RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042495
(180 letters)
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 103 bits (258), Expect = 3e-29
Identities = 65/148 (43%), Positives = 84/148 (56%), Gaps = 5/148 (3%)
Query: 14 SPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPTAHVITLDIPGMKK 73
S FD + +PF I+ G A AR DW ETP AHV D+PG+KK
Sbjct: 6 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65
Query: 74 DNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVK 133
+ +K+EVE+ VL VSGER K +KWH+ ER+ GKF R+FR+ +E VK
Sbjct: 66 EEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEVK 121
Query: 134 AHMKNGILRVTVPKLAEEKKRQPKVINI 161
A ++NG+L VTVPK AE KK + K I I
Sbjct: 122 AGLENGVLTVTVPK-AEVKKPEVKAIQI 148
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 77.8 bits (191), Expect = 9e-20
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 54 DWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERT 113
+E + +PG+ K+++ + + + + E +
Sbjct: 14 SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER----IIYSEIPE 69
Query: 114 FGKFWRQFRMPMSVDLEHVKAHMKNGILRVTVPKLAEEKKRQPKVINID 162
+ +R ++P +V E+ A +NG+L V +PK K INI+
Sbjct: 70 EEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINIE 115
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 31.1 bits (70), Expect = 0.021
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 52 RADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEG 101
+ DW +T + VITL I ++K+++ +E E + + DY +
Sbjct: 4 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKL 53
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
USP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.6 bits (61), Expect = 0.51
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 52 RADWMET-PTAHVITLDIPGMKKDNMKIEVEENRV 85
+ D E P + V+ + + + +D ++ E
Sbjct: 21 KNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 26.3 bits (58), Expect = 2.3
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 55 WMETPTAHVITLDIPGM 71
+ V T DI M
Sbjct: 52 FDGKEDTFVYTGDIHAM 68
>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 283
Score = 26.0 bits (56), Expect = 2.5
Identities = 9/70 (12%), Positives = 19/70 (27%)
Query: 1 MASQAIALMPYTQSPFFDMMFPMTEEPFRVLEQTPLTIAKGADHHQTLALARADWMETPT 60
+ + + M + P P+ + + ++ R DW
Sbjct: 189 LFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHWD 248
Query: 61 AHVITLDIPG 70
D+PG
Sbjct: 249 LPHTVADVPG 258
>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 223
Score = 25.6 bits (56), Expect = 2.9
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 79 EVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKA 134
++EE L + + N K W +A++ + P + H A
Sbjct: 21 KMEEKAPLLLQEDFNMNAKLKVA-----WEEAKKRWNNIKPSRSYPKGFNDFHGTA 71
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 25.4 bits (55), Expect = 4.1
Identities = 6/76 (7%), Positives = 16/76 (21%)
Query: 78 IEVEENRVLRVSGERKSNDYYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMK 137
+ +++ + + K + + +
Sbjct: 26 VLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFA 85
Query: 138 NGILRVTVPKLAEEKK 153
V V AE +K
Sbjct: 86 PDGDSVNVDIFAEGEK 101
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 24.6 bits (53), Expect = 4.2
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 51 ARADWMETPTAHVITLDIPGMKKDNMKIEVEENRVLRVSGERKSNDYYKEG 101
A A W + I + K N+ E + G + + E
Sbjct: 4 ASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTF-SCLGGSDNFKHLNEI 53
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 24.5 bits (52), Expect = 5.3
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 97 YYKEGVEGEKWHKAERTFGKFWRQFRMPMSVDLEHVKAHMKNG 139
Y V + + + + ++ + V AH G
Sbjct: 71 YVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIG 113
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 23.9 bits (51), Expect = 9.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 106 KWHKAERTFGKFWRQFRMPMSVDL 129
+W K + G FW R +++ L
Sbjct: 133 EWPKEKSKRGLFWANLRAAINIKL 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.378
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 670,559
Number of extensions: 29930
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 17
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)