8s_G 11 PAGVDVKING-QVITIKGKNGE----------------------LTRT--LNDA-----VEVKHADNTLTFGP 53 (176)
T ss_dssp CTTCCCEESS-SEEECCBTTBC----------------------CEEE--CCSS-----CEEEEETTEEEEEC
T ss_pred CCCcEEEEeC-CEEEEEcCCEE----------------------EEEE--CCCC-----EEEEEeCCEEEEEE
Confidence 5788999988 89999987644 3344 3543 44567889888873
No 51
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=34.25 E-value=22 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.1
Q ss_pred CeEEEEeCCEEEEEEeCc
Q 042495 131 HVKAHMKNGILRVTVPKL 148 (180)
Q Consensus 131 ~i~A~~~~GvL~I~iPK~ 148 (180)
.+.+.+.+|||+|+++..
T Consensus 29 d~D~e~~~gVLti~f~~~ 46 (106)
T 1ew4_A 29 DIDCEINGGVLTITFENG 46 (106)
T ss_dssp CCEEEEETTEEEEECTTS
T ss_pred CEeeeccCCEEEEEECCC
Confidence 378889999999999744
No 52
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=33.41 E-value=72 Score=21.79 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.2
Q ss_pred EEECCCeEEEEEEc-CCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 55 WMETPTAHVITLDI-PGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 55 i~e~~~~~~i~~~l-PG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
+.+.++.+.|.+.+ ||-+++.|. .+.+ +.|.|+-....
T Consensus 8 ~~~~~~~v~l~v~V~P~A~r~~I~-g~~~-~~LkV~v~ApP 46 (108)
T 1n91_A 8 VTVNDDGLVLRLYIQPKASRDSIV-GLHG-DEVKVAITAPP 46 (108)
T ss_dssp EEECSSEEEEEEEEECSSSSCEEE-EECS-SCEEEECCCCS
T ss_pred EEECCCeEEEEEEEeeCCCcceee-cccC-CEEEEEEecCC
Confidence 56778889999888 999999884 4666 78888865544
No 53
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=30.83 E-value=37 Score=23.88 Aligned_cols=17 Identities=12% Similarity=0.581 Sum_probs=14.6
Q ss_pred eEEEEeCCEEEEEEeCc
Q 042495 132 VKAHMKNGILRVTVPKL 148 (180)
Q Consensus 132 i~A~~~~GvL~I~iPK~ 148 (180)
+.+.+.+|||+|+++..
T Consensus 49 ~Dve~~~gVLti~f~~~ 65 (123)
T 3oeq_A 49 PDVELSHGVMTLEIPAF 65 (123)
T ss_dssp CEEEECSSEEEEECTTT
T ss_pred eEEEccCCEEEEEECCC
Confidence 78889999999999743
No 54
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=30.10 E-value=70 Score=22.10 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=23.8
Q ss_pred eEEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 042495 115 GKFWRQFRMPMSVDLEHVKAHMKNGILRVTV 145 (180)
Q Consensus 115 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~i 145 (180)
....-.|.||.+++.+.+...+...-|.|.+
T Consensus 14 ~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~ 44 (131)
T 2o30_A 14 NEINIQFPVTGDADSSAIKIRMVGKKICVKN 44 (131)
T ss_dssp TEEEEEEECC---CCSCEEEEEETTEEEEEE
T ss_pred CEEEEEEECCCCCCccceEEEEECCEEEEEE
Confidence 3456788999999999999999999999987
No 55
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=28.64 E-value=1.2e+02 Score=21.03 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCeEEEEe---CCEEEEEEeCcCccccCCCcEEEeccC
Q 042495 130 EHVKAHMK---NGILRVTVPKLAEEKKRQPKVINIDEE 164 (180)
Q Consensus 130 ~~i~A~~~---~GvL~I~iPK~~~~~~~~~r~I~I~~~ 164 (180)
.+|+..|+ ||+|.|+.--.. ..+...|.|+..
T Consensus 98 ~~IeVtf~iD~nGiL~V~a~d~~---tg~~~~i~i~~~ 132 (135)
T 1q5l_A 98 PQIEVTFDIDADGILHVSAKDKN---SGKEQKITIKAS 132 (135)
T ss_dssp CCEEEEEEECTTSEEEEEEEETT---TCCEEEEEEECS
T ss_pred eEEEEEEEECCCCEEEEEEEECC---CCCEEEEEEecC
Confidence 36777764 999999985332 234567777654
No 56
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=27.05 E-value=38 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=18.1
Q ss_pred CCCCCeEEEEecCcEEEEEeEEcC
Q 042495 71 MKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 71 ~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
|+.+.|.+.... +.|.|+|+.=.
T Consensus 18 Fd~e~i~L~T~~-G~L~IkG~~L~ 40 (71)
T 2ks0_A 18 FDPKEILLETIQ-GVLSIKGEKLG 40 (71)
T ss_dssp ECSSEEEEEETT-EEEEEEEECCC
T ss_pred ECCCEEEEEeCc-eEEEEEcCCcE
Confidence 677888888888 88999987543
No 57
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A*
Probab=26.47 E-value=1.4e+02 Score=23.49 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCCeEEEEecCcEEEEEeEEcCCCCccccccCceEE-EEeeeceEEEEEEECCCC
Q 042495 73 KDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWH-KAERTFGKFWRQFRMPMS 126 (180)
Q Consensus 73 ~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~-~~er~~g~f~r~~~LP~~ 126 (180)
++++.| ++ +.|+|++.+.. +.++. .....+|.|+-++.||..
T Consensus 32 ~~Nv~v--~~-G~L~L~~~k~t---------sa~i~Sk~~~~yG~~Ear~Klp~g 74 (274)
T 2uwa_A 32 PQHQRV--DQ-GSLTIWLDSTS---------GSGFKSINRYRSGYFGANIKLQSG 74 (274)
T ss_dssp GGGEEE--ET-TEEEEEECSSC---------CEEEEEEEEEEEEEEEEEEECCCS
T ss_pred CCCEEE--EC-CEEEEEEecCC---------CCEEEECceEeeEEEEEEEEeCCC
Confidence 445544 55 56777765421 12222 234568999999999964
No 58
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=26.46 E-value=44 Score=23.38 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=21.7
Q ss_pred cCCCCCCCeEEEEecCcEEEEEeEEcC
Q 042495 68 IPGMKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 68 lPG~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
-|.+++-.|.|.+++ +.++++|....
T Consensus 2 ~~~~~p~~i~V~v~~-G~VTLsG~Vp~ 27 (132)
T 2kgs_A 2 ASALSLSLLSISRSG-NTVTLIGDFPD 27 (132)
T ss_dssp CCCCCEEEEEEEECS-SEEEEEEEESC
T ss_pred CCcccceeEEEEEEC-CEEEEEEECCC
Confidence 366777789999998 89999999875
No 59
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=25.96 E-value=2.3e+02 Score=21.87 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=40.1
Q ss_pred EcCCCCCCCeEEEEe-cCcEEEEEeEEcCCCCccccccCceEEEEeeeceEEEEEEECCCCCccCCeEEEEeCCEEEEE
Q 042495 67 DIPGMKKDNMKIEVE-ENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVT 144 (180)
Q Consensus 67 ~lPG~~~~dI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~ 144 (180)
.|||+..+==-+... +++.|.+.... ....+.--.. |.+.|++.|...-|.+.|... .+|.+.|.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~-----------~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs 86 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINK-----------PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVIS 86 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEET-----------TEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECC-----------CCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEE
Confidence 589998752235555 23667664322 2334444444 788899999877788887653 56655553
No 60
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A
Probab=25.33 E-value=77 Score=24.17 Aligned_cols=44 Identities=11% Similarity=0.339 Sum_probs=23.8
Q ss_pred EEecCcEEEEEeEEcCCCCccccccCceEEEE---eeeceEEEEEEECCCC
Q 042495 79 EVEENRVLRVSGERKSNDYYKEGVEGEKWHKA---ERTFGKFWRQFRMPMS 126 (180)
Q Consensus 79 ~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~---er~~g~f~r~~~LP~~ 126 (180)
.+.+++.|+|++.+.. ...-...++... ...+|.|+-++.||..
T Consensus 53 ~v~~~G~L~I~~~~~~----~~~~~S~~i~S~~~f~~~yG~~E~r~klp~g 99 (245)
T 2hyk_A 53 ALDGNGNLVITARQEA----DGGYTSARLTTQNKVQPQYGRVEASIQIPRG 99 (245)
T ss_dssp EECSSSCEEEEEEECT----TSCEEECEEECTTTCCCCSEEEEEEEECCCS
T ss_pred EEecCCEEEEEEEecC----CCCEEEEEEEccCcccccCCeEEEEEEcCCC
Confidence 3443356888777643 111112222222 2357889999999953
No 61
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=24.82 E-value=1.6e+02 Score=20.88 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=21.6
Q ss_pred CCeEEEEe---CCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 130 EHVKAHMK---NGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 130 ~~i~A~~~---~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
-+|+..|. ||+|.|+.--.. ..+...|.|.....
T Consensus 81 ~~IeVtf~iD~nGiL~Vsa~d~~---tg~~~~i~I~~~~~ 117 (152)
T 3dob_A 81 PQIEVTFNIDANGILNVSAEDKS---TGKSNRITIQNEKG 117 (152)
T ss_dssp CCEEEEEEECTTCCEEEEEEETT---TCCEEEEEECCC--
T ss_pred ceEEEEEEeCCCCeEEEEEEEcC---CCCEEEEEEEcCCC
Confidence 45666663 999999985332 34456788876544
No 62
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=24.41 E-value=56 Score=19.23 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=18.7
Q ss_pred CCCCCeEEEEecCcEEEEEeEEcC
Q 042495 71 MKKDNMKIEVEENRVLRVSGERKS 94 (180)
Q Consensus 71 ~~~~dI~V~v~~~~~L~I~g~~~~ 94 (180)
+.-+||.|..++ +.++|.|+.+.
T Consensus 30 lgyndinvtwdg-dtvtvegqleg 52 (62)
T 2gjh_A 30 LGYNDINVTWDG-DTVTVEGQLEG 52 (62)
T ss_dssp TTCCSCEEEECS-SCEEEEEECCC
T ss_pred hCcccceeEEcC-CEEEEEeEEcC
Confidence 345789999999 89999998754
No 63
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=23.97 E-value=1.9e+02 Score=20.47 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCeEEEEe---CCEEEEEEeCcCccccCCCcEEEeccCCC
Q 042495 130 EHVKAHMK---NGILRVTVPKLAEEKKRQPKVINIDEESG 166 (180)
Q Consensus 130 ~~i~A~~~---~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 166 (180)
-+|+..|. ||+|.|+.--.. ..+...|.|.....
T Consensus 81 ~~I~Vtf~iD~nGiL~V~a~d~~---tg~~~~i~I~~~~~ 117 (152)
T 3h0x_A 81 PQIEVTFALDANGILKVSATDKG---TGKSESITITNDKG 117 (152)
T ss_dssp SCEEEEEEECTTSEEEEEEEETT---TCCEEEEEEECCTT
T ss_pred ceEEEEEEEcCCCEEEEEEEEcC---CCcEeEEEEecCCC
Confidence 35666663 999999985332 34456788876543
No 64
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=22.39 E-value=53 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.6
Q ss_pred CCeEEEEeCCEEEEEEe
Q 042495 130 EHVKAHMKNGILRVTVP 146 (180)
Q Consensus 130 ~~i~A~~~~GvL~I~iP 146 (180)
..+.+.+.+|||+|+++
T Consensus 40 ~d~D~e~~~gVLti~f~ 56 (129)
T 3t3l_A 40 EDYDVSFGSGVLTVKLG 56 (129)
T ss_dssp TTCEEEEETTEEEEECC
T ss_pred cceeeecCCCEEEEEEc
Confidence 45778899999999996
No 65
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=21.28 E-value=2e+02 Score=20.10 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=27.9
Q ss_pred eeeEEECC------CeEEEEEEcCCCCCC-----CeEEEE--ecCcEEEEEeEEc
Q 042495 52 RADWMETP------TAHVITLDIPGMKKD-----NMKIEV--EENRVLRVSGERK 93 (180)
Q Consensus 52 ~~di~e~~------~~~~i~~~lPG~~~~-----dI~V~v--~~~~~L~I~g~~~ 93 (180)
.+.|++.+ +.++-++.|.|+.+. .|+|.+ +.++.|.|++.-.
T Consensus 48 ~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL~V~a~d~ 102 (152)
T 2op6_A 48 SIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDK 102 (152)
T ss_dssp EEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECTTSCEEEEEEET
T ss_pred EEEEEEeCCccCccCCEeEEEEEECCCCCCCCCceEEEEEEECCCcEEEEEEEEe
Confidence 46677764 466777888877642 355544 5568999998743
No 66
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=20.75 E-value=59 Score=22.01 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=20.6
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEec
Q 042495 56 METPTAHVITLDIPGMKKDNMKIEVEE 82 (180)
Q Consensus 56 ~e~~~~~~i~~~lPG~~~~dI~V~v~~ 82 (180)
.+++..|.|.+.||.-.-+.+++.|..
T Consensus 32 ~~~~~~Y~itF~~p~~~G~~~ef~v~~ 58 (100)
T 3rd4_A 32 PEITHYYQVTFRLTTDDRKDLVLNIDK 58 (100)
T ss_dssp --CCCEEEEEEEESSSSCEEEEEECCH
T ss_pred CCCceEEEEEEEecCCCCCeEEEEECH
Confidence 366789999999998777778877753
No 67
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius}
Probab=20.66 E-value=1.8e+02 Score=23.55 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCCCeEEEEecCcEEEEEeEEcCCCCcccccc----C-----ceEEEE--eeeceEEEEEEECCCC
Q 042495 72 KKDNMKIEVEENRVLRVSGERKSNDYYKEGVE----G-----EKWHKA--ERTFGKFWRQFRMPMS 126 (180)
Q Consensus 72 ~~~dI~V~v~~~~~L~I~g~~~~~~~~~~~~~----~-----~~~~~~--er~~g~f~r~~~LP~~ 126 (180)
.++++.| ++ +.|+|++.+.... ..... . .++..+ ...+|.|+-++.||..
T Consensus 85 ~~~Nv~v--~d-G~L~I~a~~~~~~--~~~~G~~~~~ytsasg~i~Sk~~~~~yG~~E~r~Klp~~ 145 (324)
T 4awd_A 85 KAENVSV--KK-GCLRIINTVLSPT--EGLDGKPGDKYRLAGGAVASVKNQAHYGYYETRMKASLT 145 (324)
T ss_dssp CGGGEEE--ET-TEEEEECEEEEEE--ECGGGCBSSSEEEEECEEEESCCCBCSEEEEEEEECCSS
T ss_pred cchhEEE--EC-CEEEEEEEeCCCC--cccCCcccccEEEEEEEEEECCccccCcEEEEEEECCCC
Confidence 4555544 57 8999999886410 00001 1 122222 2568999999999975
Done!