Query 042496
Match_columns 80
No_of_seqs 120 out of 1174
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 98.2 5.2E-06 1.1E-10 64.0 6.0 60 17-77 412-472 (485)
2 PF00083 Sugar_tr: Sugar (and 97.8 1.1E-05 2.4E-10 58.7 1.8 40 35-74 412-451 (451)
3 KOG0254 Predicted transporter 97.6 0.00012 2.7E-09 55.2 5.1 41 37-77 460-501 (513)
4 PRK10077 xylE D-xylose transpo 97.3 0.00079 1.7E-08 49.3 6.3 44 34-77 432-475 (479)
5 TIGR00887 2A0109 phosphate:H+ 97.0 0.00062 1.4E-08 51.0 3.2 37 35-72 465-501 (502)
6 KOG2532 Permease of the major 94.5 0.18 4E-06 38.7 6.8 73 4-76 159-237 (466)
7 TIGR00879 SP MFS transporter, 94.5 0.051 1.1E-06 38.6 3.5 36 34-69 445-480 (481)
8 KOG0252 Inorganic phosphate tr 94.2 0.032 7E-07 43.8 2.2 40 34-74 473-512 (538)
9 COG2814 AraJ Arabinose efflux 92.3 0.37 8E-06 36.6 5.2 57 4-60 132-189 (394)
10 PRK10489 enterobactin exporter 90.9 0.17 3.6E-06 36.7 2.0 41 33-73 373-413 (417)
11 KOG0253 Synaptic vesicle trans 88.8 0.35 7.7E-06 37.7 2.4 56 12-67 460-527 (528)
12 TIGR00903 2A0129 major facilit 88.7 1.4 3E-05 32.2 5.4 59 5-63 110-169 (368)
13 PRK15403 multidrug efflux syst 88.2 1.4 2.9E-05 32.4 5.1 32 33-64 165-196 (413)
14 TIGR00898 2A0119 cation transp 87.7 0.51 1.1E-05 35.0 2.6 34 35-69 471-504 (505)
15 PRK15402 multidrug efflux syst 86.7 1.9 4.2E-05 31.0 5.1 32 33-64 162-193 (406)
16 TIGR00880 2_A_01_02 Multidrug 84.8 3.5 7.6E-05 24.0 4.9 29 34-62 113-141 (141)
17 PRK10473 multidrug efflux syst 82.5 4 8.7E-05 29.1 5.2 32 33-64 152-183 (392)
18 TIGR01299 synapt_SV2 synaptic 81.6 2.8 6E-05 34.2 4.4 31 36-67 711-741 (742)
19 PRK03545 putative arabinose tr 81.2 5 0.00011 28.7 5.3 46 18-63 142-188 (390)
20 TIGR00710 efflux_Bcr_CflA drug 81.0 5.6 0.00012 27.8 5.4 34 32-65 153-186 (385)
21 PRK10213 nepI ribonucleoside t 79.8 5.3 0.00011 29.1 5.1 59 6-64 141-200 (394)
22 PRK14995 methyl viologen resis 79.5 5.6 0.00012 29.9 5.3 33 32-64 155-187 (495)
23 KOG2533 Permease of the major 78.2 1 2.2E-05 35.0 0.9 62 3-64 164-232 (495)
24 PRK10091 MFS transport protein 77.9 10 0.00022 27.2 6.0 31 33-63 152-182 (382)
25 TIGR00901 2A0125 AmpG-related 77.4 6.9 0.00015 27.5 4.9 27 37-63 156-182 (356)
26 TIGR00893 2A0114 d-galactonate 76.7 7.5 0.00016 26.7 4.9 32 33-64 143-174 (399)
27 TIGR02332 HpaX 4-hydroxyphenyl 76.4 6.5 0.00014 28.8 4.7 30 35-64 165-194 (412)
28 PF10183 ESSS: ESSS subunit of 76.3 5.3 0.00011 24.9 3.6 36 34-69 56-91 (105)
29 TIGR00711 efflux_EmrB drug res 74.7 4 8.7E-05 29.7 3.2 32 33-64 151-182 (485)
30 PRK11902 ampG muropeptide tran 74.5 9.2 0.0002 27.6 5.0 59 4-63 125-185 (402)
31 PRK11010 ampG muropeptide tran 73.4 8.3 0.00018 29.2 4.7 59 4-63 138-198 (491)
32 PF04024 PspC: PspC domain; I 73.2 6.9 0.00015 22.1 3.3 43 17-62 17-59 (61)
33 COG1983 PspC Putative stress-r 71.4 10 0.00022 22.3 3.8 45 17-64 18-65 (70)
34 PRK11102 bicyclomycin/multidru 69.5 14 0.00031 25.9 5.0 31 33-63 140-170 (377)
35 PF07690 MFS_1: Major Facilita 69.4 4 8.7E-05 27.9 2.1 58 5-62 117-175 (352)
36 PRK11273 glpT sn-glycerol-3-ph 68.8 11 0.00025 27.7 4.5 32 32-63 408-440 (452)
37 PRK15011 sugar efflux transpor 68.7 12 0.00027 26.9 4.6 45 19-63 153-198 (393)
38 PRK11646 multidrug resistance 67.8 12 0.00026 27.2 4.4 44 19-62 145-188 (400)
39 TIGR00899 2A0120 sugar efflux 67.8 12 0.00026 26.0 4.3 45 19-63 135-180 (375)
40 PRK10054 putative transporter; 67.1 12 0.00027 27.1 4.4 30 34-63 157-186 (395)
41 TIGR02718 sider_RhtX_FptX side 66.1 19 0.00041 25.7 5.1 32 31-62 156-187 (390)
42 PRK11663 regulatory protein Uh 65.9 15 0.00033 26.9 4.7 31 32-62 171-201 (434)
43 PF11511 RhodobacterPufX: Intr 65.8 11 0.00023 22.1 3.1 32 34-65 27-58 (67)
44 PF01544 CorA: CorA-like Mg2+ 64.5 6.9 0.00015 27.0 2.5 45 14-58 244-289 (292)
45 PRK11663 regulatory protein Uh 64.2 16 0.00034 26.8 4.5 37 29-65 394-430 (434)
46 TIGR00895 2A0115 benzoate tran 63.8 9.1 0.0002 26.6 3.0 31 33-63 166-196 (398)
47 TIGR00881 2A0104 phosphoglycer 63.3 9.6 0.00021 26.2 3.1 30 33-62 145-174 (379)
48 TIGR00712 glpT glycerol-3-phos 62.2 13 0.00027 27.3 3.7 29 34-62 181-209 (438)
49 COG2211 MelB Na+/melibiose sym 61.7 14 0.0003 28.8 3.9 60 2-61 142-209 (467)
50 PRK09874 drug efflux system pr 61.1 29 0.00062 24.6 5.2 30 33-62 167-196 (408)
51 TIGR00712 glpT glycerol-3-phos 60.7 15 0.00032 27.0 3.8 32 32-63 406-437 (438)
52 TIGR00889 2A0110 nucleoside tr 60.1 15 0.00032 27.1 3.7 31 35-65 378-408 (418)
53 PRK09705 cynX putative cyanate 59.8 27 0.00059 25.2 5.0 34 33-66 354-388 (393)
54 TIGR00792 gph sugar (Glycoside 58.2 23 0.00049 25.5 4.3 30 34-63 169-198 (437)
55 TIGR00894 2A0114euk Na(+)-depe 58.2 20 0.00044 26.3 4.1 58 4-61 162-221 (465)
56 PRK11551 putative 3-hydroxyphe 57.6 23 0.00049 25.2 4.3 30 34-63 165-194 (406)
57 PRK10697 DNA-binding transcrip 57.4 16 0.00035 23.4 3.1 43 17-61 22-65 (118)
58 TIGR02978 phageshock_pspC phag 56.6 18 0.00038 23.3 3.2 42 17-61 17-60 (121)
59 TIGR00890 2A0111 Oxalate/Forma 56.5 19 0.00041 24.7 3.6 28 34-61 152-179 (377)
60 PRK11652 emrD multidrug resist 52.0 32 0.00069 24.5 4.2 31 33-63 157-187 (394)
61 KOG0255 Synaptic vesicle trans 51.6 47 0.001 24.9 5.3 29 44-72 477-505 (521)
62 PF13347 MFS_2: MFS/sugar tran 51.2 26 0.00057 25.5 3.8 59 3-61 134-200 (428)
63 PRK09669 putative symporter Ya 50.8 49 0.0011 24.3 5.2 26 36-61 181-206 (444)
64 TIGR00892 2A0113 monocarboxyla 48.5 40 0.00086 25.1 4.4 29 32-60 167-195 (455)
65 COG0598 CorA Mg2+ and Co2+ tra 48.4 23 0.00049 25.8 3.0 20 12-31 270-289 (322)
66 PF01350 Flavi_NS4A: Flaviviru 47.8 20 0.00043 23.9 2.4 29 41-69 98-127 (144)
67 PRK11043 putative transporter; 46.8 90 0.0019 22.2 5.9 29 33-61 155-183 (401)
68 TIGR00900 2A0121 H+ Antiporter 46.5 58 0.0013 22.2 4.7 30 33-62 153-183 (365)
69 TIGR00882 2A0105 oligosacchari 45.7 67 0.0014 22.9 5.1 29 34-62 158-186 (396)
70 PRK11273 glpT sn-glycerol-3-ph 43.7 45 0.00097 24.6 4.0 29 35-63 184-212 (452)
71 PLN00028 nitrate transmembrane 42.7 50 0.0011 24.7 4.2 27 35-61 195-221 (476)
72 TIGR00887 2A0109 phosphate:H+ 42.7 67 0.0014 24.1 4.9 27 35-62 201-227 (502)
73 PRK10077 xylE D-xylose transpo 40.8 98 0.0021 22.5 5.4 29 34-63 190-218 (479)
74 TIGR00383 corA magnesium Mg(2+ 37.0 55 0.0012 23.2 3.5 18 12-29 266-283 (318)
75 TIGR00879 SP MFS transporter, 36.0 56 0.0012 23.1 3.4 29 34-63 192-220 (481)
76 PRK09528 lacY galactoside perm 35.6 81 0.0018 22.8 4.3 34 30-63 374-407 (420)
77 COG3817 Predicted membrane pro 35.5 68 0.0015 23.8 3.8 37 38-74 125-161 (313)
78 PRK10504 putative transporter; 35.4 1.3E+02 0.0029 21.9 5.4 31 33-63 159-189 (471)
79 PRK10642 proline/glycine betai 34.9 58 0.0013 24.4 3.5 28 34-62 188-215 (490)
80 PRK09528 lacY galactoside perm 34.5 62 0.0013 23.4 3.5 29 34-62 166-194 (420)
81 PRK11195 lysophospholipid tran 32.3 1E+02 0.0022 22.3 4.3 29 34-63 149-177 (393)
82 PF07954 DUF1689: Protein of u 32.2 40 0.00086 22.6 2.0 29 3-31 15-43 (152)
83 PRK12382 putative transporter; 32.1 1.2E+02 0.0026 21.5 4.6 29 31-59 361-389 (392)
84 PRK09546 zntB zinc transporter 32.1 66 0.0014 23.2 3.3 16 14-29 274-289 (324)
85 PF05977 MFS_3: Transmembrane 31.1 1E+02 0.0022 24.1 4.4 55 4-58 133-189 (524)
86 KOG1644 U2-associated snRNP A' 30.7 28 0.0006 25.0 1.1 19 3-21 199-217 (233)
87 PRK11085 magnesium/nickel/coba 30.4 76 0.0016 23.4 3.4 40 12-52 264-303 (316)
88 TIGR00898 2A0119 cation transp 29.2 1.1E+02 0.0024 22.6 4.1 26 36-62 241-266 (505)
89 PRK10642 proline/glycine betai 29.2 74 0.0016 23.8 3.3 29 38-67 409-437 (490)
90 KOG2816 Predicted transporter 29.0 1.3E+02 0.0029 23.2 4.6 64 5-68 144-208 (463)
91 PF01306 LacY_symp: LacY proto 28.8 72 0.0016 24.5 3.1 38 28-65 369-406 (412)
92 PRK11462 putative transporter; 27.4 2.2E+02 0.0047 21.4 5.5 27 36-62 181-207 (460)
93 TIGR00788 fbt folate/biopterin 27.3 1E+02 0.0023 23.2 3.8 31 32-63 182-212 (468)
94 PF14147 Spore_YhaL: Sporulati 26.9 1.2E+02 0.0027 16.8 3.3 18 38-55 3-20 (52)
95 PRK06814 acylglycerophosphoeth 26.9 1.2E+02 0.0025 25.3 4.2 30 33-63 169-198 (1140)
96 PF12426 DUF3674: RNA dependen 26.8 38 0.00082 18.0 1.0 10 3-12 3-12 (41)
97 PRK10429 melibiose:sodium symp 25.3 1.1E+02 0.0025 22.7 3.7 25 38-62 180-204 (473)
98 PRK15034 nitrate/nitrite trans 25.1 1.5E+02 0.0032 23.0 4.3 41 36-76 209-251 (462)
99 PRK05122 major facilitator sup 24.5 1.4E+02 0.0031 21.1 3.9 28 32-59 362-389 (399)
100 PTZ00219 Sec61 alpha subunit; 24.4 2.7E+02 0.0058 21.8 5.6 18 60-77 381-398 (474)
101 PF12732 YtxH: YtxH-like prote 23.9 1.5E+02 0.0032 16.7 3.4 27 46-72 7-33 (74)
102 PRK10110 bifunctional PTS syst 23.4 2E+02 0.0043 22.8 4.8 56 3-58 314-370 (530)
103 COG2271 UhpC Sugar phosphate p 23.1 92 0.002 24.4 2.8 35 26-60 401-435 (448)
104 COG2271 UhpC Sugar phosphate p 22.9 1.1E+02 0.0024 24.0 3.2 31 33-63 180-210 (448)
105 PRK03545 putative arabinose tr 22.9 1.4E+02 0.003 21.2 3.6 28 32-59 353-380 (390)
106 COG0282 ackA Acetate kinase [E 22.4 66 0.0014 24.8 1.9 23 57-79 249-271 (396)
107 PF06813 Nodulin-like: Nodulin 21.6 1.5E+02 0.0033 21.0 3.6 44 18-61 46-89 (250)
108 TIGR02004 PTS-IIBC-malX PTS sy 21.0 2.4E+02 0.0051 22.3 4.8 57 2-58 304-361 (517)
109 PRK09952 shikimate transporter 20.8 1.5E+02 0.0032 21.8 3.5 29 34-63 195-223 (438)
110 TIGR02005 PTS-IIBC-alpha PTS s 20.4 2.3E+02 0.0049 22.6 4.5 57 2-58 298-355 (524)
111 PF15628 RRM_DME: RRM in Demet 20.4 76 0.0016 20.0 1.6 17 62-78 63-79 (103)
112 PHA02085 hypothetical protein 20.3 83 0.0018 19.1 1.7 26 3-28 7-32 (87)
113 PF04647 AgrB: Accessory gene 20.1 1.8E+02 0.004 18.9 3.5 25 47-71 107-132 (185)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.16 E-value=5.2e-06 Score=63.95 Aligned_cols=60 Identities=20% Similarity=0.083 Sum_probs=47.3
Q ss_pred hhhhhhhhc-CChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhc
Q 042496 17 SSSLADEIG-DGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL 77 (80)
Q Consensus 17 ~~~~~~~~~-~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~~~~ 77 (80)
.+|+.|.+. .....+.+.+|. ++|++|++.++++.+++|+++||||||+..||.+.++++
T Consensus 412 ~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 412 VNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 456666655 222223456774 899999999999999999999999999999999988764
No 2
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.78 E-value=1.1e-05 Score=58.68 Aligned_cols=40 Identities=38% Similarity=0.495 Sum_probs=35.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASI 74 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~ 74 (80)
.+...+|++++++++++.+++++++|||||++++||+++|
T Consensus 412 ~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 412 LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 3435789999999999999999999999999999999875
No 3
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.59 E-value=0.00012 Score=55.20 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhhc
Q 042496 37 ATPAVVLGALVAVRGVA-FVTFLVPATKGRTLEEIQASITKL 77 (80)
Q Consensus 37 ~~~vF~ifa~i~~v~~v-~~~~~lPETkg~sLeeI~~~~~~~ 77 (80)
..++|++|++++.+... ++++++|||||++++|+++.+.++
T Consensus 460 ~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 460 IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 35789999999999888 899999999999999999988654
No 4
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.33 E-value=0.00079 Score=49.28 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=38.3
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhc
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL 77 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~~~~ 77 (80)
.+++..+|.+++++++++.++.+++.||||+++++|+++.+++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 432 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 56777889999999999988888899999999999999988553
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.02 E-value=0.00062 Score=50.99 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=29.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQA 72 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~ 72 (80)
.+...+|++++++++++.++ ++++|||+++++|||++
T Consensus 465 ~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 465 IWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred ccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 34456889999988887665 46789999999999875
No 6
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.18 Score=38.67 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=53.7
Q ss_pred hhHhhhhhhhhcchhhhhhhhcCC-hhhhhhh-cCchhHHHHHHHHHHHHHHHHHhhccC----CCCCCHHHHHHHHhh
Q 042496 4 PEERLKLEERLIPSSSLADEIGDG-SGMQESD-SSATPAVVLGALVAVRGVAFVTFLVPA----TKGRTLEEIQASITK 76 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~vF~ifa~i~~v~~v~~~~~lPE----Tkg~sLeeI~~~~~~ 76 (80)
|.||-++-+-+...+-+.+-++++ ++.+-++ +||+.+|.++++++++..+..+++.-| .+..+-+|.+.+-.+
T Consensus 159 ~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~ 237 (466)
T KOG2532|consen 159 PNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKG 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhc
Confidence 789999999898888888888874 6666555 899999999999888776655444432 245566776665544
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=94.46 E-value=0.051 Score=38.64 Aligned_cols=36 Identities=39% Similarity=0.562 Sum_probs=30.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE 69 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee 69 (80)
..|+..+|++++++++++.+..+++.||++++++++
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 567778899999999999888888999999988765
No 8
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.032 Score=43.75 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=33.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASI 74 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~ 74 (80)
..|...+|++++++++++.++.+ ++||||+++++|+++..
T Consensus 473 ~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 473 NIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE 512 (538)
T ss_pred cccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence 45677899999999998877655 57799999999997654
No 9
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=92.29 E-value=0.37 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=45.8
Q ss_pred hhHhhhhhhhhcchhhhhhhhcCChhhhhh-hcCchhHHHHHHHHHHHHHHHHHhhcc
Q 042496 4 PEERLKLEERLIPSSSLADEIGDGSGMQES-DSSATPAVVLGALVAVRGVAFVTFLVP 60 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~vF~ifa~i~~v~~v~~~~~lP 60 (80)
|+.|-+--+-++=+.++++-.|-|.+-... .+||..+|++.++++++..+..+..+|
T Consensus 132 p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555556666677888888877776654 479999999999999999999999999
No 10
>PRK10489 enterobactin exporter EntS; Provisional
Probab=90.86 E-value=0.17 Score=36.71 Aligned_cols=41 Identities=0% Similarity=-0.087 Sum_probs=33.4
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQAS 73 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~ 73 (80)
+.+|...++++++++..+..++.+..+|++|+++++|++.+
T Consensus 373 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 373 AMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 34566677888888888878888888999999999998765
No 11
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=88.76 E-value=0.35 Score=37.66 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred hhhcchhhhhhhhcCChhhhhh------------hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 042496 12 ERLIPSSSLADEIGDGSGMQES------------DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTL 67 (80)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sL 67 (80)
-++.|.+-.+..+|..++|... ..+...+-++|+++++++.+.++++--|||||++
T Consensus 460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred CcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 3678999999999988887621 1122345778889999998888888789999975
No 12
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=88.74 E-value=1.4 Score=32.18 Aligned_cols=59 Identities=19% Similarity=0.032 Sum_probs=36.1
Q ss_pred hHhhhhhhhhcchhhhhhhhcCCh-hhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 5 EERLKLEERLIPSSSLADEIGDGS-GMQESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++|-+.-.-..-+..+...++... +.+...+||+.+|++.++++++..+..++++||..
T Consensus 110 ~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 110 ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 444443333333333444444222 22234679999999989998888888888899864
No 13
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=88.17 E-value=1.4 Score=32.41 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=25.2
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
..+||...|++.+++.+++.+..++.+||++.
T Consensus 165 ~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 165 HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 45688899999988888877777777898753
No 14
>TIGR00898 2A0119 cation transport protein.
Probab=87.67 E-value=0.51 Score=34.97 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=24.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE 69 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee 69 (80)
.+...++++++++++++.+. .+++|||++++++|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 471 KWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE 504 (505)
T ss_pred HHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence 34456777887777776555 45789999988754
No 15
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=86.70 E-value=1.9 Score=30.97 Aligned_cols=32 Identities=22% Similarity=-0.003 Sum_probs=25.2
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
...||..+|++.+++++++.+..++..||++.
T Consensus 162 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 162 HVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 35688889999888888877777777888754
No 16
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.82 E-value=3.5 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=22.2
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
..++..+|.+.+++++++.+..++..|||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 113 FLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 45666788888888888878777777764
No 17
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=82.54 E-value=4 Score=29.12 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=24.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
+..||..+|.+.++++++..++.+.+.||++.
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35688888999988888888877777887653
No 18
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=81.63 E-value=2.8 Score=34.18 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 042496 36 SATPAVVLGALVAVRGVAFVTFLVPATKGRTL 67 (80)
Q Consensus 36 g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sL 67 (80)
+...+|++++++.+++.++.+ ++|||+++.|
T Consensus 711 ~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 711 TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 334567777777666555544 5699999864
No 19
>PRK03545 putative arabinose transporter; Provisional
Probab=81.16 E-value=5 Score=28.74 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=29.6
Q ss_pred hhhhhhhcCChh-hhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 18 SSLADEIGDGSG-MQESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.++...++...+ ++.+.+||+.+|++.++++++..+..+...|+.+
T Consensus 142 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 142 TALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334444443333 2334579889999999888887777777777643
No 20
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=81.03 E-value=5.6 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.7
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVPATKGR 65 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~ 65 (80)
.+.+||..+|++.++++++..+..++..||++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 153 LVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3457888889888888888777777778887543
No 21
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=79.81 E-value=5.3 Score=29.05 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=34.4
Q ss_pred HhhhhhhhhcchhhhhhhhcCChhh-hhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 6 ERLKLEERLIPSSSLADEIGDGSGM-QESDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
+|-+.-....-..++...++...+- +.+.+||..+|++.++++++..++.....||+++
T Consensus 141 ~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 141 TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 3434333333334445555533332 2235788889998888777766666666787643
No 22
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=79.53 E-value=5.6 Score=29.88 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=25.9
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
.+.+||.++|++...++++..+..++++|+.++
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 346789999999888888888888888887543
No 23
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=78.23 E-value=1 Score=35.01 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=42.7
Q ss_pred ChhHhhhhhhhhcchhhhhhhhcCChhhh-------hhhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 3 RPEERLKLEERLIPSSSLADEIGDGSGMQ-------ESDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
+++||-+.-.-...++++.+..|.-.+.. ....||++.|++-++++++..+++++++|+-..
T Consensus 164 ~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 164 GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 34566555555666666666666322222 124588899999999999999999999997544
No 24
>PRK10091 MFS transport protein AraJ; Provisional
Probab=77.90 E-value=10 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=24.0
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..+||..+|.+.++++++..+..+++.||.+
T Consensus 152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568888999988887777777777788854
No 25
>TIGR00901 2A0125 AmpG-related permease.
Probab=77.43 E-value=6.9 Score=27.45 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 37 ATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 37 ~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
|..+|++.+++.++..+..++..||+.
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 888898888877776666665667753
No 26
>TIGR00893 2A0114 d-galactonate transporter.
Probab=76.69 E-value=7.5 Score=26.66 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=23.6
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
...+|+.+|.+.++++++..+..++..|+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 45688888888888877777777777776544
No 27
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=76.38 E-value=6.5 Score=28.75 Aligned_cols=30 Identities=10% Similarity=-0.028 Sum_probs=24.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
.||+.+|++.++.+++..+..++++||++.
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 588899999888888777777888888763
No 28
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=76.25 E-value=5.3 Score=24.88 Aligned_cols=36 Identities=11% Similarity=-0.111 Sum_probs=24.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE 69 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee 69 (80)
..+|..+|++...++++...+.+.+.|+|+-++...
T Consensus 56 ~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~ 91 (105)
T PF10183_consen 56 WEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWAR 91 (105)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456667777766666666677777889998766433
No 29
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=74.74 E-value=4 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=24.3
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg 64 (80)
+.+||.++|++.+.++++..+...+..|+++.
T Consensus 151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred cCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 45788889998888887777777777777543
No 30
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=74.46 E-value=9.2 Score=27.59 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=32.6
Q ss_pred hhHhhhhhhhhcchhhhhhhhcCChhhhhhh--cCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 4 PEERLKLEERLIPSSSLADEIGDGSGMQESD--SSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++||-+.-.-..-..+++.-++.+......+ +||..+|++.+++.++..+ ..+..||++
T Consensus 125 ~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~ 185 (402)
T PRK11902 125 PEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPE 185 (402)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence 3445443333333345555555544433323 4888888888887766544 345667663
No 31
>PRK11010 ampG muropeptide transporter; Validated
Probab=73.35 E-value=8.3 Score=29.18 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=33.5
Q ss_pred hhHhhhhhhhhcchhhhhhhhcCChhhhhhh--cCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 4 PEERLKLEERLIPSSSLADEIGDGSGMQESD--SSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++||-+.-.-..-+.+++..++........+ +||..+|++.++..++..+..+ +.||+.
T Consensus 138 ~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 138 AEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 3555554444444444455555433332223 5888999998887776655444 467763
No 32
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=73.25 E-value=6.9 Score=22.12 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=25.4
Q ss_pred hhhhhhhhcCChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 17 SSSLADEIGDGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
|++++.-+|.++... .+-+ .+..++....++..+..++.+|+-
T Consensus 17 caGlA~~~gid~~~v--Rl~~-v~l~~~~~~~~l~Y~~~w~~lP~~ 59 (61)
T PF04024_consen 17 CAGLAEYFGIDPTLV--RLIF-VVLTFFTGGGILLYLILWLLLPKE 59 (61)
T ss_pred HHHHHHHHCcCHHHH--HHHH-HHHHHHHhHHHHHHHHHHHHcCCC
Confidence 678889999888876 2211 111222223556666677888863
No 33
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=71.36 E-value=10 Score=22.31 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=27.0
Q ss_pred hhhhhhhhcCChhhhhhhcCchhHHHHHH---HHHHHHHHHHHhhccCCCC
Q 042496 17 SSSLADEIGDGSGMQESDSSATPAVVLGA---LVAVRGVAFVTFLVPATKG 64 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~vF~ifa---~i~~v~~v~~~~~lPETkg 64 (80)
|.+|++.++.++.... +-+ .++.++. +..++..+..++.+|+-.+
T Consensus 18 cgGla~yf~id~tlVR--ll~-vl~~~~~~~~~~~ii~Yiia~~imP~~~~ 65 (70)
T COG1983 18 CGGLAEYFGIDPTLVR--LLF-VLLTLFGGLTGFGIIAYIIAALIMPSEED 65 (70)
T ss_pred ehhHHHHhCCChHHHH--HHH-HHHHHHhcchhHHHHHHHHHHHHCCCCcc
Confidence 6789999999888772 211 1111221 2345666777888887554
No 34
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=69.52 E-value=14 Score=25.90 Aligned_cols=31 Identities=29% Similarity=0.215 Sum_probs=23.8
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..+||..+|.+.++++++..+...+..||++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 3568888898888888887777777778753
No 35
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=69.42 E-value=4 Score=27.93 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=32.1
Q ss_pred hHhhhhhhhhcchhhhhhhhcCChhhh-hhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 5 EERLKLEERLIPSSSLADEIGDGSGMQ-ESDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
++|-+.-...--...+...++...+-. .+.+||..+|++.+++++++.+....+.+++
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 117 EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 345544444444445555555333222 2356777899999998888877555555543
No 36
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=68.76 E-value=11 Score=27.73 Aligned_cols=32 Identities=3% Similarity=-0.060 Sum_probs=22.1
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHH-hhccCCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVT-FLVPATK 63 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~-~~lPETk 63 (80)
.+.+|+...|.+.+++++++++... +..+|+|
T Consensus 408 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 408 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4456778888888888888777655 4445544
No 37
>PRK15011 sugar efflux transporter B; Provisional
Probab=68.70 E-value=12 Score=26.88 Aligned_cols=45 Identities=22% Similarity=0.120 Sum_probs=30.9
Q ss_pred hhhhhhcCChhhhh-hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 19 SLADEIGDGSGMQE-SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++..-++...+-.. +.+||..+|.+.++.+++..+.+++++||.+
T Consensus 153 ~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 153 SLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 34555554444333 3579988898888888887777777788764
No 38
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=67.79 E-value=12 Score=27.22 Aligned_cols=44 Identities=27% Similarity=0.242 Sum_probs=26.3
Q ss_pred hhhhhhcCChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 19 SLADEIGDGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 19 ~~~~~~~~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
++...++...+-....+||+.+|++.++++++..+...+..|+.
T Consensus 145 ~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 145 SAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444443322222267888888888877777666655666764
No 39
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=67.76 E-value=12 Score=26.02 Aligned_cols=45 Identities=24% Similarity=0.126 Sum_probs=29.7
Q ss_pred hhhhhhcCChhh-hhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 19 SLADEIGDGSGM-QESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++...++...+- +.+.+||+.+|++.++++++..+..++++||.+
T Consensus 135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344445443322 223578888999998888887777777788754
No 40
>PRK10054 putative transporter; Provisional
Probab=67.06 E-value=12 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.6
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..|+..+|.+.+++++++.+...+++|+++
T Consensus 157 ~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 157 MQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467888898888887777666666666553
No 41
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=66.08 E-value=19 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=22.9
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 31 QESDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 31 ~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
+.+.+||+.+|++.++..++..+..++..|++
T Consensus 156 l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 156 LFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44567988999999988877666665555543
No 42
>PRK11663 regulatory protein UhpC; Provisional
Probab=65.89 E-value=15 Score=26.91 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=21.4
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
...+||+.+|++.++++++..+..++++||+
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3467888899888877766655555556654
No 43
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=65.83 E-value=11 Score=22.13 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=20.4
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGR 65 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~ 65 (80)
..|+..+|++-..+.+++..++-..+||..+.
T Consensus 27 Gag~Aav~~~~~~~~l~~~~~iG~~LPe~s~~ 58 (67)
T PF11511_consen 27 GAGYAAVFFLGLWFLLVALYFIGLLLPERSRQ 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSTTTCSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 34555566665556666666677889987653
No 44
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=64.51 E-value=6.9 Score=26.95 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=22.0
Q ss_pred hcchhhhhhhhcCChh-hhhhhcCchhHHHHHHHHHHHHHHHHHhh
Q 042496 14 LIPSSSLADEIGDGSG-MQESDSSATPAVVLGALVAVRGVAFVTFL 58 (80)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~g~~~vF~ifa~i~~v~~v~~~~~ 58 (80)
.+|.+=++-.+|++.. |-...+.+++.|++..+++++..+..+++
T Consensus 244 flPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 289 (292)
T PF01544_consen 244 FLPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAILLYWW 289 (292)
T ss_dssp HHHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777778887766 43334444444544444444444444443
No 45
>PRK11663 regulatory protein UhpC; Provisional
Probab=64.18 E-value=16 Score=26.82 Aligned_cols=37 Identities=14% Similarity=-0.086 Sum_probs=26.9
Q ss_pred hhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496 29 GMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGR 65 (80)
Q Consensus 29 ~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~ 65 (80)
+.+.+..|+..+|.+.+++++++.+..+++.++.+++
T Consensus 394 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 394 AKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3445567888899998888888877777666665543
No 46
>TIGR00895 2A0115 benzoate transport.
Probab=63.76 E-value=9.1 Score=26.57 Aligned_cols=31 Identities=6% Similarity=0.090 Sum_probs=22.8
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
+..||+.+|.+.++++++..+..+.++||+.
T Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 166 PVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 4567778888887777777777777788764
No 47
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=63.31 E-value=9.6 Score=26.19 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=21.5
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
...+|..+|.+.++++++..+..+++.||+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 356777888888877777667777667664
No 48
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=62.17 E-value=13 Score=27.32 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=22.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
..||+.+|++.++++++..+..++++||+
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45788899998888888777777777765
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=61.73 E-value=14 Score=28.84 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=33.5
Q ss_pred CChhHhhhhhhhhcchhhhhhhhcC--Chhhh----h--hhcCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 2 ERPEERLKLEERLIPSSSLADEIGD--GSGMQ----E--SDSSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~--~~~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
..|+||.+|..-=.=.+++++.+.. ..+++ . ...|+..+..+++++.++..+++++-..|
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3689999986543333333333221 11111 0 13466677777777777777777765544
No 50
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=61.14 E-value=29 Score=24.58 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=22.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
+..||..+|++.+++.+++.+..++++||.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 167 DSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356888889988888887777777777764
No 51
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=60.75 E-value=15 Score=26.95 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=26.2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.+..|+..+|.+.+++++++.+...+++||.|
T Consensus 406 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 406 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788888888888888898899999866
No 52
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=60.09 E-value=15 Score=27.09 Aligned_cols=31 Identities=3% Similarity=-0.182 Sum_probs=25.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATKGR 65 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~ 65 (80)
+||..+|.+.+++++++.+..+++++|+++.
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 3566788888888888888888889988764
No 53
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=59.82 E-value=27 Score=25.21 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=24.3
Q ss_pred hhcC-chhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 042496 33 SDSS-ATPAVVLGALVAVRGVAFVTFLVPATKGRT 66 (80)
Q Consensus 33 ~~~g-~~~vF~ifa~i~~v~~v~~~~~lPETkg~s 66 (80)
+..| +...|.+.++++++..+..+...|||+++-
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 3444 345666777777777777888999998764
No 54
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=58.24 E-value=23 Score=25.49 Aligned_cols=30 Identities=13% Similarity=-0.018 Sum_probs=22.4
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..||..++.++++++.+..+..++..+|.+
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 356777888888888887777777777754
No 55
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=58.19 E-value=20 Score=26.31 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=31.2
Q ss_pred hhHhhhhhhhhcchhhhhhhhcCCh-hhhhhh-cCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 4 PEERLKLEERLIPSSSLADEIGDGS-GMQESD-SSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
+++|-+.-.-..-+..+...++... +.+... .||+.+|.+.++++++..+..+.+.+|
T Consensus 162 ~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 162 PKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 4555444333333344444444222 122234 388889998888777766666655554
No 56
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=57.65 E-value=23 Score=25.24 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=21.4
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..+|..+|++.+++.++..+....++||+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 457777888887776766666667778764
No 57
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=57.39 E-value=16 Score=23.44 Aligned_cols=43 Identities=5% Similarity=-0.031 Sum_probs=25.4
Q ss_pred hhhhhhhhcCChhhhhhhcCchh-HHHHHHHHHHHHHHHHHhhccC
Q 042496 17 SSSLADEIGDGSGMQESDSSATP-AVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~-vF~ifa~i~~v~~v~~~~~lPE 61 (80)
|++|+.-++.++.... +.+-. +|+-..+..+++.+..|+.+|.
T Consensus 22 CaGiA~y~gi~~~~VR--l~~vl~~~~~~~~~~~~~Yi~l~~~lp~ 65 (118)
T PRK10697 22 CAGIAHYFDVPVKLVR--IIVVLSIFFGLFVFTLVAYIILSFALDP 65 (118)
T ss_pred HHHHHHHHCCCHHHHH--HHHHHHHHHhhchHHHHHHHHHHHhccC
Confidence 7889999999888772 22111 1111123455666777777764
No 58
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=56.64 E-value=18 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=23.6
Q ss_pred hhhhhhhhcCChhhhhhhcCchhHHHHHHH--HHHHHHHHHHhhccC
Q 042496 17 SSSLADEIGDGSGMQESDSSATPAVVLGAL--VAVRGVAFVTFLVPA 61 (80)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~vF~ifa~--i~~v~~v~~~~~lPE 61 (80)
|++|++-+|.++... -+.+ .+..++++ ..++..++.++.+|+
T Consensus 17 caGlA~y~gi~~~~V--Rl~~-vl~~~~~~~~~~ll~Y~i~w~~lp~ 60 (121)
T TIGR02978 17 CAGLADYFGVEVWLV--RILV-VSALLFGGGFFVLVAYIALWLLLDK 60 (121)
T ss_pred HHHHHHHHCcCHHHH--HHHH-HHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 688999999888876 2211 11111211 233446667777764
No 59
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=56.48 E-value=19 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=20.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
..||+.+|.+.++.+++..+..++++++
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 152 LEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 4578888888888888777766666543
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=52.00 E-value=32 Score=24.51 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=22.4
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
+..||..+|++.+++.++..+...++.||++
T Consensus 157 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 157 TLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 3568888888887777666666666778864
No 61
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=51.56 E-value=47 Score=24.92 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 042496 44 GALVAVRGVAFVTFLVPATKGRTLEEIQA 72 (80)
Q Consensus 44 fa~i~~v~~v~~~~~lPETkg~sLeeI~~ 72 (80)
++..+.+....+..++|||+++.+.+-..
T Consensus 477 ~~~~~~l~~~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 477 FGWLALLLGLLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCCchhHH
Confidence 56677777777779999999998766433
No 62
>PF13347 MFS_2: MFS/sugar transport protein
Probab=51.24 E-value=26 Score=25.54 Aligned_cols=59 Identities=17% Similarity=0.055 Sum_probs=34.9
Q ss_pred ChhHhhhhhhhhcchhhhhhhhcCChhh-hhhhc-------CchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 3 RPEERLKLEERLIPSSSLADEIGDGSGM-QESDS-------SATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
.++||.++-..-.=.+.++..+...... +...+ ++...+++++++.+++.+..++..+|
T Consensus 134 ~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 134 DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 4788888866543344444432111110 10111 45667778888888888888888888
No 63
>PRK09669 putative symporter YagG; Provisional
Probab=50.85 E-value=49 Score=24.25 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 36 SATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 36 g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
|+..++.++++++++..+.+++..+|
T Consensus 181 g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 181 GYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 44456777777776666666655444
No 64
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=48.46 E-value=40 Score=25.06 Aligned_cols=29 Identities=3% Similarity=-0.060 Sum_probs=20.1
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhcc
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVP 60 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lP 60 (80)
...+||..+|++.+++++++.+..++..+
T Consensus 167 ~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 167 FESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678889999998887766555444433
No 65
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=48.40 E-value=23 Score=25.76 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.0
Q ss_pred hhhcchhhhhhhhcCChhhh
Q 042496 12 ERLIPSSSLADEIGDGSGMQ 31 (80)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (80)
.-+.|.+-++-.||++...+
T Consensus 270 ~iflPpTlIagiyGMNf~~m 289 (322)
T COG0598 270 TIFLPPTLITGFYGMNFKGM 289 (322)
T ss_pred HHHHhhHHHHcccccCCCCC
Confidence 34678888899999877743
No 66
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=47.75 E-value=20 Score=23.93 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-CCCCHHH
Q 042496 41 VVLGALVAVRGVAFVTFLVPAT-KGRTLEE 69 (80)
Q Consensus 41 F~ifa~i~~v~~v~~~~~lPET-kg~sLee 69 (80)
..-.|++.++.+++....+||+ ++||..|
T Consensus 98 ~~~IAg~~lv~filmvVLiPEpg~QRS~~D 127 (144)
T PF01350_consen 98 PGQIAGVLLVFFILMVVLIPEPGKQRSQQD 127 (144)
T ss_pred HHHhHHHHHHHHHHHHhcccCCCCcCCccc
Confidence 3344667777777777889998 5667655
No 67
>PRK11043 putative transporter; Provisional
Probab=46.76 E-value=90 Score=22.23 Aligned_cols=29 Identities=7% Similarity=-0.120 Sum_probs=19.4
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
+..||+.+|++.+++.++..+..++..++
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45788888888887777766555444433
No 68
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=46.48 E-value=58 Score=22.20 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=17.7
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHh-hccCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTF-LVPAT 62 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~-~lPET 62 (80)
..+||..+|++.++..+++.+..+. ..|+.
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 153 ATLGIKWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 3568777887776666655544433 34443
No 69
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=45.73 E-value=67 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=20.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
+++++..|++.++++++..+..+...|++
T Consensus 158 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 158 SIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56888888888887777766665555553
No 70
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=43.74 E-value=45 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=21.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.||+.+|++.++++++..+...+++||+.
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 37777888888877777677777777653
No 71
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=42.69 E-value=50 Score=24.73 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=19.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
.||+.+|++.++++++..+..+++.++
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 478899999988888776666655444
No 72
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=42.69 E-value=67 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=16.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 35 SSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 35 ~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
++|...|++-++.+ +..++..+++||+
T Consensus 201 ~~WR~~~~~~~ip~-~i~~~~~~~lpES 227 (502)
T TIGR00887 201 YMWRILIGFGAVPA-LLALYFRLTIPET 227 (502)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHhCCCC
Confidence 46777775544443 3444455778997
No 73
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=40.78 E-value=98 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.6
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.+||+.+|++.++..++.. ...+++||+.
T Consensus 190 ~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~ 218 (479)
T PRK10077 190 TDGWRYMFASEAIPALLFL-MLLYFVPETP 218 (479)
T ss_pred cCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence 5688888888777666654 4466789874
No 74
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.97 E-value=55 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=13.1
Q ss_pred hhhcchhhhhhhhcCChh
Q 042496 12 ERLIPSSSLADEIGDGSG 29 (80)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (80)
.=..|.+=++-.||++..
T Consensus 266 ~IflP~t~IaGiyGMNf~ 283 (318)
T TIGR00383 266 TIFIPLTFIAGIYGMNFK 283 (318)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 345677888888887765
No 75
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=36.00 E-value=56 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=17.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
..||+.+|++.+...++ .+...+++||+.
T Consensus 192 ~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~ 220 (481)
T TIGR00879 192 TLGWRIPLGLQLIPAGL-LFLGLFFLPESP 220 (481)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence 45777788885544444 444556678763
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=35.59 E-value=81 Score=22.76 Aligned_cols=34 Identities=3% Similarity=-0.071 Sum_probs=23.4
Q ss_pred hhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 30 MQESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 30 ~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.+.+.+|+..+|.+.+++.++..++..+..++.+
T Consensus 374 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 374 NLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3344568888888888888777776666665543
No 77
>COG3817 Predicted membrane protein [Function unknown]
Probab=35.51 E-value=68 Score=23.77 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 042496 38 TPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASI 74 (80)
Q Consensus 38 ~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~ 74 (80)
..++.-.+..|+++.+..++...+|..+.+.|-.+..
T Consensus 125 natl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl~ 161 (313)
T COG3817 125 NATLMALGIAAIVATVLACVMTKQTPKAAVQEARRLM 161 (313)
T ss_pred chhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 3577777788888888888877787777777755543
No 78
>PRK10504 putative transporter; Provisional
Probab=35.41 E-value=1.3e+02 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=22.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
+..||.++|.+...++.++.+......|+.+
T Consensus 159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 159 EYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3578888898888777777777777777653
No 79
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=34.89 E-value=58 Score=24.35 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=18.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
.+||..+|++.+.+.++ .++....+||+
T Consensus 188 ~~gWR~~f~i~~~~~l~-~~~~~~~~~es 215 (490)
T PRK10642 188 DWGWRIPFFIALPLGII-GLYLRHALEET 215 (490)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 57888888886655554 34445678886
No 80
>PRK09528 lacY galactoside permease; Reviewed
Probab=34.53 E-value=62 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=19.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
+.++..+|++.++.++++.+..++..|+.
T Consensus 166 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 166 NINPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 45777888888777777666665555443
No 81
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=32.26 E-value=1e+02 Score=22.33 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=13.7
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
++.+..++++.+...+++ ....+++||.+
T Consensus 149 ~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 149 DPHAEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 334444454444433333 34456677653
No 82
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=32.20 E-value=40 Score=22.58 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=18.7
Q ss_pred ChhHhhhhhhhhcchhhhhhhhcCChhhh
Q 042496 3 RPEERLKLEERLIPSSSLADEIGDGSGMQ 31 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (80)
.+++|++|+..+-..+.=-+.+|++.++.
T Consensus 15 ~~~DR~eL~~~~q~i~~~~~~~g~~~~~~ 43 (152)
T PF07954_consen 15 DHEDRLELAKDLQSIARKSNLGGYGGFMA 43 (152)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999887765555555555554444
No 83
>PRK12382 putative transporter; Provisional
Probab=32.07 E-value=1.2e+02 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=20.6
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 042496 31 QESDSSATPAVVLGALVAVRGVAFVTFLV 59 (80)
Q Consensus 31 ~~~~~g~~~vF~ifa~i~~v~~v~~~~~l 59 (80)
+.+..|+...|.+.+++.+++.+...+..
T Consensus 361 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 361 LATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 33457888888888888887777665543
No 84
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.07 E-value=66 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=11.2
Q ss_pred hcchhhhhhhhcCChh
Q 042496 14 LIPSSSLADEIGDGSG 29 (80)
Q Consensus 14 ~~~~~~~~~~~~~~~~ 29 (80)
.+|-+=++-.||++..
T Consensus 274 flPlT~IaGiyGMNf~ 289 (324)
T PRK09546 274 FLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHhhhccccC
Confidence 4566777777887765
No 85
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=31.13 E-value=1e+02 Score=24.10 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=30.6
Q ss_pred hhHhhhhhhhhcch-hhhhhhhcCChh-hhhhhcCchhHHHHHHHHHHHHHHHHHhh
Q 042496 4 PEERLKLEERLIPS-SSLADEIGDGSG-MQESDSSATPAVVLGALVAVRGVAFVTFL 58 (80)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~g~~~vF~ifa~i~~v~~v~~~~~ 58 (80)
|+|++.-++.+... .+++..+|+..+ .+...+|...+|.+-++..+++.......
T Consensus 133 ~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 133 PKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555554432 345666664443 33445677778887776666554444433
No 86
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=30.72 E-value=28 Score=24.95 Aligned_cols=19 Identities=47% Similarity=0.658 Sum_probs=17.3
Q ss_pred ChhHhhhhhhhhcchhhhh
Q 042496 3 RPEERLKLEERLIPSSSLA 21 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (80)
-||+|.+++++..+.++++
T Consensus 199 t~e~~~~iK~ai~~a~sl~ 217 (233)
T KOG1644|consen 199 TPEDREKIKEAIKNASSLA 217 (233)
T ss_pred CHHHHHHHHHHHHhcccHH
Confidence 4799999999999999986
No 87
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.37 E-value=76 Score=23.38 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=21.7
Q ss_pred hhhcchhhhhhhhcCChhhhhhhcCchhHHHHHHHHHHHHH
Q 042496 12 ERLIPSSSLADEIGDGSGMQESDSSATPAVVLGALVAVRGV 52 (80)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~vF~ifa~i~~v~~ 52 (80)
.-..|.+-++-.||++...+- ...|++.|++..++++++.
T Consensus 264 ~if~pptliagiyGMNf~~mP-~~~~~~g~~~~l~~~~~~~ 303 (316)
T PRK11085 264 VVFLPPTLVASSYGMNFEFMP-ELKWSFGYPGAIILMILAG 303 (316)
T ss_pred HHHHHHHHHHhhcccccCCCC-CCCCcHHHHHHHHHHHHHH
Confidence 335688888888998866331 3334434444333333333
No 88
>TIGR00898 2A0119 cation transport protein.
Probab=29.18 E-value=1.1e+02 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 36 SATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 36 g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
+|...|++.++.+++..+.. +++||+
T Consensus 241 ~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 241 DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 36677877777766655544 678886
No 89
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=29.18 E-value=74 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 042496 38 TPAVVLGALVAVRGVAFVTFLVPATKGRTL 67 (80)
Q Consensus 38 ~~vF~ifa~i~~v~~v~~~~~lPETkg~sL 67 (80)
..++++.+++++++.+ ..+++|||++..+
T Consensus 409 ~~~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 409 MMPAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred hHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 3444444445554444 4456799987655
No 90
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=28.98 E-value=1.3e+02 Score=23.21 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=40.0
Q ss_pred hHhhhhhhhhcchhhhhhhhcCChhhhh-hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 042496 5 EERLKLEERLIPSSSLADEIGDGSGMQE-SDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLE 68 (80)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLe 68 (80)
|+|.+--.-+-++=+....++...+-.. ...|...+|++-++..+...++..+++||+...+.+
T Consensus 144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 4555544444444444445543222221 235666788888888889999999999998765544
No 91
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=28.78 E-value=72 Score=24.47 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=27.5
Q ss_pred hhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496 28 SGMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGR 65 (80)
Q Consensus 28 ~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~ 65 (80)
.+.+-+++|.+.+|++.+++.+...++.++.++..+..
T Consensus 369 ~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 369 AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 34445677878899999999888888888888766543
No 92
>PRK11462 putative transporter; Provisional
Probab=27.36 E-value=2.2e+02 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 36 SATPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 36 g~~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
|+.....+++++.+++...++...+|.
T Consensus 181 g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 181 GFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 334455566666555555555545553
No 93
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=27.30 E-value=1e+02 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=22.8
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
...+||+.+|++.++..++. .+...++||.+
T Consensus 182 ~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 182 LDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 34568888888888887776 55567788864
No 94
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=26.87 E-value=1.2e+02 Score=16.80 Aligned_cols=18 Identities=17% Similarity=-0.108 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 042496 38 TPAVVLGALVAVRGVAFV 55 (80)
Q Consensus 38 ~~vF~ifa~i~~v~~v~~ 55 (80)
+++|++.+++.+.+..++
T Consensus 3 wWvY~vi~gI~~S~ym~v 20 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAV 20 (52)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 467777766655554443
No 95
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=26.86 E-value=1.2e+02 Score=25.28 Aligned_cols=30 Identities=10% Similarity=-0.050 Sum_probs=15.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
...||..+| +.+++..+..+.+++++|+++
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 169 ISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 345665555 444444444455556666653
No 96
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=26.82 E-value=38 Score=17.95 Aligned_cols=10 Identities=50% Similarity=0.660 Sum_probs=7.8
Q ss_pred ChhHhhhhhh
Q 042496 3 RPEERLKLEE 12 (80)
Q Consensus 3 ~~~~~~~~~~ 12 (80)
++|||-.|||
T Consensus 3 k~eER~aLEA 12 (41)
T PF12426_consen 3 KTEERSALEA 12 (41)
T ss_pred chhHHHHHHH
Confidence 6788888875
No 97
>PRK10429 melibiose:sodium symporter; Provisional
Probab=25.26 E-value=1.1e+02 Score=22.70 Aligned_cols=25 Identities=4% Similarity=-0.173 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCC
Q 042496 38 TPAVVLGALVAVRGVAFVTFLVPAT 62 (80)
Q Consensus 38 ~~vF~ifa~i~~v~~v~~~~~lPET 62 (80)
..+..+++++.+++.+.+++..+|.
T Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 180 QMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceec
Confidence 3445555566555555666556653
No 98
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=25.10 E-value=1.5e+02 Score=23.02 Aligned_cols=41 Identities=5% Similarity=-0.091 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHhh
Q 042496 36 SATPAVVLGALVAVRGVAFVTFLVPATK--GRTLEEIQASITK 76 (80)
Q Consensus 36 g~~~vF~ifa~i~~v~~v~~~~~lPETk--g~sLeeI~~~~~~ 76 (80)
+++.++++++...++..+..++..++.+ ..++.+.-..++.
T Consensus 209 ~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~ 251 (462)
T PRK15034 209 SLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQR 251 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCC
Confidence 3566777888888777777777666643 3456665554544
No 99
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=24.50 E-value=1.4e+02 Score=21.11 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=19.4
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLV 59 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~l 59 (80)
.+.+|+...|.+.+++++++.+..++..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 362 ASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456877888888888787766655443
No 100
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=24.45 E-value=2.7e+02 Score=21.77 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=13.8
Q ss_pred cCCCCCCHHHHHHHHhhc
Q 042496 60 PATKGRTLEEIQASITKL 77 (80)
Q Consensus 60 PETkg~sLeeI~~~~~~~ 77 (80)
-|+.|.+-+|+.+.+++.
T Consensus 381 v~~sg~~p~~iA~~lkk~ 398 (474)
T PTZ00219 381 IEVSGSSAKDVAKQLKDQ 398 (474)
T ss_pred HHHhCCCHHHHHHHHHHc
Confidence 467788888888888664
No 101
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.92 E-value=1.5e+02 Score=16.74 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHH
Q 042496 46 LVAVRGVAFVTFLVPATKGRTLEEIQA 72 (80)
Q Consensus 46 ~i~~v~~v~~~~~lPETkg~sLeeI~~ 72 (80)
+-.+++.+..+++-|+.-..+.+++..
T Consensus 7 ~Ga~~Ga~~glL~aP~sG~e~R~~l~~ 33 (74)
T PF12732_consen 7 AGAAAGAAAGLLFAPKSGKETREKLKD 33 (74)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 344566777788888765445444443
No 102
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=23.42 E-value=2e+02 Score=22.82 Aligned_cols=56 Identities=25% Similarity=0.211 Sum_probs=35.3
Q ss_pred ChhHhhhhhhhhcchhhhhhhhcCChhhhhhh-cCchhHHHHHHHHHHHHHHHHHhh
Q 042496 3 RPEERLKLEERLIPSSSLADEIGDGSGMQESD-SSATPAVVLGALVAVRGVAFVTFL 58 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~vF~ifa~i~~v~~v~~~~~ 58 (80)
+||.|.|.+.-++|..--..--|.-++...+- +--+..|++++..+.++..+.+.+
T Consensus 314 ~~enrk~v~~~l~~aa~ts~ltGITEPiEF~FlFvaP~L~~vha~l~g~~~~~~~~l 370 (530)
T PRK10110 314 RPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVL 370 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999998888754444444444443212 111456777888877777776654
No 103
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.09 E-value=92 Score=24.44 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=23.2
Q ss_pred CChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhcc
Q 042496 26 DGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVP 60 (80)
Q Consensus 26 ~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lP 60 (80)
.+.++..+.+||.+.|.++.+.++++.+......-
T Consensus 401 ~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 401 LPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred CcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 33444434578889999988888777776554443
No 104
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.89 E-value=1.1e+02 Score=23.99 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=23.1
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 33 SDSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.+.+|...|++=++++++..++.++.+.+|.
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457778888888888888888887776653
No 105
>PRK03545 putative arabinose transporter; Provisional
Probab=22.88 E-value=1.4e+02 Score=21.23 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=21.2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 042496 32 ESDSSATPAVVLGALVAVRGVAFVTFLV 59 (80)
Q Consensus 32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~l 59 (80)
.+.+|+..+|.+.+++.+++.++.+...
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 353 SLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 3467888888888888888877766654
No 106
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=22.36 E-value=66 Score=24.83 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.6
Q ss_pred hhccCCCCCCHHHHHHHHhhccC
Q 042496 57 FLVPATKGRTLEEIQASITKLSG 79 (80)
Q Consensus 57 ~~lPETkg~sLeeI~~~~~~~~~ 79 (80)
.++-++.|.|.+++...+.+++|
T Consensus 249 ~~l~~~~~~s~~~i~~~LNkkSG 271 (396)
T COG0282 249 LYLMEQEGMSAEEIDTLLNKKSG 271 (396)
T ss_pred HHHHHhcCCCHHHHHHHHhhhcc
Confidence 45567889999999999999887
No 107
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=21.60 E-value=1.5e+02 Score=20.96 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=30.6
Q ss_pred hhhhhhhcCChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccC
Q 042496 18 SSLADEIGDGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPA 61 (80)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPE 61 (80)
.++....|..++++.+.+|.+.+..+-++.+.++....|.....
T Consensus 46 ~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 46 GDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred HHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555566777888777887777777777777777776655443
No 108
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=21.04 E-value=2.4e+02 Score=22.33 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=34.5
Q ss_pred CChhHhhhhhhhhcchhhhhhhhcCChhhhhhh-cCchhHHHHHHHHHHHHHHHHHhh
Q 042496 2 ERPEERLKLEERLIPSSSLADEIGDGSGMQESD-SSATPAVVLGALVAVRGVAFVTFL 58 (80)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~vF~ifa~i~~v~~v~~~~~ 58 (80)
-+||.|.|.+.-+++..--.---|.-++...+- +--+..|++++..+.++..+.+.+
T Consensus 304 a~~e~rk~v~~~l~~aalts~ltGITEPiEF~FlFvaP~Ly~vha~l~G~~~~~~~~~ 361 (517)
T TIGR02004 304 ARPANRHKIKALLLSGVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALL 361 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999988887654433334444433211 111456777777777777766544
No 109
>PRK09952 shikimate transporter; Provisional
Probab=20.81 E-value=1.5e+02 Score=21.82 Aligned_cols=29 Identities=3% Similarity=-0.015 Sum_probs=18.3
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496 34 DSSATPAVVLGALVAVRGVAFVTFLVPATK 63 (80)
Q Consensus 34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETk 63 (80)
.+||+.+|++.++..++ .++.....||++
T Consensus 195 ~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 195 SWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred ccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 57888888877665444 334445667764
No 110
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=20.40 E-value=2.3e+02 Score=22.57 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=33.7
Q ss_pred CChhHhhhhhhhhcchhhhhhhhcCChhhhhhhc-CchhHHHHHHHHHHHHHHHHHhh
Q 042496 2 ERPEERLKLEERLIPSSSLADEIGDGSGMQESDS-SATPAVVLGALVAVRGVAFVTFL 58 (80)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~vF~ifa~i~~v~~v~~~~~ 58 (80)
-+||.|.|.+.-+++..--.---|.-++...+-+ --+..|++.+..+.++..+...+
T Consensus 298 A~~enrk~v~~ll~saaltsfltGITEPiEFtFlFvAP~Ly~vHa~L~Gl~~~i~~~l 355 (524)
T TIGR02005 298 APPENRKKVAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAF 355 (524)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999988887544433344444332111 11356777777777666665543
No 111
>PF15628 RRM_DME: RRM in Demeter
Probab=20.36 E-value=76 Score=20.04 Aligned_cols=17 Identities=35% Similarity=0.227 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHhhcc
Q 042496 62 TKGRTLEEIQASITKLS 78 (80)
Q Consensus 62 Tkg~sLeeI~~~~~~~~ 78 (80)
+||.+.+||++.|.+++
T Consensus 63 frGls~~eIq~cF~~G~ 79 (103)
T PF15628_consen 63 FRGLSREEIQQCFWKGF 79 (103)
T ss_pred hcccCHHHHHHHHhcCc
Confidence 58999999999987653
No 112
>PHA02085 hypothetical protein
Probab=20.26 E-value=83 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.0
Q ss_pred ChhHhhhhhhhhcchhhhhhhhcCCh
Q 042496 3 RPEERLKLEERLIPSSSLADEIGDGS 28 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (80)
.||.|.+.+++--+-+|++.+.|+.-
T Consensus 7 S~e~R~~Fa~~~~~N~~IAe~mGmdw 32 (87)
T PHA02085 7 SEEHKAMFARRHDCNQWIADKMGTDW 32 (87)
T ss_pred CHhHHHHHHhhchhhHHHHHHhcCCc
Confidence 57889999999999999999988543
No 113
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=20.07 E-value=1.8e+02 Score=18.92 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhcc-CCCCCCHHHHH
Q 042496 47 VAVRGVAFVTFLVP-ATKGRTLEEIQ 71 (80)
Q Consensus 47 i~~v~~v~~~~~lP-ETkg~sLeeI~ 71 (80)
..+++.+..+.+.| |++++++++-+
T Consensus 107 ~~~~~~~~i~~~aPv~~~~kpl~~~e 132 (185)
T PF04647_consen 107 LFIISFIIIIIYAPVDTPNKPLDSEE 132 (185)
T ss_pred HHHHHHHHHHHhcccccccCcCChHH
Confidence 44455556677788 68888774433
Done!