BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042503
         (477 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 36.2 bits (82), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377
           G ++++QMI   V PN+ATF             E A ++   M     I P L  YG  +
Sbjct: 89  GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPAL 147

Query: 378 DVLGRSGCVREAYDL 392
               R G   +AY++
Sbjct: 148 FGFCRKGDADKAYEV 162


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 32.7 bits (73), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 374 GCMVDVLGRSGCVREAYDLIRSMSIRPNAAI-WGSLLSSCRTHGHVELAEHAVKELINLE 432
           G ++  LGR    +  Y  ++++  +PN A+ W +L       G + LA H  ++ + L+
Sbjct: 142 GNLLKALGRLEEAKACY--LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 433 PWNSGNYVLLSNIYAEGGRWDDA 455
           P     Y+ L N+  E   +D A
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRA 222



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 393 IRSMSIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451
           +R++S+ PN A + G+L       G ++LA    +  I L+P     Y  L+N   E G 
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 452 WDDAE 456
             +AE
Sbjct: 287 VAEAE 291


>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
           Docking Peptide
          Length = 362

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 281 CGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340
           CGI   ARN    +P KN V WN +     F       ++L ++M+    +P+K   + V
Sbjct: 256 CGINLKARNYLLSLPHKNKVPWNRL-----FPNADSKALDLLDKMLT--FNPHKR--IEV 306

Query: 341 LTCCAHAGLVE 351
               AH  L +
Sbjct: 307 EQALAHPYLAQ 317


>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
           Aminopeptidase-Zinc Complex (Lap1)
          Length = 491

 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 291 FKEIPRKNVV---SWNAMISGLAFNGRGELGVEL 321
           FKE+ +K V    SWN+MIS +  +GR  L  EL
Sbjct: 38  FKEVAQKFVTDGDSWNSMISRIPASGRHPLHYEL 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,354,386
Number of Sequences: 62578
Number of extensions: 597319
Number of successful extensions: 1304
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 15
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)