RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042495
(180 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 153 bits (388), Expect = 2e-48
Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 14 SPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKK 73
S FD + +PF I+ G A AR DW ETP AHV D+PG+KK
Sbjct: 7 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66
Query: 74 DNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133
+ +K+EVE+ VL VSGER + + +KWH+ ER+ GKF R+FR+ +E VK
Sbjct: 67 EEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 134 AHMKNGILRVTVPKLAEEKKRQPKVINI 161
A ++NG+L VTVPK AE KK + K I I
Sbjct: 123 AGLENGVLTVTVPK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 127 bits (323), Expect = 5e-39
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAE 111
R D E V+ D+PG+ +++++++ +L + GERKS + E E++ + E
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKS----ESSTETERFSRIE 60
Query: 112 RTFGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAE 150
R +G F R+F +P S D + + A +NG+L + +PK
Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 122 bits (307), Expect = 4e-36
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 7/155 (4%)
Query: 8 LMPYTQSPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLD 67
+ + + +E +
Sbjct: 14 MFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAW 73
Query: 68 IPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSV 127
+PG+ K+++ + + L + +R + + +R ++P +V
Sbjct: 74 LPGVNKEDIILNAVGD-TLEIRAKRSPL---MITESERIIYSEIPEEEEIYRTIKLPATV 129
Query: 128 DLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162
E+ A +NG+L V +PK K INI+
Sbjct: 130 KEENASAKFENGVLSVILPKAESSI---KKGINIE 161
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 116 bits (294), Expect = 2e-34
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 25 EEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKKDNMKIEVEENR 84
+ L++ +++G L D E V+ D+ G K+ +K V
Sbjct: 2 YYLGKELQKRSEELSRGF---YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQN 58
Query: 85 VLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLE-HVKAHMKNGILRV 143
L + ER+ + + + R+P +V + + +NG+L +
Sbjct: 59 ELIIEAERE--------ITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTI 110
Query: 144 TVPKLAEEKKR 154
+P +
Sbjct: 111 RIPIAGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 69.4 bits (170), Expect = 3e-16
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGK 116
P + LD+ + + ++V + + V + ++ R +
Sbjct: 8 TDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERP--------DEHGFIAR---E 55
Query: 117 FWRQFRMPMSVDLEHVKAHM-KNGILRVTVPKLAEEKKRQPKVI 159
F R++R+P VD V + + G+L + + +
Sbjct: 56 FHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPA 99
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 68.0 bits (166), Expect = 2e-15
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGK 116
VI LD+ +++ ++V+E+ V + G+ E+ +
Sbjct: 9 SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHN-----------ERQDDHGYISRE 56
Query: 117 FWRQFRMPMSVDLEHVKAHM-KNGILRVTVPKL--AEEKKRQPKVINI 161
F R++R+P +VD + + +G+L + PK+ + + I +
Sbjct: 57 FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 69.6 bits (170), Expect = 2e-15
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 26/160 (16%)
Query: 7 ALMPYTQSPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITL 66
L+ P + P P L ++ + L
Sbjct: 31 HLLESDLFPTSTSLSPFYLRPPSFLR-----------APSWFDTGLSEMRLEKDRFSVNL 79
Query: 67 DIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMS 126
D+ + +K++V + + V G+ + E+ + +F R++R+P
Sbjct: 80 DVKHFSPEELKVKVLGDV-IEVHGKHE-----------ERQDEHGFISREFHRKYRIPAD 127
Query: 127 VDLEHVKAHM-KNGILRVTVPKLAEEKKRQPKVINIDEES 165
VD + + + +G+L V P+ + I I E
Sbjct: 128 VDPLTITSSLSSDGVLTVNGPRKQVSGP--ERTIPITREE 165
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 66.3 bits (162), Expect = 4e-15
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 63 VITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFR 122
+ LD+ + +K++V + V+ V G+ + E+ + +F R++R
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHE-----------ERQDEHGFISREFHRKYR 56
Query: 123 MPMSVDLEHVKAHM-KNGILRVTVPKLAEEKKRQ 155
+P VD + + M +G+L V P+ +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 65.1 bits (159), Expect = 9e-15
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGK 116
T ++LD+ D + ++ ++ V ++G+ + ++ R
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQ--------DEHGYISRC--- 51
Query: 117 FWRQFRMPMSVDLEHVKAHM-KNGILRVTVPK 147
F R++ +P VD V + + G L V P
Sbjct: 52 FTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 62.5 bits (151), Expect = 3e-12
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERT 113
+ H+ P ++K+ + N+V V G E + + +
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGK--------EEKTENASHSE 278
Query: 114 FGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKL 148
+F++ F P VD +A + +G++ V P
Sbjct: 279 HREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPLF 313
Score = 48.3 bits (114), Expect = 3e-07
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 14 SPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKK 73
+ F +M M+ R G A + + ++ K
Sbjct: 68 NAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK--DGRLHFKVYFNVKNFKA 125
Query: 74 DNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133
+ + I+ ++N+ L V ++ + G R +P SVD H++
Sbjct: 126 EEITIKADKNK-LVVRAQKSVACGDA---------AMSESVG---RSIPLPPSVDRNHIQ 172
Query: 134 AHM-KNGILRVTVPKLAEEKKRQP 156
A + + +L + P K
Sbjct: 173 ATITTDDVLVIEAPVNEPNYKAIK 196
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 32.5 bits (74), Expect = 0.015
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYK 99
R ++ + P V+T+ G+ K N+ I+ E L V E D Y
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQI-LSVVIEVPGEDAYY 50
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 32.2 bits (73), Expect = 0.031
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYK 99
+ DW +T + VITL I ++K+++ +E E L + S + Y
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKE-LSALVKLPSGEDYN 57
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.15.1.3
Length = 134
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 47 TLALARADWMET-PTAHVITLDIPGMKKDNMKIEVEENRV 85
LA + D E P + V+ + + + +D ++ E
Sbjct: 16 NLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 27.2 bits (61), Expect = 3.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 1 MASQAIA-LMPYTQSPFFDMMFPMTEEP 27
+A +I + P Q+ FFD + + P
Sbjct: 123 LAFSSINTVQPKAQTTFFDTVKSQLDSP 150
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 26.8 bits (60), Expect = 4.2
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 1 MASQAIA-LMPYTQSPFFDMMFPMTEEP 27
+A +I + P +Q+ FFD + +P
Sbjct: 124 LAFSSINTVQPQSQTTFFDTVKSSLAQP 151
>1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A
{Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A
1og1_A* 1og4_A* 1og3_A*
Length = 226
Score = 26.5 bits (58), Expect = 4.6
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 91 ERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134
+ N K W +A++ + P + H A
Sbjct: 36 DFNMNAKLKVA-----WEEAKKRWNNIKPSRSYPKGFNDFHGTA 74
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 57 ETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGK 116
V ++ + ++E L + YK G+ E W + F
Sbjct: 38 NVRRIGVGEATFSTVRHFFDYLGLDEREWLP-----RCAGGYKLGIRFENWSEPGEYFYH 92
Query: 117 FWRQFRMPMSVDLEHVKAHMKN 138
+ + R+ ++ + +
Sbjct: 93 PFERLRVVDGFNMAEWWLAVGD 114
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 25.7 bits (56), Expect = 10.0
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 33 QTPLTIAKGADHHQTLALARADWMETPTAHV 63
+T L IA+ H + L T +
Sbjct: 260 ETALDIARKKHHKECEELLEQAQAGTFAFPL 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.378
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,804,113
Number of extensions: 162053
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 30
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)