Query 042503
Match_columns 477
No_of_seqs 621 out of 2263
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 06:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.4E-73 9.5E-78 567.7 50.1 472 3-477 191-732 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.5E-72 3.3E-77 550.9 46.6 471 2-477 90-569 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 7.8E-66 1.7E-70 515.5 50.2 465 2-471 89-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 7.7E-65 1.7E-69 499.0 45.5 467 2-472 373-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.7E-64 5.8E-69 495.2 48.8 436 30-471 366-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.3E-61 9.2E-66 470.4 39.2 462 2-472 126-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-33 5.6E-38 287.7 46.6 447 7-463 439-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-32 4.9E-37 280.8 46.6 454 3-467 367-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-24 3E-29 223.7 47.7 350 6-361 35-522 (1157)
10 KOG4626 O-linked N-acetylgluco 100.0 7.4E-26 1.6E-30 199.3 29.4 380 65-454 116-508 (966)
11 PRK11447 cellulose synthase su 100.0 6.8E-24 1.5E-28 218.6 47.1 411 40-464 275-739 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.9E-24 4.1E-29 190.6 26.4 420 38-466 52-486 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 7.1E-23 1.5E-27 198.5 37.7 419 38-465 131-571 (615)
14 PRK09782 bacteriophage N4 rece 99.9 5E-21 1.1E-25 189.0 44.9 226 233-466 478-707 (987)
15 PRK11788 tetratricopeptide rep 99.9 8.3E-23 1.8E-27 188.5 28.1 291 178-473 47-355 (389)
16 PRK09782 bacteriophage N4 rece 99.9 2E-20 4.4E-25 184.8 43.6 444 11-466 56-673 (987)
17 PRK15174 Vi polysaccharide exp 99.9 1.2E-20 2.7E-25 182.2 40.0 356 45-435 16-385 (656)
18 PRK10049 pgaA outer membrane p 99.9 4.6E-20 9.9E-25 182.1 40.9 400 31-465 12-456 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-20 1E-24 178.9 37.6 419 4-435 132-575 (615)
20 PRK15174 Vi polysaccharide exp 99.9 4.6E-20 9.9E-25 178.3 33.8 328 103-466 45-382 (656)
21 PRK11788 tetratricopeptide rep 99.9 8.7E-21 1.9E-25 175.0 26.4 282 72-396 42-344 (389)
22 PRK10049 pgaA outer membrane p 99.9 1.4E-18 3.1E-23 171.6 41.0 407 3-438 19-463 (765)
23 KOG2002 TPR-containing nuclear 99.9 1.9E-19 4E-24 167.3 32.2 444 14-466 251-746 (1018)
24 PRK14574 hmsH outer membrane p 99.9 6.8E-18 1.5E-22 163.7 41.2 416 44-465 44-513 (822)
25 KOG2002 TPR-containing nuclear 99.9 5.4E-18 1.2E-22 157.8 32.6 456 2-466 165-676 (1018)
26 KOG2003 TPR repeat-containing 99.8 7.2E-19 1.6E-23 150.2 22.7 442 2-451 204-709 (840)
27 PRK14574 hmsH outer membrane p 99.8 7.8E-17 1.7E-21 156.4 39.0 387 73-465 42-479 (822)
28 KOG0495 HAT repeat protein [RN 99.8 3.4E-15 7.3E-20 133.6 39.5 451 9-475 386-888 (913)
29 KOG4422 Uncharacterized conser 99.8 1.1E-14 2.4E-19 124.0 35.0 393 9-432 125-591 (625)
30 KOG0547 Translocase of outer m 99.8 1.6E-15 3.5E-20 131.1 27.9 385 68-463 118-564 (606)
31 PF13429 TPR_15: Tetratricopep 99.8 2.6E-18 5.7E-23 150.0 10.9 258 202-464 13-276 (280)
32 KOG0495 HAT repeat protein [RN 99.8 4.8E-14 1E-18 126.3 37.2 411 49-469 391-850 (913)
33 KOG2076 RNA polymerase III tra 99.8 4.3E-15 9.3E-20 137.8 30.0 358 107-475 146-522 (895)
34 KOG1915 Cell cycle control pro 99.8 8.8E-14 1.9E-18 120.1 35.8 411 45-466 84-537 (677)
35 KOG2003 TPR repeat-containing 99.7 8.4E-15 1.8E-19 125.7 28.2 422 35-465 202-689 (840)
36 KOG2076 RNA polymerase III tra 99.7 7.8E-14 1.7E-18 129.6 34.8 418 45-466 150-656 (895)
37 KOG1915 Cell cycle control pro 99.7 1.9E-13 4.1E-18 118.1 32.2 403 64-471 72-506 (677)
38 KOG1173 Anaphase-promoting com 99.7 1.3E-13 2.8E-18 121.8 30.8 453 2-465 19-518 (611)
39 PRK10747 putative protoheme IX 99.7 4.6E-14 1E-18 129.0 28.1 276 179-465 97-390 (398)
40 KOG4422 Uncharacterized conser 99.7 2.1E-13 4.5E-18 116.4 29.0 353 25-396 198-587 (625)
41 KOG1155 Anaphase-promoting com 99.7 1.7E-13 3.7E-18 118.0 28.0 356 31-395 161-532 (559)
42 KOG1155 Anaphase-promoting com 99.7 3.3E-13 7.2E-18 116.3 29.1 327 134-464 163-494 (559)
43 PF13429 TPR_15: Tetratricopep 99.7 3.7E-16 7.9E-21 136.6 11.1 251 107-361 15-275 (280)
44 PRK10747 putative protoheme IX 99.7 1.1E-13 2.5E-18 126.4 26.0 221 205-432 161-391 (398)
45 KOG0547 Translocase of outer m 99.7 6.2E-13 1.4E-17 115.4 28.4 223 206-433 335-568 (606)
46 KOG1126 DNA-binding cell divis 99.7 2.4E-14 5.3E-19 128.8 20.5 272 150-465 334-620 (638)
47 KOG1126 DNA-binding cell divis 99.6 3.3E-14 7.2E-19 128.0 21.0 164 296-465 418-586 (638)
48 TIGR00540 hemY_coli hemY prote 99.6 4.2E-13 9E-18 123.4 28.5 278 179-464 97-398 (409)
49 KOG2376 Signal recognition par 99.6 2.9E-11 6.4E-16 107.7 35.8 437 6-462 19-517 (652)
50 TIGR00540 hemY_coli hemY prote 99.6 6.3E-13 1.4E-17 122.2 26.6 287 112-431 96-399 (409)
51 TIGR02521 type_IV_pilW type IV 99.6 1.1E-12 2.3E-17 112.1 22.3 200 265-465 28-232 (234)
52 COG3071 HemY Uncharacterized e 99.6 1.7E-11 3.7E-16 104.2 28.2 278 179-465 97-390 (400)
53 COG2956 Predicted N-acetylgluc 99.6 8.5E-12 1.8E-16 102.9 24.3 257 139-430 73-346 (389)
54 COG2956 Predicted N-acetylgluc 99.5 4.4E-12 9.4E-17 104.5 22.3 265 203-472 75-354 (389)
55 COG3071 HemY Uncharacterized e 99.5 3.8E-11 8.3E-16 102.1 28.2 225 200-431 156-390 (400)
56 KOG1156 N-terminal acetyltrans 99.5 1E-10 2.2E-15 105.5 32.1 418 9-467 17-470 (700)
57 KOG2047 mRNA splicing factor [ 99.5 2.2E-10 4.8E-15 103.2 33.2 251 210-464 360-686 (835)
58 KOG4162 Predicted calmodulin-b 99.5 1.6E-10 3.4E-15 106.3 32.0 427 29-475 318-792 (799)
59 KOG3785 Uncharacterized conser 99.5 2.5E-10 5.5E-15 95.5 30.4 131 302-434 362-493 (557)
60 KOG1174 Anaphase-promoting com 99.5 4.9E-10 1.1E-14 95.8 32.1 275 164-445 230-514 (564)
61 PRK12370 invasion protein regu 99.5 9.9E-12 2.1E-16 118.8 22.9 261 196-466 255-536 (553)
62 KOG1129 TPR repeat-containing 99.5 5.7E-12 1.2E-16 104.0 16.4 228 201-434 227-461 (478)
63 KOG2047 mRNA splicing factor [ 99.5 1.1E-08 2.3E-13 92.6 38.2 434 7-453 146-711 (835)
64 KOG1173 Anaphase-promoting com 99.4 1.2E-10 2.7E-15 103.3 24.7 280 164-447 242-534 (611)
65 PRK12370 invasion protein regu 99.4 2.4E-11 5.2E-16 116.2 21.0 212 246-465 275-502 (553)
66 KOG1129 TPR repeat-containing 99.4 8.4E-12 1.8E-16 103.0 14.4 224 236-465 227-458 (478)
67 KOG4318 Bicoid mRNA stability 99.4 7.6E-11 1.6E-15 109.9 21.8 272 86-384 11-285 (1088)
68 KOG4318 Bicoid mRNA stability 99.4 1E-09 2.2E-14 102.6 28.9 424 20-469 11-598 (1088)
69 KOG1840 Kinesin light chain [C 99.4 3.8E-10 8.2E-15 103.1 25.7 230 233-463 200-477 (508)
70 COG3063 PilF Tfp pilus assembl 99.4 3.3E-11 7.1E-16 94.9 16.1 190 272-462 39-233 (250)
71 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.5E-15 99.5 21.4 199 198-432 32-233 (234)
72 KOG1840 Kinesin light chain [C 99.4 1.4E-09 3.1E-14 99.4 28.6 207 171-430 246-478 (508)
73 KOG4340 Uncharacterized conser 99.4 6.1E-10 1.3E-14 91.1 21.9 414 36-467 12-445 (459)
74 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.7E-13 87.4 30.5 284 175-466 205-501 (564)
75 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3E-13 94.2 32.7 426 7-461 12-516 (517)
76 PF13041 PPR_2: PPR repeat fam 99.3 2.5E-12 5.4E-17 78.7 4.6 50 63-112 1-50 (50)
77 PF13041 PPR_2: PPR repeat fam 99.3 6.6E-12 1.4E-16 76.8 6.4 50 195-244 1-50 (50)
78 PRK11189 lipoprotein NlpI; Pro 99.3 2.8E-10 6.1E-15 99.7 18.1 234 206-448 35-283 (296)
79 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-09 2.9E-14 95.4 22.0 92 269-361 65-159 (296)
80 KOG1156 N-terminal acetyltrans 99.3 1.5E-08 3.2E-13 91.9 28.5 381 77-467 19-436 (700)
81 PF12569 NARP1: NMDA receptor- 99.3 1.9E-09 4.1E-14 99.8 23.4 148 317-467 129-293 (517)
82 KOG3785 Uncharacterized conser 99.3 1.6E-08 3.6E-13 84.9 26.1 413 41-467 29-492 (557)
83 COG3063 PilF Tfp pilus assembl 99.3 1.5E-09 3.3E-14 85.7 18.7 162 302-466 38-203 (250)
84 PF04733 Coatomer_E: Coatomer 99.3 7.7E-11 1.7E-15 101.5 12.0 144 311-464 114-264 (290)
85 KOG0548 Molecular co-chaperone 99.2 4.5E-08 9.7E-13 87.0 27.9 413 8-448 11-472 (539)
86 KOG1127 TPR repeat-containing 99.2 7.8E-09 1.7E-13 98.1 24.1 219 244-465 862-1104(1238)
87 KOG4162 Predicted calmodulin-b 99.2 5.9E-08 1.3E-12 89.9 28.5 422 1-437 325-789 (799)
88 KOG2376 Signal recognition par 99.2 1.7E-07 3.7E-12 84.3 29.8 411 40-466 18-488 (652)
89 KOG3616 Selective LIM binding 99.2 4.3E-08 9.2E-13 90.3 26.1 169 239-427 739-907 (1636)
90 KOG1125 TPR repeat-containing 99.2 1.8E-09 3.8E-14 96.6 15.8 220 242-464 295-526 (579)
91 KOG0624 dsRNA-activated protei 99.1 3E-08 6.6E-13 83.0 21.6 297 139-442 42-381 (504)
92 KOG3617 WD40 and TPR repeat-co 99.1 4.1E-07 8.9E-12 85.1 30.7 196 11-224 740-994 (1416)
93 PF04733 Coatomer_E: Coatomer 99.1 6.6E-09 1.4E-13 89.6 17.6 160 270-436 104-270 (290)
94 cd05804 StaR_like StaR_like; a 99.1 2.4E-07 5.1E-12 84.6 28.6 259 204-466 50-337 (355)
95 KOG0985 Vesicle coat protein c 99.1 1E-06 2.2E-11 84.4 32.2 377 33-457 983-1375(1666)
96 KOG1127 TPR repeat-containing 99.1 1.2E-07 2.5E-12 90.4 26.0 427 28-463 485-994 (1238)
97 KOG1070 rRNA processing protei 99.1 2E-08 4.4E-13 98.6 19.3 211 255-471 1447-1669(1710)
98 PRK04841 transcriptional regul 99.0 8.6E-07 1.9E-11 91.6 32.5 323 110-433 384-762 (903)
99 KOG0985 Vesicle coat protein c 99.0 1.2E-06 2.6E-11 83.9 29.3 408 4-450 843-1327(1666)
100 KOG0548 Molecular co-chaperone 99.0 7.8E-08 1.7E-12 85.6 20.3 397 42-466 10-456 (539)
101 TIGR03302 OM_YfiO outer membra 99.0 3.9E-08 8.5E-13 83.7 18.0 183 265-465 30-232 (235)
102 KOG0624 dsRNA-activated protei 99.0 4.4E-07 9.6E-12 76.2 22.7 309 70-402 43-374 (504)
103 KOG3616 Selective LIM binding 99.0 2.7E-06 5.9E-11 78.9 29.8 194 173-396 739-934 (1636)
104 KOG3617 WD40 and TPR repeat-co 99.0 1.7E-06 3.6E-11 81.2 28.6 234 33-294 725-993 (1416)
105 PRK10370 formate-dependent nit 99.0 4.6E-08 1E-12 79.7 16.7 120 347-468 52-176 (198)
106 cd05804 StaR_like StaR_like; a 99.0 2E-06 4.3E-11 78.5 28.8 265 198-466 7-294 (355)
107 KOG1070 rRNA processing protei 98.9 1.8E-07 4E-12 92.1 21.0 226 134-360 1457-1697(1710)
108 KOG4340 Uncharacterized conser 98.9 7.5E-07 1.6E-11 73.5 20.6 189 135-331 10-210 (459)
109 KOG1914 mRNA cleavage and poly 98.9 1.4E-05 2.9E-10 71.8 29.7 130 31-163 17-165 (656)
110 KOG1125 TPR repeat-containing 98.9 1.1E-07 2.4E-12 85.4 17.0 250 204-458 292-564 (579)
111 PRK15359 type III secretion sy 98.9 6.5E-08 1.4E-12 74.6 13.6 105 339-445 29-135 (144)
112 PLN02789 farnesyltranstransfer 98.9 1.1E-06 2.4E-11 77.0 21.6 213 246-463 51-300 (320)
113 PRK04841 transcriptional regul 98.9 5.6E-06 1.2E-10 85.6 30.1 57 305-361 697-758 (903)
114 PRK15359 type III secretion sy 98.8 1.5E-07 3.2E-12 72.6 12.8 107 355-466 14-122 (144)
115 KOG1128 Uncharacterized conser 98.8 7.4E-07 1.6E-11 82.4 18.9 206 173-396 405-613 (777)
116 KOG3081 Vesicle coat complex C 98.8 3E-06 6.4E-11 68.9 20.1 147 307-463 116-269 (299)
117 PRK10370 formate-dependent nit 98.8 7.5E-07 1.6E-11 72.7 16.8 155 274-439 22-181 (198)
118 KOG1128 Uncharacterized conser 98.8 1E-06 2.2E-11 81.6 18.9 185 273-466 429-617 (777)
119 COG5010 TadD Flp pilus assembl 98.8 1.2E-06 2.6E-11 71.2 16.5 157 303-462 70-228 (257)
120 TIGR03302 OM_YfiO outer membra 98.7 8.5E-07 1.8E-11 75.5 16.7 182 230-433 31-234 (235)
121 COG5010 TadD Flp pilus assembl 98.7 1.9E-06 4.1E-11 70.1 17.3 160 265-428 64-228 (257)
122 PRK15179 Vi polysaccharide bio 98.7 1.2E-06 2.6E-11 84.8 17.9 132 331-464 83-216 (694)
123 PLN02789 farnesyltranstransfer 98.7 1.7E-06 3.6E-11 75.9 17.1 195 270-467 39-252 (320)
124 KOG3081 Vesicle coat complex C 98.7 2.2E-05 4.7E-10 64.1 21.6 158 272-436 112-276 (299)
125 TIGR02552 LcrH_SycD type III s 98.7 7.3E-07 1.6E-11 68.5 12.5 93 373-465 20-114 (135)
126 KOG1914 mRNA cleavage and poly 98.6 0.00033 7.2E-09 63.2 35.1 131 300-433 367-503 (656)
127 PRK15363 pathogenicity island 98.6 6.7E-07 1.5E-11 67.6 11.0 97 370-466 35-133 (157)
128 PRK14720 transcript cleavage f 98.6 6.5E-06 1.4E-10 80.7 20.6 227 195-462 29-280 (906)
129 PF12854 PPR_1: PPR repeat 98.6 7.3E-08 1.6E-12 52.7 4.3 32 365-396 2-33 (34)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.3E-06 2.9E-11 78.0 14.2 123 336-463 171-295 (395)
131 PF12854 PPR_1: PPR repeat 98.6 7E-08 1.5E-12 52.8 3.9 34 328-361 1-34 (34)
132 TIGR02552 LcrH_SycD type III s 98.6 2.5E-06 5.5E-11 65.5 13.6 115 321-438 5-121 (135)
133 KOG2053 Mitochondrial inherita 98.6 0.00083 1.8E-08 64.5 33.4 407 45-469 20-506 (932)
134 COG4783 Putative Zn-dependent 98.6 1.1E-05 2.3E-10 71.7 18.3 116 344-461 316-433 (484)
135 COG4783 Putative Zn-dependent 98.5 2.1E-05 4.5E-10 69.9 19.3 140 306-466 313-455 (484)
136 KOG3060 Uncharacterized conser 98.5 1.6E-05 3.5E-10 64.3 17.0 170 269-441 53-230 (289)
137 PRK14720 transcript cleavage f 98.5 1.7E-05 3.7E-10 77.8 18.8 206 231-468 30-255 (906)
138 COG4235 Cytochrome c biogenesi 98.5 3.9E-06 8.5E-11 70.2 12.5 111 367-477 153-268 (287)
139 PRK15179 Vi polysaccharide bio 98.4 4.1E-05 9E-10 74.4 20.5 138 298-438 85-224 (694)
140 TIGR02795 tol_pal_ybgF tol-pal 98.4 6.4E-06 1.4E-10 61.6 11.4 93 373-465 5-105 (119)
141 PF09976 TPR_21: Tetratricopep 98.4 1.5E-05 3.2E-10 61.8 13.5 114 347-461 24-143 (145)
142 KOG3060 Uncharacterized conser 98.4 6.9E-05 1.5E-09 60.8 17.2 163 302-467 55-222 (289)
143 cd00189 TPR Tetratricopeptide 98.4 5.9E-06 1.3E-10 58.9 10.5 94 373-466 3-98 (100)
144 PF12895 Apc3: Anaphase-promot 98.4 5.8E-07 1.3E-11 62.2 4.6 78 383-461 2-83 (84)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.5E-05 3.2E-10 71.5 14.4 128 268-398 169-296 (395)
146 PF09976 TPR_21: Tetratricopep 98.3 4.2E-05 9.1E-10 59.3 14.8 124 302-428 15-144 (145)
147 PF13414 TPR_11: TPR repeat; P 98.3 1.8E-06 3.9E-11 57.2 5.7 65 401-465 2-67 (69)
148 COG3898 Uncharacterized membra 98.3 0.0017 3.6E-08 56.5 24.5 276 179-473 97-398 (531)
149 KOG0550 Molecular chaperone (D 98.3 1.9E-05 4E-10 68.5 12.5 165 307-475 177-360 (486)
150 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.6E-05 5.7E-10 58.2 12.0 105 336-440 4-114 (119)
151 PF13432 TPR_16: Tetratricopep 98.2 3.4E-06 7.3E-11 55.0 5.8 58 408-465 3-60 (65)
152 PRK02603 photosystem I assembl 98.2 2.4E-05 5.1E-10 62.7 11.7 96 370-465 35-149 (172)
153 TIGR00756 PPR pentatricopeptid 98.2 1.7E-06 3.7E-11 48.2 3.7 34 67-100 2-35 (35)
154 PLN03088 SGT1, suppressor of 98.2 8E-06 1.7E-10 73.5 9.7 109 339-449 7-117 (356)
155 PF13812 PPR_3: Pentatricopept 98.2 1.8E-06 3.9E-11 47.7 3.6 33 66-98 2-34 (34)
156 KOG0553 TPR repeat-containing 98.2 1.6E-05 3.5E-10 66.1 10.5 106 344-451 91-198 (304)
157 PF13812 PPR_3: Pentatricopept 98.2 4.3E-06 9.4E-11 46.1 4.3 33 198-230 2-34 (34)
158 CHL00033 ycf3 photosystem I as 98.2 3.7E-05 8.1E-10 61.4 11.2 113 350-462 15-139 (168)
159 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 46.2 4.4 34 198-231 1-34 (35)
160 COG4700 Uncharacterized protei 98.1 0.00083 1.8E-08 52.0 16.8 132 331-464 86-221 (251)
161 PRK10153 DNA-binding transcrip 98.1 0.00023 5E-09 67.1 17.0 140 297-437 335-488 (517)
162 PLN03088 SGT1, suppressor of 98.1 0.0001 2.2E-09 66.5 13.6 102 305-409 8-110 (356)
163 KOG0550 Molecular chaperone (D 98.0 0.00064 1.4E-08 59.4 16.8 331 110-464 59-422 (486)
164 cd00189 TPR Tetratricopeptide 98.0 9.5E-05 2.1E-09 52.4 10.5 94 338-433 4-99 (100)
165 PF12895 Apc3: Anaphase-promot 98.0 1.7E-05 3.8E-10 54.7 6.1 80 313-395 3-83 (84)
166 PF13432 TPR_16: Tetratricopep 98.0 2.3E-05 5.1E-10 51.0 6.4 61 376-436 3-65 (65)
167 PRK10866 outer membrane biogen 98.0 0.0014 3.1E-08 55.4 18.7 58 407-464 180-240 (243)
168 PRK10153 DNA-binding transcrip 98.0 0.00025 5.3E-09 66.9 15.4 144 328-476 331-492 (517)
169 PF13371 TPR_9: Tetratricopept 98.0 2.4E-05 5.2E-10 52.4 6.5 59 409-467 2-60 (73)
170 PF14559 TPR_19: Tetratricopep 98.0 8.5E-06 1.8E-10 53.7 4.1 54 413-466 2-55 (68)
171 PF05843 Suf: Suppressor of fo 98.0 0.00028 6E-09 61.4 14.3 132 301-435 3-140 (280)
172 PRK02603 photosystem I assembl 98.0 0.00032 6.9E-09 56.2 13.6 129 300-451 36-166 (172)
173 PF07079 DUF1347: Protein of u 98.0 0.011 2.4E-07 52.6 32.9 440 9-463 16-522 (549)
174 KOG2041 WD40 repeat protein [G 98.0 0.017 3.7E-07 54.4 26.0 248 49-327 678-951 (1189)
175 PRK15331 chaperone protein Sic 97.9 0.00017 3.6E-09 55.1 10.4 88 377-464 44-133 (165)
176 KOG2053 Mitochondrial inherita 97.9 0.023 5E-07 55.1 37.6 212 10-227 20-256 (932)
177 KOG0553 TPR repeat-containing 97.9 5.5E-05 1.2E-09 63.1 7.8 89 378-466 89-179 (304)
178 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.7E-09 61.1 12.6 129 335-465 2-136 (280)
179 PF04840 Vps16_C: Vps16, C-ter 97.9 0.015 3.2E-07 51.3 22.8 107 336-459 179-285 (319)
180 PF04840 Vps16_C: Vps16, C-ter 97.8 0.018 4E-07 50.7 26.3 107 273-396 182-288 (319)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.021 4.4E-07 51.0 31.4 128 335-464 398-530 (660)
182 CHL00033 ycf3 photosystem I as 97.8 0.00062 1.4E-08 54.3 12.7 101 334-434 35-152 (168)
183 PF14559 TPR_19: Tetratricopep 97.8 3.5E-05 7.6E-10 50.7 4.6 53 383-435 4-58 (68)
184 PRK10803 tol-pal system protei 97.8 0.00022 4.7E-09 60.8 10.3 90 345-434 154-249 (263)
185 PF13414 TPR_11: TPR repeat; P 97.8 8.2E-05 1.8E-09 49.1 6.3 65 369-433 2-69 (69)
186 PF14938 SNAP: Soluble NSF att 97.8 0.0019 4.2E-08 56.4 16.4 60 302-361 158-223 (282)
187 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 42.0 2.7 29 67-95 2-30 (31)
188 KOG2280 Vacuolar assembly/sort 97.8 0.038 8.3E-07 52.6 29.8 352 73-458 397-792 (829)
189 PF10037 MRP-S27: Mitochondria 97.8 0.00023 5.1E-09 64.3 10.3 118 31-148 63-186 (429)
190 PF12688 TPR_5: Tetratrico pep 97.8 0.00087 1.9E-08 49.2 11.4 86 377-462 8-101 (120)
191 PRK15363 pathogenicity island 97.8 0.00053 1.1E-08 52.2 10.4 90 201-293 39-128 (157)
192 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 40.8 3.5 31 198-228 1-31 (31)
193 PRK10866 outer membrane biogen 97.7 0.0079 1.7E-07 51.0 18.4 77 64-142 31-111 (243)
194 COG4700 Uncharacterized protei 97.7 0.0043 9.3E-08 48.2 14.8 134 297-430 87-221 (251)
195 PF14938 SNAP: Soluble NSF att 97.7 0.0038 8.3E-08 54.5 16.8 204 70-300 40-269 (282)
196 PF03704 BTAD: Bacterial trans 97.7 0.00042 9.1E-09 53.8 9.7 70 403-472 63-137 (146)
197 PF08579 RPM2: Mitochondrial r 97.7 0.00029 6.3E-09 49.6 7.3 79 69-147 29-116 (120)
198 PF13431 TPR_17: Tetratricopep 97.6 3.5E-05 7.6E-10 42.0 2.0 33 424-456 1-33 (34)
199 PF12688 TPR_5: Tetratrico pep 97.6 0.0012 2.6E-08 48.5 10.2 92 203-296 7-103 (120)
200 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.5E-09 43.0 4.0 42 403-444 2-43 (44)
201 KOG1130 Predicted G-alpha GTPa 97.6 0.00055 1.2E-08 59.8 9.1 129 336-464 197-343 (639)
202 KOG2041 WD40 repeat protein [G 97.6 0.028 6.2E-07 53.0 20.4 61 132-197 849-909 (1189)
203 PF10037 MRP-S27: Mitochondria 97.5 0.0035 7.5E-08 56.9 14.3 121 329-449 61-186 (429)
204 KOG2796 Uncharacterized conser 97.5 0.0019 4.2E-08 52.9 11.3 136 300-435 178-319 (366)
205 PRK10803 tol-pal system protei 97.5 0.0026 5.5E-08 54.3 12.6 95 372-466 145-247 (263)
206 KOG1538 Uncharacterized conser 97.5 0.011 2.4E-07 55.0 17.1 253 136-429 557-844 (1081)
207 COG4235 Cytochrome c biogenesi 97.5 0.0095 2E-07 50.4 15.4 112 322-436 145-261 (287)
208 KOG1130 Predicted G-alpha GTPa 97.5 0.0014 3E-08 57.3 10.5 130 301-430 197-343 (639)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00062 1.3E-08 61.1 8.7 101 367-470 72-179 (453)
210 PF13525 YfiO: Outer membrane 97.5 0.0071 1.5E-07 49.9 14.2 49 408-456 147-198 (203)
211 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.7E-08 45.4 9.1 79 303-382 29-116 (120)
212 PF13371 TPR_9: Tetratricopept 97.4 0.00083 1.8E-08 44.8 6.8 63 378-440 3-67 (73)
213 KOG1258 mRNA processing protei 97.4 0.12 2.5E-06 48.3 28.1 183 265-450 294-489 (577)
214 PF06239 ECSIT: Evolutionarily 97.4 0.0014 3.1E-08 52.4 8.8 88 296-384 44-152 (228)
215 PF13424 TPR_12: Tetratricopep 97.3 0.00037 8E-09 47.3 4.5 62 403-464 6-74 (78)
216 KOG0543 FKBP-type peptidyl-pro 97.3 0.0048 1E-07 54.3 11.9 96 370-465 257-355 (397)
217 KOG2796 Uncharacterized conser 97.3 0.028 6.1E-07 46.4 15.1 127 338-465 181-315 (366)
218 KOG1538 Uncharacterized conser 97.3 0.042 9.1E-07 51.4 17.8 115 182-328 732-846 (1081)
219 PF13424 TPR_12: Tetratricopep 97.3 0.00064 1.4E-08 46.1 5.0 61 371-431 6-75 (78)
220 KOG2114 Vacuolar assembly/sort 97.3 0.2 4.4E-06 48.7 22.4 177 36-223 336-516 (933)
221 PRK11619 lytic murein transgly 97.2 0.26 5.7E-06 48.3 27.9 52 377-428 319-372 (644)
222 PF13281 DUF4071: Domain of un 97.2 0.055 1.2E-06 48.3 17.1 162 272-436 145-339 (374)
223 PF06239 ECSIT: Evolutionarily 97.1 0.0022 4.7E-08 51.4 7.2 97 54-150 34-153 (228)
224 PF13525 YfiO: Outer membrane 97.1 0.03 6.5E-07 46.2 14.4 49 417-465 105-170 (203)
225 PF13512 TPR_18: Tetratricopep 97.1 0.022 4.8E-07 42.7 12.1 89 377-465 17-128 (142)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0057 1.2E-07 55.1 10.0 63 331-396 72-138 (453)
227 COG1729 Uncharacterized protei 97.0 0.0068 1.5E-07 50.6 9.6 98 336-436 144-249 (262)
228 COG3898 Uncharacterized membra 97.0 0.24 5.3E-06 43.7 27.7 284 103-396 85-389 (531)
229 PF09205 DUF1955: Domain of un 96.9 0.041 8.9E-07 40.2 11.2 140 310-468 13-152 (161)
230 COG4105 ComL DNA uptake lipopr 96.9 0.2 4.3E-06 41.8 19.3 161 309-471 44-238 (254)
231 KOG0543 FKBP-type peptidyl-pro 96.9 0.0099 2.2E-07 52.4 9.5 65 402-466 257-321 (397)
232 KOG1258 mRNA processing protei 96.8 0.45 9.7E-06 44.6 23.3 137 63-202 43-187 (577)
233 KOG4555 TPR repeat-containing 96.7 0.025 5.5E-07 41.1 9.2 88 344-433 53-146 (175)
234 COG3118 Thioredoxin domain-con 96.7 0.22 4.8E-06 42.3 15.9 151 307-459 142-295 (304)
235 COG1729 Uncharacterized protei 96.7 0.02 4.3E-07 47.9 9.8 93 372-465 144-244 (262)
236 KOG2280 Vacuolar assembly/sort 96.6 0.77 1.7E-05 44.3 24.0 315 129-462 426-770 (829)
237 PF13281 DUF4071: Domain of un 96.5 0.23 5E-06 44.5 15.9 163 302-465 144-334 (374)
238 PRK11906 transcriptional regul 96.5 0.091 2E-06 47.8 13.4 158 300-460 252-431 (458)
239 PF03704 BTAD: Bacterial trans 96.5 0.023 5.1E-07 44.0 8.8 69 303-372 66-138 (146)
240 PRK11906 transcriptional regul 96.5 0.23 5E-06 45.3 15.7 140 283-427 273-432 (458)
241 PF12921 ATP13: Mitochondrial 96.5 0.032 7E-07 41.4 8.8 50 330-379 48-97 (126)
242 PF10300 DUF3808: Protein of u 96.4 0.2 4.3E-06 47.3 15.8 116 347-465 246-376 (468)
243 PF07719 TPR_2: Tetratricopept 96.4 0.011 2.5E-07 32.0 4.7 33 403-435 2-34 (34)
244 COG0457 NrfG FOG: TPR repeat [ 96.4 0.5 1.1E-05 39.8 24.6 222 211-434 37-268 (291)
245 PF13512 TPR_18: Tetratricopep 96.4 0.2 4.3E-06 37.8 12.3 20 418-437 115-134 (142)
246 PRK15331 chaperone protein Sic 96.4 0.076 1.6E-06 41.0 10.3 84 310-396 48-131 (165)
247 PF02259 FAT: FAT domain; Int 96.3 0.71 1.5E-05 42.1 18.8 149 298-449 145-305 (352)
248 KOG0890 Protein kinase of the 96.3 2.3 5.1E-05 47.0 24.4 317 140-468 1388-1734(2382)
249 KOG2610 Uncharacterized conser 96.3 0.2 4.3E-06 43.2 13.3 112 313-427 117-234 (491)
250 KOG1585 Protein required for f 96.2 0.42 9E-06 39.4 14.1 52 406-458 194-249 (308)
251 PF00515 TPR_1: Tetratricopept 96.2 0.012 2.5E-07 32.1 4.0 32 403-434 2-33 (34)
252 PF12921 ATP13: Mitochondrial 96.2 0.13 2.7E-06 38.4 10.4 79 334-412 2-98 (126)
253 PF08631 SPO22: Meiosis protei 96.2 0.8 1.7E-05 40.0 20.6 19 411-429 255-273 (278)
254 smart00299 CLH Clathrin heavy 96.1 0.44 9.5E-06 36.5 14.6 129 300-448 8-137 (140)
255 PF04184 ST7: ST7 protein; In 96.0 0.71 1.5E-05 42.5 16.1 16 420-435 364-379 (539)
256 COG3629 DnrI DNA-binding trans 96.0 0.046 1E-06 46.5 8.2 62 403-464 154-215 (280)
257 COG3118 Thioredoxin domain-con 95.9 0.92 2E-05 38.8 17.0 118 240-361 142-263 (304)
258 COG4785 NlpI Lipoprotein NlpI, 95.9 0.63 1.4E-05 37.7 13.4 28 437-464 238-265 (297)
259 PF04184 ST7: ST7 protein; In 95.9 0.22 4.7E-06 45.6 12.2 61 371-431 260-324 (539)
260 COG0457 NrfG FOG: TPR repeat [ 95.8 0.99 2.2E-05 38.0 24.5 196 268-465 59-265 (291)
261 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.5 3.2E-05 39.8 26.2 402 20-435 30-535 (660)
262 PF04053 Coatomer_WDAD: Coatom 95.8 0.39 8.4E-06 44.7 14.0 132 74-227 270-403 (443)
263 PF08631 SPO22: Meiosis protei 95.7 0.79 1.7E-05 40.0 15.2 101 372-472 86-193 (278)
264 KOG1941 Acetylcholine receptor 95.7 0.68 1.5E-05 40.6 13.9 128 303-430 126-274 (518)
265 KOG4234 TPR repeat-containing 95.7 0.054 1.2E-06 42.8 6.8 102 342-445 103-211 (271)
266 KOG2114 Vacuolar assembly/sort 95.7 2.5 5.4E-05 41.7 24.3 147 37-194 371-518 (933)
267 PF04053 Coatomer_WDAD: Coatom 95.6 0.68 1.5E-05 43.2 14.8 159 108-293 269-427 (443)
268 smart00299 CLH Clathrin heavy 95.6 0.59 1.3E-05 35.8 12.6 43 4-47 12-54 (140)
269 KOG1941 Acetylcholine receptor 95.5 0.14 3E-06 44.7 9.2 161 302-462 86-272 (518)
270 KOG3941 Intermediate in Toll s 95.4 0.15 3.2E-06 42.9 8.8 98 288-386 54-174 (406)
271 COG4649 Uncharacterized protei 95.4 0.57 1.2E-05 36.4 11.1 122 309-430 68-195 (221)
272 PF07035 Mic1: Colon cancer-as 95.3 1 2.3E-05 35.2 12.8 130 85-222 14-145 (167)
273 PF10300 DUF3808: Protein of u 95.3 0.58 1.3E-05 44.2 13.8 156 138-295 191-374 (468)
274 COG4105 ComL DNA uptake lipopr 95.3 1.5 3.3E-05 36.7 16.3 178 73-260 42-232 (254)
275 KOG2610 Uncharacterized conser 95.2 0.25 5.4E-06 42.6 9.8 115 345-461 114-234 (491)
276 KOG3941 Intermediate in Toll s 95.2 0.12 2.5E-06 43.5 7.5 110 53-162 53-186 (406)
277 KOG4555 TPR repeat-containing 95.1 0.22 4.8E-06 36.5 7.9 53 309-362 53-105 (175)
278 PF13428 TPR_14: Tetratricopep 95.0 0.049 1.1E-06 31.7 3.8 31 436-466 1-31 (44)
279 PF13176 TPR_7: Tetratricopept 95.0 0.052 1.1E-06 29.9 3.7 26 438-463 1-26 (36)
280 PF13176 TPR_7: Tetratricopept 94.9 0.054 1.2E-06 29.9 3.6 28 404-431 1-28 (36)
281 PF13181 TPR_8: Tetratricopept 94.9 0.065 1.4E-06 29.0 3.9 31 404-434 3-33 (34)
282 PF00637 Clathrin: Region in C 94.9 0.022 4.7E-07 44.0 2.6 129 4-150 12-140 (143)
283 PF07079 DUF1347: Protein of u 94.8 3.1 6.8E-05 37.9 30.2 96 13-111 59-178 (549)
284 COG1747 Uncharacterized N-term 94.7 3.6 7.7E-05 38.2 20.3 141 300-447 100-250 (711)
285 PF09205 DUF1955: Domain of un 94.7 1.3 2.8E-05 32.8 13.2 135 279-432 13-150 (161)
286 KOG1920 IkappaB kinase complex 94.5 6.7 0.00014 40.5 21.2 153 179-360 893-1052(1265)
287 KOG1585 Protein required for f 94.5 2.3 5.1E-05 35.3 16.7 203 199-425 33-250 (308)
288 KOG2396 HAT (Half-A-TPR) repea 94.5 3.9 8.5E-05 37.8 29.6 243 215-464 300-558 (568)
289 PF00637 Clathrin: Region in C 94.5 0.12 2.6E-06 39.8 6.0 87 105-194 12-98 (143)
290 COG4649 Uncharacterized protei 94.4 1.9 4.2E-05 33.6 12.6 23 374-396 171-193 (221)
291 KOG2066 Vacuolar assembly/sort 94.4 5.6 0.00012 39.0 22.6 30 270-299 507-536 (846)
292 KOG1464 COP9 signalosome, subu 94.3 2.8 6.1E-05 35.3 15.1 251 181-438 42-339 (440)
293 PF09613 HrpB1_HrpK: Bacterial 94.2 2 4.4E-05 33.2 13.0 87 345-433 21-108 (160)
294 TIGR02561 HrpB1_HrpK type III 94.2 0.45 9.7E-06 36.0 7.9 82 371-452 8-94 (153)
295 KOG4648 Uncharacterized conser 94.1 0.11 2.4E-06 44.8 5.2 97 340-438 103-201 (536)
296 PF13174 TPR_6: Tetratricopept 94.0 0.13 2.8E-06 27.4 3.9 28 407-434 5-32 (33)
297 PF04097 Nic96: Nup93/Nic96; 93.8 5.1 0.00011 39.6 16.6 43 70-113 116-158 (613)
298 PF13431 TPR_17: Tetratricopep 93.7 0.094 2E-06 28.4 2.8 32 255-288 2-33 (34)
299 PF09613 HrpB1_HrpK: Bacterial 93.7 0.59 1.3E-05 36.1 8.0 97 369-466 6-107 (160)
300 PRK09687 putative lyase; Provi 93.6 4.6 0.0001 35.2 26.0 26 407-433 240-265 (280)
301 PRK15180 Vi polysaccharide bio 93.5 6 0.00013 36.4 23.2 121 11-134 301-425 (831)
302 PF13170 DUF4003: Protein of u 93.4 4.2 9E-05 35.8 13.7 147 316-464 79-245 (297)
303 PF02259 FAT: FAT domain; Int 93.3 6.3 0.00014 35.8 16.1 67 399-465 143-213 (352)
304 PRK11619 lytic murein transgly 93.3 9.5 0.00021 37.9 37.3 185 271-470 315-510 (644)
305 COG2976 Uncharacterized protei 93.3 1.8 3.9E-05 34.6 10.0 54 379-432 135-189 (207)
306 COG2976 Uncharacterized protei 93.2 3.7 8E-05 32.9 13.8 90 376-466 95-189 (207)
307 PF07719 TPR_2: Tetratricopept 93.2 0.15 3.2E-06 27.5 3.1 29 437-465 2-30 (34)
308 PRK15180 Vi polysaccharide bio 93.1 1.6 3.4E-05 39.9 10.9 90 344-435 333-424 (831)
309 PRK09687 putative lyase; Provi 93.1 5.6 0.00012 34.7 24.1 60 32-91 35-98 (280)
310 COG4455 ImpE Protein of avirul 92.6 0.5 1.1E-05 38.3 6.3 60 376-435 7-68 (273)
311 PF10602 RPN7: 26S proteasome 92.5 2.9 6.3E-05 33.5 10.8 60 302-361 39-100 (177)
312 PF07721 TPR_4: Tetratricopept 92.4 0.18 4E-06 25.2 2.6 24 437-460 2-25 (26)
313 PF13170 DUF4003: Protein of u 92.3 1.4 2.9E-05 38.7 9.3 128 15-144 78-226 (297)
314 PF00515 TPR_1: Tetratricopept 92.2 0.24 5.1E-06 26.7 3.1 30 437-466 2-31 (34)
315 TIGR02561 HrpB1_HrpK type III 92.2 2.7 5.9E-05 32.0 9.4 52 10-62 21-72 (153)
316 TIGR02508 type_III_yscG type I 92.2 2.9 6.2E-05 29.2 8.7 60 174-236 47-106 (115)
317 PF10602 RPN7: 26S proteasome 92.2 1.6 3.5E-05 35.0 9.0 59 372-430 38-101 (177)
318 KOG1586 Protein required for f 92.0 6.2 0.00014 32.7 14.7 129 310-438 84-231 (288)
319 KOG0545 Aryl-hydrocarbon recep 92.0 1.2 2.6E-05 36.9 7.8 57 409-465 237-293 (329)
320 TIGR03504 FimV_Cterm FimV C-te 92.0 0.35 7.5E-06 28.0 3.6 27 440-466 3-29 (44)
321 KOG4642 Chaperone-dependent E3 91.9 0.86 1.9E-05 37.5 7.0 86 343-431 19-107 (284)
322 PRK10941 hypothetical protein; 91.9 1.2 2.6E-05 38.3 8.4 63 404-466 183-245 (269)
323 COG3629 DnrI DNA-binding trans 91.5 2.2 4.8E-05 36.7 9.5 58 302-360 156-213 (280)
324 COG2909 MalT ATP-dependent tra 91.5 17 0.00036 36.6 17.2 188 279-470 426-652 (894)
325 COG4785 NlpI Lipoprotein NlpI, 91.5 6.8 0.00015 32.0 16.0 180 244-434 77-269 (297)
326 KOG4234 TPR repeat-containing 91.4 2.9 6.4E-05 33.5 9.2 54 411-464 143-196 (271)
327 PF06552 TOM20_plant: Plant sp 91.3 2.7 5.8E-05 33.2 8.8 73 387-466 52-137 (186)
328 PF09986 DUF2225: Uncharacteri 91.2 1.9 4.1E-05 35.7 8.7 66 404-469 120-198 (214)
329 PF13174 TPR_6: Tetratricopept 91.2 0.26 5.7E-06 26.2 2.6 28 438-465 2-29 (33)
330 PF06552 TOM20_plant: Plant sp 90.9 0.7 1.5E-05 36.3 5.4 33 418-450 51-83 (186)
331 PF13374 TPR_10: Tetratricopep 90.9 0.48 1E-05 26.9 3.7 28 437-464 3-30 (42)
332 KOG4648 Uncharacterized conser 90.8 1.2 2.5E-05 38.8 7.1 95 305-402 103-198 (536)
333 PF07035 Mic1: Colon cancer-as 90.8 6.9 0.00015 30.8 12.3 133 120-260 14-148 (167)
334 KOG1550 Extracellular protein 90.7 9.7 0.00021 37.2 14.3 49 417-467 379-428 (552)
335 KOG2066 Vacuolar assembly/sort 90.7 19 0.0004 35.7 22.3 24 201-224 509-532 (846)
336 KOG1920 IkappaB kinase complex 90.6 24 0.00052 36.9 22.8 142 138-296 911-1054(1265)
337 PF13181 TPR_8: Tetratricopept 90.4 0.6 1.3E-05 25.0 3.6 29 437-465 2-30 (34)
338 PF13374 TPR_10: Tetratricopep 90.2 0.81 1.7E-05 25.9 4.3 30 402-431 2-31 (42)
339 smart00028 TPR Tetratricopepti 90.2 0.83 1.8E-05 23.5 4.2 29 405-433 4-32 (34)
340 PF14853 Fis1_TPR_C: Fis1 C-te 89.7 1.1 2.3E-05 27.3 4.5 34 406-439 5-38 (53)
341 COG3947 Response regulator con 89.6 13 0.00027 32.1 15.7 60 404-463 281-340 (361)
342 PF02284 COX5A: Cytochrome c o 89.6 2.3 5.1E-05 29.8 6.4 60 317-378 28-87 (108)
343 KOG4570 Uncharacterized conser 89.4 1.3 2.8E-05 38.1 6.2 98 30-129 60-164 (418)
344 PF14561 TPR_20: Tetratricopep 89.3 1.4 3.1E-05 30.5 5.5 62 400-461 20-84 (90)
345 smart00386 HAT HAT (Half-A-TPR 89.1 0.86 1.9E-05 23.9 3.6 31 416-446 1-31 (33)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 2.6 5.7E-05 29.2 6.3 60 317-378 25-84 (103)
347 KOG4570 Uncharacterized conser 88.8 3.5 7.6E-05 35.6 8.3 96 298-396 63-161 (418)
348 PF11207 DUF2989: Protein of u 88.0 6.3 0.00014 31.9 8.8 71 385-456 121-198 (203)
349 KOG0276 Vesicle coat complex C 87.8 5.3 0.00012 37.9 9.4 100 280-397 649-748 (794)
350 PF04910 Tcf25: Transcriptiona 87.6 22 0.00048 32.4 14.9 57 408-464 109-167 (360)
351 TIGR02508 type_III_yscG type I 87.2 8.2 0.00018 27.0 8.4 88 13-104 19-106 (115)
352 COG1747 Uncharacterized N-term 87.2 27 0.00058 32.9 17.6 158 196-361 65-232 (711)
353 PF02284 COX5A: Cytochrome c o 87.1 6.4 0.00014 27.7 7.3 57 388-444 28-87 (108)
354 PF11207 DUF2989: Protein of u 87.0 7.6 0.00016 31.5 8.8 69 351-421 123-197 (203)
355 PF10345 Cohesin_load: Cohesin 86.9 35 0.00075 34.0 33.6 175 17-192 39-251 (608)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 5.9 0.00013 27.5 6.9 56 388-443 25-83 (103)
357 KOG0890 Protein kinase of the 86.9 63 0.0014 36.9 28.1 152 42-203 1391-1552(2382)
358 KOG2300 Uncharacterized conser 86.0 30 0.00064 32.3 28.2 150 311-462 335-511 (629)
359 COG2909 MalT ATP-dependent tra 85.9 42 0.00092 34.0 26.5 179 280-461 470-684 (894)
360 KOG0551 Hsp90 co-chaperone CNS 85.9 4.8 0.0001 35.2 7.6 91 373-463 84-180 (390)
361 KOG1308 Hsp70-interacting prot 85.3 0.74 1.6E-05 40.1 2.6 119 344-465 124-244 (377)
362 KOG3364 Membrane protein invol 85.0 4.8 0.0001 30.1 6.2 69 368-436 30-105 (149)
363 KOG1550 Extracellular protein 84.9 41 0.00089 33.0 21.1 272 182-466 228-539 (552)
364 PF13762 MNE1: Mitochondrial s 84.9 9.8 0.00021 29.1 8.1 78 36-113 41-128 (145)
365 PF10579 Rapsyn_N: Rapsyn N-te 84.8 2.1 4.5E-05 28.4 3.9 46 414-459 18-66 (80)
366 KOG0889 Histone acetyltransfer 84.5 61 0.0013 38.6 16.7 59 31-93 2451-2510(3550)
367 smart00028 TPR Tetratricopepti 83.6 2.2 4.7E-05 21.7 3.4 29 437-465 2-30 (34)
368 KOG2063 Vacuolar assembly/sort 83.6 57 0.0012 33.6 17.6 29 66-94 505-533 (877)
369 KOG0686 COP9 signalosome, subu 83.6 33 0.00072 31.2 11.8 59 136-194 151-215 (466)
370 TIGR02270 conserved hypothetic 83.5 39 0.00084 31.5 22.3 31 53-83 88-118 (410)
371 PF12862 Apc5: Anaphase-promot 83.0 5.1 0.00011 28.1 5.7 53 413-465 9-70 (94)
372 KOG4507 Uncharacterized conser 82.7 5.2 0.00011 37.9 7.0 100 347-447 620-721 (886)
373 TIGR03504 FimV_Cterm FimV C-te 82.4 2.6 5.7E-05 24.4 3.3 26 4-29 4-29 (44)
374 PF10345 Cohesin_load: Cohesin 82.0 57 0.0012 32.5 29.0 159 3-162 63-252 (608)
375 KOG2422 Uncharacterized conser 81.8 43 0.00094 32.1 12.3 52 411-462 351-404 (665)
376 COG4976 Predicted methyltransf 81.8 2.5 5.4E-05 34.7 4.1 51 414-464 7-57 (287)
377 COG5159 RPN6 26S proteasome re 81.2 19 0.00041 31.0 9.0 52 305-356 9-67 (421)
378 KOG3824 Huntingtin interacting 81.0 5.1 0.00011 34.5 5.8 46 414-459 128-173 (472)
379 COG0790 FOG: TPR repeat, SEL1 80.5 40 0.00086 29.7 18.4 148 314-468 92-269 (292)
380 KOG0276 Vesicle coat complex C 80.1 21 0.00045 34.3 9.8 134 35-193 615-748 (794)
381 PRK10941 hypothetical protein; 79.3 15 0.00033 31.7 8.4 66 374-439 185-252 (269)
382 KOG1464 COP9 signalosome, subu 78.8 41 0.00088 28.8 15.3 182 209-390 39-251 (440)
383 COG4455 ImpE Protein of avirul 78.7 14 0.00031 30.3 7.3 78 301-379 3-81 (273)
384 KOG4642 Chaperone-dependent E3 78.3 39 0.00083 28.4 9.7 118 277-396 19-143 (284)
385 PF14863 Alkyl_sulf_dimr: Alky 78.2 12 0.00025 28.6 6.5 66 386-454 57-122 (141)
386 PF08424 NRDE-2: NRDE-2, neces 78.1 51 0.0011 29.6 15.5 114 316-432 48-184 (321)
387 PF15469 Sec5: Exocyst complex 78.0 26 0.00057 28.2 9.1 113 337-477 60-180 (182)
388 KOG2471 TPR repeat-containing 78.0 60 0.0013 30.5 11.7 104 275-381 247-380 (696)
389 KOG2471 TPR repeat-containing 77.7 63 0.0014 30.4 15.7 106 344-449 250-382 (696)
390 KOG3364 Membrane protein invol 77.6 13 0.00029 27.8 6.3 64 331-396 29-97 (149)
391 PF12862 Apc5: Anaphase-promot 77.5 16 0.00034 25.6 6.7 26 407-432 46-71 (94)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 77.5 22 0.00049 26.5 7.9 42 420-461 81-124 (126)
393 COG5159 RPN6 26S proteasome re 77.4 47 0.001 28.7 12.2 51 203-253 9-66 (421)
394 PF11846 DUF3366: Domain of un 76.8 15 0.00032 30.0 7.5 37 397-433 139-175 (193)
395 KOG1586 Protein required for f 76.3 45 0.00098 27.9 14.6 84 274-369 99-188 (288)
396 PF04190 DUF410: Protein of un 74.8 55 0.0012 28.3 18.1 159 178-362 2-169 (260)
397 COG5191 Uncharacterized conser 74.7 8.6 0.00019 33.3 5.4 80 366-445 103-185 (435)
398 KOG0376 Serine-threonine phosp 74.7 2.9 6.2E-05 38.5 2.9 100 340-442 10-112 (476)
399 PF07163 Pex26: Pex26 protein; 74.5 41 0.00089 29.0 9.2 83 275-357 90-181 (309)
400 KOG3807 Predicted membrane pro 74.2 63 0.0014 28.6 12.5 19 420-438 380-398 (556)
401 PF14853 Fis1_TPR_C: Fis1 C-te 74.1 6.6 0.00014 23.9 3.5 28 438-465 3-30 (53)
402 PF09670 Cas_Cas02710: CRISPR- 73.1 76 0.0016 29.3 11.6 18 311-328 143-160 (379)
403 KOG4077 Cytochrome c oxidase, 72.9 15 0.00032 27.1 5.5 46 84-129 68-113 (149)
404 KOG4507 Uncharacterized conser 72.7 25 0.00053 33.7 8.2 134 331-466 568-706 (886)
405 PF09477 Type_III_YscG: Bacter 72.2 33 0.00072 24.5 7.8 83 10-95 17-99 (116)
406 PF04190 DUF410: Protein of un 71.7 66 0.0014 27.8 17.3 159 46-226 2-170 (260)
407 KOG4279 Serine/threonine prote 71.1 79 0.0017 31.6 11.3 169 272-443 205-407 (1226)
408 PF07163 Pex26: Pex26 protein; 70.8 41 0.0009 29.0 8.4 57 204-260 90-146 (309)
409 KOG0530 Protein farnesyltransf 70.6 68 0.0015 27.5 12.9 58 415-472 125-183 (318)
410 KOG4814 Uncharacterized conser 70.4 72 0.0016 31.2 10.7 85 381-465 365-457 (872)
411 PF10579 Rapsyn_N: Rapsyn N-te 69.9 12 0.00026 24.9 4.1 46 346-391 18-64 (80)
412 cd08819 CARD_MDA5_2 Caspase ac 69.7 25 0.00055 24.0 5.7 66 18-85 21-86 (88)
413 KOG1498 26S proteasome regulat 69.6 90 0.0019 28.5 12.3 93 374-470 135-246 (439)
414 KOG4077 Cytochrome c oxidase, 69.4 32 0.00069 25.5 6.5 47 318-364 68-114 (149)
415 PF10366 Vps39_1: Vacuolar sor 68.9 38 0.00082 24.5 7.0 28 66-93 40-67 (108)
416 PF12968 DUF3856: Domain of Un 68.7 44 0.00095 24.6 8.6 57 406-462 59-126 (144)
417 COG2912 Uncharacterized conser 67.6 30 0.00065 29.7 7.1 58 408-465 187-244 (269)
418 PF10366 Vps39_1: Vacuolar sor 67.5 35 0.00075 24.7 6.6 28 198-225 40-67 (108)
419 PF11846 DUF3366: Domain of un 67.3 25 0.00055 28.6 6.8 31 366-396 140-170 (193)
420 PRK13800 putative oxidoreducta 66.9 1.8E+02 0.0038 30.8 28.0 51 157-207 626-676 (897)
421 PF04097 Nic96: Nup93/Nic96; 66.2 1.5E+02 0.0032 29.7 18.8 22 380-401 515-536 (613)
422 PF09477 Type_III_YscG: Bacter 64.9 49 0.0011 23.7 9.7 76 115-193 21-96 (116)
423 cd00280 TRFH Telomeric Repeat 64.9 28 0.0006 27.8 5.9 40 72-114 118-157 (200)
424 PF07720 TPR_3: Tetratricopept 64.8 21 0.00047 19.6 4.7 18 407-424 6-23 (36)
425 PF11848 DUF3368: Domain of un 64.3 18 0.0004 21.4 3.9 39 5-43 8-46 (48)
426 PRK13342 recombination factor 64.2 1.3E+02 0.0028 28.3 12.1 48 199-246 229-279 (413)
427 PF10255 Paf67: RNA polymerase 64.1 54 0.0012 30.3 8.5 55 375-429 127-191 (404)
428 smart00777 Mad3_BUB1_I Mad3/BU 64.0 58 0.0013 24.3 7.9 71 387-460 50-123 (125)
429 PF14561 TPR_20: Tetratricopep 64.0 46 0.00099 23.1 7.8 28 369-396 21-48 (90)
430 PF14689 SPOB_a: Sensor_kinase 62.1 12 0.00026 23.7 3.1 13 446-458 33-45 (62)
431 PRK12798 chemotaxis protein; R 61.8 1.4E+02 0.0029 27.8 19.7 181 281-464 125-323 (421)
432 KOG2063 Vacuolar assembly/sort 61.0 2.1E+02 0.0046 29.7 17.4 113 36-148 506-639 (877)
433 KOG2659 LisH motif-containing 60.6 1E+02 0.0022 25.8 9.7 97 330-429 22-130 (228)
434 COG5191 Uncharacterized conser 60.6 21 0.00046 31.1 5.0 68 398-465 103-171 (435)
435 PF11817 Foie-gras_1: Foie gra 60.4 51 0.0011 28.2 7.6 56 407-462 183-244 (247)
436 COG0735 Fur Fe2+/Zn2+ uptake r 60.4 54 0.0012 25.3 6.9 63 86-149 7-69 (145)
437 KOG4567 GTPase-activating prot 60.2 1.2E+02 0.0026 26.7 10.3 72 319-396 263-344 (370)
438 cd08819 CARD_MDA5_2 Caspase ac 60.1 53 0.0012 22.5 5.9 35 280-315 48-82 (88)
439 KOG0292 Vesicle coat complex C 60.0 98 0.0021 31.6 9.8 159 272-465 624-782 (1202)
440 COG4259 Uncharacterized protei 59.8 38 0.00082 23.8 5.1 26 410-435 80-105 (121)
441 PRK09857 putative transposase; 59.8 74 0.0016 28.1 8.5 65 405-469 209-273 (292)
442 cd00280 TRFH Telomeric Repeat 59.5 68 0.0015 25.7 7.2 30 378-407 119-148 (200)
443 PF02184 HAT: HAT (Half-A-TPR) 59.3 26 0.00056 18.7 3.5 27 417-444 2-28 (32)
444 COG4976 Predicted methyltransf 59.1 24 0.00052 29.3 4.9 56 380-435 5-62 (287)
445 PF14689 SPOB_a: Sensor_kinase 59.1 17 0.00036 23.0 3.3 43 387-429 7-50 (62)
446 PF04910 Tcf25: Transcriptiona 59.0 1.5E+02 0.0032 27.3 17.8 56 306-361 110-166 (360)
447 PF13929 mRNA_stabil: mRNA sta 58.9 1.2E+02 0.0027 26.4 14.4 143 316-461 113-263 (292)
448 KOG1308 Hsp70-interacting prot 58.3 13 0.00027 32.9 3.4 83 310-396 125-208 (377)
449 PF04781 DUF627: Protein of un 58.0 70 0.0015 23.2 7.1 43 420-462 62-104 (111)
450 PRK13800 putative oxidoreducta 57.3 2.6E+02 0.0057 29.6 26.6 239 55-311 625-864 (897)
451 KOG4567 GTPase-activating prot 57.2 1.4E+02 0.003 26.4 9.6 88 120-208 263-360 (370)
452 COG3947 Response regulator con 56.7 1.4E+02 0.003 26.2 14.0 57 373-429 282-340 (361)
453 PF10255 Paf67: RNA polymerase 56.2 91 0.002 28.9 8.6 56 169-224 125-191 (404)
454 PRK10564 maltose regulon perip 56.0 27 0.00058 30.5 5.0 40 199-238 259-298 (303)
455 KOG2422 Uncharacterized conser 55.7 2E+02 0.0044 27.9 13.7 53 308-360 351-404 (665)
456 KOG0376 Serine-threonine phosp 55.4 29 0.00064 32.3 5.4 105 306-414 11-117 (476)
457 KOG0292 Vesicle coat complex C 55.1 19 0.00041 36.2 4.4 48 380-430 653-700 (1202)
458 PF06957 COPI_C: Coatomer (COP 55.0 98 0.0021 28.9 8.6 108 309-434 214-332 (422)
459 KOG1463 26S proteasome regulat 53.0 1.4E+02 0.0031 26.7 8.7 137 341-477 11-169 (411)
460 PHA02875 ankyrin repeat protei 51.2 2.1E+02 0.0046 26.7 16.2 208 6-232 6-230 (413)
461 KOG1524 WD40 repeat-containing 51.2 90 0.0019 29.7 7.6 56 370-428 573-628 (737)
462 PF09670 Cas_Cas02710: CRISPR- 51.1 2E+02 0.0043 26.7 10.1 56 108-164 139-198 (379)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 50.9 1E+02 0.0022 23.0 8.0 44 250-293 81-124 (126)
464 KOG4521 Nuclear pore complex, 50.7 3.5E+02 0.0076 29.1 13.8 118 336-458 985-1124(1480)
465 COG0790 FOG: TPR repeat, SEL1 49.9 1.8E+02 0.0039 25.5 16.4 115 314-433 128-268 (292)
466 PF11838 ERAP1_C: ERAP1-like C 49.0 2E+02 0.0043 25.7 20.8 111 350-460 146-261 (324)
467 PF11848 DUF3368: Domain of un 48.5 56 0.0012 19.3 5.1 33 310-342 13-45 (48)
468 PF09454 Vps23_core: Vps23 cor 48.4 44 0.00094 21.5 3.9 48 400-447 6-53 (65)
469 cd08326 CARD_CASP9 Caspase act 48.4 46 0.001 22.7 4.3 63 18-84 18-80 (84)
470 PRK10564 maltose regulon perip 48.1 39 0.00085 29.5 4.7 39 301-339 259-297 (303)
471 PF11663 Toxin_YhaV: Toxin wit 47.7 8.9 0.00019 28.6 0.8 31 445-475 104-134 (140)
472 PF11768 DUF3312: Protein of u 47.6 2.7E+02 0.0059 27.0 10.7 24 272-295 412-435 (545)
473 COG5187 RPN7 26S proteasome re 47.3 2E+02 0.0043 25.2 11.4 28 334-361 115-142 (412)
474 KOG2297 Predicted translation 47.1 2E+02 0.0043 25.4 8.6 203 2-219 135-343 (412)
475 KOG3824 Huntingtin interacting 47.1 30 0.00066 30.1 3.9 16 346-361 128-143 (472)
476 PF04090 RNA_pol_I_TF: RNA pol 47.1 1.5E+02 0.0032 24.3 7.6 59 404-462 43-102 (199)
477 COG0735 Fur Fe2+/Zn2+ uptake r 46.8 1.3E+02 0.0029 23.1 7.3 33 203-235 26-58 (145)
478 cd08326 CARD_CASP9 Caspase act 46.8 42 0.0009 22.9 3.9 33 180-212 44-76 (84)
479 PF00244 14-3-3: 14-3-3 protei 46.7 1.8E+02 0.0039 24.7 9.5 157 203-360 7-195 (236)
480 PF11663 Toxin_YhaV: Toxin wit 46.2 21 0.00046 26.7 2.5 33 76-110 106-138 (140)
481 PF07064 RIC1: RIC1; InterPro 45.2 2E+02 0.0044 24.8 12.6 61 202-262 184-250 (258)
482 cd07153 Fur_like Ferric uptake 44.4 63 0.0014 23.5 5.0 48 4-51 5-52 (116)
483 TIGR02270 conserved hypothetic 44.4 2.8E+02 0.006 26.1 23.4 44 134-177 99-142 (410)
484 KOG2300 Uncharacterized conser 44.2 2.9E+02 0.0063 26.3 30.9 148 279-432 334-515 (629)
485 KOG4279 Serine/threonine prote 43.6 96 0.0021 31.0 6.9 162 300-466 202-396 (1226)
486 PF09454 Vps23_core: Vps23 cor 43.1 55 0.0012 21.0 3.8 48 297-345 6-53 (65)
487 COG5108 RPO41 Mitochondrial DN 42.5 99 0.0021 30.4 6.8 71 39-112 33-115 (1117)
488 PF12796 Ank_2: Ankyrin repeat 42.4 1.1E+02 0.0023 20.7 6.7 18 42-59 31-48 (89)
489 KOG0545 Aryl-hydrocarbon recep 41.5 2.3E+02 0.0049 24.3 11.0 73 372-444 232-306 (329)
490 PF10516 SHNi-TPR: SHNi-TPR; 41.4 65 0.0014 18.0 3.6 28 437-464 2-29 (38)
491 COG2256 MGS1 ATPase related to 41.2 3E+02 0.0065 25.6 12.4 53 195-247 244-299 (436)
492 PF08424 NRDE-2: NRDE-2, neces 40.9 2.7E+02 0.0059 25.0 15.1 111 285-396 48-180 (321)
493 KOG0687 26S proteasome regulat 40.6 1.9E+02 0.0042 25.8 7.6 111 356-466 56-174 (393)
494 PF13934 ELYS: Nuclear pore co 40.3 2.3E+02 0.0049 23.9 12.4 21 340-360 114-134 (226)
495 PF11768 DUF3312: Protein of u 40.2 2.3E+02 0.005 27.4 8.7 56 375-430 413-472 (545)
496 COG5187 RPN7 26S proteasome re 40.0 1.1E+02 0.0023 26.8 5.9 131 331-463 78-219 (412)
497 smart00777 Mad3_BUB1_I Mad3/BU 39.4 1.6E+02 0.0035 22.0 8.7 45 249-293 80-124 (125)
498 PF08195 TRI9: TRI9 protein; 39.1 12 0.00025 20.2 0.2 13 465-477 9-21 (43)
499 PRK11639 zinc uptake transcrip 38.6 1.7E+02 0.0037 23.3 6.8 43 204-246 32-74 (169)
500 PF01475 FUR: Ferric uptake re 37.7 61 0.0013 23.8 4.0 49 4-52 12-60 (120)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-73 Score=567.70 Aligned_cols=472 Identities=35% Similarity=0.653 Sum_probs=427.2
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCc
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSE 82 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (477)
..++++|...+++..+.+++..+.+.|+.||+.+++.++.+|++.|+++.|.++|+.|+.||+.+||.+|.+|++.|+++
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH
Confidence 34444444444455555555555555555666677888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccC
Q 042503 83 EPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (477)
+|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchHHhHHHHHHHHhcCChHHHHHHHH----------------------------------------------------
Q 042503 163 HRDVIVRNLMIHGFCKKGDVDKGLYLFR---------------------------------------------------- 190 (477)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------------- 190 (477)
.||..+|+.++.+|++.|++++|.++|+
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8777777777777776555555555554
Q ss_pred ------------------hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 191 ------------------EMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 191 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
+|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 44445666677777777777777777777777765 58999999999999999999999999
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP 332 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 332 (477)
+++..+.+.|. .++..++++++.+|++.|++++|..+|+.+ .+|..+||++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 510 ~i~~~~~~~g~-~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 510 EIHAHVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHHhCC-CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999998 889999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSC 412 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 412 (477)
|..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++.+|.+.|++++|.+++++|+++||..+|++|+.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
..+|+.+.++...+++.+++|+++..|..+++.|...|+|++|.++.+.|.+.|++++||+||||
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-72 Score=550.88 Aligned_cols=471 Identities=28% Similarity=0.505 Sum_probs=457.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhh-cccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHH
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHK-LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYS 76 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 76 (477)
+..++..+...|++++|.++++.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+ ||+.+||.++.+|+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 4567889999999999999999999865 689999999999999999999999999998864 99999999999999
Q ss_pred hcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 77 LNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
+.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|+.+.+.+
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999964 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 042503 157 VFDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232 (477)
Q Consensus 157 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 232 (477)
++..+.+ +|..+++.++.+|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+.+|++|.+.|+.||.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9887754 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhc
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN 312 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (477)
.||+.++.+|++.|+++.|.+++..+.+.|. +++..+++.|+.+|++.|++++|.++|++|.++|..+||.||.+|++.
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 393 IRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 393 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
+++++..|+..+|+.++.+|..+|+++.|..+++++.+..|.+..+|..++.+|++.|++++|.+++++|.+.|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q 042503 473 QSLIE 477 (477)
Q Consensus 473 ~s~~~ 477 (477)
+||||
T Consensus 565 ~s~i~ 569 (697)
T PLN03081 565 CTWIE 569 (697)
T ss_pred eeEEE
Confidence 99986
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.8e-66 Score=515.51 Aligned_cols=465 Identities=27% Similarity=0.441 Sum_probs=402.0
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++++|...+.++.+.+++..+.+.+..+++.+++.++.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++
T Consensus 89 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~ 168 (857)
T PLN03077 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168 (857)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCH
Confidence 45677778877888888888888888887788888899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|+++|++|...|+.||..||+.++++|...+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchHHhHHHHHHHH----------------------------------------------------------------
Q 042503 162 SHRDVIVRNLMIHGFC---------------------------------------------------------------- 177 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~---------------------------------------------------------------- 177 (477)
..+|..+||+++.+|+
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 7766655555555554
Q ss_pred ------hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccch
Q 042503 178 ------KKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIG 251 (477)
Q Consensus 178 ------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (477)
+.|++++|.++|++|..||..+|+.++.+|++.|++++|+.+|++|.+.|+.||..||+.++.+|++.|+++.+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 46666777777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
.++++.+.+.|. .++..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|.+.|+.++|..+|++|.. +++
T Consensus 409 ~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 409 VKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999999986 589
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSS 411 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 411 (477)
||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.|+.+|.++|++++|.++|+++ .||..+|+.++.+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~ 563 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTG 563 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 999999999999999999999999988888 5777777777777777777777777777777666 6666777777777
Q ss_pred HHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCC
Q 042503 412 CRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYAEGGRWDDAETLRMWMR-ENNVKKSP 471 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 471 (477)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 777777777777777766544 2246666666777777777777777777776 45665543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-65 Score=499.03 Aligned_cols=467 Identities=17% Similarity=0.232 Sum_probs=323.2
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcc--------------------------------cchhHHHhHHHHHhhcCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLH--------------------------------QSNLILAHFVSVCGTLNE 49 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~ 49 (477)
|..+...|.+.|++++|.++++.|.+.|+. |+..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 344555556666666666666666665532 556666667777777777
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 50 IKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 50 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
++.|.++|+.|.+ ||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7777777766654 666677777777777777777777777777767677777777777777777777777777777
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccC------CCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----C
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMS------HRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----R 195 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 195 (477)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ |
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 7777777777777777777777777777777777663 26666777777777777777777777777654 4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALV 275 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 275 (477)
+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|. .++..+|+.++
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence 55677777777777777777777777777777777777777777777777777777777777777776 66677777777
Q ss_pred HHHHhcCChHHHHHHhccCC----CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 276 DFYCKCGILDTARNVFKEIP----RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 77777777777777777663 36777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHhc---CCCCCHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGR----S-------------------GCVREAYDLIRSM---SIRPNAAIW 405 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~ 405 (477)
.|.++++.|. +.|+.||..+|+.++..|.+ + +..+.|..+|++| |+.||..+|
T Consensus 772 ~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 7777777776 46777777777776654321 1 1234567777777 667777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINL-EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
+.++.++...+....+..+++.+... .+.+..+|+.++.++.+. .++|..++++|.+.|+.|+-.
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77776666666666666666655432 244567888888877322 358999999999999888753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-64 Score=495.23 Aligned_cols=436 Identities=17% Similarity=0.245 Sum_probs=342.5
Q ss_pred cccchhHHHhHHHHHhhcCChhHHHHHhccCCCC-----CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH
Q 042503 30 LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP-----SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA 104 (477)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (477)
..++...+..++..+++.|++++|.++|+.|.++ +...++.++..|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3456667777777788888888888888887763 334556667777888888888888877764 7888888
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----CchHHhHHHHHHHHhcC
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLMIHGFCKKG 180 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 180 (477)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888874 78888888888888888
Q ss_pred ChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHhhccCcccchHHH
Q 042503 181 DVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRD--QAFELDEATVVAVLPICARLGAVDIGQWI 254 (477)
Q Consensus 181 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (477)
++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888753 7778888888888888888888888888865 56788888888888888888888888888
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
|+.|.+.++ +++..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 602 f~~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888888887 77778888888888888888888888887764 6777888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAIWGS 407 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ 407 (477)
+||..+|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.|+.+|++.|++++|.++|++| ++.||..+|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8888888888888888888888888888887 4677888888888888888888888888888877 77788888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHH----hcC-------------------CchHHHHHHHHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYA----EGG-------------------RWDDAETLRMWMR 463 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~ 463 (477)
++.+|.+.|+++.|.++++++.+.+ .++..+|+.++.++. +++ ..++|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 8888888888888888888887765 334666777765432 111 2356888888888
Q ss_pred hCCCccCC
Q 042503 464 ENNVKKSP 471 (477)
Q Consensus 464 ~~~~~~~~ 471 (477)
+.|+.|+.
T Consensus 840 ~~Gi~Pd~ 847 (1060)
T PLN03218 840 SAGTLPTM 847 (1060)
T ss_pred HCCCCCCH
Confidence 88887764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-61 Score=470.36 Aligned_cols=462 Identities=17% Similarity=0.275 Sum_probs=425.2
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++.+|.+.++++.+.+++..+.+.|+.||+.+++.++.+|++.|+++.|.++|++|++||..+||.++.+|++.|++
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|.++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHhHHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 162 SHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR----ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
.++|..+||.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.
T Consensus 286 ~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 99999999999999999999999999999995 48999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNG 313 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~ 313 (477)
++.+|++.|+++.|.++|+.|. .++..+|+.++.+|++.|+.++|.++|++|.+ ||..+|+.++.+|.+.|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999885 46778999999999999999999999999864 89999999999999999
Q ss_pred CchHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 314 RGELGVELYEQMIA-KGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 314 ~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
..++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.++++++. +.|+..+|+.|+.+|...|+++.|..+
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999986 6999999999999999999999999999998764 589999999999999999999999999
Q ss_pred HHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCchHHHHHHH----------H-HhcCCchHHHH
Q 042503 393 IRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEP--WNSGNYVLLSNI----------Y-AEGGRWDDAET 457 (477)
Q Consensus 393 ~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~----------~-~~~g~~~~A~~ 457 (477)
++++ +..|+ ..+|..++..|.+.|++++|.+++++|.+.+- ....+|..+... . ....-++...+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 9998 66675 57999999999999999999999999987762 112222111100 0 00111455667
Q ss_pred HHHHHHhCCCccCCC
Q 042503 458 LRMWMRENNVKKSPG 472 (477)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (477)
+.++|.+.|..|+..
T Consensus 597 l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 597 LMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCCCCcc
Confidence 888889999887754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-33 Score=287.74 Aligned_cols=447 Identities=10% Similarity=0.050 Sum_probs=248.6
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCch
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 83 (477)
..+...|++++|..+++.+.... ++++.++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33444455555555555444432 33444555555555555555555555554432 223344445555555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC
Q 042503 84 PVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH 163 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (477)
|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+.++. +...+..++..+...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555432 234445555555555555555555555555544322 344445555555555666666655555543
Q ss_pred ---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 164 ---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 164 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
.+...|..+..++...|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3344555555666666666666666655543 233445555555566666666666666555432 233455555
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCc
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 315 (477)
+...+...|+++.|..+++.+.... +.+...+..+...+...|++++|...|+++.. |+..++..++.++.+.|++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 5555666666666666666665554 44555555556666666666666666665543 3334455555566666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
++|...++++.+.. +.+...+..+...|...|++++|...|+++.+. .+++...++.+...+...|+ .+|+.++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 66666666665543 445556666666666666666666666666532 24455556666666666666 556666666
Q ss_pred c-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 396 M-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 396 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+ ...| ++..+..++..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5 2222 334555566666666666666666666666666666666666666666666666666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-32 Score=280.77 Aligned_cols=454 Identities=10% Similarity=0.035 Sum_probs=306.2
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--------------------
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-------------------- 62 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 62 (477)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 344555556666666666666665543 22344455555555555555555555554432
Q ss_pred -----------------CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 63 -----------------PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 63 -----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
++..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++.
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233445555555555555555555555555432 22333444445555555555555555555
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhh
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVS 199 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 199 (477)
+.+.++. +..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|.++++.+.+ .+...
T Consensus 525 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 5554322 444555555566666666666666655533 2334455566666666666666666666653 34556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...++.+.+.. |.+...+..++..+.
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 6777777777777777777777766543 3345556666667777777777777777777665 666666777777777
Q ss_pred hcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
..|++++|..+++.+.+ ++...+..+...+...|++++|...++++...+ |+..++..+..++.+.|++++|.+.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777776654 244566677777788888888888888887764 4446677778888888888888888
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
++.+.+. .+.+...+..+...|...|++++|.+.|+++ ..+++...++.++..+...|+ .+|+..++++++..|.
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 8888742 3567788888889999999999999999988 334566788889999999999 8899999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
++..+..++.++...|++++|.++++++++.+.
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999998764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.4e-24 Score=223.69 Aligned_cols=350 Identities=12% Similarity=0.042 Sum_probs=164.2
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchH---------------
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLF--------------- 68 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~--------------- 68 (477)
++.+...++.+.|.+.++.++... +.++.++...+..+.+.|+.++|.+.++++.+ |+...+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 344445555555555555555554 23455555555555555666666555555543 222111
Q ss_pred --HHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc-HHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHH
Q 042503 69 --NSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT-FAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELY 145 (477)
Q Consensus 69 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (477)
..+...+.+.|++++|.+.|+.+.+.+ +|+... ...........|+.++|.+.++.+.+..+. +...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122234455555666665555555432 222211 111111112235555555555555554322 344445555555
Q ss_pred HhcCChhhHHHHhcccCC-Cc-----hH-----------------Hh---------------------------------
Q 042503 146 TSCGQMDDGMKVFDEMSH-RD-----VI-----------------VR--------------------------------- 169 (477)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~-~~-----~~-----------------~~--------------------------------- 169 (477)
...|++++|+..++++.. +. .. .+
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 555555555555554321 00 00 00
Q ss_pred -HHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH---------
Q 042503 170 -NLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL-DEATV--------- 235 (477)
Q Consensus 170 -~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~--------- 235 (477)
......+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 0011223345555555555555543 2 34455555555555555655555555555432111 10000
Q ss_pred ---HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ceeH-------
Q 042503 236 ---VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-VVSW------- 302 (477)
Q Consensus 236 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~------- 302 (477)
......+.+.|++++|...++++.+.. |.+...+..+...+...|++++|++.|+++.+ |+ ...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 011223344555555555555555554 44444444555555555555555555555442 11 1111
Q ss_pred -----------------------------------HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 303 -----------------------------------NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 303 -----------------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..+...+...|++++|+..+++..+.. +.+...+..+...+.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 112223344566666666666666553 33445555566666666
Q ss_pred ccHHHHHHHHHHhh
Q 042503 348 GLVEKARELFASMT 361 (477)
Q Consensus 348 ~~~~~a~~~~~~~~ 361 (477)
|++++|...++++.
T Consensus 509 G~~~~A~~~l~~al 522 (1157)
T PRK11447 509 GQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=7.4e-26 Score=199.35 Aligned_cols=380 Identities=14% Similarity=0.114 Sum_probs=324.2
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 65 VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
..+|..+...+-..|++++|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.++. .......+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHH
Confidence 4678889999999999999999999999853 335788999999999999999999999999885432 22334445566
Q ss_pred HHhcCChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCChhHHHH
Q 042503 145 YTSCGQMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGRDSEALR 218 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~ 218 (477)
+-..|+.++|...|.+..+ |. ...|+.|...+...|++..|++-|++...-|+ ..|-.|...|...+.+++|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 6678999999998887765 33 45789999999999999999999999987333 478899999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 042503 219 LFHEMRDQAFELD-EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR- 296 (477)
Q Consensus 219 ~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 296 (477)
.|.+.... .|+ ...+..+...|...|..+.|+..++++.+.. |.-+.+|+.|..++...|+..+|...+.+...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99887765 554 4567777888899999999999999999998 88999999999999999999999999998875
Q ss_pred --CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHH
Q 042503 297 --KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHY 373 (477)
Q Consensus 297 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 373 (477)
....+.+.|..++...|.+++|..+|....+-. +--...++.|...|-+.|++++|+..+++... +.|+ ...|
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~ 425 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADAL 425 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHH
Confidence 345678899999999999999999999988753 33456788999999999999999999999883 4555 5789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+.+...|...|+...|++.+.+. .+.|.. ..++.|...|...|+..+|+..|+.++++.|+.|+++..++..+.-..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999998 778875 6889999999999999999999999999999999999999988776666
Q ss_pred chH
Q 042503 452 WDD 454 (477)
Q Consensus 452 ~~~ 454 (477)
|.+
T Consensus 506 w~D 508 (966)
T KOG4626|consen 506 WTD 508 (966)
T ss_pred ccc
Confidence 555
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=6.8e-24 Score=218.61 Aligned_cols=411 Identities=11% Similarity=0.020 Sum_probs=331.5
Q ss_pred HHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc---cHH---------
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY---TFA--------- 104 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~--------- 104 (477)
....+...|++++|+..|++..+ | +...+..+..++.+.|++++|...|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 35667788999999999998765 4 66789999999999999999999999998753 4322 111
Q ss_pred ---HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHh
Q 042503 105 ---PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCK 178 (477)
Q Consensus 105 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 178 (477)
.....+.+.|++++|...++++++..+. +...+..+..++...|++++|++.|++..+ | +...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 1234567899999999999999997543 566778889999999999999999999876 3 3456666666664
Q ss_pred cCChHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 179 KGDVDKGLYLFREMRERS------------VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
.++.++|...++.+.... ...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 567899999998776421 2245567778889999999999999998863 335566778888999999
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC----c---------eeHHHHHHHHHhcC
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN----V---------VSWNAMISGLAFNG 313 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~ 313 (477)
++++|...++.+.+.. |.++..+..+...+...++.++|...++.+.... . ..+..+...+...|
T Consensus 510 ~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 510 QRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999999876 6677777777777888999999999999886421 1 11234456788899
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999872 2566677788899999999999999999999853 2567788999999999999999999999
Q ss_pred Hhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 394 RSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG------NYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 394 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.. ...|+ ...+..+..++...|++++|.+++++++...|.++. .+..++.++...|++++|+..+++...
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988 44554 566777888999999999999999999988765543 566778999999999999999999864
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-24 Score=190.58 Aligned_cols=420 Identities=13% Similarity=0.119 Sum_probs=350.1
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG 114 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 114 (477)
..+....-+.|++++|++.-...-. | +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 3455556677899998887665543 2 2222333344566666666555443333332 3456788999999999999
Q ss_pred CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHH-hHHHHHHHHhcCChHHHHHHHHh
Q 042503 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIV-RNLMIHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 191 (477)
+++.|...++.+++..++ ....|..+..++...|+.+.|.+.|....+ |+... .+.+.......|++++|...+.+
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999999996544 678999999999999999999999998877 54443 33455566678999999999988
Q ss_pred cCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 192 MRE--RS-VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD-EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 192 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
..+ |. ..+|+.|...+-.+|+...|++.|++..+. .|+ ...|..+...|...+.++.|...+.++.... |..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~ 285 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNH 285 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--Ccc
Confidence 775 43 357999999999999999999999998875 454 4568889999999999999999999999887 888
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR--KN-VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
..++..+...|..+|.+|.|+..+++..+ |+ +..|+.|..++...|+..+|++.|.+..... +......+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 88999999999999999999999999876 43 3689999999999999999999999999874 55678899999999
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 422 (477)
...|.++.|..+|....+- .+--...++.|...|.++|++++|+..+++. .++|+. ..++.++..|-..|+.+.|+
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999998842 2334567899999999999999999999998 889987 68999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 423 HAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+.+++..+|.-.+++..|+.+|..+|+..+|+.-++..++..
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987753
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.1e-23 Score=198.45 Aligned_cols=419 Identities=11% Similarity=-0.013 Sum_probs=277.8
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3445556666777777777766554 555666666666777777777777777666643 2234456666666667777
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER 195 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 195 (477)
+++|..-+..+...+...+.. ...++..+........+...++.-.. +...+..+.. |...........-+....+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 777766665544332111111 11111111111112223333322221 1111111111 11111111111111111111
Q ss_pred Ch---hhHHHHHHHH---HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 196 SV---VSWNLMISSL---GKSGRDSEALRLFHEMRDQA-FEL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 196 ~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+. ..+..+...+ ...+++++|...|+.....+ ..| ....+..+...+...|+++.|...++.+.... |..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc
Confidence 11 1111111111 23468899999999988764 234 34456677777888999999999999999887 777
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 88888999999999999999999988765 356788888999999999999999999998875 55677888888899
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-H-------HHHHHHHHHHHc
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-A-------IWGSLLSSCRTH 415 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~ 415 (477)
.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998842 3556778889999999999999999999997 444431 1 122222233446
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|++++|.+.++++++++|.+..++..++.++.+.|++++|++++++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999998765
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=5e-21 Score=188.98 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=172.0
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLA 310 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 310 (477)
..+..+..++.. ++.++|...+....... |.+ .....+...+...|++++|...|+++.. ++...+..+..++.
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 334444444443 56666777666666554 332 2233445555688889999888887654 34445666677788
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
+.|++++|..++++..+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8899999999999888765 334444444444555669999999999998842 467888899999999999999999
Q ss_pred HHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 391 DLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 391 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+++. ...|+ ...++.+..++...|++++|+..++++++..|.++.++..++.++...|++++|...+++.++..
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999998 55554 46788888899999999999999999999999999999999999999999999999999998764
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.3e-23 Score=188.46 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=202.0
Q ss_pred hcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccCcccch
Q 042503 178 KKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD---EATVVAVLPICARLGAVDIG 251 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 251 (477)
..|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444443 1 223445555555555555555555555554321111 12344455555555666666
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc--------eeHHHHHHHHHhcCCchHHHHHHH
Q 042503 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV--------VSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++ ..+..+...+.+.|++++|...++
T Consensus 127 ~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 127 EELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66665555543 45555566666666666777766666666543211 134556677788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
++.+.. +.+...+..+...+.+.|++++|.++++++.+ .+......+++.++.+|...|++++|.+.++++ ...|+.
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 998764 44566788888999999999999999999984 221122456788899999999999999999998 667888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE---GGRWDDAETLRMWMRENNVKKSPGQ 473 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 473 (477)
..+..++..+.+.|++++|..+++++++..|+++ .+..++..+.. .|+.+++..+++++.+.+++++|.+
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7788899999999999999999999999999765 55555555543 5699999999999999999999874
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2e-20 Score=184.75 Aligned_cols=444 Identities=11% Similarity=0.016 Sum_probs=256.0
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLF 88 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (477)
..|++++|...++..++..+ .++.++..+...|...|+.++|+..+++..+ |+-..|..++..+ +++.+|.+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 44888888888888888873 3478888888888888888888888888776 4333333333222 7777888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHh-----hccCCchhHHHHHHHHHHhcccCcchHHHHH-HHHHHhcCChhhHHHHhcccC
Q 042503 89 ALLKNLGIWPDEYTFAPLLKAC-----LGVGDLRVGQCVHGEIIRSGFERFGSIRIGV-VELYTSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 89 ~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~ 162 (477)
+++.+.. +-+..++..+.... ....+.++|.+.++ .....+.|+..+.... ..+|.+.|++++|++++.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8887753 22233333333320 11222244444444 2222222233333333 555556666666666555554
Q ss_pred C---CchHHhHHHHHHHHh-cCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHH-
Q 042503 163 H---RDVIVRNLMIHGFCK-KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFE-LDEATVV- 236 (477)
Q Consensus 163 ~---~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~- 236 (477)
+ .+......+...|.. .++ +++..+++...+.+...+..++..+.+.|+.++|..+++++...... |...++.
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 4 122223333344444 233 44444444333334444555555555555555555555443221000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 042503 237 -------------------------------------------------------------------------------- 236 (477)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (477)
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence
Q ss_pred ------------HHHHHhhccCcccchHHHHHHHHHh-CC----------------------------------------
Q 042503 237 ------------AVLPICARLGAVDIGQWIHSYAESS-GL---------------------------------------- 263 (477)
Q Consensus 237 ------------~l~~~~~~~~~~~~a~~~~~~~~~~-~~---------------------------------------- 263 (477)
.+.-...+.|+.++|..+++..... +-
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 0000011223333333333333221 00
Q ss_pred ----------------------ccc--hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHH--HHHHHhcCCchH
Q 042503 264 ----------------------YRK--VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAM--ISGLAFNGRGEL 317 (477)
Q Consensus 264 ----------------------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~ 317 (477)
.|+ +...+..+..++.. +++++|...+.+.....+..+..+ ...+...|++++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHH
Confidence 011 33333334444433 444455554444333222223333 233346777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
|...++++... +|+...+..+..++.+.|+.++|...++...+ .. +++...+..+.....+.|++++|...+++.
T Consensus 528 Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 528 ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88877776543 44444555666677778888888888888774 21 333333334444455669999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++.++..
T Consensus 604 ~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 604 NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7778888999999999999999999999999999999999999999999999999999999999998764
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-20 Score=182.21 Aligned_cols=356 Identities=11% Similarity=-0.030 Sum_probs=214.9
Q ss_pred hhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchh
Q 042503 45 GTLNEIKYATKIFNQMRN------PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRV 118 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 118 (477)
.+..+|+.---+|...++ .+......++..+.+.|++++|..+++...... +-+...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 455666666666665554 233445566777888899999999988888753 3345566666677777889999
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC-
Q 042503 119 GQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE- 194 (477)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 194 (477)
|...++.+++..+. +...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999988886443 556677777888888888888888887765 3 345566667777777777777777765532
Q ss_pred -CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH
Q 042503 195 -RSV-VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN 272 (477)
Q Consensus 195 -~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (477)
|+. ..+..+ ..+...|++++|...++.+......++......+...+...|++++|...++.+.... |.+...+.
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~ 250 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRR 250 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 222 222222 3356667777777777766554322333333334445555566666666666555554 44444444
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
.+...+...|++++|. .+|...+++..+.. +.+...+..+...+...|++++
T Consensus 251 ~Lg~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 251 SLGLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4444444444444310 02556666665543 3345556666666666666666
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI-WGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|...++++.+.. +.+...+..+..++.+.|++++|++.|+++ ...|+... +..+..++...|+.++|...|+++++
T Consensus 303 A~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666665321 333445555666666666666666666665 33444322 23344556666666666666666666
Q ss_pred cCCCC
Q 042503 431 LEPWN 435 (477)
Q Consensus 431 ~~p~~ 435 (477)
..|.+
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 66554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=4.6e-20 Score=182.13 Aligned_cols=400 Identities=11% Similarity=0.038 Sum_probs=241.9
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLL 107 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 107 (477)
+.++....-.+.+....|+.++|+++|..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45666677777888888999999888887664 333457888888888899999999988887753 44556667777
Q ss_pred HHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHH
Q 042503 108 KACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDK 184 (477)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 184 (477)
..+...|++++|...++++++..+. +.. +..+..++...|++++|+..++++.+ | +...+..+...+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 7888888888888888888876433 444 77777888888888888888888766 3 34445566667777777788
Q ss_pred HHHHHHhcCC-CCh------hhHHHHHHHHHh-----cCCh---hHHHHHHHHHHHc-CCCCCHH-HHHHHHHHhhccCc
Q 042503 185 GLYLFREMRE-RSV------VSWNLMISSLGK-----SGRD---SEALRLFHEMRDQ-AFELDEA-TVVAVLPICARLGA 247 (477)
Q Consensus 185 a~~~~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~~l~~~~~~~~~ 247 (477)
|++.++.... |+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~----------- 237 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ----------- 237 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-----------
Confidence 8887776665 110 011111221111 1122 4455555555533 1112110 000
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC---ce-eHHHHHHHHHhcCCchHHHHHHH
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN---VV-SWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
......+..+...|++++|+..|+++.+.+ +. ....+..++...|++++|..+|+
T Consensus 238 ---------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 238 ---------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 000011222334455555555555555421 11 11123445566666666666666
Q ss_pred HHHHcCCCC---CHHHHHHHHHHhhccccHHHHHHHHHHhhhccC----------CCCC---hHHHHHHHHHHHhcCCHH
Q 042503 324 QMIAKGVSP---NKATFVGVLTCCAHAGLVEKARELFASMTGLHS----------IVPN---LEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 324 ~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~ 387 (477)
++....... .......+..++...|++++|...++.+.+... -.|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 655432110 122344444455666666666666666653210 0122 123445566667777777
Q ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 388 EAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 388 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+|++.++++ .. +.+...+..++..+...|++++|++.++++++..|+++..+..++..+.+.|++++|..+++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777776 22 3344566667777777777777777777777777777777777777777777777777777777654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.7e-20 Score=178.90 Aligned_cols=419 Identities=10% Similarity=-0.015 Sum_probs=299.5
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGP 80 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 80 (477)
..-..+...|+++.|...++..++.. |++..|..+..+|.+.|++++|++.++...+ .+..+|..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34556778899999999999988765 6778899999999999999999999998776 345688999999999999
Q ss_pred CchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 81 SEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
+++|+.-|......+ ..+......++..... ..+........+... ++...+..+.. |...........-++.
T Consensus 210 ~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 999999888776542 1111111122221111 122333333333221 22222222222 2222222222222222
Q ss_pred cCCCch---HHhHHHHHH---HHhcCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042503 161 MSHRDV---IVRNLMIHG---FCKKGDVDKGLYLFREMRER------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF 228 (477)
Q Consensus 161 ~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 228 (477)
..+.+. ..+..+... ....+++++|.+.|++..+. ....|+.+...+...|++++|+..|++.....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 211111 111111111 12357899999999987742 34568888889999999999999999988763
Q ss_pred CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHH
Q 042503 229 ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAM 305 (477)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 305 (477)
+-+...|..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...|++..+ | +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 2235678888888999999999999999999887 78889999999999999999999999998875 3 44567778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC-CC---Ch-HHHHHHHHHH
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI-VP---NL-EHYGCMVDVL 380 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~ 380 (477)
..++.+.|++++|+..+++..... +.+...++.+..++...|++++|+..|++..+...- .+ +. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 888999999999999999998764 556888999999999999999999999998742210 01 11 1122223334
Q ss_pred HhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 381 GRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
...|++++|.+++++. ...|+. ..+..++..+.+.|++++|...|+++.++.+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 4579999999999997 556655 578889999999999999999999999988753
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.6e-20 Score=178.26 Aligned_cols=328 Identities=13% Similarity=0.039 Sum_probs=228.4
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCCh
Q 042503 103 FAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (477)
...++..+.+.|+++.|..+++.++...+.+ ......++.+....|++++|...++++...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~----------------- 106 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN----------------- 106 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----------------
Confidence 3444455555566666666665555543332 2223333333344455555555444443300
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 183 DKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
..+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++.|...++.+....
T Consensus 107 -----------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 107 -----------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred -----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 0233345555666666666666666666665542 2234455555666666666666666666665554
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN----VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFV 338 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 338 (477)
|.+...+..+ ..+...|++++|...++.+.+.+ ...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3444444333 34677788888888888765532 2234445677889999999999999999875 56778888
Q ss_pred HHHHHhhccccHHH----HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHH
Q 042503 339 GVLTCCAHAGLVEK----ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSC 412 (477)
Q Consensus 339 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 412 (477)
.+...+...|++++ |...|+++.+. .+.+...+..+...+.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999885 89999999843 2556778999999999999999999999998 55555 46778888999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|...++++.+..|.++..+..++.++...|++++|...+++.++..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999887777778899999999999999999998764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.7e-21 Score=175.02 Aligned_cols=282 Identities=12% Similarity=0.110 Sum_probs=137.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCc---chHHHHHHHHHHhc
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF---GSIRIGVVELYTSC 148 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 148 (477)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.++..+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334455666777777777776643 23444566666666666666666666666655322111 12344555555555
Q ss_pred CChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC--C------hhhHHHHHHHHHhcCChhHHH
Q 042503 149 GQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER--S------VVSWNLMISSLGKSGRDSEAL 217 (477)
Q Consensus 149 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~ 217 (477)
|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+...|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 555555555555543 23334444444444444444444444444321 0 012233344444455555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 042503 218 RLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR- 296 (477)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 296 (477)
..|+++.+ .. +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 201 ~~~~~al~-----------------------------------~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 201 ALLKKALA-----------------------------------AD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHh-----------------------------------HC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555443 32 33333344444444444444444444444432
Q ss_pred -CC--ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH
Q 042503 297 -KN--VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 297 -~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
|+ ..+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~ 318 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGF 318 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHH
Confidence 11 123444455555555555555555555543 233333445555555555555555555554421 3444455
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhc
Q 042503 374 GCMVDVLGR---SGCVREAYDLIRSM 396 (477)
Q Consensus 374 ~~l~~~~~~---~g~~~~A~~~~~~~ 396 (477)
+.++..+.. .|+.++++.+++++
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHH
Confidence 444444332 33555555555544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.4e-18 Score=171.62 Aligned_cols=407 Identities=9% Similarity=-0.018 Sum_probs=276.7
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 79 (477)
...+......|+.++|..++....... +.+...+..+..++...|++++|..+|++... .+...+..++..+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345677888999999999999988743 44556788999999999999999999999654 45667888889999999
Q ss_pred CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhc
Q 042503 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (477)
++++|...+++..+.. +.+.. +..+..++...|+.++|...++++++..+. +...+..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998863 44555 888888899999999999999999997554 55666678888889999999999999
Q ss_pred ccCC-Cch------HHhHHHHHHHHh-----cCCh---HHHHHHHHhcCC-----CChh-hH----HHHHHHHHhcCChh
Q 042503 160 EMSH-RDV------IVRNLMIHGFCK-----KGDV---DKGLYLFREMRE-----RSVV-SW----NLMISSLGKSGRDS 214 (477)
Q Consensus 160 ~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~-----~~~~-~~----~~l~~~~~~~~~~~ 214 (477)
.... |+. .....+++.... .+++ ++|++.++.+.+ |+.. .+ ...+.++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 8776 221 112223332221 2233 678887777763 2221 11 11134556779999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch----hHHHHHHHHHHHhcCChHHHHH
Q 042503 215 EALRLFHEMRDQAFE-LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV----VSVGNALVDFYCKCGILDTARN 289 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 289 (477)
+|+..|+.+.+.+.+ |+. ....+...+...|++++|...++.+.+.. +.+ ......+..++...|++++|..
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999887532 322 11224556777777777777777766544 211 2233444445555555555555
Q ss_pred HhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCC
Q 042503 290 VFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSI 366 (477)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (477)
+++.+...++.....+ . ...-.|+ ...+..+...+...|++++|++.++++... .
T Consensus 332 ~l~~~~~~~P~~~~~~-----------------~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~ 389 (765)
T PRK10049 332 VTAHTINNSPPFLRLY-----------------G---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A 389 (765)
T ss_pred HHHHHhhcCCceEeec-----------------C---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 5555443211100000 0 0000223 123445666677778888888888887732 3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
|.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..|+++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 555667777778888888888888888877 55555 4566666667778888888888888888888876643
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.9e-19 Score=167.34 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=299.2
Q ss_pred CchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCC------CcchHHHHHHHHHhcCCCchHHHH
Q 042503 14 TRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP------SVLLFNSMIKAYSLNGPSEEPVKL 87 (477)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 87 (477)
.+..+.+.+....... +.+|.+.+.|..-|.-.|+++.+..+...+... -..+|-.+.++|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3344444444444443 345666777777777777777777776665541 123566677777777777777777
Q ss_pred HHHHHhCCCCCCcc--cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC----ChhhHHHHhccc
Q 042503 88 FALLKNLGIWPDEY--TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG----QMDDGMKVFDEM 161 (477)
Q Consensus 88 ~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 161 (477)
|.+..+.. |+.. .+.-+.+.+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++...
T Consensus 330 Y~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 330 YMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 76666543 4433 334456677777777777777777776532 24455555666666554 455666666655
Q ss_pred CC---CchHHhHHHHHHHHhcCChHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---C
Q 042503 162 SH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--------ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQ---A 227 (477)
Q Consensus 162 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~ 227 (477)
.+ .|...|-.+...+...+- -.++..|.... ...+...|.+...+...|+++.|...|...... .
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 54 344455555544443332 22244444332 245567788888888888888888888887654 2
Q ss_pred CCCCH------HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CC
Q 042503 228 FELDE------ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KN 298 (477)
Q Consensus 228 ~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 298 (477)
..+|. .+--.+..+.-..++.+.|.+.+..+.+.. |.-+..|..++.+....+...+|...+..+.. .+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 23333 123345556666778888888888888887 66666666666555566778888888887764 56
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc------------cccHHHHHHHHHHhhhccC
Q 042503 299 VVSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCAH------------AGLVEKARELFASMTGLHS 365 (477)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 365 (477)
+..++.+...+.+...+..|..-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.. .
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~ 641 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--N 641 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--c
Confidence 667777777888888887777766665543 223566666666665542 2457788888888873 3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHH
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE--PWNSGNYVL 441 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~ 441 (477)
.|.|...-|.+.-+++..|++.+|..+|.+. .......+|..+..+|...|++-.|+++|+...+.. .+++.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4667788888888999999999999999888 333455788889999999999999999999987654 456778899
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|++++.+.|++.+|.+.+...+...
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999988887776653
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=6.8e-18 Score=163.66 Aligned_cols=416 Identities=10% Similarity=-0.015 Sum_probs=218.4
Q ss_pred HhhcCChhHHHHHhccCCC--CCcc-hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHH--HHHhhccCCch
Q 042503 44 CGTLNEIKYATKIFNQMRN--PSVL-LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPL--LKACLGVGDLR 117 (477)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~~~~~ 117 (477)
..+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+.. .+..+ ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHH
Confidence 4455666666666666654 3321 122555555666666666666666651 2222 22222 33555556666
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE- 194 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 194 (477)
+|.++++++++..+. +...+..++..+...++.++|++.++.+.. |+...+..++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 666666666665443 344455556666666666666666666655 3322332222222223444446666666654
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHHh-----hccCccc---chHHHHHHH
Q 042503 195 -R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT------VVAVLPIC-----ARLGAVD---IGQWIHSYA 258 (477)
Q Consensus 195 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l~~~~-----~~~~~~~---~a~~~~~~~ 258 (477)
| +...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ...+++. .+..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 3344555556666666666666555432211 1111100 01111000 0111222 222223333
Q ss_pred HHhCC-ccch----hHHHHHHHHHHHhcCChHHHHHHhccCCCCC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 042503 259 ESSGL-YRKV----VSVGNALVDFYCKCGILDTARNVFKEIPRKN----VVSWNAMISGLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 259 ~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
...-. .|+. ..+..-.+-++...|++.++++.|+.+..+. ..+-..+..+|...+++++|..+|+.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 32110 0211 1111233445566677777777777766422 1234455666777777777777777765532
Q ss_pred -----CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC----------CCCh---HHHHHHHHHHHhcCCHHHHHH
Q 042503 330 -----VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI----------VPNL---EHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 330 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.+++......|..++...+++++|..+++.+.+.... .|+. ..+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223333456666677777777777777776631110 1111 223345556667777777777
Q ss_pred HHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 392 LIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 392 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.++++ .-+-|......+...+...|.+.+|++.++.+..++|.+..+....+..+...|++.+|..+.+.+.+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77776 223355666667777777777777777777777777777777777777777777777777776666554
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.4e-18 Score=157.81 Aligned_cols=456 Identities=13% Similarity=0.061 Sum_probs=252.9
Q ss_pred HHHHHHHhh--cCCCchhHhHHHHHHHHhhc--ccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHH--
Q 042503 2 ERKILRLLH--GRNTRTHLTQIHAHFLRHKL--HQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAY-- 75 (477)
Q Consensus 2 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-- 75 (477)
+.-|.++|. ..+++..|..+|...+...+ +||+. ..+..++.+.|+.+.|+..|+...+.|+...++++...
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 445556665 55788899999998776653 44443 34446677888888888888887774444333333221
Q ss_pred -Hhc---CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhccc--CcchHHHHHHHHHHhcC
Q 042503 76 -SLN---GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE--RFGSIRIGVVELYTSCG 149 (477)
Q Consensus 76 -~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 149 (477)
... ..+..++.++...-..+ .-++...+.|.+.+.-.|++..+..+...++..... .-...|-.+.++|...|
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 122 23344555554444432 446777777888888888888888888877765321 12334666788888888
Q ss_pred ChhhHHHHhcccCC--Cch--HHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcC----ChhHHHH
Q 042503 150 QMDDGMKVFDEMSH--RDV--IVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSG----RDSEALR 218 (477)
Q Consensus 150 ~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~ 218 (477)
++++|...|.+..+ ++. ..+..+...|.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 88888888877665 332 3345667788888888888888887764 3 3345555555555553 3445555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHH----HHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 219 LFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYA----ESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
++.+..+.- +.|...|..+...+....-+.. ...+..+ ...+. +..+...+.+...+...|++..|...|...
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 555544432 3455556555555544433332 4444333 33444 455556677777777777777777776654
Q ss_pred CC-------CCce------eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 295 PR-------KNVV------SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 295 ~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.. ++.. +-..+....-..++++.|...|+.+.... |.=...|..++...-..+...+|...+..+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 42 1111 11122333334456666666666666542 2122233333322223345555555555555
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHH------------cCChHHHHHHH
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPNAAIWGSLLSSCRT------------HGHVELAEHAV 425 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~ 425 (477)
.. ...++..+..+...+.+...+..|.+-|+.. ...+|..+...|++.|.+ .+..++|+++|
T Consensus 558 ~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 558 NI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred hc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 22 2333334444455555555555554433332 223444444445444422 22344555555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++++.+|.|..+-+.++-+++..|++.+|..+|.++++..
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555543
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=7.2e-19 Score=150.25 Aligned_cols=442 Identities=12% Similarity=0.100 Sum_probs=293.0
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHH-hHHHHHhhcCChhHHHHHhccCCC--CC------cchHHHHH
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILA-HFVSVCGTLNEIKYATKIFNQMRN--PS------VLLFNSMI 72 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~l~ 72 (477)
+..|..-+..+....+|+.-++-+++....|+..... .+...+.+..++.+|++.|+.... |+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4455555555666666777777777766666554332 234566677777777777765443 22 22344555
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC------------cchHHHH
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER------------FGSIRIG 140 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~ 140 (477)
-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..++.....| +....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5667777788888777777764 3665554444545555677777777777776533222 2222221
Q ss_pred HH-----HHHHhcC--ChhhHHH----HhcccCCCchH-------------HhH--------HHHHHHHhcCChHHHHHH
Q 042503 141 VV-----ELYTSCG--QMDDGMK----VFDEMSHRDVI-------------VRN--------LMIHGFCKKGDVDKGLYL 188 (477)
Q Consensus 141 l~-----~~~~~~g--~~~~A~~----~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~ 188 (477)
.+ .-.-+.+ +.++++- ++.-...|+-. .+. .-...+.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 11 1111111 1222221 11111112210 000 112235667888888877
Q ss_pred HHhcCCCChhhHHHHH-----HHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 189 FREMRERSVVSWNLMI-----SSLGK-SGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 189 ~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
+.-..+.|..+-.+.. --|.+ -.++..|.++-+...... .-+......-.+.....|++++|...++++....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 7777654443322211 11222 234666666555544332 2233333333344556789999999999998776
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 339 (477)
.........+.-.+...|++++|++.|-++. ..+......+...|-...+...|++++.+.... ++.|+..++.
T Consensus 521 --asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 --ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred --hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 4444444556667888999999999988764 367777778888888899999999999887765 5778899999
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHH-HcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCR-THGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~ 417 (477)
|...|-+.|+-..|.+.+-.-- .-++.+..+...|..-|....-+++++.+|++. -++|+..-|..|+..|. +.|+
T Consensus 598 l~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 9999999999999998876554 346788999999999999999999999999999 77999999999887765 5899
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+++|.++|+...+..|.+.+++..|++.....|.
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999999888774
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=7.8e-17 Score=156.39 Aligned_cols=387 Identities=15% Similarity=0.050 Sum_probs=282.2
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
-...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..+++.+.. -.........++..+...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 3557899999999999999985 35542 2237888888889999999999998711 111222333346688899999
Q ss_pred hhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042503 152 DDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQ 226 (477)
Q Consensus 152 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 226 (477)
++|+++|+++.+ .+...+..++..+...++.++|++.++++.. |+...+-.++..+...++..+|+..++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999987 3456677888899999999999999999987 44444434444444466676699999999987
Q ss_pred CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHH------HHHHHHH---H--hcCC---hHHHHHHhc
Q 042503 227 AFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVG------NALVDFY---C--KCGI---LDTARNVFK 292 (477)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~~~a~~~~~ 292 (477)
. +-+...+..+..+..+.|-...|.++...-...-. +....+ ...++.- . ...+ .+.|+.-++
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 4 44667778888888999988888877665332211 111000 1111110 0 1112 334444444
Q ss_pred cCCC-----CCce-eH-H---HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 293 EIPR-----KNVV-SW-N---AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 293 ~~~~-----~~~~-~~-~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
.+.. |... .| . =.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 4432 2211 11 1 23456788999999999999999988765666888999999999999999999999874
Q ss_pred ccC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-------------CCH---HHHHHHHHHHHHcCChHHH
Q 042503 363 LHS----IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-------------PNA---AIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 363 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-------------p~~---~~~~~l~~~~~~~~~~~~a 421 (477)
..+ .+++......|.-+|...+++++|..+++++ ... |++ ..+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 332 2334444678899999999999999999998 212 222 2345567778899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.++++....|.|+.....++.++...|.+.+|.+.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999776654
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=3.4e-15 Score=133.60 Aligned_cols=451 Identities=13% Similarity=0.084 Sum_probs=282.1
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHH
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
.....+.+.|.-++....+.= +.+...+. ++++..-++.|.+++++.++ .+...|.+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334444444555555554442 22333332 33444445555555554443 44555555554445556665555
Q ss_pred HHHHH----HHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC--cchHHHHHHHHHHhcCChhhHHHHhc
Q 042503 86 KLFAL----LKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER--FGSIRIGVVELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 86 ~~~~~----~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (477)
+++.+ +...|+..+...|..=...|-..|..-.+..+....+..|++. -..+|..-.+.|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 55543 2334555555555555555555555555555555555555442 12345555555555555555555555
Q ss_pred ccCC---CchH----------------------------------HhHHHHHHHHhcCChHHHHHHHHhcCC--C-Chhh
Q 042503 160 EMSH---RDVI----------------------------------VRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVS 199 (477)
Q Consensus 160 ~~~~---~~~~----------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 199 (477)
...+ .+.. .|-.....+-..|++..|..++....+ | +...
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 4443 1222 233333444445666666666665544 2 3335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|-.-+.......+++.|..+|.+... ..|+...|..-+..---.+..++|.++++...+.- |.....|-.+.+.+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHH
Confidence 55555666666677777777766554 34566666555555555667777777777777665 666777777777777
Q ss_pred hcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
+.++.+.|...|..-.+ | .+..|-.+...--+.|+.-.|..++++..-.+ +-+...|...++.-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766554 3 33456666565566677777777777777665 55677777777777777777777777
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..+..+ .++.+...|..-|....+.++-......+++. ..|+.....+...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 777763 34566666776676666666666666666665 34566777788888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
++|..+...+.+.|.-++-.+++.+.... .|.-|-.|
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W 888 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELW 888 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHH
Confidence 99999999999999988888888887664 45555555
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.1e-14 Score=124.00 Aligned_cols=393 Identities=13% Similarity=0.164 Sum_probs=247.3
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcC--ChhHH-HH-----------------------HhccCCC
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLN--EIKYA-TK-----------------------IFNQMRN 62 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~-----------------------~~~~~~~ 62 (477)
...+|.+..+.-+++.|.+.|++.++.+...++..-+-.+ ++--| .+ ++-+...
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567888999999999999999988888777766543322 11111 11 2222222
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVV 142 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (477)
.+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|+...+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 455677888888888777788888888777776677777888777664322 2266777777777777777777777
Q ss_pred HHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhH-HH
Q 042503 143 ELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR----ERSVVSWNLMISSLGKSGRDSE-AL 217 (477)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~-a~ 217 (477)
.+..+.|+++.|... |.+++.+|. +|...+|..++..+.+.+++.+ +.
T Consensus 281 ~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 777777777665532 333444443 3788888888888888877644 45
Q ss_pred HHHHHHHHc----CCC---C-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCC---cc---chhHHHHHHHHHHHhcCC
Q 042503 218 RLFHEMRDQ----AFE---L-DEATVVAVLPICARLGAVDIGQWIHSYAESSGL---YR---KVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 218 ~~~~~m~~~----~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~ 283 (477)
.++.+++.. .++ | |...|...+..|.+..+.+.|.++......... .+ .....|..+..+.+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 222 2 455677888888888898888888877654322 11 223345667777778888
Q ss_pred hHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-cH--------
Q 042503 284 LDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-LV-------- 350 (477)
Q Consensus 284 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~-------- 350 (477)
.+.-...|+.+.. |+..+...++++..-.|.++-.-++|.+++..|...+.....-++..+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 8888888888765 6667777777888888888888888888888875555444444444444433 11
Q ss_pred H-----HHHHHHHHhhh----ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHH
Q 042503 351 E-----KARELFASMTG----LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 351 ~-----~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~ 414 (477)
. -|..+++.... .....-.....+.+.-.+.+.|+.++|.++|.-. ...|......-++....+
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 1 11112211110 0011222334455555666777777777666555 122333333344455556
Q ss_pred cCChHHHHHHHHHHHhcC
Q 042503 415 HGHVELAEHAVKELINLE 432 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~ 432 (477)
.++...|..+++-+...+
T Consensus 574 ~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 666777777777665554
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.6e-15 Score=131.08 Aligned_cols=385 Identities=14% Similarity=0.085 Sum_probs=261.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHH
Q 042503 68 FNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYT 146 (477)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (477)
+....+-|.++|.+++|++.|.+.++ ..|+ +..|.....+|...|+++++.+--...++.+++ .+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44566778899999999999999998 4688 778888888889999999988888777774333 3445666667777
Q ss_pred hcCChhhHHHH------hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhh------------------
Q 042503 147 SCGQMDDGMKV------FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVS------------------ 199 (477)
Q Consensus 147 ~~g~~~~A~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~------------------ 199 (477)
..|++++|+.- ++......+ ..++.-..+.--..++.+-+.+-.. |+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 88888887632 111111110 0011100111111222222221111 11111
Q ss_pred -----HHHHHHHHHh--cC---ChhHHHHHHHHHHHcC-CCC-----CHHH----HHHHHH--HhhccCcccchHHHHHH
Q 042503 200 -----WNLMISSLGK--SG---RDSEALRLFHEMRDQA-FEL-----DEAT----VVAVLP--ICARLGAVDIGQWIHSY 257 (477)
Q Consensus 200 -----~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~-~~~-----~~~~----~~~l~~--~~~~~~~~~~a~~~~~~ 257 (477)
...+..++.. .+ .+..|.+.+.+-.... ..+ |... -..++. -+.-.|+.-.+..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 1112111111 11 2333333333211110 011 1111 111111 23446788889999999
Q ss_pred HHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH
Q 042503 258 AESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK 334 (477)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 334 (477)
+.+.. +..+..|-.+..+|...++.++....|....+ .|+.+|..-.+...-.+++++|..=|++.++.. +.+.
T Consensus 352 ~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~ 428 (606)
T KOG0547|consen 352 AIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENA 428 (606)
T ss_pred HHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhh
Confidence 99988 56666678888999999999999999988765 567888888888888899999999999999875 5567
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-------HHHH-
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-------AAIW- 405 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~- 405 (477)
..|..+.-+..+.+.+++++..|++.++ .+|..+.+|+.....+..++++++|.+.|+.. .+.|+ ...+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 7777777777889999999999999984 45777889999999999999999999999988 44443 2111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+.-+-.+.-.+++..|+.+++++++++|....++..|+....+.|+.++|+++|++-.
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111122234899999999999999999999999999999999999999999999764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=2.6e-18 Score=150.04 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=114.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 202 LMISSLGKSGRDSEALRLFHEMRDQAFELDEAT-VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
.+...+.+.|++++|+++++.......+|+... +..+...+...++++.|...++.+...+ +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 446677788888888888866544432344434 4445556667888888888888888877 5567777777777 78
Q ss_pred cCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.+++++|..+++..-+ +++..+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|+..+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999998887644 566778888889999999999999999987633 3567778888999999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
++..+.. |.|......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+..|.|
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9998532 446778889999999999999988888777 224555678899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.....++.++...|+.++|.++.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887754
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=4.8e-14 Score=126.34 Aligned_cols=411 Identities=12% Similarity=0.070 Sum_probs=327.8
Q ss_pred ChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHH
Q 042503 49 EIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEI 126 (477)
Q Consensus 49 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (477)
+.++|+.++....+ |.. .-|.-++++..-++.|..++++..+. ++.+...|.+....--..|+.+...+++++-
T Consensus 391 ~~~darilL~rAveccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445555554444 211 23444667778889999999999875 6778888888887778889999888887654
Q ss_pred H----HhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--
Q 042503 127 I----RSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-- 194 (477)
Q Consensus 127 ~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 194 (477)
+ ..|+..+...|..=...|-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4 468888888888888888888888888777776654 3346888888999999999999999988876
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 195 -RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 195 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.+...|...+..--..|..+....+|++.... ++-....+.......-..|++..|..++..+.+.. |.+..+|-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwla 623 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLA 623 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 34456777666666788999999999999887 34455666666777788899999999999999998 789999999
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
-+.....+..++.|..+|.+... +....|..-+....-.++.++|.+++++..+. ++.-...|..+.+.+.+.++.+
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999998765 66677777777777789999999999998876 3444567888888999999999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
.|...|..-. ..++-.+..|-.|.+.--+.|.+-+|..++++. ..+.+...|...++.-.+.|+.+.|..++.+++
T Consensus 703 ~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887665 334666778888888888999999999999998 445567889999999999999999999988887
Q ss_pred hcCCCC------------------------------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 430 NLEPWN------------------------------SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 430 ~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+..|.+ +......+..+....++++|.+.|.+.+..+...
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 655544 6677778888888889999999999988776433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=4.3e-15 Score=137.84 Aligned_cols=358 Identities=16% Similarity=0.154 Sum_probs=225.8
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc---CCCchHHhHHHHHHHHhcCChH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM---SHRDVIVRNLMIHGFCKKGDVD 183 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 183 (477)
.+.+...|++++|..++.++++..+. +...|-.|..+|-..|+.+++...+-.. ...|...|..+.....+.|.++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 33444558888888888888887544 6677888888888888888887655433 3356677878888888888888
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCcccchHHHHH
Q 042503 184 KGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVDIGQWIHS 256 (477)
Q Consensus 184 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 256 (477)
.|.-.|.+..+. +...+---+..|-+.|+...|...|.++.....+.|..-+. .+++.+...++.+.|.+.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888887762 33344445667778888888888888887764322222222 23334444444455555555
Q ss_pred HHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 042503 257 YAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP 332 (477)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 332 (477)
.....+....+...++.++..|.+...++.|......... +|..-|..- ..++ .....++. ...+..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-~~~~~~~~--~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-EEPNALCE--VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-cccccccc--CCCCCCc
Confidence 5544222133333334455555555555544443333221 111111000 0000 00000000 0012233
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC--CCCHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI--RPNAAIWGS 407 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~ 407 (477)
+... ..++-++.+.+..+....+..... ... ...+...|.-+..+|...|++.+|+++|..+ .. ..+...|..
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 3333 122333444444444444444444 233 3345677888999999999999999999999 22 234568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
++.+|...|.+++|.+.|++++...|++.++..+|+..|.+.|+.++|.+.++.+...+.+.-++++|
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999987555444566665
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=8.8e-14 Score=120.08 Aligned_cols=411 Identities=10% Similarity=0.088 Sum_probs=265.8
Q ss_pred hhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHH
Q 042503 45 GTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQ 120 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 120 (477)
..++++..|+++|+.... .+...|-.-+..-.++.....|..+++..... -|... .|-..+-.--..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345566677777777665 55566777777777777777788887777663 34332 2223333334567777888
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC----
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---- 194 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 194 (477)
++|+.-.+ ..|+...|++.+..-.+....+.|..++++..- |++.+|--..+--.++|.+..|.++|+...+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 88777665 567777888888777777788888888877543 7777777777777777888888777777664
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHH--------HHHHHHhC
Q 042503 195 --RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWI--------HSYAESSG 262 (477)
Q Consensus 195 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~ 262 (477)
.+...+.+....-.++..++.|.-+|+-.++. ++-+ ...|.....---+-|+....... ++..++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 12234555555555667777777777776665 2222 23344444333344554433322 34455555
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc-----eeHHHHH----H----HHHhcCCchHHHHHHHHHHHcC
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV-----VSWNAMI----S----GLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~l~----~----~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
|.+-.+|--.+..-...|+.+...++|++....-+ ..|...| + .-....+.+.+.++|+..++.
T Consensus 319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 67777777777777777888888888877654211 1122111 1 112456777777888777763
Q ss_pred CCCCHHHHHHHHHHh----hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHH
Q 042503 330 VSPNKATFVGVLTCC----AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAA 403 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 403 (477)
+|-..+||.-+--.| .++.++..|.+++.... |.-|...+|...|..-.+.++++.+..++++. ...| +..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 455566665443333 35567778888887776 34677777777777777888888888888877 4444 346
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|......-...|+.++|..+|+-+++....+ .-.|-.++..-...|.++.|..+++++++..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 77777777777788888888888777654222 2356666677777788888888888887653
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=8.4e-15 Score=125.69 Aligned_cols=422 Identities=12% Similarity=0.076 Sum_probs=292.4
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchH-HHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc--c----cH
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLF-NSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE--Y----TF 103 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~----~~ 103 (477)
.+...+.+.|.......+|+..|+-+.+ |+.-.. ..+...+.+..++.+|++.|+...+. .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 3445556667777778888888887766 554322 23556788888999999999887764 3332 2 33
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----------------CchH
Q 042503 104 APLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----------------RDVI 167 (477)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~ 167 (477)
+.+.-.+++.|.++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|..|.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34444578889999999999998874 45666666666677778888888888887754 2333
Q ss_pred HhHHH-----HHHHHhcC--ChHHHHHHHHhcCC----CChh-------------hHH--------HHHHHHHhcCChhH
Q 042503 168 VRNLM-----IHGFCKKG--DVDKGLYLFREMRE----RSVV-------------SWN--------LMISSLGKSGRDSE 215 (477)
Q Consensus 168 ~~~~l-----~~~~~~~~--~~~~a~~~~~~~~~----~~~~-------------~~~--------~l~~~~~~~~~~~~ 215 (477)
..+.- ++-.-+.+ +.++++-.--++.. |+-. .+. .-...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222 22222222 12222222222222 2211 011 11235678999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 216 ALRLFHEMRDQAFELDEATVVAV--LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
|+++++-+.+..-+.....-+.+ +.-+.-..++..|.++-+.++... ..++.....-.+.....|++++|.+.+++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888766433322222222 222223456777888877777666 55555555556666778999999999999
Q ss_pred CCCCCceeHHHHHH---HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh
Q 042503 294 IPRKNVVSWNAMIS---GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL 370 (477)
Q Consensus 294 ~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (477)
....|...-.++.. .+-..|+.++|+..|-++... +..+...+..+...|....+...|++++.+.. .-++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCH
Confidence 98877655444433 456789999999999888764 25577788888999999999999999998876 4467788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
.....|...|-+.|+-..|.+..-+. -++.+..+..-|...|....-.++++.+|+++.-+.|....--..++.++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 89999999999999999999887665 4456778888888888888889999999999998899644444455566778
Q ss_pred cCCchHHHHHHHHHHhC
Q 042503 449 GGRWDDAETLRMWMREN 465 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~~ 465 (477)
.|++.+|..+++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999987654
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=7.8e-14 Score=129.64 Aligned_cols=418 Identities=14% Similarity=0.157 Sum_probs=279.3
Q ss_pred hhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHH
Q 042503 45 GTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 121 (477)
.-.|+.++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.......|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 334888888888887765 445678888888888888888877665444332 4466777777777778888888888
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C--c----hHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R--D----VIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
+|.+.++..++ +...+-.-+..|-+.|+...|..-|.++.. | | ...-...++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888876543 444555566777788888888887777765 2 1 1122234566667777788888887766
Q ss_pred C-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHH
Q 042503 194 E-----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF---------------------------ELDEATVVAVLPI 241 (477)
Q Consensus 194 ~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~~~~~~~~~l~~~ 241 (477)
. -+...++.++..+.+...++.+......+..... .++... ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 4 2445678888888888888888888877766221 222222 122334
Q ss_pred hhccCcccchHHHHHHHHHhCC-ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCch
Q 042503 242 CARLGAVDIGQWIHSYAESSGL-YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGE 316 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 316 (477)
+......+....+......... +..++..+.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4556666777777777777663 156677888899999999999999999998875 35668899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh-------ccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG-------LHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
.|...|+..+... |.+...-..|...+.+.|+.++|.+++..+.. ..+..|+....-.....+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998874 55666777788888899999999999988641 122344444444556677788887775
Q ss_pred HHHHHhc--------CC-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-----H---hcCCCC-
Q 042503 390 YDLIRSM--------SI-----------------RPNAAIWGSLLSSCRTHGHVELAEHAVKEL-----I---NLEPWN- 435 (477)
Q Consensus 390 ~~~~~~~--------~~-----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~---~~~p~~- 435 (477)
+.+...+ -+ .-..........+-.+.++.......+..- . .+..++
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 5544333 01 111222333333333333322222222111 1 111111
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+..++..+.+.|++++|..+...+.+..
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 2456677788899999999999988887653
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.9e-13 Score=118.08 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=310.1
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHH
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVE 143 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (477)
+...|-....--...+++..|..+|+..+.-+ ..+...|...+..-.+...+..|..+++..+..-+. -...|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 44455555555566788899999999998854 446666777777778889999999999999886333 3345555555
Q ss_pred HHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--ERSVVSWNLMISSLGKSGRDSEALRL 219 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (477)
+--..|++..|.++|++-.+ |+...|.+.++.-.+-+.++.|..++++.. .|++.+|--.+..-.+.|....|..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56678999999999999876 999999999999999999999999999976 49999999999999999999999999
Q ss_pred HHHHHHc-CC-CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHH-------
Q 042503 220 FHEMRDQ-AF-ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNV------- 290 (477)
Q Consensus 220 ~~~m~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------- 290 (477)
|+...+. |- ..+...|.+...--.+...++.|..+++.+.+.-........|..+...--+-|+.....+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9987764 11 11223344444444566788999999999998863233366677777666667775554443
Q ss_pred -hccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHH-------HHHHHHHHh---hccccHHHHHHH
Q 042503 291 -FKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKA-------TFVGVLTCC---AHAGLVEKAREL 356 (477)
Q Consensus 291 -~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~---~~~~~~~~a~~~ 356 (477)
++++.+.|+ .+|--.+..--..|+.+...++|++.+.. ++|-.. .|..+=.+| ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333334444 45666666667789999999999999875 566321 222222222 356899999999
Q ss_pred HHHhhhccCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVL----GRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
++...+ -+|....||.-+-..| .++.++..|.+++-.. |.-|...+|...+..-.+.+++++...+|++.++-
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999883 4555666666554444 5788999999999988 99999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 432 EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
+|.+-.+|...+..-...|+++.|..+|+-.++......|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 9999999999999999999999999999999877543334
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-13 Score=121.76 Aligned_cols=453 Identities=10% Similarity=-0.010 Sum_probs=308.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhcC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQ--MRNPSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~~ 79 (477)
|+++++-+..+.++..|.-+-+.+...+ -||...--+++++.-.|+.+.|..+... +...|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4667777777888888888888887776 4445555667888888899988888764 34478888888889999999
Q ss_pred CCchHHHHHH----HHHhCC---------CCCCccc----HHHHHH-------HhhccCCchhHHHHHHHHHHhcccCcc
Q 042503 80 PSEEPVKLFA----LLKNLG---------IWPDEYT----FAPLLK-------ACLGVGDLRVGQCVHGEIIRSGFERFG 135 (477)
Q Consensus 80 ~~~~a~~~~~----~~~~~~---------~~p~~~~----~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (477)
+++.|..++. .+..-. +.+|..- -+.-.+ .+....++++|...|.+.+...+. ..
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~ 175 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CF 175 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hH
Confidence 9999999988 221100 1111111 111111 223344566666666666543322 11
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCC-----CchHHhHHHHHHHHhcCChHHHHHHH--HhcC--CCChhhHHHHHHH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSH-----RDVIVRNLMIHGFCKKGDVDKGLYLF--REMR--ERSVVSWNLMISS 206 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~~~~~l~~~ 206 (477)
..+..++....-. .++-..+++.+.- .+......+.....-...-+.....- +.+. +.++........-
T Consensus 176 Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 176 EAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred HHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 1222222221110 1122222222110 11111111111000000000000000 0000 1344455556677
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+...+++.+...+.+...+.. ++....+..-|.++...|+..+-..+-..+++.. |..+..|-++.-.|...|+..+
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHH
Confidence 788899999999999988774 6677777777778889999888888888888887 8999999999999999999999
Q ss_pred HHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|++.|.+...-|. ..|-.+..+|+-.|..+.|+..+....+.= +-...-+--+.--|.+.++.+.|.+.|.....
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a- 408 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA- 408 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh-
Confidence 9999998765443 579999999999999999999998877631 21222223344457788999999999999873
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SI---RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
-.|.|+...+-+.-.....+.+.+|..+|+.. .+ .+ -.++++.|+.+|.+.+.+++|+..+++++.+.|.
T Consensus 409 -i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 -IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred -cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 23567778888888888889999999999877 11 11 4567899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.++..++..|...|+++.|+..|.+.+-.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999887653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4.6e-14 Score=128.97 Aligned_cols=276 Identities=11% Similarity=0.090 Sum_probs=188.5
Q ss_pred cCChHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCcccchHH
Q 042503 179 KGDVDKGLYLFREMRER--SVV-SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV--AVLPICARLGAVDIGQW 253 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 253 (477)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46777777666655442 222 2323334446777777777777777654 44443322 33456677777777777
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---e--------eHHHHHHHHHhcCCchHHHHHH
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---V--------SWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... . .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777 77777777888888888888888877777665221 1 2223333333444555666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN 401 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 401 (477)
+.+... .+.+......+...+...|+.++|..++++..+ . +|+.... ++.+....++.+++.+.+++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665443 255777788888888899999999999988873 2 4554322 233444568888898888888 44554
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 402 -AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 402 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..+..+...|.+.|++++|.+.|+++.+..|+ ...+..++.++.+.|+.++|.+++++-...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778888899999999999999999998886 456778999999999999999988877653
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.1e-13 Score=116.40 Aligned_cols=353 Identities=12% Similarity=0.122 Sum_probs=249.8
Q ss_pred HHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc
Q 042503 25 FLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE 100 (477)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 100 (477)
+...-.|.++.++..+|..+++-...+.|.+++++... .+..++|.+|.+-.- ..-.+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 33444567889999999999999999999999998875 566778888766433 2337899999999999999
Q ss_pred ccHHHHHHHhhccCCchh----HHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhh-HHHHhcccCC------------
Q 042503 101 YTFAPLLKACLGVGDLRV----GQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDD-GMKVFDEMSH------------ 163 (477)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------ 163 (477)
.|+|.++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |...+.++..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998875 46788899999999999999999999999888755 3333333321
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--------CC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--------RS---VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 232 (477)
.|...+..-+..|....+.+-|.++-.-... ++ ..-|..+....++....+.-..+|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 2444556667777788888888877665543 22 235667788888899999999999999998889999
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhc
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN 312 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (477)
.+...++++....+.++-.-+++..+...|. .........++..+++.+- .|+...-..+-.+.++.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-t~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH-TFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKC 500 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999988885 3333333333333333220 12222111121111111
Q ss_pred --CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH---HHHHHHHhcCCHH
Q 042503 313 --GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG---CMVDVLGRSGCVR 387 (477)
Q Consensus 313 --~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~ 387 (477)
.-.+.....-.+|.+..++ ....+.++..+.+.|..++|.++|..+.....-.|.....| .+++.-.+....-
T Consensus 501 aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1112222233445544444 44566667778899999999999998864444445555555 4455556777788
Q ss_pred HHHHHHHhc
Q 042503 388 EAYDLIRSM 396 (477)
Q Consensus 388 ~A~~~~~~~ 396 (477)
.|...++-+
T Consensus 579 qA~~~lQ~a 587 (625)
T KOG4422|consen 579 QAIEVLQLA 587 (625)
T ss_pred HHHHHHHHH
Confidence 888877776
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.7e-13 Score=118.00 Aligned_cols=356 Identities=11% Similarity=0.055 Sum_probs=195.2
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH--HHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA--PLLK 108 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~ 108 (477)
..|+..+-.....+.+.|....|+..|......-+..|.+-+...--..+ .+....+.. |.+.+..-+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~----~e~~~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD----IEILSILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch----HHHHHHHHh-cCcccchHHHHHHHHH
Confidence 44555555455556666777777777766554333333332222111111 122222221 1111111111 1223
Q ss_pred HhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCCh
Q 042503 109 ACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 182 (477)
++-.....+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+ .|..+|+.++-.--...++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444456666666666667777766665556666666677778888888877765 3445555544322222222
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 183 DKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
.---+....+.+-.+.|...+.+-|.-.++.++|..+|+..++.+ +-....|+.+.+-|....+...|...++.+++-+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 211111222223344566666666777777777777777776653 2234455666666666777777777777776666
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 339 (477)
|.+-..|-.|.++|.-.+.+.-|+-.|++..+ .|...|.+|.++|.+.++.++|++.|++....| ..+...+..
T Consensus 395 --p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 395 --PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred --chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 66666777777777777777777766666543 356667777777777777777777777766655 345566666
Q ss_pred HHHHhhccccHHHHHHHHHHhhhc---cCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 340 VLTCCAHAGLVEKARELFASMTGL---HSI-VP-NLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
|...+.+.++.++|...|++-.+. .|. .| .......|..-+.+.+++++|......
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 667776777777766666655431 111 11 112222344455555666665554443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.3e-13 Score=116.26 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=237.3
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCC
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV-VSWNLMISSLGKSGR 212 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 212 (477)
|...+-...-.+.+.|..+.|+..|......-+..|.+-+....-..+.+.+..+.......+. ..---+..++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 4333333444555667777777777666553344444443333333333333333322222111 111223455666668
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCcc-chhHHHHHHHHHHHhcCChHH-HHHH
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYR-KVVSVGNALVDFYCKCGILDT-ARNV 290 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-a~~~ 290 (477)
.+++..-.+.....|++-+...-+....+.....++++|+.+|+.+.+...+. .+..+|..++-.--...++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 88888888888888877777776777777788899999999999999987422 344455444433222222221 2222
Q ss_pred hccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh
Q 042503 291 FKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL 370 (477)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (477)
+ .+.+-.+.|...+.+-|.-.++.++|..+|++..+.+ +-....|+.+.+-|...++...|.+-++.+.+ -.|.|-
T Consensus 323 ~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~Dy 398 (559)
T KOG1155|consen 323 S-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDY 398 (559)
T ss_pred H-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhH
Confidence 2 2333345566777788888899999999999999886 55677899999999999999999999999984 236788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..|-.|.++|.-.+.+.=|+-.|++. ..+| |+..|.+|+.+|.+.++.++|+..|++++..+..+..++..|++.|.+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999 5555 568999999999999999999999999999998889999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 042503 449 GGRWDDAETLRMWMRE 464 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~ 464 (477)
.++.++|.+.+++.++
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999999998876
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=3.7e-16 Score=136.56 Aligned_cols=251 Identities=17% Similarity=0.119 Sum_probs=96.3
Q ss_pred HHHhhccCCchhHHHHHHHHHHhc-ccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCc---hHHhHHHHHHHHhcCCh
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSG-FERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD---VIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 182 (477)
...+.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+ ...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555555555554333332 22233444444445555555556655555555421 2233333333 455666
Q ss_pred HHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCcccchHHHHHHHH
Q 042503 183 DKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEATVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 183 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
++|.++++..-+ ++...+...+..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...++++.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665554432 444556666777777788888888887766432 24456666777777777888888888888888
Q ss_pred HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
+.. |.+..+...++..+...|+.+++..+++... ..|+..+..+..++...|++++|+.++++..... +.|...
T Consensus 174 ~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 174 ELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 777 7777777778888888888877666655443 3566677778888888888888888888887764 667777
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhh
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
...+..++...|+.++|.++..++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7888888888888888888777664
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.1e-13 Score=126.39 Aligned_cols=221 Identities=13% Similarity=0.010 Sum_probs=152.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchh------HHHHHHHHHH
Q 042503 205 SSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVV------SVGNALVDFY 278 (477)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 278 (477)
..+...|+++.|...++.+.+.. +-+......+...+.+.|+++.+..++..+.+....++.. .++..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554442 2233444444455555555555555555555544321111 1223334444
Q ss_pred HhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
....+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 444556666777777654 46677888889999999999999999998874 5555322 3344456699999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 356 LFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..+...+.. +.|...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+.
T Consensus 316 ~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999988433 556677888999999999999999999999 778999999999999999999999999999997654
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.2e-13 Score=115.38 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=179.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 206 SLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
.+.-.|+.-.|..-|+..+.....++. .|.-+...|....+.++....|+.+.+.+ |.++.+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence 345578889999999998887544333 27777788999999999999999999999 889999999999999999999
Q ss_pred HHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|..-|++...- ++..|-.+.-+..+.+++++++..|++.+.+ +|..+..|+.....+...++++.|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998764 3455666666667889999999999999886 577788999999999999999999999999875
Q ss_pred ccCC------CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 363 LHSI------VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 363 ~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
.... .+.+.+.-.++..- -.+++..|.+++++. .+.|.. ..+..|...-.+.|+.++|+++|++...+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2211 11122222233222 348999999999998 666755 5889999999999999999999999877653
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.4e-14 Score=128.83 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=160.0
Q ss_pred ChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCC------CChhhHHHHHHHHHhcCChhHHHHHH
Q 042503 150 QMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRE------RSVVSWNLMISSLGKSGRDSEALRLF 220 (477)
Q Consensus 150 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (477)
+..+|...|+.+.+ ++ ..+...+.++|...+++++|.++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45678888887554 23 34556778889999999999999988875 4666777777655332 233333
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC-
Q 042503 221 HE-MRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN- 298 (477)
Q Consensus 221 ~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 298 (477)
.+ +.+.. +..+.+|.++.++|.-+++.+.|++.|++..+-|
T Consensus 410 aq~Li~~~-------------------------------------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 410 AQDLIDTD-------------------------------------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred HHHHHhhC-------------------------------------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 32 33222 4455555555555555555555555555555422
Q ss_pred --ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH
Q 042503 299 --VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM 376 (477)
Q Consensus 299 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (477)
..+|+.+..-+.....+|.|...|+..+... +-+-..|-.+.-.|.+.++++.|+-.|+++.+.. +.+......+
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~ 529 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHI 529 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhh
Confidence 2445555555555566666666666655432 2233344455556666666666666666665311 3344444455
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
+..+.+.|+.++|+++++++ ...| |+..-...+..+...+++++|...++++.+.-|++...+..++..|.+.|+.+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 55666666666666666666 2222 333334444555666666777777777766667666666777777777777666
Q ss_pred HHHHHHHHHhC
Q 042503 455 AETLRMWMREN 465 (477)
Q Consensus 455 A~~~~~~~~~~ 465 (477)
|+.-|.-+.+.
T Consensus 610 Al~~f~~A~~l 620 (638)
T KOG1126|consen 610 ALLHFSWALDL 620 (638)
T ss_pred HHHhhHHHhcC
Confidence 66666555444
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.3e-14 Score=127.98 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=146.1
Q ss_pred CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH---H
Q 042503 296 RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE---H 372 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 372 (477)
+..+.+|-++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+... ..++. .
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnA 491 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNA 491 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHH
Confidence 3567899999999999999999999999999864 4478899999999999999999999999888 34444 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
|..|...|.++++++.|.-.|+++ .+.|.. .....++..+-+.|+.++|+++++++.-++|.++-.-...+..+...+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 556788999999999999999999 776654 677888888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 042503 451 RWDDAETLRMWMREN 465 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~ 465 (477)
++++|+..++++.+.
T Consensus 572 ~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 572 RYVEALQELEELKEL 586 (638)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999999875
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=4.2e-13 Score=123.45 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=166.1
Q ss_pred cCChHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcccchHH
Q 042503 179 KGDVDKGLYLFREMRE--RSV-VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE--ATVVAVLPICARLGAVDIGQW 253 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 253 (477)
.|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|..++.+..+.. |+. ..-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666655543 222 223333455556666777777666665442 332 222333555566666777777
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHH----HHHHHHHhcCCchHHHHHHHHHH
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWN----AMISGLAFNGRGELGVELYEQMI 326 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~ 326 (477)
.++.+.+.. |.++.+...+...+...|++++|.+.+..+.+. +...+. .........+..+++...+..+.
T Consensus 175 ~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 776666666 666666677777777777777777776666542 222221 11111122222333334444444
Q ss_pred HcCC---CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 327 AKGV---SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH---YGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 327 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 1366777777788888888888888888887422 33221 111112223456777777777776 334
Q ss_pred CCH---HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNA---AIWGSLLSSCRTHGHVELAEHAVK--ELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+. ....++++.+.+.|++++|.+.|+ .+.+..|+ +..+..++.++.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 456688888888888888888888 46666775 44566888888888888888888887644
No 49
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.9e-11 Score=107.68 Aligned_cols=437 Identities=13% Similarity=0.110 Sum_probs=272.4
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcch-H-HHHHHHHHhcCCCch
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLL-F-NSMIKAYSLNGPSEE 83 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~ 83 (477)
++.+...|++++|.+....++..+ +.|...+.+-+-++.+.+++++|+++.+.-....... + -.-..+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999999987 5667788888889999999999998877654311111 1 122334567899999
Q ss_pred HHHHHHHHHhCCCCC-CcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC-cchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 84 PVKLFALLKNLGIWP-DEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER-FGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 84 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
|+..++ |..+ +..+...-.+.|.+.|++++|..+|+.+.+++.+. +......++..- -...+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhc
Confidence 999988 2333 33366666788899999999999999998876542 222222222221 111121 33333
Q ss_pred CC---CchHHhHHHHHHHHhcCChHHHHHHHHhcC--------CCCh----------hhHHHHHHHHHhcCChhHHHHHH
Q 042503 162 SH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--------ERSV----------VSWNLMISSLGKSGRDSEALRLF 220 (477)
Q Consensus 162 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~~~~ 220 (477)
.. .+-..+......+...|++.+|+++++... +.|. ..--.|...+...|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33 233333344556778999999999999882 1111 12334666778899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH---HhhccCcccc--------------hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 221 HEMRDQAFELDEATVVAVLP---ICARLGAVDI--------------GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 221 ~~m~~~~~~~~~~~~~~l~~---~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
...++.. ++|........+ +.....++-. +......+.... ......-+.++.+| .+.
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q--k~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ--KQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHH--hhh
Confidence 9998875 455533332222 2222211111 111111111111 11111112333333 355
Q ss_pred hHHHHHHhccCCCCC-ceeHHHHHHHHH--hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH--
Q 042503 284 LDTARNVFKEIPRKN-VVSWNAMISGLA--FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA-- 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 358 (477)
.+.+.++...+.... ...+..++..+. +...+.++..++...-+....-.....-..+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 566766666665433 233444444333 223577788888777665322224555666777889999999999999
Q ss_pred ------HhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCH----HHHHHHHHHHHHcCChHHHHH
Q 042503 359 ------SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNA----AIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 359 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~----~~~~~l~~~~~~~~~~~~a~~ 423 (477)
.+. ..+..| .+...+...+.+.++.+.|..++.+. ...+.. .++..+...-.++|+-++|..
T Consensus 403 ~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 444 233334 45556777788888777777776665 112222 234444445567899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+++++++.+|++..+...++.+|++.. .+.|..+-+.+
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 999999999999999999999998874 66776665443
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=6.3e-13 Score=122.24 Aligned_cols=287 Identities=14% Similarity=0.036 Sum_probs=166.8
Q ss_pred ccCCchhHHHHHHHHHHhcccCcc-hHHHHHHHHHHhcCChhhHHHHhcccCC--Cch--HHhHHHHHHHHhcCChHHHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFG-SIRIGVVELYTSCGQMDDGMKVFDEMSH--RDV--IVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~ 186 (477)
..|+++.|.+.+....+.. |+. ..+.....++...|+++.|.+.+++..+ |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555554443322 222 1222333445555555555555555432 222 12222344455555566665
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCcccchHHHHHHHHHhC
Q 042503 187 YLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA-VLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 187 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
+.++.+.+ | +......+...+...|++++|...+..+.+.++. +...+.. -..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH---------------------
Confidence 55555543 2 4456667777788888888888888888777533 2222211 1100
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHH-H-H
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKA-T-F 337 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~-~ 337 (477)
+..++..-......+.....++...+ .++..+..+...+...|+.++|..++++..+.. +.+.. . .
T Consensus 232 --------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~ 302 (409)
T TIGR00540 232 --------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLP 302 (409)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhH
Confidence 01111111111122333334443332 366677777778888888888888888888763 22221 1 1
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS--M-SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~ 414 (477)
..........++.+.+.+.+++..+...-.|+......+...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1122223445777888888888875432222225666888889999999999999994 3 668999888899999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 042503 415 HGHVELAEHAVKELINL 431 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~ 431 (477)
.|+.++|.++|++.+..
T Consensus 383 ~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999987653
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=1.1e-12 Score=112.15 Aligned_cols=200 Identities=13% Similarity=0.040 Sum_probs=166.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
......+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34456667788888899999999998887654 234567778888999999999999999998875 55667788888
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
..+...|++++|...+++.......+.....+..+...+...|++++|...+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999843223334567777889999999999999999998 4344 4578888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+|...++++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999998888888999999999999999999998887653
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.7e-11 Score=104.23 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHH
Q 042503 179 KGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIH 255 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (477)
.|++.+|++...+-.+ .....|..-+.+--+.|+.+.+-+++.+..+..-.++.....+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544332 1122333333444455555555555555554422333344444445555555555555555
Q ss_pred HHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc-----------eeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 256 SYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV-----------VSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
..+.+.+ |.++.+.....++|.+.|++.....++.++.+... .+|+.+++-....+..+.-...|+.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555555 55555555566666666666666666655554211 2455555555555555555556665
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCH
Q 042503 325 MIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNA 402 (477)
Q Consensus 325 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 402 (477)
.... .+.+...-..++.-+...|+.++|.++..+.. +.+..|+.. ..-...+-++...-++..++. ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5443 24445555666667777777777777777776 354455411 112334555555555555554 222233
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+.+|+..|.+.+.+.+|...++.+++..| +...|..++.++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6677777778888888888888887777777 3777888888888888888888777776643
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=8.5e-12 Score=102.85 Aligned_cols=257 Identities=11% Similarity=0.155 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC-Cch------HHhHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH-RDV------IVRNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLG 208 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~ 208 (477)
.+|...|.+.|..|.|+++.+.+.+ ||. .....|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 3444444444555555544444433 221 1223444556666666666666666655222 24555667777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR 288 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (477)
...+|++|++.-+++.+.+-.+... .-...|..+...+....+.+.|.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~--------------------------------eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRV--------------------------------EIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchh--------------------------------HHHHHHHHHHHHHhhhhhHHHHH
Confidence 7777777777777666654333211 11222344444445555666666
Q ss_pred HHhccCCCCC---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC
Q 042503 289 NVFKEIPRKN---VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS 365 (477)
Q Consensus 289 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (477)
.++.+..+.| +..--.+.+.....|+++.|++.++...+.+..--..+...|..+|.+.|+.++....+.++.+ .
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~- 278 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T- 278 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c-
Confidence 6666655432 2333445566777788888888888877775444456667777888888888888888777764 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRS-MSIRPNAAIWGSLLSSCRT---HGHVELAEHAVKELIN 430 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 430 (477)
.+....-..+.+.-....-.+.|...+.+ ..-+|+...+..++..-.. .|...+....++.++.
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34444444444444444445555544443 3667888877777776543 2344555556666653
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.4e-12 Score=104.53 Aligned_cols=265 Identities=12% Similarity=0.077 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEA---TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|.+.|.+.|..+.|+++-..+.+..--+... ..-.+..-|...|-+|.|+.+|..+.+.+ .-...+...|+..|-
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ 152 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHH
Confidence 4444444555555555544444321111111 11123333455555555555555555544 334444466677777
Q ss_pred hcCChHHHHHHhccCCCCCcee--------HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 280 KCGILDTARNVFKEIPRKNVVS--------WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
...+|++|+++-+++.+-+... |.-+...+....+.+.|..++++..+.+ +-....-..+.+.....|+++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchH
Confidence 7777777777666555433332 3344555556789999999999998875 444555566778899999999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.|.+.++.+.+ .+..--..+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+.
T Consensus 232 ~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 232 KAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 99999999984 433334567788999999999999999999988 5566666666666666667777888888888888
Q ss_pred cCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHhCCCccCCC
Q 042503 431 LEPWNSGNYVLLSNIYA---EGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 431 ~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
..|. ...+..++..-. ..|.+.+-...++.|+..-++.+|.
T Consensus 311 r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 311 RKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 8885 667777777654 3356788888888888766666554
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3.8e-11 Score=102.13 Aligned_cols=225 Identities=16% Similarity=0.065 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc------hhHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK------VVSVGNA 273 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~ 273 (477)
+-+........|++..|..-+..+.+.+ +-+........++|.+.|++.....++..+.+.+...+ ...++..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 3334444444555555554444444432 22333444444455555555555555555554444111 1223344
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~ 310 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDP 310 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCc
Confidence 44444444555555556666653 46777778888889999999999999999888777762 223346677787
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
..-++..+......+. ++..+..|...|.+.+.+.+|...|+.. ...|+..+|+-+..++.+.|+..+|.+..++.+
T Consensus 311 ~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 311 EPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777777777644443 4467888999999999999999999987 889999999999999999999999999999887
Q ss_pred hc
Q 042503 430 NL 431 (477)
Q Consensus 430 ~~ 431 (477)
..
T Consensus 389 ~~ 390 (400)
T COG3071 389 LL 390 (400)
T ss_pred HH
Confidence 44
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=1e-10 Score=105.51 Aligned_cols=418 Identities=11% Similarity=0.048 Sum_probs=229.0
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHH
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
|-+.+.+...+...+.+++. .+.-+.+.....-.+...|+.++|........+ .+.++|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 34455566666666666663 233344444444444556777777776665554 34456666666666667777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--
Q 042503 86 KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-- 163 (477)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (477)
+.|......+ +-|...+.-+.-.-++.|+++.....-....+..+. ....|..++.++.-.|+...|..+++...+
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776643 334444554444445666666666555555553222 344555555556666666666666555432
Q ss_pred ---CchHHhHHH------HHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042503 164 ---RDVIVRNLM------IHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD 231 (477)
Q Consensus 164 ---~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 231 (477)
++...+... .....+.|..++|.+.+...... ....-..-...+.+.+++++|..++..++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~------ 247 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE------ 247 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh------
Confidence 222222211 12223344445554444443321 111122233444445555555555555544
Q ss_pred HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH-HHhccCCC--CCce-eHHHHHH
Q 042503 232 EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR-NVFKEIPR--KNVV-SWNAMIS 307 (477)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~--~~~~-~~~~l~~ 307 (477)
.+ |++...+..+..++.+-.+.-++. .+|....+ |... .-..=+.
T Consensus 248 -----------------------------rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 248 -----------------------------RN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred -----------------------------hC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 43 444444444444443222222222 33333322 0000 0000011
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH-HHHHHHHhhhccC----------CCCChHHH--H
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK-ARELFASMTGLHS----------IVPNLEHY--G 374 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~----------~~~~~~~~--~ 374 (477)
......-.+..-.++..+.+.|+++-...+..+-.-=.+..-.++ +..+...+. ..| -+|....| -
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHH
Confidence 111122233455677778888877644444433321111111111 122222221 111 14554444 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.++..|-+.|+++.|..+++.. +..|+. ..|..-.+.+...|++++|..+++++.+++-.|..+-...+....++++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 5788899999999999999998 777776 56767778899999999999999999999977777777888999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 042503 453 DDAETLRMWMRENNV 467 (477)
Q Consensus 453 ~~A~~~~~~~~~~~~ 467 (477)
++|.++....-..|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999988877664
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=2.2e-10 Score=103.17 Aligned_cols=251 Identities=15% Similarity=0.178 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch---hHHHHHHHHHHHh
Q 042503 210 SGRDSEALRLFHEMRDQAFELD------EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV---VSVGNALVDFYCK 280 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 280 (477)
.|+..+....|.+..+. +.|- ...|..+...|-..|+++.|..+|+++.+... +.- ..+|..-..+-.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-KTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-cchHHHHHHHHHHHHHHHh
Confidence 44455555555555443 2221 12355555666666666666666666665543 222 4455555566666
Q ss_pred cCChHHHHHHhccCCC-C--------------------CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC---------
Q 042503 281 CGILDTARNVFKEIPR-K--------------------NVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--------- 330 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--------- 330 (477)
..+++.|+++.++... | +...|...++..-..|-++....+|+++++..+
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6666666666655431 0 112344444433334444444444444443321
Q ss_pred -------------------------CCCH-HHHHHHHHHhhc---cccHHHHHHHHHHhhhccCCCCChH--HHHHHHHH
Q 042503 331 -------------------------SPNK-ATFVGVLTCCAH---AGLVEKARELFASMTGLHSIVPNLE--HYGCMVDV 379 (477)
Q Consensus 331 -------------------------~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~ 379 (477)
.|+. ..|+..+..+.+ ...++.|..+|++..+ +.+|... .|-.....
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 2222 223333333222 2346666666666662 4444322 12112222
Q ss_pred HHhcCCHHHHHHHHHhc--CCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCch
Q 042503 380 LGRSGCVREAYDLIRSM--SIRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS--GNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~ 453 (477)
--+.|-...|+.++++. ++++.. ..|+..|.-....=-+..-..+|+++++.-|++. ......+..-.+.|..+
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 22345566666666666 333322 3445444433333334445566666666655432 23334455566677777
Q ss_pred HHHHHHHHHHh
Q 042503 454 DAETLRMWMRE 464 (477)
Q Consensus 454 ~A~~~~~~~~~ 464 (477)
.|..++.--.+
T Consensus 676 RARaIya~~sq 686 (835)
T KOG2047|consen 676 RARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhhhh
Confidence 77776654433
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-10 Score=106.33 Aligned_cols=427 Identities=14% Similarity=0.091 Sum_probs=236.8
Q ss_pred hcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC-CcccHH
Q 042503 29 KLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP-DEYTFA 104 (477)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~ 104 (477)
.+.-|+.+|..+--++...|+++.+.+.|++... .....|+.+...+...|....|+.+++.-....-.| +...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445778888888888888999998888887765 455678888888888888888888888765532223 334444
Q ss_pred HHHHHhh-ccCCchhHHHHHHHHHHhc--cc--CcchHHHHHHHHHHhcC-----------ChhhHHHHhcccCC---Cc
Q 042503 105 PLLKACL-GVGDLRVGQCVHGEIIRSG--FE--RFGSIRIGVVELYTSCG-----------QMDDGMKVFDEMSH---RD 165 (477)
Q Consensus 105 ~l~~~~~-~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~---~~ 165 (477)
..-+.|. +.+..+++...-.+++... .. .....|..+.-+|...- ...++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445554 3466677776666665521 11 12233333333333211 12233444444432 12
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 241 (477)
..+...+.--|+..++++.|.+...+..+ .+...|..++..+...+++.+|+.+.+.....- .-|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 22222222233444455555444444332 234445555555555555555555554433320 1111111111111
Q ss_pred hhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC---C---CCceeHHHHHHHHHhcC--
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---R---KNVVSWNAMISGLAFNG-- 313 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---~~~~~~~~l~~~~~~~~-- 313 (477)
-...++.+.+......+...- .....+ ...++-....+....+. . ..+.++..+..-....+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w--e~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW--EAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH--HhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 112233333322222222111 000000 00011111111111111 0 01122222222111111
Q ss_pred -CchHHHHHHHHHHHcCCC--CC------HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 314 -RGELGVELYEQMIAKGVS--PN------KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 314 -~~~~a~~~~~~m~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
.++.. +...-+. |+ ...|......+.+.+..++|...+.+... ..+-....|......+...|
T Consensus 627 ~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 627 AGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred cccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 11111 1111111 22 22344556677888899999988888873 33566778888888999999
Q ss_pred CHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 385 CVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEH--AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.+++|.+.|... .+.|+. .+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999999888 667765 788999999999999888888 9999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCCCcc
Q 042503 461 WMRENNVKKSPGQSL 475 (477)
Q Consensus 461 ~~~~~~~~~~~~~s~ 475 (477)
...+.. +.+|..+|
T Consensus 779 aa~qLe-~S~PV~pF 792 (799)
T KOG4162|consen 779 AALQLE-ESNPVLPF 792 (799)
T ss_pred HHHhhc-cCCCcccc
Confidence 887653 33444444
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.5e-10 Score=95.53 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
-.++..++.-..++++++.+++.....-...|.+.| .+..+.+..|.+.+|+++|-.+.. ..++.+..-...|.++|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHH
Confidence 334444444555666666666666654333333333 456677778888888888877762 333333333355677888
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 382 RSGCVREAYDLIRSMSIRPNAAI-WGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+.+.++-|+.++-++..+.+..+ +..+..-|.+.+.+--|.+.|+.+..++|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888753334433 344456788888888888888888877764
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.9e-10 Score=95.76 Aligned_cols=275 Identities=10% Similarity=0.011 Sum_probs=210.3
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVS---WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
.++.....+..++...|+.++|+..|++...-|+.+ .......+.+.|+++....+...+.... +-+...|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 567778888899999999999999999877544433 2233445567888888888877776542 223333434444
Q ss_pred HhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchH
Q 042503 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGEL 317 (477)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 317 (477)
.....+++..|..+-++..+.+ +.+...+-.-...+...|++++|.-.|+.... -+..+|.-++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 4556778888888888888887 77777777778888999999999999987653 367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHhh-ccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVL-TCCA-HAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
|...-+..... ++.+..++..+. .+|. ....-++|.+++++... ..|+ ....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776654 356677776663 3333 33445788898888763 2344 4567778888999999999999999
Q ss_pred hc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 395 SM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 395 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+. ...||....+.|...+...+.+++|.+.|..+++++|.+..+...|=..
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 98 7789999999999999999999999999999999999887766555433
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=9.9e-12 Score=118.81 Aligned_cols=261 Identities=13% Similarity=0.002 Sum_probs=188.9
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh---------ccCcccchHHHHHHHHH
Q 042503 196 SVVSWNLMISSLGK-----SGRDSEALRLFHEMRDQAFELD-EATVVAVLPICA---------RLGAVDIGQWIHSYAES 260 (477)
Q Consensus 196 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 260 (477)
+...|...+.+... .+.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455555554322 23467899999998875 454 334444444332 23457889999999999
Q ss_pred hCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 261 SGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
.+ |.+..++..+...+...|++++|...|++..+ | +...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~ 409 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAG 409 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhH
Confidence 98 88888999999999999999999999998775 3 34578888889999999999999999999875 3333334
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRT 414 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 414 (477)
..++..+...|++++|...++++.+ .. +| +...+..+..++...|+.++|...++++ ...|+.. ..+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 4445556678999999999999873 22 34 4555777888999999999999999988 4455544 44555556666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.| +.|...++++.+..-..+.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788888887765433333334477778888888888777 8887765
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=5.7e-12 Score=104.00 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
+.+.++|.+.|.+.+|...++..++. .|-+.||..+.+.|.+..++..|..++.+-.+.- |.++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence 56777888888888888888777765 5666677777777777777777777777777665 6666666666777777
Q ss_pred cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.++.++|.++++...+ .++.....+...|.-.++++-|+++|+++.+.|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776655 2444455555566667777777778877777773 36667777777777777777777777
Q ss_pred HHhhhccCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 358 ASMTGLHSIVPN--LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 358 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
++... .--.|+ ..+|-.+....+..|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|..++..+.+..|
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 77663 222233 245555555556666666666666555 2222 335566665555566666666666666665555
Q ss_pred C
Q 042503 434 W 434 (477)
Q Consensus 434 ~ 434 (477)
+
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 4
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=1.1e-08 Score=92.64 Aligned_cols=434 Identities=12% Similarity=0.128 Sum_probs=268.2
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC------------------------
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN------------------------ 62 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------ 62 (477)
+-....+-++-+..+++..++.. |...+-.+..+++.+++++|.+.+.....
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 33344555556666666665553 33355666777777888887777665542
Q ss_pred ----------------------CC--cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc-----
Q 042503 63 ----------------------PS--VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV----- 113 (477)
Q Consensus 63 ----------------------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 113 (477)
+| -..|.+|.+-|.+.|.+++|.++|++.... ..+..-|..+..+|+.-
T Consensus 222 ~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHH
Confidence 11 124777888888888888888888877663 23444444444443321
Q ss_pred -----------CC------chhHHHHHHHHHHhcc-----------cCcchHHHHHHHHHHhcCChhhHHHHhcccCC--
Q 042503 114 -----------GD------LRVGQCVHGEIIRSGF-----------ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-- 163 (477)
Q Consensus 114 -----------~~------~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (477)
++ ++-....|+.+...++ +-++..|..-+.. ..|+..+-...|.+...
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc
Confidence 11 1222233333333221 1122233332222 23444444444444332
Q ss_pred -------CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 042503 164 -------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV-------VSWNLMISSLGKSGRDSEALRLFHEMRDQAFE 229 (477)
Q Consensus 164 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 229 (477)
.-...|..+.+.|-..|+++.|..+|++..+-+- .+|......-.+..+++.|+.+++......-+
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 2234678888999999999999999999887322 25555666666788899999988876543211
Q ss_pred C-----------------CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhc
Q 042503 230 L-----------------DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK 292 (477)
Q Consensus 230 ~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (477)
| +...|...++.--..|-++....+++.+.+..+ .++.+.......+-.+.-++++.++++
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 112344444555566888889999999999985 344444556666777888999999999
Q ss_pred cCCC----CCc-eeHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccccHHHHHHHHHHhhh
Q 042503 293 EIPR----KNV-VSWNAMISGLAF---NGRGELGVELYEQMIAKGVSPNKATFVGVLTC--CAHAGLVEKARELFASMTG 362 (477)
Q Consensus 293 ~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 362 (477)
+-.. |++ ..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+.+ -.+.|-...|+.+++++.
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat- 613 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT- 613 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 8765 444 467777766654 2468899999999998 777765433333322 234578889999999987
Q ss_pred ccCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 042503 363 LHSIVPN--LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGS---LLSSCRTHGHVELAEHAVKELINLEPW-- 434 (477)
Q Consensus 363 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~p~-- 434 (477)
.++++. ...||..|.--...=-+.....+|++. ..-|+...-.. ....-.+.|..++|..+|...-+.-++
T Consensus 614 -~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 614 -SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 334443 356777776554444445555666666 44455543332 233446788999999999888776643
Q ss_pred CCchHHHHHHHHHhcCCch
Q 042503 435 NSGNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~ 453 (477)
++..|...=..-.+.|+-+
T Consensus 693 ~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred ChHHHHHHHHHHHhcCCHH
Confidence 3556777777778888833
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-10 Score=103.30 Aligned_cols=280 Identities=13% Similarity=0.037 Sum_probs=210.1
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
.+.........-+...+++.+..++++...+. ....+..-|..+...|+..+-.-+=..+.+. .|-.+.+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444455556666777888888888777663 3344555566777778777777776777665 2445667777777
Q ss_pred HhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchH
Q 042503 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGEL 317 (477)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 317 (477)
-|...|...+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+....+ + .-.-+--+..-|.+.++.+-
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 7777788888888888888777 77778888999999999999999888776554 1 11223334455778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---C--CCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH---S--IVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+...+.- + ...-..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988764 6677778888777788899999999998876211 0 011345688899999999999999999
Q ss_pred HHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 393 IRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 393 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
+++. -.+.+..++.+++-.|...|+++.|.+.|.+++-+.|++..+-..|..+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9998 445677899999999999999999999999999999988766666665543
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.4e-11 Score=116.18 Aligned_cols=212 Identities=13% Similarity=-0.009 Sum_probs=170.7
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh---------cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcC
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK---------CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNG 313 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 313 (477)
++.+.|...++++.+.. |.+...+..+..++.. .+++++|...+++..+ .+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45678999999999888 7778787777766553 2447899999998876 35567888888889999
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
++++|...+++..+.+ +.+...+..+..++...|++++|...++++.+.. |+ ...+..++..+...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999986 6677888889999999999999999999998533 33 23333445556778999999999
Q ss_pred HHhc--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 393 IRSM--SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 393 ~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++. ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9988 22454 4557778888899999999999999998888888888888888888888 4888888887653
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=8.4e-12 Score=103.01 Aligned_cols=224 Identities=13% Similarity=0.015 Sum_probs=193.8
Q ss_pred HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhc
Q 042503 236 VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFN 312 (477)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 312 (477)
..+.++|.+.|.+..|++.++...+. .+.+.+|..|...|.+..++..|+.+|.+..+ | |+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 46778999999999999999998887 45677788899999999999999999998876 4 333344566778888
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+++++. ..|. .++..|+.+..+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998875 6677777777888888999999999999999 4664 5788999999999999999999999
Q ss_pred HHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 393 IRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 393 ~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|++. --.|+ ..+|..+.......||+..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9888 22343 4689999999999999999999999999999999999999999999999999999999887654
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=7.6e-11 Score=109.89 Aligned_cols=272 Identities=13% Similarity=0.083 Sum_probs=159.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCc
Q 042503 86 KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD 165 (477)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (477)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888988888888888888888 8888887777778888888888888888877665 577
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhc
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR-DQAFELDEATVVAVLPICAR 244 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~ 244 (477)
..+|+.|..+|...||+.. .+..++ ....+...+...|--.....++..+. ..+.-||..+. +.....
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~ 151 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVL 151 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHH
Confidence 7888888888888888765 222211 11122233333443333333333221 11223333221 111122
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-CChHHHHHHhccCCC-CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC-GILDTARNVFKEIPR-KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.|.++.+.+++..+.......|... +++-.... ..+++-....+...+ +++.+|.+.+.+-...|+.+.|..++
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2333333333322221111011000 11111111 112222222222222 67777777777777777777777778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
.+|.+.|++.+.+.|..|+-+ .++...++.++..|. ..|+.|+..|+...+..+.+.|
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcch
Confidence 888777777777776666644 666777777777777 4777777777766555555433
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=1e-09 Score=102.61 Aligned_cols=424 Identities=14% Similarity=0.074 Sum_probs=237.8
Q ss_pred HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCC
Q 042503 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (477)
..+..+...|+.|+-.+|..+|..|+..|+.+.|- +|.-|.- .+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56778889999999999999999999999999998 8887754 45567899999988888887775
Q ss_pred CCCCcccHHHHHHHhhccCCchh---HHHHHHHHHH----hcccC--------------cchHHHHHHHHHHhcCChhhH
Q 042503 96 IWPDEYTFAPLLKACLGVGDLRV---GQCVHGEIIR----SGFER--------------FGSIRIGVVELYTSCGQMDDG 154 (477)
Q Consensus 96 ~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~--------------~~~~~~~l~~~~~~~g~~~~A 154 (477)
.|...||..|..+|...||... +++.+..+.. .|... ....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998754 3332222222 22110 011112234444556667777
Q ss_pred HHHhcccCC--CchHHhHHHHHHHHh-cCChHHHHHHHHhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042503 155 MKVFDEMSH--RDVIVRNLMIHGFCK-KGDVDKGLYLFREMRE-RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL 230 (477)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 230 (477)
.+++..++. .+. ....+++-... ...+++-..+...... +++.+|..++..-...|+.+.|..++.+|.+.|++.
T Consensus 159 lkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 777766543 000 00001222211 2223333333333333 666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-----------------------------
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC----------------------------- 281 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------- 281 (477)
+...|-.++-+ .++...++.+++-|...|+ .|+..++...+..+.++
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 66555554433 5555555555555555555 44433333322222222
Q ss_pred -----------------------------------------CChHHHHHHhccCCCC-------CceeHHHHHHHHHhcC
Q 042503 282 -----------------------------------------GILDTARNVFKEIPRK-------NVVSWNAMISGLAFNG 313 (477)
Q Consensus 282 -----------------------------------------~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~ 313 (477)
|.-++.+.+-..+..| ++..|..++.-|.+.-
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 2222222222211111 1112222222211110
Q ss_pred ----------------------CchHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHH
Q 042503 314 ----------------------RGELGVELYEQMIAKGVSPNKA----------------------------TFVGVLTC 343 (477)
Q Consensus 314 ----------------------~~~~a~~~~~~m~~~~~~~~~~----------------------------~~~~l~~~ 343 (477)
...+..++... ..||.. .-+.++..
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 00000000000 011111 11222233
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCCh
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~ 418 (477)
|++.-+..+++..-++.. ..-+ ...|..|++-+......+.|..+.++. ...-|...+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 333333333333222222 1111 145777888888888888888888887 2334555677777888888888
Q ss_pred HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 419 ELAEHAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 419 ~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
..+..+++++.+.- |....++..+.......|+.+.-.++.+-+...|+.-
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888888887633 3334456667777778888888888888888777665
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=3.8e-10 Score=103.05 Aligned_cols=230 Identities=18% Similarity=0.184 Sum_probs=163.7
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHh-------CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C-
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESS-------GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K- 297 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~- 297 (477)
.++..+...|...|+++.|..+++.+.+. .. +.-....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666666666666666655544 21 22333334577788888888888888877653 1
Q ss_pred C---ceeHHHHHHHHHhcCCchHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhhccccHHHHHHHHHHhhhccC--
Q 042503 298 N---VVSWNAMISGLAFNGRGELGVELYEQMIAK-----GV-SPNK-ATFVGVLTCCAHAGLVEKARELFASMTGLHS-- 365 (477)
Q Consensus 298 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 365 (477)
+ ..+++.|..+|.+.|++++|..++++..+. |. .|.. ..++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 246777777888899988888888776542 21 2222 2356677788899999999999987754222
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 366 IVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 366 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
+.++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 357899999999999999999999887 11232 357788999999999999999999988653
Q ss_pred ----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 432 ----EPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 432 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+|++ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4468899999999999999999998886
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=3.3e-11 Score=94.86 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 348 (477)
..|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|..+.|.+-|++..+.. +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3445555555555555555555554322 344445555555555555555555555543 334444555555555555
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVK 426 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 426 (477)
.+++|...|++.........-..+|..+.-+..+.|+++.|...|++. ...|+ +.+...+.....+.|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555555532222223345555555555555555555555554 22222 2344455555555555555555555
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 427 ELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.....+...+.....++.-.+.|+.+.|-++=.++
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555544444555555555555555555554443333
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.2e-10 Score=99.49 Aligned_cols=199 Identities=15% Similarity=0.072 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~-------- 100 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGD-------- 100 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHH--------
Confidence 455666666677777777777776665542 2223344444444455555555555555554443 33333
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
.+..+...+...|++++|...+++...... +.....+..+..++...|++++|...
T Consensus 101 -----------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 101 -----------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445555555666666666666554321 12233455556666677777777777
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
+++..+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|+.+.|..+.+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7776632 1334456666677777777777777777766 22 2344555566666667777777777766665543
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.4e-09 Score=99.38 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=121.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC----------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 171 LMIHGFCKKGDVDKGLYLFREMRE----------R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
.+...|...+++.+|..+|+++.. | -..+++.|..+|.+.|++++|..+++...+-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 345566666666666666666543 1 2246777888889999999888888776532
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHH
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
++....... +.-......+...+...+++++|..++.. +.
T Consensus 313 ---------------~~~~~~~~~-~~v~~~l~~~~~~~~~~~~~Eea~~l~q~------------------------al 352 (508)
T KOG1840|consen 313 ---------------YEKLLGASH-PEVAAQLSELAAILQSMNEYEEAKKLLQK------------------------AL 352 (508)
T ss_pred ---------------HHHhhccCh-HHHHHHHHHHHHHHHHhcchhHHHHHHHH------------------------HH
Confidence 111000000 22222233444444555555555444331 22
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc----C-CCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH----S-IVP-NLEHYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+++.......-+.-..+++.+...|.+.|++++|.++++++.... + ..+ ....++.|...|.+.++..+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 222211111101123466777777777777777777777665311 1 111 1345667777777778877777777
Q ss_pred Hhc--------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 394 RSM--------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 394 ~~~--------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+. ...|+. .+|..|...|...|+++.|.++.+.+.+
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 766 234554 5788899999999999999998888864
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.1e-10 Score=91.11 Aligned_cols=414 Identities=11% Similarity=0.069 Sum_probs=254.8
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH-HHHhh
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL-LKACL 111 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~ 111 (477)
-+.+.+..+.+..++++|++++..-.+ | +....+.|..+|....++..|.+.++++.. ..|...-|... .+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 456667777888889999998876554 3 556778888888999999999999999877 35666655543 35556
Q ss_pred ccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcCChHHHHHHHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKGDVDKGLYLFR 190 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (477)
+.+.+..|..+...|.... ..-......-.......+++..+..++++... .+..+.+.......+.|+++.|.+-|+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7788888888887775420 00011111112234567889999999999884 666666666777778999999999998
Q ss_pred hcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 191 EMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 191 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
...+ .....||.-+ +..+.|+++.|++...++.+.|++-.+..=.-+..--.....+.....+.. ..
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~--------Sa 239 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ--------SA 239 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH--------HH
Confidence 8876 3345666544 556778899999999999888865332210000000000000001111111 11
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
-...++.-...+.+.|+++.|.+.+-.|+. -|++|...+.-. -..+++.+..+-+.-+...+ |....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 223334455567788999999999999975 366665554321 23456777777777777765 45677899999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCC-
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVREAYDLIRSMSIRPN--AAIWGSLLSSCRTHGH- 417 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~- 417 (477)
-.||+..-++.|-+++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+..... ......-+..-...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd 396 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDD 396 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 999999999999998865432111112333444 334443 34467777766665510000 0011111111111122
Q ss_pred --hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 418 --VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 418 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
...+++-|++.+++. .......++.|++..++..+.++|..-.+-..
T Consensus 397 ~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 122334444444443 12566778889999999999999988776543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-08 Score=87.38 Aligned_cols=284 Identities=10% Similarity=-0.036 Sum_probs=213.3
Q ss_pred HHHhcCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcc
Q 042503 175 GFCKKGDVDKGLYLFREMR-----ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT-VVAVLPICARLGAV 248 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~ 248 (477)
+.+-.++...|.+.+-.+. ..|+.....+...+...|+.++|+..|+..+.. .|+..+ .....-.+.+.|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 3444555555555544333 257778899999999999999999999987654 343222 12222334677888
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+....+...+.... ..+...|..-+......++++.|+.+-++..+.++ ..|-.-...+...|++++|.-.|+..
T Consensus 283 e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 88888777776655 34444455556666778899999999998876544 34444456788899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH-HHHH-hcCCHHHHHHHHHhc-CCCCCH
Q 042503 326 IAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV-DVLG-RSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
+... |-+...|..|+.+|...|.+.+|...-..... -++.+..+...+. ..+. ....-++|.+++++. .+.|+.
T Consensus 361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 8764 56789999999999999999999888777663 2355666665553 3332 333568899999988 778876
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 -AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+.+...|...|..+.++.++++.+...|+ ......|++.+...+.+++|...|...+..+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56778888899999999999999999999995 7789999999999999999999998887764
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.4e-08 Score=94.17 Aligned_cols=426 Identities=13% Similarity=0.118 Sum_probs=224.1
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHH-HHHHHHhc-----
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNS-MIKAYSLN----- 78 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~----- 78 (477)
..+...|++++|+..++.-.+. +.............+.+.|+.++|..+|..+.+ |+-..|.. +..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3455667777777666553333 233445566666777777777777777776665 43333333 33333111
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCch-hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHH
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLR-VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKV 157 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (477)
.+.+...++|+++... -|...+...+.-.+.....+. .+...+..+++.|++ .++..|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2344555666666553 244444444433333322232 334444555555543 2444444444433322222222
Q ss_pred hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC-CCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HH
Q 042503 158 FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR-ERSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAFELD-EA 233 (477)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 233 (477)
+..... .....+.+.... ..-. .|... ++..+...|-..|++++|+.++++.+.. .|+ +.
T Consensus 166 ~~~~~~-----------~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 166 VEEYVN-----------SLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHH-----------hhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 222110 000000000000 0000 12332 3455667777888888888888887776 344 55
Q ss_pred HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce----------eH-
Q 042503 234 TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV----------SW- 302 (477)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~- 302 (477)
.|..-.+.+-..|++.+|....+.+...+ ..+..+-+..+..+.+.|+.++|..++....+++.. .|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 67777778888888888888888888877 666677677788888888888888888777665421 12
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHc--CC---CCCHH----------HHHHHHHHhhccc-------cHHHHHHHHHH
Q 042503 303 -NAMISGLAFNGRGELGVELYEQMIAK--GV---SPNKA----------TFVGVLTCCAHAG-------LVEKARELFAS 359 (477)
Q Consensus 303 -~~l~~~~~~~~~~~~a~~~~~~m~~~--~~---~~~~~----------~~~~l~~~~~~~~-------~~~~a~~~~~~ 359 (477)
.....+|.+.|++..|++-|....+. .+ +.|-+ +|..+++..-+.. -...|.+++-.
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~ 387 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLE 387 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 23456778888888887776665442 11 22222 2333332221111 12344555555
Q ss_pred hhhccCCCC-----------ChHHHHHHHHHH---HhcCCHHHHHHHHH-----------hc------CCCCCHHHHHHH
Q 042503 360 MTGLHSIVP-----------NLEHYGCMVDVL---GRSGCVREAYDLIR-----------SM------SIRPNAAIWGSL 408 (477)
Q Consensus 360 ~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~l 408 (477)
+........ +..--..+..-. .+...-+++.+.-. +. ...||+ .
T Consensus 388 l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~ 462 (517)
T PF12569_consen 388 LHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----L 462 (517)
T ss_pred HhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----c
Confidence 442110000 000000111000 11111112211110 00 112222 1
Q ss_pred HHHHHH-cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 409 LSSCRT-HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 409 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+.-+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 222223 33578899999999999999999999999999999999999887754
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=2.5e-12 Score=78.74 Aligned_cols=50 Identities=38% Similarity=0.664 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG 112 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 112 (477)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988764
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=6.6e-12 Score=76.83 Aligned_cols=50 Identities=32% Similarity=0.471 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR 244 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 244 (477)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=2.8e-10 Score=99.69 Aligned_cols=234 Identities=12% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC
Q 042503 206 SLGKSGRDSEALRLFHEMRDQA-FELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG 282 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (477)
.....+..+.++..+.+++... ..|+ ...|......+...|+.+.|...|+.+.+.. |.++.+|..+...+...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCC
Confidence 3444566778888888877542 2222 3456667777888899999999999998887 788889999999999999
Q ss_pred ChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHH
Q 042503 283 ILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359 (477)
Q Consensus 283 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (477)
++++|...|++..+ | +..+|..+..++...|++++|...+++..+.. +.+. ........+...++.++|...|.+
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999988865 3 34677778888888999999999999988764 2232 122222234456788999999976
Q ss_pred hhhccCCCCChHHHHHHHHHHHhcCCHHH--HHHHHHhc-CC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVRE--AYDLIRSM-SI----RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.... .+|+...+ .+. ....|+..+ +.+.+.+. .. .| ....|..++..+.+.|++++|+..|+++++.
T Consensus 191 ~~~~--~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5521 23332222 222 233444433 33333322 11 11 2357888889999999999999999999999
Q ss_pred CCC-CCchHHHHHHHHHh
Q 042503 432 EPW-NSGNYVLLSNIYAE 448 (477)
Q Consensus 432 ~p~-~~~~~~~l~~~~~~ 448 (477)
+|. .......++.....
T Consensus 266 ~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 266 NVYNFVEHRYALLELALL 283 (296)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 864 34444444444433
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=1.4e-09 Score=95.39 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
..|..+...|...|+.++|...|++..+ .++..|+.+...+...|++++|...|++..+.. +.+..++..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344455555555555555555554443 233445555555555555555555555555443 223444555555555
Q ss_pred ccccHHHHHHHHHHhh
Q 042503 346 HAGLVEKARELFASMT 361 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~ 361 (477)
..|++++|.+.|+...
T Consensus 144 ~~g~~~eA~~~~~~al 159 (296)
T PRK11189 144 YGGRYELAQDDLLAFY 159 (296)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555554
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=1.5e-08 Score=91.94 Aligned_cols=381 Identities=13% Similarity=0.069 Sum_probs=220.8
Q ss_pred hcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 77 LNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
..+++...++..+.+.+ +.+-...|.....-.+...|+.++|....+..++..+. +...|+.+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34455555555555554 22333444444444444556666666665555554333 44555555555555566666666
Q ss_pred HhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 042503 157 VFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FE 229 (477)
Q Consensus 157 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~ 229 (477)
.|..... .|...|.-+.-.-.+.++++.....-....+ ..-..|..++.++.-.|++..|..++++..+.. -.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665443 3344444444344445555554444444333 233467777788888888888988888887664 24
Q ss_pred CCHHHHHHHH------HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCcee
Q 042503 230 LDEATVVAVL------PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVS 301 (477)
Q Consensus 230 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 301 (477)
|+...+.... ......|..+.|.+.+......- -+....-..-...+.+.+++++|..++..+.. ||...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 6655554322 23456677777777766555443 33444445667888899999999999999887 44444
Q ss_pred HHHHHH-HHHhcCCchHHH-HHHHHHHHcCCCCCHHHHHHHHHHhhcccc-HHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 302 WNAMIS-GLAFNGRGELGV-ELYEQMIAKGVSPNKATFVGVLTCCAHAGL-VEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 302 ~~~l~~-~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
|..... ++.+-.+.-++. .+|....+. .|....-..+-........ .+..-.++.... +.|+++-... +..
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~vf~d---l~S 328 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPSVFKD---LRS 328 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCchhhh---hHH
Confidence 544443 333333444444 666666543 2222111111111122222 233444555555 4666553332 333
Q ss_pred HHHhcCCHHHH----HHHHHhc-C------------CCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 379 VLGRSGCVREA----YDLIRSM-S------------IRPNAAIW--GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 379 ~~~~~g~~~~A----~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
.|-.....+-- ..+...+ + -+|....| ..++..+-..|+++.|...++.+++..|.-++.|
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 33222211111 1111111 1 14555444 4456678889999999999999999999988899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 440 VLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
..=++++...|++++|..++++..+.+.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999999987653
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.9e-09 Score=99.81 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---c----------CCCCCh--HHHHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL---H----------SIVPNL--EHYGCMVDVLG 381 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----------~~~~~~--~~~~~l~~~~~ 381 (477)
.+..++..+..+|+|+ +|+.+-..|.......-...++...... . .-+|+. .++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556777788888665 4455555555555555555555554321 1 113444 34466788899
Q ss_pred hcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 382 RSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
..|++++|++++++. ...|+ +..|..-++.+-+.|++++|.+.++.+.++++.|..+-+-.+..+.+.|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988 66777 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 042503 460 MWMRENNV 467 (477)
Q Consensus 460 ~~~~~~~~ 467 (477)
...-..+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877665
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.6e-08 Score=84.94 Aligned_cols=413 Identities=10% Similarity=-0.001 Sum_probs=256.9
Q ss_pred HHHHhhcCChhHHHHHhccCCCCC----cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCc
Q 042503 41 VSVCGTLNEIKYATKIFNQMRNPS----VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDL 116 (477)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 116 (477)
+.-+....++..|+.+++--...+ ..+-..+...+.+.|++++|...+..+.... .|+...+..+.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445566788999999987554311 1233345667788999999999999888765 56666666676666677888
Q ss_pred hhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC--
Q 042503 117 RVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-- 194 (477)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 194 (477)
.+|.++-... +.++-.-..+...-.+.|+-++-..+-+.+.+.. ..--++.......-.+++|++++.++..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888776543 2133333445566667788777777666665422 2334555666667788999999999886
Q ss_pred CChhhHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcc--Ccccch------------HHHHHHH
Q 042503 195 RSVVSWNL-MISSLGKSGRDSEALRLFHEMRDQAFELDE-ATVVAVLPICARL--GAVDIG------------QWIHSYA 258 (477)
Q Consensus 195 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~--~~~~~a------------~~~~~~~ 258 (477)
|+....|. +.-.|.+..-++-+..+++-..+. -||. ...+..+....+. |+.... ....+.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 44445554 345667777788888888877765 3443 3333332222222 221111 1122222
Q ss_pred HHhCCc----------------cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCC-------c
Q 042503 259 ESSGLY----------------RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGR-------G 315 (477)
Q Consensus 259 ~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 315 (477)
.+++.. ..-+.+...|+-.|.+.++..+|..+.+++....+.-|-.-.-.++..|+ .
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 222210 11123334566778889999999999988876555444433333444443 3
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 316 ELGVELYEQMIAKGVSPN-KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
.-|...|+-.-+.+..-| ...-.++..++.-..++++.+..+..+. ..-...|...+ .+..+++..|++.+|.++|-
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 334444444433333322 2234456667777788999999999988 35444454444 47889999999999999998
Q ss_pred hc-CCC-CCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 395 SM-SIR-PNAAIWG-SLLSSCRTHGHVELAEHAVKELINLE-PWN-SGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 395 ~~-~~~-p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
.. +.+ .|..+|. .+.++|.+.|.++.|-+++ ++.+ |.+ ....-..+..+.+.+.+=-|.+.|+.+...+.
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88 222 3445554 4567788899998886554 4444 332 23444566778899998888888888876543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=1.5e-09 Score=85.69 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..... +.+..+.|...-.++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 3445556666666666666666666654 4455566666666666666666666666666321 444556666666666
Q ss_pred hcCCHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 042503 382 RSGCVREAYDLIRSMSIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
..|++++|...|++.-..| -..+|..++.+..+.|+.+.|...|++.++.+|+.+.....++....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 6667777766666662122 134666666666666677777777777766666666666666666666677766666
Q ss_pred HHHHHHhCC
Q 042503 458 LRMWMRENN 466 (477)
Q Consensus 458 ~~~~~~~~~ 466 (477)
+++.....+
T Consensus 195 ~~~~~~~~~ 203 (250)
T COG3063 195 YLERYQQRG 203 (250)
T ss_pred HHHHHHhcc
Confidence 666665554
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=7.7e-11 Score=101.48 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=67.4
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH----hcCCH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG----RSGCV 386 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~ 386 (477)
..|++++|+++++.. .+.......+.++.+.++++.|.+.++.|.+ . ..|. +...+..++. ..+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 344455554444321 2333444445555555555555555555552 1 1222 2222222221 22345
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 042503 387 REAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW-DDAETLRMWMR 463 (477)
Q Consensus 387 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 463 (477)
.+|..+|+++ ...+++.+.+.++.++...|++++|.++++++++.+|.++.+...++-+....|+. +.+.+++.++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5556566555 33345555555555555666666666666666555565555555555555555555 34444555544
Q ss_pred h
Q 042503 464 E 464 (477)
Q Consensus 464 ~ 464 (477)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.5e-08 Score=87.04 Aligned_cols=413 Identities=11% Similarity=0.017 Sum_probs=232.2
Q ss_pred HhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CC-cchHHHHHHHHHhcCCCchH
Q 042503 8 LLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PS-VLLFNSMIKAYSLNGPSEEP 84 (477)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 84 (477)
+.-..|+++.|...|...+..++ ++-..|..-..+|++.|++++|.+=-.+-++ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34466788888888887777763 3677777777788888888877765555444 33 34677777777778888888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHH-----HHHHhcCChhhHHHHhc
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVV-----ELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~ 159 (477)
+.-|.+-++.. +-+...+.-+..+.... . .+.+.|. ++..+..+. +.+...-.+..-++.+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 88887777643 22344444455544100 0 0000000 111111111 11111111111111111
Q ss_pred ccCCCchHH---hHHHHHHHHhcCChH-HHHHHH------------HhcCC--C-------------ChhhHHHHHHHHH
Q 042503 160 EMSHRDVIV---RNLMIHGFCKKGDVD-KGLYLF------------REMRE--R-------------SVVSWNLMISSLG 208 (477)
Q Consensus 160 ~~~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~------------~~~~~--~-------------~~~~~~~l~~~~~ 208 (477)
.... ++.. ...+..+.......+ .....- ..... | -....-.+.++..
T Consensus 157 ~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 157 KNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred cCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 1110 0000 000111110000000 000000 00000 0 0112455677777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH-------HHHHHHhc
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-------LVDFYCKC 281 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 281 (477)
+..+++.|++-+....... -+...++....++...|.............+.| .....-++. +..+|.+.
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 7888888888888877664 344445566667788888877777777666666 333322222 33466667
Q ss_pred CChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 282 GILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN-KATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
++++.++..|.+...+... -....+....+++........-.+ |. ..-...-...+.+.|++..|+..|.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7888888888775432111 111222333444444444433332 22 112222356677889999999999998
Q ss_pred hhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 361 TGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+.. |.|...|..-..+|.+.|.+..|++-.+.. ...|+. ..|..-+.++....+++.|.+.|++.++.+|.+...
T Consensus 385 Ikr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 8432 677888888889999999999988887777 445544 456555666677778999999999999999988777
Q ss_pred HHHHHHHHHh
Q 042503 439 YVLLSNIYAE 448 (477)
Q Consensus 439 ~~~l~~~~~~ 448 (477)
...+.+++..
T Consensus 463 ~~~~~rc~~a 472 (539)
T KOG0548|consen 463 IDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHH
Confidence 7777776664
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=7.8e-09 Score=98.06 Aligned_cols=219 Identities=12% Similarity=-0.014 Sum_probs=113.0
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC-----C---CCceeHHHHHHHHHhcCCc
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP-----R---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+++.|...|....... |.+...|-.........|+.-++..+|..-. + ++..-|-........+|+.
T Consensus 862 ~n~d~E~A~~af~~~qSLd--P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD--PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC--chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 3344445555555554444 4444444333333344444444444444311 0 2222233333334445554
Q ss_pred hHHHHHHHHHHH---------cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH----HHHHHHHh
Q 042503 316 ELGVELYEQMIA---------KGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG----CMVDVLGR 382 (477)
Q Consensus 316 ~~a~~~~~~m~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~ 382 (477)
++-+...+++.. .+.+.+.+.|........+.+.+..|.....+...--...-+...|+ .+.+.+..
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 443333333221 13344566666666666666666666665555432111123333444 34455666
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHH
Q 042503 383 SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 383 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.|.++.|...+.......+...-..-+.. .-.++++++.+.|+++..+...+. .....++......|..+.|...+
T Consensus 1020 lgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 77777776665544222222222211111 346789999999999987664333 35566666677888888888887
Q ss_pred HHHHhC
Q 042503 460 MWMREN 465 (477)
Q Consensus 460 ~~~~~~ 465 (477)
-+....
T Consensus 1099 fe~~~l 1104 (1238)
T KOG1127|consen 1099 FEVKSL 1104 (1238)
T ss_pred HHHHHh
Confidence 777654
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=5.9e-08 Score=89.94 Aligned_cols=422 Identities=13% Similarity=0.017 Sum_probs=268.9
Q ss_pred CHHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----C-CcchHHHHHHHH
Q 042503 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----P-SVLLFNSMIKAY 75 (477)
Q Consensus 1 i~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~ 75 (477)
||..|.=++...|+++.+-+.|+......+ .....|+.+...+...|.-..|..++++-.. | ++..+-..-..|
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc 403 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLC 403 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHH
Confidence 455666677888999999999998887764 3567888898999999999999999987654 2 233344444445
Q ss_pred Hh-cCCCchHHHHHHHHHhC--CC--CCCcccHHHHHHHhhcc-----------CCchhHHHHHHHHHHhcccCcchHHH
Q 042503 76 SL-NGPSEEPVKLFALLKNL--GI--WPDEYTFAPLLKACLGV-----------GDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 76 ~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
.+ -+..+++++.-.+..+. +. ...+..|..+.-+|... ....++.+.+++.++.+.. |+.+..
T Consensus 404 ~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if 482 (799)
T KOG4162|consen 404 IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIF 482 (799)
T ss_pred HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHH
Confidence 44 47778888777777662 11 11233344443333211 1234567778888776554 334444
Q ss_pred HHHHHHHhcCChhhHHHHhcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCC
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGR 212 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 212 (477)
.+.--|+..++.+.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... |-.....-+..-..-++
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhccc
Confidence 455567888999999998887655 67889999999999999999999998877642 22222222333344677
Q ss_pred hhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH---hcCChHHH
Q 042503 213 DSEALRLFHEMRDQ--AFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC---KCGILDTA 287 (477)
Q Consensus 213 ~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a 287 (477)
.++++.....+... ...+-..+.. .|....-..-+..... .. ...+.++..+..... +.-..+..
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~-~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QP-TDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cc-cccchhhHHHHHHHHhhhhhcccccc
Confidence 77777777666532 0011000000 0000000000000001 00 112222222221111 11112222
Q ss_pred HHHhccCCCCCc------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 288 RNVFKEIPRKNV------VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 288 ~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+.....|+. ..|......+.+.++.++|...+.+..... +-....|......+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 222222222332 245566677888999999998888877653 5567777777788889999999999998887
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHH--HHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYD--LIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
.. -|.++.+..++..++.+.|+..-|.. ++.++ .+.| ++..|..++..+.+.|+.++|.+.|..+.++++.+|.
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 32 24556788999999999998877777 88888 5555 5689999999999999999999999999998866554
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.7e-07 Score=84.31 Aligned_cols=411 Identities=14% Similarity=0.046 Sum_probs=233.7
Q ss_pred HHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCc
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDL 116 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 116 (477)
=++.+.+.|++++|.+...++.. .+...+..=+-++.+.+.+++|+.+.+.-... ..+...+---.-+..+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35667788899999988887765 34456667777888889999998665543321 11111111112333577888
Q ss_pred hhHHHHHHHHHHhcccCcc-hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHH-HhcCChHHHHHHHHhcCC
Q 042503 117 RVGQCVHGEIIRSGFERFG-SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGF-CKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 194 (477)
++|...++ |..++. .+...-...+.+.|++++|..+|+.+.+.+...+..-+++- ...+....+. +.+..+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccC
Confidence 88888877 344433 36666778888999999999999998764444443332221 1111111221 3444444
Q ss_pred CChhhHHH---HHHHHHhcCChhHHHHHHHHHHHcC--------CC-CCH----HH-HHHHHHHhhccCcccchHHHHHH
Q 042503 195 RSVVSWNL---MISSLGKSGRDSEALRLFHEMRDQA--------FE-LDE----AT-VVAVLPICARLGAVDIGQWIHSY 257 (477)
Q Consensus 195 ~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~--------~~-~~~----~~-~~~l~~~~~~~~~~~~a~~~~~~ 257 (477)
....+|.. ....+...|++.+|+++++...+.+ .. -+. .+ -..+.-.+...|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 22334433 3456677899999999999873221 11 011 11 12334456778999999999988
Q ss_pred HHHhCCccchhHH---HHHHHHHHHhcCChH-HHHHHhccCCCCCcee--------------H-HHHHHHHHhcCCchHH
Q 042503 258 AESSGLYRKVVSV---GNALVDFYCKCGILD-TARNVFKEIPRKNVVS--------------W-NAMISGLAFNGRGELG 318 (477)
Q Consensus 258 ~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~--------------~-~~l~~~~~~~~~~~~a 318 (477)
..+... ++.+.. -|.|+.+-....-++ .++..++......... . +.++..|. +..+.+
T Consensus 250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 888874 332221 122222211111122 1222232222111111 1 11122221 122222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhc--cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH-
Q 042503 319 VELYEQMIAKGVSPNKATFVGVLTCCAH--AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIR- 394 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~- 394 (477)
.++..... +..|. ..+..++..+.+ .....++..++....+ +.+.+ ..+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 327 RELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22222211 22233 334444444332 2246777777777763 22333 4455667778889999999999998
Q ss_pred -------hc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 395 -------SM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE-------PWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 395 -------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.. .+.-.+.+...+...+.+.++.+.|..++.++++.- +.-..++..++..-.+.|+-++|...+
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 33 334445566667777888888888888888876422 222334556666667889999999999
Q ss_pred HHHHhCC
Q 042503 460 MWMRENN 466 (477)
Q Consensus 460 ~~~~~~~ 466 (477)
+++.+.+
T Consensus 482 eel~k~n 488 (652)
T KOG2376|consen 482 EELVKFN 488 (652)
T ss_pred HHHHHhC
Confidence 9998854
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=4.3e-08 Score=90.34 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=90.7
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHH
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 318 (477)
+.+......|.+|..+++.+.+... ....|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444555666666666666655532 23344566666777777777777665432 344456666677777776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 042503 319 VELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI 398 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (477)
.++-.+.. |.......|..-..-....|++.+|++++-.+. .|+. -|.+|-+.|..++.+++.++..-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 66654432 323334444444445556666666666554333 2432 34556666666666666655511
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
..-..|-..+..-+-..|+.+.|++.|-+
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 11223444444445555555555544433
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.8e-09 Score=96.55 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=174.2
Q ss_pred hhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHH
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 318 (477)
+.+.|++..|.-.|+.+++.+ |.+..+|..|.......++-..|+..+++..+-|+ ...-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 356788888888888888888 89999999999999999998889988888876444 4555566678888888899
Q ss_pred HHHHHHHHHcCCCCCHHHHHH-------HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 319 VELYEQMIAKGVSPNKATFVG-------VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
+..++.-+... +|-...-.. .-..+.....+....++|-.+....+..+|+.++..|.-.|--.|.+++|+.
T Consensus 373 l~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99988876643 111000000 0012233344556666666665456656888899999999999999999999
Q ss_pred HHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 392 LIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 392 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.|+.+ .++|+. .+||.|+..+....+.++|+..|.+++++.|.-.++.+.|+-.|...|.+++|.+.|=..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 777765 78999999999999999999999999999999999999999999999999999998877654
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=3e-08 Score=83.00 Aligned_cols=297 Identities=13% Similarity=0.075 Sum_probs=185.7
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHH---HHHHhcCChHHHHHHHHhcCC--CChh-hHHHHHHHHHhcCC
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMI---HGFCKKGDVDKGLYLFREMRE--RSVV-SWNLMISSLGKSGR 212 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~ 212 (477)
.-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-|+++.+ ||-. +--.-...+.++|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34455566667777777777777665555555443 356667777777776666654 3322 11223345667777
Q ss_pred hhHHHHHHHHHHHcCCC------------CCHHH--HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 213 DSEALRLFHEMRDQAFE------------LDEAT--VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~------------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
++.|..-|+..++.... +.... ....+..+...|+...++.....+.+.. +-+...+..-..+|
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHH
Confidence 77777777777665311 11111 2223444566677777777777777776 67777777777788
Q ss_pred HhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH----HHHH---------HH
Q 042503 279 CKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT----FVGV---------LT 342 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------~~ 342 (477)
...|++..|+.=++... ..+...+..+-..+...|+.+.++...++-.+. .||... |..+ +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 88888887776555443 345555666666667777777777777766654 344322 1111 11
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHc
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTH 415 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 415 (477)
.....+++.+++...+...+ . .|. ...+..+-.++...|++.+|++...+. .+.|+ ..++..-..+|.-.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 22345666677776666663 2 233 123444556677778888888888877 66665 67777778888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLL 442 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (477)
..++.|+.-|+++.+.++.+..+-..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888888888888888888766554443
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.1e-07 Score=85.06 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=100.2
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC-----------CCc-chHHHHHHHHHhc
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-----------PSV-LLFNSMIKAYSLN 78 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~-~~~~~l~~~~~~~ 78 (477)
..|+.+.|.+-.+.+. +..+|..+..+|.+.+++|-|.-.+-.|.. .+. ..-....-.-...
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 4456665555444432 334667777777777777766666555543 111 1111222223455
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHh
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVF 158 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (477)
|..++|..+|.+.++. ..|-..|-..|.+++|.++-+.--+..+ ..||.....-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 6667777777666653 2233444456666666666543222111 234444445555566666666666
Q ss_pred cccCC-----------------------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---------------------
Q 042503 159 DEMSH-----------------------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--------------------- 194 (477)
Q Consensus 159 ~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------- 194 (477)
++... .|...|.-....+-..|+.+.|+.+|+...+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 65432 1222222222223335666666666655432
Q ss_pred ---CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 195 ---RSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 195 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
.|..+...+.+.|-..|++.+|...|-+.+
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233445556666666666666666665543
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=6.6e-09 Score=89.63 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA---- 345 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~---- 345 (477)
+.......+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHh
Confidence 3334445566678888888877765 455556667788888888888888888887643 33 33333444332
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCCh-HHHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHV-ELAE 422 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~ 422 (477)
-.+.+..|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++. ...| ++.++..++.+....|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 22358888899998874 34677888888888888999999999888887 3334 456777777777777777 6677
Q ss_pred HHHHHHHhcCCCCC
Q 042503 423 HAVKELINLEPWNS 436 (477)
Q Consensus 423 ~~~~~~~~~~p~~~ 436 (477)
+.+.++....|.++
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888644
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=2.4e-07 Score=84.58 Aligned_cols=259 Identities=14% Similarity=-0.003 Sum_probs=152.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
...+...|++++|...+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 344566778888888877776652 223323331 112222 33334444444331 1111444445556667788
Q ss_pred hcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhccccHHHH
Q 042503 280 KCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPNK--ATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a 353 (477)
..|++++|...+++..+ .+...+..+..++...|++++|..++++...... .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888887765 3445667777888888899999888888776532 1222 2345677788888999999
Q ss_pred HHHHHHhhhccCCCCChHHH-H--HHHHHHHhcCCHHHHHHH--H-Hhc-CCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHY-G--CMVDVLGRSGCVREAYDL--I-RSM-SIRPN---AAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
..++++........+..... + .++..+...|....+.++ + ... ...|. .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99998876322111222111 1 223333344433333332 1 111 11011 1222345667778899999999
Q ss_pred HHHHHHhcCC---------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 424 AVKELINLEP---------WNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 424 ~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++.+..... .........+.++.+.|++++|.+.+...+..+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9988765331 124455666677889999999999998887653
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1e-06 Score=84.36 Aligned_cols=377 Identities=13% Similarity=0.119 Sum_probs=229.9
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC-CCc-----chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN-PSV-----LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL 106 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 106 (477)
||......+.++...+-..+-+++++++.- +++ ..-|.|+-.-.+. +..+..+..+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 455555555666666666666666665542 222 2223333333332 3344444444444332 121 2
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
...++..+-+++|..+|+.. ..+......|++ .-+..+.|.+.-++..+|. +|..+..+-.+.|.+.+|+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHH
Confidence 33344455556666666553 223344444443 3356666666666665544 5777788888888888887
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
+-|-+.. |+..|..++....+.|.|++-.+++.-.++..-.|... ..++-+|++.++..+.+.+.. -|
T Consensus 1125 eSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------gp 1192 (1666)
T KOG0985|consen 1125 ESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------GP 1192 (1666)
T ss_pred HHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--------CC
Confidence 7775543 44567777888888888888888777666665555443 356667777777666555442 34
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH 346 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 346 (477)
+..-...+.+-+...|.++.|.-+|. ++..|..+...+...|+++.|...-++ ..+..||..+-.+|..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVD 1261 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhc
Confidence 44444677777777788887777665 445678888888888888888776554 3367788888888888
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
.+.+..|. |. ...+-....-...++.-|...|.+++.+.+++.. |...- ...|..+.-.|.+- ++++..+.
T Consensus 1262 ~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 77765542 32 1223344556778999999999999999999887 65433 34566565555443 45555555
Q ss_pred HHHHHh-cC-C------CCCchHHHHHHHHHhcCCchHHHH
Q 042503 425 VKELIN-LE-P------WNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 425 ~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
++-... .+ | +....|..+...|.+-..|+.|.-
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 554432 11 1 224567777777777777776643
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=1.2e-07 Score=90.41 Aligned_cols=427 Identities=15% Similarity=0.058 Sum_probs=259.9
Q ss_pred hhcccc-hhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc--c
Q 042503 28 HKLHQS-NLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE--Y 101 (477)
Q Consensus 28 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~ 101 (477)
....++ ...|..+...|+...+...|.+.|++.-+ .+..++....+.|++..+++.|..+.-..-+.. +.-. .
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~ 563 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKE 563 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHh
Confidence 333344 34788888888888899999999998766 566788899999999999999999833322211 1111 1
Q ss_pred cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCch-HHhH--HHHHHHHh
Q 042503 102 TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDV-IVRN--LMIHGFCK 178 (477)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~l~~~~~~ 178 (477)
.|....-.+...++..++..-|+...+..+. |...|..++++|.++|++..|.++|.+...-++ ..|. -..-..+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 2333334456778899999999998886555 778899999999999999999999987765222 2222 22334566
Q ss_pred cCChHHHHHHHHhcCC---------C-ChhhHHHHHHHHHhcCChhHHHHHHHHH-------HHcCCCCCHHHHHHHHHH
Q 042503 179 KGDVDKGLYLFREMRE---------R-SVVSWNLMISSLGKSGRDSEALRLFHEM-------RDQAFELDEATVVAVLPI 241 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~l~~~ 241 (477)
.|++.+|...+..+.. . -..++-.+...+.-.|-..++.+.++.- .......+...|..+-++
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 8899999888887753 0 1112222233333333333333333322 211111111112111111
Q ss_pred -----------------------hhccCcc---c---chHHHHHHHHHhCCccchhHHHHHHHHHHHh----c----CCh
Q 042503 242 -----------------------CARLGAV---D---IGQWIHSYAESSGLYRKVVSVGNALVDFYCK----C----GIL 284 (477)
Q Consensus 242 -----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~ 284 (477)
.-..+.. + .+.+.+-...+. ..++..|..++..|.+ . .+.
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl---~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL---AIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH---hhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 1111111 1 000111001111 1223334444443333 1 122
Q ss_pred HHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 285 DTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 285 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
..|+..+.+..+ .+...|+.|.-. ...|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|.+.+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 345666665443 455667766554 55567766666666655543 5567778888878888899999999999887
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHcCChHHHHH----------H
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAAIWGSLLSSCRTHGHVELAEH----------A 424 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~ 424 (477)
. -.|.+...|-.........|+.-++..+|..- +.-|+...|..........|+.++-+. .
T Consensus 878 S--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 S--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred h--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 3 22555666665555566778888888888763 445666666555555566666655444 3
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+++.+...|++..+|...+..+-+.+.+.+|.+...+++
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556678888899999999999999988888777654
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=2e-08 Score=98.56 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=175.3
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC--------CceeHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK--------NVVSWNAMISGLAFNGRGELGVELYEQMI 326 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 326 (477)
|++..... |.+...|-..+......++.+.|++++++.... -...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444444 788888999999999999999999999987651 23468888888788888888899999998
Q ss_pred HcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC---CH
Q 042503 327 AKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP---NA 402 (477)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~ 402 (477)
+.- .....|..|...|.+.+.+++|.++++.|.++.+ .....|..++..+.++.+-++|..+++++ ..-| ..
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 753 2345678889999999999999999999997665 66778999999999999999999999988 3333 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
......+..-.+.|+.+++..+|+..+...|...+.|+.+++.-.+.|+.+.++.+|+++++.++++..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 455666666789999999999999999999999999999999999999999999999999998876543
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=8.6e-07 Score=91.57 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=166.8
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----C----c--h--HHhHHHHHHHH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----R----D--V--IVRNLMIHGFC 177 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~~ 177 (477)
....|+++.+..+++.+-......+..........+...|++++|...++.... . + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666555555442211122223333344455566777777766654421 0 1 0 11122234455
Q ss_pred hcCChHHHHHHHHhcCC----CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhhc
Q 042503 178 KKGDVDKGLYLFREMRE----RSV----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF---ELD--EATVVAVLPICAR 244 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~l~~~~~~ 244 (477)
..|++++|...+++... .+. ...+.+...+...|++++|...+++.....- .+. ...+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67888888887776543 111 2345566677788999999888888764311 111 1233445556677
Q ss_pred cCcccchHHHHHHHHHh----CCc--cchhHHHHHHHHHHHhcCChHHHHHHhccCCC------C--CceeHHHHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESS----GLY--RKVVSVGNALVDFYCKCGILDTARNVFKEIPR------K--NVVSWNAMISGLA 310 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 310 (477)
.|+++.|...+.+.... +.. +.....+..+...+...|++++|...+++... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888888877766543 110 01122233445556666777777776665432 1 1122333444555
Q ss_pred hcCCchHHHHHHHHHHHcCCCC-CHHHHHH-----HHHHhhccccHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSP-NKATFVG-----VLTCCAHAGLVEKARELFASMTGLHSIVPN---LEHYGCMVDVLG 381 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 381 (477)
..|++++|...+.+........ ....+.. .+..+...|+.+.|...+..... ...... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHH
Confidence 6677777777776664421010 1111111 11223345666666666655542 110111 011234555666
Q ss_pred hcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 382 RSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
..|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++++...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 667777776666655 11111 13445555566667777777777777766653
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.2e-06 Score=83.87 Aligned_cols=408 Identities=12% Similarity=0.072 Sum_probs=263.7
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC------------CCc------
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN------------PSV------ 65 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~------ 65 (477)
.|..-+-+.+++......++..++.| ..|+.++|++...|..+++-.+- .+.+-+- +|+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEe
Confidence 34556667788888888899999998 46899999999999887654332 2221110 111
Q ss_pred -----------------chHHHHHHHHHhcCCCchHHHHH-----------HHHHhCCCC--CCcccHHHHHHHhhccCC
Q 042503 66 -----------------LLFNSMIKAYSLNGPSEEPVKLF-----------ALLKNLGIW--PDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 66 -----------------~~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~~~~--p~~~~~~~l~~~~~~~~~ 115 (477)
..|....+-+.+..+.+--.+++ ++..+.+++ .|+...+.-+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 11233333444455544433333 122222222 244455556666666666
Q ss_pred chhHHHHHHHHHHhc--ccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 116 LRVGQCVHGEIIRSG--FERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
..+-.++++.++-.+ +.-+...-+.|+- -+-.-+...+.+..+++..-|.. .+.......+-+++|..+|++..
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiL-tAikad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLIL-TAIKADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHH-HHhhcChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc
Confidence 677777777665321 1112222333332 22334455566666655541111 11222333444555555555432
Q ss_pred C-------------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Q 042503 194 E-------------------------RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 194 ~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (477)
- ..+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+
T Consensus 1076 ~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1076 MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcH
Confidence 1 2345788999999999999888877643 23677899999999999999
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 328 (477)
+.-..++..+.+... .+... ..|+-+|++.++..+-++++. .||......+.+-|...|.++.|.-+|...
T Consensus 1150 edLv~yL~MaRkk~~-E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--- 1220 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR-EPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--- 1220 (1666)
T ss_pred HHHHHHHHHHHHhhc-Cccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---
Confidence 999999888887764 44333 588999999999888777654 477777788888888888888887776543
Q ss_pred CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHH
Q 042503 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI--RPNAAIWG 406 (477)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~ 406 (477)
.-|..|...+...|+++.|.+.-++. .+..+|...-.+|...+.+.-| +-.|. -....-+.
T Consensus 1221 ------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA----QiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1221 ------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA----QICGLNIIVHADELE 1283 (1666)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH----HhcCceEEEehHhHH
Confidence 34667777788888888887755443 3567888888888776655433 22232 23455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
.++..|...|-+++.+.+++..+.+...+-..|..|+-.|.+-.
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999988777788888888877653
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.8e-08 Score=85.56 Aligned_cols=397 Identities=14% Similarity=0.063 Sum_probs=211.9
Q ss_pred HHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCch
Q 042503 42 SVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLR 117 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 117 (477)
.+....|+++.|+.+|.+... +|...|+.-..+|+..|++++|++=-.+-++ +.|+ +..|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 455677888888888886654 5667788888888888888888877776666 4566 447888888888888888
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHH-----HHHHHhcCChHHHHHHHHhc
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLM-----IHGFCKKGDVDKGLYLFREM 192 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~ 192 (477)
+|...|.+-++..+. +...+..+.+++. .+.+. -+.. .+...|..+ .+.+...-.+..-++.+..-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~--~~~~--~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA--DQLF--TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh--hhhc--cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888888887775333 5566777777661 11111 1111 122222221 22222222222222222221
Q ss_pred CCCChhh---HHHHHHHHHhcCChh-HHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 193 RERSVVS---WNLMISSLGKSGRDS-EALRLFHEM-RDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 193 ~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+. ++.. ...++.+.......+ .....-..+ ...+..|. .+.. ..................
T Consensus 159 p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 159 PT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIEDNTEERRVKEK 223 (539)
T ss_pred cH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccchhHHHHHHHHh
Confidence 11 0000 011111111100000 000000000 00001111 0000 000000000000000011
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH------
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG------ 339 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------ 339 (477)
..-...++++..+..+++.|...+....+ .++.-++....++...|.+..+........+.| .-...-|+.
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHH
Confidence 11123455555555566666655554443 233334444555556666555555555555444 112222222
Q ss_pred -HHHHhhccccHHHHHHHHHHhhhccCCCCChH-------------------------HHHHHHHHHHhcCCHHHHHHHH
Q 042503 340 -VLTCCAHAGLVEKARELFASMTGLHSIVPNLE-------------------------HYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 340 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+..++.+.++++.++..|++....+ ..|+.. -...-...+.+.|++..|++.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 2223444455666666665554211 122211 1111245567889999999999
Q ss_pred Hhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 394 RSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 394 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|.....|..=+.++....+|++|.+.|++-++.+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998 3344 557889999999999999999999999999999988899998999999999999999998887765
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=3.9e-08 Score=83.73 Aligned_cols=183 Identities=10% Similarity=-0.068 Sum_probs=115.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-c---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH---H
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-V---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK---A 335 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~ 335 (477)
+.....+..++..+...|+++.|...|+++.. |+ + ..+..+..++...|++++|...++++.+.. +.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 44555566677777777777777777776654 22 1 245556667777777777777777777653 1111 1
Q ss_pred HHHHHHHHhhcc--------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 042503 336 TFVGVLTCCAHA--------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGS 407 (477)
Q Consensus 336 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 407 (477)
++..+..++... |+++.|.+.|+.+.... +.+...+..+..... ..... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 344444445443 56677777777776321 122222221111100 00000 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+...+.+.|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999999987765 468999999999999999999999988765
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=4.4e-07 Score=76.24 Aligned_cols=309 Identities=9% Similarity=0.036 Sum_probs=181.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH---HHHhhccCCchhHHHHHHHHHHhcccCcchH-HHHHHHHH
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL---LKACLGVGDLRVGQCVHGEIIRSGFERFGSI-RIGVVELY 145 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 145 (477)
-+.+.+..+|++..|+.-|....+. |+..|..+ ...|...|+-..|..=+...++ ++||... ...-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 3555666666666676666666542 33333333 3445556666666655555555 2333221 11222345
Q ss_pred HhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 146 TSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
.++|+++.|..-|+.+.+.+.. .|...+|.+-+..+. ........+..+...|+...|+.....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 5666666666666655542110 000000100000000 000112233445556777777777777766
Q ss_pred cCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce-----
Q 042503 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV----- 300 (477)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 300 (477)
-. +.|...+..-..+|...|++..|+.-++.+.+.. .++...+..+...+...|+.+.++...++..+-|+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 52 5566666666777777777777777777666666 556666667777777778888777777776653332
Q ss_pred -eHHHH---------HHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCC
Q 042503 301 -SWNAM---------ISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIV 367 (477)
Q Consensus 301 -~~~~l---------~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (477)
.|..+ +......++|.++++..+...+...... ...+..+-.++...+++-+|++...++.. -.+
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~ 338 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCc
Confidence 12111 2234567788888888888777642212 22345566677888999999999999983 224
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
.|+.++---..+|.-...++.|+.-|+.. ...++.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 45778877888999999999999999988 545543
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=2.7e-06 Score=78.86 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=131.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Q 042503 173 IHGFCKKGDVDKGLYLFREMRERSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDI 250 (477)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (477)
+.+......+.+|+.+++.+.+.++. -|..+...|...|+++.|.++|-+.- .++-.+..|.+.|+|..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34555678888888888888765443 47778888888999999988886532 34456777888888888
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
|.++-.+.. |. ......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-.-.
T Consensus 810 a~kla~e~~--~~-e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 810 AFKLAEECH--GP-EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHhc--Cc-hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence 877655433 22 45566666667777888999999999988888874 467788888888888877664321
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.-..|-..+..-+...|+...|+.-|-+.. -|..-+.+|...+-+++|.++-+.-
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 123355556666777778777777665544 1333445555556666665555443
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-06 Score=81.15 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=148.9
Q ss_pred chhHHHhHH--HHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhC-C-------C-CCCcc
Q 042503 33 SNLILAHFV--SVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-G-------I-WPDEY 101 (477)
Q Consensus 33 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~p~~~ 101 (477)
|+.+-.+++ +.|..-|+.|.|.+-.+.+++ ...|..+.+.|.+.++.+-|.-.+-.|... | . .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 445555554 456778999999887776654 457999999999999888887777766542 1 1 122 3
Q ss_pred cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcC
Q 042503 102 TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKG 180 (477)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~ 180 (477)
+=..+.-..+..|.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-.. .=..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333344467789999999998876642 344567788999999998776443 22346666667777788
Q ss_pred ChHHHHHHHHhcCCC-----------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 181 DVDKGLYLFREMRER-----------------------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 181 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
+.+.|++.|++...+ |...|.-....+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 999999999886542 222333333444445555555555554432 334
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+++..+-.|+.++|.++-++ ..+..+...|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45555556666666655543 333444455666666666666666666554
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.00 E-value=4.6e-08 Score=79.70 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH-HHcCC--hHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSC-RTHGH--VELA 421 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 421 (477)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666532 2566677777777777777777777777777 4444 445666666653 55565 4777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
.++++++++.+|.++.++..++..+.+.|++++|+..|+++++...+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777766533
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=2e-06 Score=78.53 Aligned_cols=265 Identities=12% Similarity=0.023 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHH-HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH--
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEATVV-AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-- 273 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 273 (477)
..|..+...+...|+.+.+...+....... ..++..... .....+...|+++.+..+++.+.+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhH
Confidence 456667777777888888777666655432 122332222 22334577899999999999999886 666655442
Q ss_pred -HHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc
Q 042503 274 -LVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL 349 (477)
Q Consensus 274 -l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 349 (477)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665333223 233445567889999999999999999976 6667788889999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC--C-HHHH-H--HHHHHHHHcCChHH
Q 042503 350 VEKARELFASMTGLHSIVPNL--EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP--N-AAIW-G--SLLSSCRTHGHVEL 420 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~~ 420 (477)
+++|...+++........|+. ..|..+...+...|++++|.+++++. ...| . .... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988433222332 34557888999999999999999997 3233 1 2111 1 22333444554444
Q ss_pred HHHHHHHHHh----cCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 421 AEHAVKELIN----LEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 421 a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+. +.+.. ..|.. .......+.++...|+.++|...++.+....
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4333 22221 11221 2233367777889999999999999987643
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=1.8e-07 Score=92.10 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=182.3
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCC--------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-CC-hhhHHHH
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-RS-VVSWNLM 203 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~l 203 (477)
+...|...|......++.++|.++.++... .-...|.++++.-..-|.-+...++|++..+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 566788899999999999999999998765 2345788888888888988899999999887 23 4578899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-............+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999887 34667788899999999999999999999998876433467777788888899999
Q ss_pred hHHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccccHHHHHHHHH
Q 042503 284 LDTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK--ATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
.+.++.+|+..... -...|+..++.-.++|+.+.+..+|++....+++|-. +.|...+..--+.|+-..++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 99999999988753 4578999999999999999999999999998887753 345555655455566554444443
Q ss_pred Hh
Q 042503 359 SM 360 (477)
Q Consensus 359 ~~ 360 (477)
++
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 33
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=7.5e-07 Score=73.45 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHH-HHHHHH
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNL-MISSLG 208 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~ 208 (477)
..-+.+.+.-+.+..++..|++++..-.+ | +....+.+..+|....++..|-..++++.. |...-|.. -...+.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 33456666667788889999998877665 3 556677888888899999999999988876 44444432 345667
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVL--PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+.+.+..|+++...|.+. |+...-..-+ ......+++..+..+.++....+ +..+.....-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 788899999988877653 2222111112 22345677777777776654322 22233444555667778888
Q ss_pred HHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 287 ARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 287 a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
|..-|+...+ .....||..+ ++.+.|+++.|+++..+++++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 8877777665 2334555444 344567777888888888777754
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=1.4e-05 Score=71.76 Aligned_cols=130 Identities=14% Similarity=0.053 Sum_probs=84.8
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLL 107 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 107 (477)
|-|+..|..+++-+... .++++++.++++.. | ....|..-|..-.+.++++...++|.+.... ..+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 56888999999987776 99999999999876 3 4578999999999999999999999998875 34566666655
Q ss_pred HHhhc-cCCchhHH----HHHHHHH-HhcccC-cchHHHHHHHH---------HHhcCChhhHHHHhcccCC
Q 042503 108 KACLG-VGDLRVGQ----CVHGEII-RSGFER-FGSIRIGVVEL---------YTSCGQMDDGMKVFDEMSH 163 (477)
Q Consensus 108 ~~~~~-~~~~~~a~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~ 163 (477)
.---+ .++...+. +.|+-.+ +.|+++ +...|+..+.. |..+.+++...+++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 54322 23333322 2333332 345443 23345544433 2333455566666666554
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.1e-07 Score=85.36 Aligned_cols=250 Identities=14% Similarity=0.028 Sum_probs=190.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
..-+.+.|+..+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. |.+..+...|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence 345678899999999999888774 4467778888888888899999999999999998 8999999999999999999
Q ss_pred hHHHHHHhccCCCCCc-eeHHHHH---------HHHHhcCCchHHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 284 LDTARNVFKEIPRKNV-VSWNAMI---------SGLAFNGRGELGVELYEQM-IAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
-..|...+++-....+ ..|.... ..+..........++|-++ ...+..+|......|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988876532111 0000000 0111111223344444444 445545788888888888999999999
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|.+.|+.+... -|-|...||.|...++...+.++|+..|+++ .++|+. .+...|+-+|...|.+++|...|-.++.
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999842 2567789999999999999999999999999 888886 5778889999999999999999999987
Q ss_pred cCCC-----C-----CchHHHHHHHHHhcCCchHHHHH
Q 042503 431 LEPW-----N-----SGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 431 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+.+. . ..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6533 1 24777777778888887755443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=6.5e-08 Score=74.56 Aligned_cols=105 Identities=10% Similarity=-0.085 Sum_probs=55.8
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 416 (477)
.+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ...| +...+..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444555555555555555555521 1334455555555555555555555555555 2222 3345555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
++++|+..|+++++..|+++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555555444443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=1.1e-06 Score=77.02 Aligned_cols=213 Identities=12% Similarity=0.004 Sum_probs=140.7
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC-ChHHHHHHhccCCCC---CceeHHHHHHHHHhcCCc--hHHH
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG-ILDTARNVFKEIPRK---NVVSWNAMISGLAFNGRG--ELGV 319 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~ 319 (477)
+..++|..+..++.+.. |.+..+|.....++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555555 566666665555566666 467777777766542 334455544445555543 5678
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc---CC----HHHHHHH
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---GC----VREAYDL 392 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 392 (477)
.+++++.+.. +-|..+|+....++...|+++++++.++++.+.. +.+...|+.....+.+. |. .++++..
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888888776 5577888888888888888888888888887432 34455565555444443 22 2456666
Q ss_pred HHhc-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC----------------
Q 042503 393 IRSM-SIRP-NAAIWGSLLSSCRTH----GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG---------------- 450 (477)
Q Consensus 393 ~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 450 (477)
..++ ...| |...|+.+...+... +...+|.+.+.++.+.+|.++.+...|+..|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 6555 4444 446777777777663 34567888999988889999999999999998643
Q ss_pred --CchHHHHHHHHHH
Q 042503 451 --RWDDAETLRMWMR 463 (477)
Q Consensus 451 --~~~~A~~~~~~~~ 463 (477)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 2367888888883
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=5.6e-06 Score=85.62 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=25.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 305 MISGLAFNGRGELGVELYEQMIAK----GVSP-NKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..++...|++++|...+++.... |..+ ...+...+..++...|+.++|...+.+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444555555555555544332 1111 11233334444455555555555555544
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=1.5e-07 Score=72.63 Aligned_cols=107 Identities=8% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..+++..+ ..|+ .+..+...+...|++++|...|+.. ...| +...+..++.++...|++++|...|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555552 2344 3556778889999999999999998 5444 56788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 433 PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.++..+..++.++...|++++|+..+++.++..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=7.4e-07 Score=82.43 Aligned_cols=206 Identities=9% Similarity=0.071 Sum_probs=127.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 173 IHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
...+...|-...|..+|++. ..|..++..|...|+..+|..+..+-.+ -+||+..|..+.+......-+++|.
T Consensus 405 aell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHH
Confidence 34444445555555555442 3355555566666666666666555554 2556655555555554444455555
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
++.+..-.. +...+.....+.+++.++.+.|+.-.+- -..+|.....+..+.++++.|.+.|..-....
T Consensus 478 Elsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 544433221 1123333344467777777777765543 33567777777777888888888887776643
Q ss_pred CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 330 VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.+...||.+-.+|.+.++..+|...+++..+ .+ ..+...|.+.+....+.|.+++|++.+.++
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 55567788888888888888888888888773 44 455667777777778888888888887777
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3e-06 Score=68.94 Aligned_cols=147 Identities=9% Similarity=0.030 Sum_probs=101.3
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH----h
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG----R 382 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 382 (477)
..|+..|++++|++..+... +......=...+.+..+.+.|.+.++.|.+ -.+..+.+-|..++. .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 45677788888887776621 122222223445667778888888888873 244455665555554 3
Q ss_pred cCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH-HHH
Q 042503 383 SGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE-TLR 459 (477)
Q Consensus 383 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~ 459 (477)
.+...+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++.+|.+...++-.-...|...++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45678888888888 467888888888888888888888888888888888888888888887777777765543 344
Q ss_pred HHHH
Q 042503 460 MWMR 463 (477)
Q Consensus 460 ~~~~ 463 (477)
.++.
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=7.5e-07 Score=72.68 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (477)
-+..|...|+++.+....+.+..+.. .+...++.+++...++...+.+ +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567777887776555433322210 1123566788888888888876 78899999999999999999999
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHHH-HhcCC--HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDVL-GRSGC--VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
...|++..... +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998432 55777888888864 67777 59999999999 5555 5678899999999999999999999999
Q ss_pred HhcCCCCCchH
Q 042503 429 INLEPWNSGNY 439 (477)
Q Consensus 429 ~~~~p~~~~~~ 439 (477)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998765443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1e-06 Score=81.58 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=118.4
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
..+.+|...|+..+|..+..+..+ |++..|..+++......-+++|.++.+....+ .-..+.....+.+++
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhH
Confidence 444555555555555444443332 34444444444444333344444444332221 111111112234666
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+++.+.|+.-.+.. +....+|-.+.-+..+.+++..|.+.|... ...||. ..||++..+|.+.|+-.+|...++++
T Consensus 502 s~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 502 SEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 66666666555322 334456777777778888899888888887 556665 78999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 429 INLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+-.+...|....-+..+.|.+++|.+.+.++.+..
T Consensus 580 lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 580 LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 98887778888888888889999999999988887643
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.2e-06 Score=71.18 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=129.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+-..+...|+-+....+........ +-+.......+....+.|++..|...+.+.. ..-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHH
Confidence 555667777888888888777755432 4455566668888889999999999999998 3458889999999999999
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++..+....+.+...-..++.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988887 5444 446788899999999999999999999998888889999999999999999999987765
Q ss_pred HH
Q 042503 461 WM 462 (477)
Q Consensus 461 ~~ 462 (477)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=8.5e-07 Score=75.55 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchh---HHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ce---
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVV---SVGNALVDFYCKCGILDTARNVFKEIPR--KN-VV--- 300 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~--- 300 (477)
.....+......+...|+++.|...++.+.... |.++ .++..+..++...|++++|...++++.+ |+ ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 355667778888999999999999999998876 4433 4667889999999999999999999875 32 22
Q ss_pred eHHHHHHHHHhc--------CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH
Q 042503 301 SWNAMISGLAFN--------GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH 372 (477)
Q Consensus 301 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (477)
++..+..++... |++++|...++.+.... +-+......+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~---------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA---------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH---------HH
Confidence 355555666554 77889999999998763 323333322221110 000 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
...+...|.+.|++++|+..+++. ...| ....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124667788999999999999888 2222 346888999999999999999999888876665
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=1.9e-06 Score=70.09 Aligned_cols=160 Identities=14% Similarity=0.056 Sum_probs=130.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|.+..+ ..+...+...|+-+.+..+..+... .|.......+....+.|++..|+..+++..... ++|...|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 566666 6777888888888888888777543 244455668888899999999999999998875 88999999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 419 (477)
-+|.+.|+.+.|..-|.+..+.. +-+...++.|...|.-.|+++.|..++... .-.-|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 99999999999999999988644 345567888999999999999999999988 32336778888888999999999
Q ss_pred HHHHHHHHH
Q 042503 420 LAEHAVKEL 428 (477)
Q Consensus 420 ~a~~~~~~~ 428 (477)
+|+.+...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 998886653
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=1.2e-06 Score=84.78 Aligned_cols=132 Identities=14% Similarity=0.011 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSL 408 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 408 (477)
+.+...+..|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++. ...|+. .....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3345555555555555666666666666555311 223334445555555666666666655555 333333 344455
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555566666666666666655555556666666666666666666666655544
No 123
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.7e-06 Score=75.92 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNG-RGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
++..+-..+...++.++|+....++.+.++ .+|+....++...| ++++++..++++.+.+ +-+..+|+.-..++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334455556667888899999988876443 45665666666777 5799999999999876 556667776655555
Q ss_pred cccc--HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc---CC-
Q 042503 346 HAGL--VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH---GH- 417 (477)
Q Consensus 346 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---~~- 417 (477)
+.|. .+++..+++++.+.. +-+..+|+...-++...|+++++++.++++ .. ..|...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 6665 367788888887432 567788888888888999999999999998 33 44567787777666554 22
Q ss_pred ---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCCC
Q 042503 418 ---VELAEHAVKELINLEPWNSGNYVLLSNIYAEG----GRWDDAETLRMWMRENNV 467 (477)
Q Consensus 418 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 467 (477)
.++.+....+++..+|.+..+|..+..++... ++..+|.+.+.+....++
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 25678888899999999999999999999883 455778888888776543
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.2e-05 Score=64.06 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=112.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----c
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----A 347 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~ 347 (477)
..-...|+..|++++|++...... +....-.=...+.+..+.+-|...+++|.+-. +..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 344556778888888888877732 33333333455667778888999999998643 56677766666543 4
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCh-HHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHV-ELAEHA 424 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 424 (477)
+.+..|.-+|+++.+ ..+|+..+.+....++...|++++|..++++. ....++.++..++..-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 568889999999984 34788888888888899999999999999888 4455677777777666666655 445667
Q ss_pred HHHHHhcCCCCC
Q 042503 425 VKELINLEPWNS 436 (477)
Q Consensus 425 ~~~~~~~~p~~~ 436 (477)
+.......|.++
T Consensus 265 l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 265 LSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhcCCcch
Confidence 777777777644
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7.3e-07 Score=68.48 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
...+...+...|++++|.+.|+.. ...| +...+..+...+...|++++|...++++++.+|.++..+..++..|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444455555555555555554 2222 33445555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHhC
Q 042503 451 RWDDAETLRMWMREN 465 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~ 465 (477)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00033 Score=63.24 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=78.1
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
.+|-..++.-.+......|..+|.+..+.+..+ +.....+++.-+| .++...|.++|+.=.+.+ ..++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 456666666666666666777777776665555 5555566666554 356666777776555333 223333344555
Q ss_pred HHHhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 379 VLGRSGCVREAYDLIRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
-+...++-..|..+|++. ++.|+ ...|..++..-..-|+...+..+-++.....|
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 666666666677777666 22333 25677777666667777777666666655444
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=6.7e-07 Score=67.61 Aligned_cols=97 Identities=12% Similarity=-0.064 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
....-.+...+...|++++|.++|+-. ...| +..-|..|..++...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445666778899999999999998 4455 45778899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=6.5e-06 Score=80.67 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=151.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATV-VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.+...+..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++...+.-+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------h
Confidence 35567888999999999999999999976665 4544333 2222345555554444333 2
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
++.......++.....+...+.. .+...+..+..+|.+.|+.+++..+|+++.+.. +-|....|.+...+... +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22223333333222333333322 233467788889999999999999999999987 77888899999999888 999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----------------------CCCCCHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----------------------SIRPNAAIWGSLL 409 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~ 409 (477)
+|.+++.++... |...+++.++.+++.++ +..--..++..+-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999998888742 33333444444444444 2122234455555
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
..|...++++++..+++.+++.+|.|..+...++..|. +.+.. ...+++.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 66778889999999999999999999999999999987 44444 3444443
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=7.3e-08 Score=52.71 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 365 SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=1.3e-06 Score=78.00 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=102.2
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCR 413 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 413 (477)
....++..+...++++.|+.+|+++.+ . .|+ ....++..+...++-.+|++++++. ..+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-R--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-c--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344566667777889999999999884 2 244 4455788888888888999999888 33446677777788899
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
..++++.|+.+.+++++..|.+..+|..|+.+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988774
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7e-08 Score=52.78 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=29.8
Q ss_pred cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 328 KGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+|+.||..||+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999998874
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=2.5e-06 Score=65.46 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
.+++..... +.+......+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...++.. ...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555543 334455667777888899999999999988742 2557788888999999999999999999888 444
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 400 P-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 400 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
| +...+..+...+...|++++|...++++++..|.+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4 56788888889999999999999999999999977653
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.00083 Score=64.48 Aligned_cols=407 Identities=15% Similarity=0.116 Sum_probs=225.1
Q ss_pred hhcCChhHHHHHhccCCC--CCcchHHHHHHHH--HhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHH
Q 042503 45 GTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY--SLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 120 (477)
...+++..|.....++.+ |+. .|..++.++ .+.|+.++|..+++.....+. -|..|...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345778888888777665 443 344455544 577888888888877765542 26777888888888888888888
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChh----hHHHHhcccCCCchHHhHHHHHHHHh-cCC---------hHHHH
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMD----DGMKVFDEMSHRDVIVRNLMIHGFCK-KGD---------VDKGL 186 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~---------~~~a~ 186 (477)
.+|++..... |+......+..+|.+.+++. .|++++....+.--..|+. ++.+.+ ... ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 8888887753 34555566666777766554 3666676665544444443 333322 111 12344
Q ss_pred HHHHhcCCCC--h---hhHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 187 YLFREMRERS--V---VSWNLMISSLGKSGRDSEALRLFHE-MRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 187 ~~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
+.++.+.+.+ . .-...-...+...|++++|+.++.. ..+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555554432 1 1112222344567778888888743 33333333444445666777778888888888888888
Q ss_pred hCCccchhHHHHHHHHHHH----------------hcCChHHHHHHhccCCCC-CceeHHHHHHHHH---hcCCchHHHH
Q 042503 261 SGLYRKVVSVGNALVDFYC----------------KCGILDTARNVFKEIPRK-NVVSWNAMISGLA---FNGRGELGVE 320 (477)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~ 320 (477)
.+ +++ |...+..+. ..+..+...+...+.... .-..|-+-+.+.. .-|+.+++..
T Consensus 255 k~--~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 255 KG--NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred hC--Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 77 444 222222111 112222222222222211 1122333333333 2355555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH-------HHHHHHHHHHhcC-----CHHH
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE-------HYGCMVDVLGRSG-----CVRE 388 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g-----~~~~ 388 (477)
.|-+ +-|-.| .+..=+..|...=..+.-..++...... .++.. -+...+....-.| .-+.
T Consensus 330 ~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 3332 222222 2223333444444445555555555421 12211 0222222222233 1222
Q ss_pred HHHHHHhc------C------CCCCH---------HHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 389 AYDLIRSM------S------IRPNA---------AIWGSLLSSCRTHGHV---ELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 389 A~~~~~~~------~------~~p~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
-..++++. | .-|+. .+.+.|+..|.+.++. -+|+.+++......|.|+..-..+++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 33333333 1 12222 2345667778777764 47888899999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 445 IYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+|.-.|-...|.+.++.+--+.+..
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhh
Confidence 9999999999999998886555443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.1e-05 Score=71.72 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=68.3
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 421 (477)
+...|+++.|+..++.+.. ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.+.|++++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3345666666666666552 22444445555556666666666666666666 44555 34455556666666666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+.++++....+|+++..|..|+++|...|+..+|..-.-+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666666666666666666666666666555555444433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=2.1e-05 Score=69.95 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSG 384 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 384 (477)
.-.+...|++++|+..++.++..- |-|..........+...++.++|.+.++++... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcC
Confidence 334556789999999999988763 556666777788899999999999999999843 344 566677888999999
Q ss_pred CHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 385 CVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 385 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
++.+|++.+++. ..+-|+..|..|..+|...|+..++.... +..|...|++++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999999988 55667789999999999999998887664 44566677777777777666
Q ss_pred HhCC
Q 042503 463 RENN 466 (477)
Q Consensus 463 ~~~~ 466 (477)
.+..
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 6554
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.6e-05 Score=64.28 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAM---ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
.++..+.-+....|+.+.|...++++...=+.++... ..-+-..|++++|+++|+.+.+.+ |.|..++..-+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3444455555556666666666665543211111111 112335688899999999998876 667777776666666
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC---ChHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG---HVEL 420 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~ 420 (477)
..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.++++ -+.| ++..+..+...+.-.| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888887774 35788999999999999999999999999998 3344 5566677777665544 6778
Q ss_pred HHHHHHHHHhcCCCCCchHHH
Q 042503 421 AEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.++|.++++++|.+.+.+..
T Consensus 210 arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHH
Confidence 899999999999866555443
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=1.7e-05 Score=77.83 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLA 310 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 310 (477)
+...+..++..+...++++++.++.+...+.. |.....|-.++..+...++++.+..+ .++..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 44556777777778888888888888777666 66666666666677776665554433 3444444
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
...++..+..++..|... .-+...+..+..+|.+.|+.+++..+++++.+ .. +.|+.+.|.+...|... ++++|.
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 555565555555566553 34556888999999999999999999999995 43 67888999999999999 999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH--------------------HHHHHHHhcC
Q 042503 391 DLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV--------------------LLSNIYAEGG 450 (477)
Q Consensus 391 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~g 450 (477)
+++.+. +..+...+++..+.++|++++..+|++.+.+. -+-..|...+
T Consensus 170 ~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 170 TYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 998875 22366777888889999999888888754432 2335566778
Q ss_pred CchHHHHHHHHHHhCCCc
Q 042503 451 RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~ 468 (477)
+|+++..+++.+++...+
T Consensus 238 ~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 238 DWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhHHHHHHHHHHhcCCc
Confidence 899999999999886544
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.9e-06 Score=70.16 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH---GHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+-|...|-.|...|...|++..|...|.+. .+ .+++..+..+..++..+ ....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 678889999999999999999999999988 43 34556777777776544 35678999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
|+..+...|++.+|...|+.|.+...+.+|+.+.||
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999999888888877764
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=4.1e-05 Score=74.38 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++..+..|..+..+.|.+++|..+++...+.. |-+......+..++.+.+++++|...+++... .-+.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 35566666777777777777777777777653 44455566666777777777777777777763 2244455566666
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.++.+.|++++|..+|++. ...|+ ..++..+..++...|+.++|...|+++++...+-...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 7777777777777777777 23333 5667777777777777777777777777665433333
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=6.4e-06 Score=61.61 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSN 444 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 444 (477)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..++.++.+.|+++.|...++++....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555555555555555555 22222 2344445555666666666666666666555543 334555566
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 042503 445 IYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.+.|++++|.+.++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=1.5e-05 Score=61.81 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHH
Q 042503 347 AGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 420 (477)
.++...+...++.+.+..+-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666664321110 0122333455666677777777777776 222333 233445666677777777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 421 AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
|+..++.. ...+..+..+...+.+|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777552 22333455666777777777777777777765
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.9e-05 Score=60.77 Aligned_cols=163 Identities=16% Similarity=0.148 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
|..++-+....|+.+-|...++++...- +-+...-..-.--+...|++++|+++++.+.+.. +.|..++-.-+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 4445556667899999999999998763 3333333222333556799999999999999533 666777777777777
Q ss_pred hcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CchHHH
Q 042503 382 RSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG---RWDDAE 456 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 456 (477)
.+|+.-+|++-+.+. .+..|...|..+...|...|+++.|.-.+++++=.+|.++..+..+++.+.-.| +..-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888999888877 667899999999999999999999999999999999999999999999977555 456688
Q ss_pred HHHHHHHhCCC
Q 042503 457 TLRMWMRENNV 467 (477)
Q Consensus 457 ~~~~~~~~~~~ 467 (477)
+++.+.++.+.
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888877654
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=5.9e-06 Score=58.90 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778888888888888887 44443 4677778888888899999999999999888888888889999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 042503 451 RWDDAETLRMWMRENN 466 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~ 466 (477)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999888877643
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.37 E-value=5.8e-07 Score=62.16 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 383 SGCVREAYDLIRSM-SIRP---NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777 2233 445566677888888888888888888 666666667777778888888888888888
Q ss_pred HHH
Q 042503 459 RMW 461 (477)
Q Consensus 459 ~~~ 461 (477)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=1.5e-05 Score=71.50 Aligned_cols=128 Identities=9% Similarity=0.055 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
......|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..... +.+...+..-...+.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34446777888888999999999999998888778888888888899999999999998764 55777777777888999
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI 398 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (477)
++++.|..+.+++.+. .|.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999842 245567999999999999999999999998844
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=4.2e-05 Score=59.27 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--hHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--LEHYGCM 376 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 376 (477)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+.. ....|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 44444444 4677888888888887764 333 23334455677788888888888888884 322222 1234456
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
...+...|++++|+..++.. +....+..+...+.++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888899988888776 32334456677788888899999998888875
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=1.8e-06 Score=57.17 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-RWDDAETLRMWMREN 465 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 465 (477)
+...|..++..+...|++++|+..|+++++.+|.++.++..++.+|.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988764
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.31 E-value=0.0017 Score=56.49 Aligned_cols=276 Identities=17% Similarity=0.175 Sum_probs=171.2
Q ss_pred cCChHHHHHHHHhcC---CCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCccc
Q 042503 179 KGDVDKGLYLFREMR---ERSVVSWNLMIS--SLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVD 249 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~ 249 (477)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-. .+.-...+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 344445554444332 133333333332 23346778888888887764 222222 2222334567777
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCce--eHHHHHHHHH---hcCCchHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVV--SWNAMISGLA---FNGRGELGV 319 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~a~ 319 (477)
.|.++-+..-..- |.-...+...+...+..|+++.|+++++.-.. +++. .-..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7777777766665 66677778888888888999998888876543 3332 1222222211 122344455
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--
Q 042503 320 ELYEQMIAKGVSPNKA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-- 396 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 396 (477)
..-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+ . .|.+..+.. ..+.+.|+. ++.-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-A--EPHPDIALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-c--CCChHHHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 44444433 355533 333456778899999999999999883 3 455544432 234455543 33333333
Q ss_pred --CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-cCCchHHHHHHHHHHhCCCccCCC
Q 042503 397 --SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE-GGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 397 --~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
..+||. .+...+..+....|++..|..--+.+.+..|. ...|..|+++-.. .|+-.++..++-+.+.. +.+|.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPa 397 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPA 397 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCc
Confidence 445554 67788888999999999999999999999996 7788899988765 49999999999887664 34444
Q ss_pred C
Q 042503 473 Q 473 (477)
Q Consensus 473 ~ 473 (477)
+
T Consensus 398 W 398 (531)
T COG3898 398 W 398 (531)
T ss_pred c
Confidence 3
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.9e-05 Score=68.52 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH-------------H
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH-------------Y 373 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 373 (477)
.++.-.|++++|...--...+.. ..+......-..++.-.++.+.+...|++... ..|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 34556788888888777766654 33333333333345566788888888887763 2333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRP-----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
..=..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.+++++++|.-...+..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11123345788999999999888 4444 45567677777788999999999999999999887888888888888
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 448 EGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
..++|++|.+.+++..+....+....+|
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 8999999999998887764444344333
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=2.6e-05 Score=58.21 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=74.1
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLL 409 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 409 (477)
++..++..+...|++++|...|..+.+...-.+ ....+..+..++.+.|++++|.+.|+++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888888774321111 1345666778888888888888888877 33333 45677778
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
.++...|+.++|...++++++..|.++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999888887665443
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.24 E-value=3.4e-06 Score=54.99 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..+...|++++|+..|+++++..|.++..+..++.++...|++++|..+++++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788889999999999999888888888999999999999999999888888765
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=2.4e-05 Score=62.74 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
...+..+...+...|++++|...|++. ...|+ ...+..++..+.+.|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666677777777777777766 22222 3467777777778888888888888888888877777777777
Q ss_pred HHHhcCC--------------chHHHHHHHHHHhC
Q 042503 445 IYAEGGR--------------WDDAETLRMWMREN 465 (477)
Q Consensus 445 ~~~~~g~--------------~~~A~~~~~~~~~~ 465 (477)
+|...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 7777666 45666666666554
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=1.7e-06 Score=48.19 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE 100 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 100 (477)
+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888863
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=8e-06 Score=73.52 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=90.0
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 416 (477)
.-...+...|+++.|+..|+++.+. .+.+...|..+..+|...|++++|+..++++ ...| +...|..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3355667889999999999999843 2556778888899999999999999999998 5555 5578888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
++++|+..|+++++++|.++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888777766664443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=1.8e-06 Score=47.70 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP 98 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 98 (477)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=1.6e-05 Score=66.14 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=60.5
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 421 (477)
+.+.+++++|+..|.++.+. .+-|...|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34456666666666666531 1334444555556666666666666665555 444443 4666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
++.|+++++++|++......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666555555444444433
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.3e-06 Score=46.13 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL 230 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 230 (477)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=3.7e-05 Score=61.39 Aligned_cols=113 Identities=12% Similarity=-0.033 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 042503 350 VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
+..+...+..+....+..-....|..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444322322333456677778888889999999998888 33333 34788889999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHH-------hcCCchHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYA-------EGGRWDDAETLRMWM 462 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 462 (477)
++++++..|.....+..++.++. +.|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999988888888888888 788888666555543
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=5e-06 Score=46.24 Aligned_cols=34 Identities=47% Similarity=0.721 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD 231 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 231 (477)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00083 Score=51.95 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWG 406 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~ 406 (477)
.|+...-..|..+....|+..+|...|++.. ..-+..|......+.++....+++..|...+++. ..+|+ +.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5666666667777777788888888887777 3445666677777777777777888887777776 11121 22334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+.+.+...|.+..|+..|+.+++..|. +.....++..+.+.|+.++|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566777788888888888888887774 67777777778888877777665555543
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.10 E-value=0.00023 Score=67.09 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=95.9
Q ss_pred CCceeHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLAFN-----GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 363 (477)
.+...|...+.+.... ++...|..+|++..+.. |-....+..+..++... .+...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 5667787777765432 23668888888888874 33444555444333221 2234444444443322
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
...+.+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|.+.++++..++|.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 223445567777777777789999999999888 66788888888889999999999999999999999987664
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.0001 Score=66.49 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=83.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 3455677899999999999999876 6678888888999999999999999999998432 456778888899999999
Q ss_pred CHHHHHHHHHhc-CCCCCHHHHHHHH
Q 042503 385 CVREAYDLIRSM-SIRPNAAIWGSLL 409 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 409 (477)
++++|+..|++. ...|+...+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998 6667665554444
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00064 Score=59.39 Aligned_cols=331 Identities=10% Similarity=-0.073 Sum_probs=170.1
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
+.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.+.-.+ .........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 44455566666666666665544 355555555556666666666544433322 11122223333444444444444
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHH-HHHhhccCcccchHHHHHHHHHhCCc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELDEATVVAV-LPICARLGAVDIGQWIHSYAESSGLY 264 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (477)
+.++ +...| ....++..++....... +|.-.++..+ ..++...|+.+.|.+.-..+.+..
T Consensus 138 ~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-- 199 (486)
T KOG0550|consen 138 EKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-- 199 (486)
T ss_pred HHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--
Confidence 4444 11111 11112222222221111 1322333322 234566777777777777777666
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCcee---------------HHHHHHHHHhcCCchHHHHHHHHHHHc-
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVS---------------WNAMISGLAFNGRGELGVELYEQMIAK- 328 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~m~~~- 328 (477)
+.+......-..++.-.++.+.|...|++...-++.. |..-.+-..+.|++..|.+.|.+.+..
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 4444433333344555677788888888776533322 122223345778888888888888763
Q ss_pred --CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH--
Q 042503 329 --GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-- 402 (477)
Q Consensus 329 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 402 (477)
++.|+...|.....+..+.|+..+|+.-.++..+ +.|. +..|..-..++...+++++|.+-|++. ....+.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 3455666677777777888888888888887773 1111 223333344566677888888888877 222222
Q ss_pred -HHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 042503 403 -AIWGSLLSSCRTHGHVE--LAEHAVKELINLEPWNSGNYVLLSNIYA---EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 -~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 464 (477)
.++.....++-+.++-+ ..+-+-+.+ .......+|..++-++. ..|.-.+|...|++.-+
T Consensus 357 r~~l~~A~~aLkkSkRkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 357 RRTLREAQLALKKSKRKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 33333333333322211 111111111 11112445655555543 34555777777776643
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=9.5e-05 Score=52.45 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH 415 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 415 (477)
..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34445555566666666666666532 1233345555666666666777777666665 2222 334666666677777
Q ss_pred CChHHHHHHHHHHHhcCC
Q 042503 416 GHVELAEHAVKELINLEP 433 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p 433 (477)
|+++.|...++++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766655
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.02 E-value=1.7e-05 Score=54.71 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++... .. +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555554311 123333334555555555555555555411 11 1122233333455555555555555
Q ss_pred HHHh
Q 042503 392 LIRS 395 (477)
Q Consensus 392 ~~~~ 395 (477)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=2.3e-05 Score=50.97 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 457888888899999999999999999999998764
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0014 Score=55.39 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+...|.+.|.+..|..-++.+++.-|.. +++...++.+|.+.|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 35567889999999999999999988765 45677888999999999999988876643
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.00025 Score=66.89 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=103.4
Q ss_pred cCCCCCHHHHHHHHHHhhc-----cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhc--------CCHHHHHHHH
Q 042503 328 KGVSPNKATFVGVLTCCAH-----AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRS--------GCVREAYDLI 393 (477)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 393 (477)
.+.+.|...|...+++... .++...|..+|+++.+. .|+ ...|..+..++... ++...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3446778888888877543 23478999999999853 344 44555544444322 1234455555
Q ss_pred Hhc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 394 RSM----SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 394 ~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
++. ....++..+..+.......|++++|...++++++++| +...|..++.++...|+.++|...+++....+ +.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-P~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-PG 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 553 2344567788887777788999999999999999999 58899999999999999999999999998765 33
Q ss_pred CCCCccC
Q 042503 470 SPGQSLI 476 (477)
Q Consensus 470 ~~~~s~~ 476 (477)
.|..-|.
T Consensus 486 ~pt~~~~ 492 (517)
T PRK10153 486 ENTLYWI 492 (517)
T ss_pred CchHHHH
Confidence 3444443
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=2.4e-05 Score=52.38 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=51.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
...|.+.++++.|.+++++++..+|.++..+...+.++.+.|++++|.+.+++.++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999999887653
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=8.5e-06 Score=53.70 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=40.9
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|++++|++.++++++.+|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888888888888887777766543
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=0.00028 Score=61.36 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=91.8
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTC-CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 46677777777777888888888887543 3334444444443 23356777788888888754 45677778888888
Q ss_pred HHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 380 LGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88888888888888888 333333 488888888888888888888888888877653
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.98 E-value=0.00032 Score=56.22 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=68.6
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN--KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
..+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555556666666666666666655432221 244555555666666666666666665531 122344444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 378 DVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.++...|+...+..-++.. ...+++|.++++++++.+|++ +..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555544433222211 112577888888888888865 4445554444443
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.011 Score=52.65 Aligned_cols=440 Identities=12% Similarity=0.078 Sum_probs=222.4
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccch------hHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHH--Hhc
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSN------LILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY--SLN 78 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~--~~~ 78 (477)
+.++++++++..+|..+.+..- .++ ...+.++++|.- ++.+.....+....+ | ...|-.+..++ .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 3578999999999999987752 222 234456676654 566666666555544 3 44566666554 578
Q ss_pred CCCchHHHHHHHHHhC--CCCCC------------cccHHHHHHHhhccCCchhHHHHHHHHHHhccc----CcchHHHH
Q 042503 79 GPSEEPVKLFALLKNL--GIWPD------------EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE----RFGSIRIG 140 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~--~~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 140 (477)
+++.+|.+.+...... +-.|. ..-=+..+..++..|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999998877664 22221 111123456677888888888888888765444 56777777
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhc--CChhHHHH
Q 042503 141 VVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKS--GRDSEALR 218 (477)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~ 218 (477)
++-.+.+.=-. ++-+.+...=...|..++-.|.+.=..-++.. +++. -|.......++....-. .+..--.+
T Consensus 173 ~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 173 AVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 65555433111 11111111111123344444433211111100 0000 01111112222211111 11222233
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHhhccCcccchHHHHHHHHHhCCc---cchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 219 LFHEMRDQAFELDEATVV-AVLPICARLGAVDIGQWIHSYAESSGLY---RKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+++.....-+.|+..... .+...+.. +.+.+..+.+.+....+. ..-...+..++....+.++...|...+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444455533322 22222222 333333333333222210 223344556666667777777776665543
Q ss_pred C--CCCcee-------HHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHH---HHhhcccc-HHHHHHHH
Q 042503 295 P--RKNVVS-------WNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVL---TCCAHAGL-VEKARELF 357 (477)
Q Consensus 295 ~--~~~~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~ 357 (477)
. +|+... -..+-+..+. .-+..+-+.+|+......+.. ......++ .-+.+.|. -++|+.++
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3 232221 1111122221 112233344555555543221 11112222 23444554 77888888
Q ss_pred HHhhhccCCCCChHHHHHHH----HHHHhc---CCHHHH---HHHHHhcCCCCC----HHHHHHHHHH--HHHcCChHHH
Q 042503 358 ASMTGLHSIVPNLEHYGCMV----DVLGRS---GCVREA---YDLIRSMSIRPN----AAIWGSLLSS--CRTHGHVELA 421 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A---~~~~~~~~~~p~----~~~~~~l~~~--~~~~~~~~~a 421 (477)
+.+.+ . -+-|..+-|... ..|.+. ..+.+- ....++.|+.|- ...-|.+..+ +..+|++.++
T Consensus 404 k~il~-f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 404 KLILQ-F-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHH-h-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 88874 2 123333333222 222221 222222 233344466553 3455555544 5678999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.-.-.-+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888888888889 79999999999999999999999997663
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.017 Score=54.39 Aligned_cols=248 Identities=13% Similarity=0.043 Sum_probs=133.5
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhC-CCCCCcc--cHHH--H--HHHhhccCCchhHHH
Q 042503 49 EIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-GIWPDEY--TFAP--L--LKACLGVGDLRVGQC 121 (477)
Q Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~--~~~~--l--~~~~~~~~~~~~a~~ 121 (477)
.+++|.+..+. .|.+..|..+...-...-.++.|...|-+.... |++.-.. +..+ + ...-+--|++++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 35666666553 256677887777777666777777766655542 2211000 0000 0 011122367777777
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 042503 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERS 196 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 196 (477)
++-++-+.+ ..+..+.+.|++-.+.++++.-.. .-...|+.+...+.....+++|.+.|......
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~- 825 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT- 825 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 776554433 235556667777777766665332 11245677777777777777777777654321
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+.++.+..++++-..+-.. ++-+....-.+...+.+.|.-++|.+.+-+ .+. | .+-+.
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~--p-----kaAv~ 886 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL--P-----KAAVH 886 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC--c-----HHHHH
Confidence 1234444444444444333332 244555555666677777766666555432 121 1 34455
Q ss_pred HHHhcCChHHHHHHhccCCCCCceeHHH--------------HHHHHHhcCCchHHHHHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRKNVVSWNA--------------MISGLAFNGRGELGVELYEQMIA 327 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~~ 327 (477)
.+...+++.+|.++-++..-|.+.+.-+ -|..+.+.|++-.|.+++.+|.+
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6667777777777766655444332211 12334455666666667666654
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.94 E-value=0.00017 Score=55.14 Aligned_cols=88 Identities=13% Similarity=-0.032 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 377 VDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
..-+...|++++|..+|+-+ -..-+..-|..|..++...+++++|+..|..+..++++||..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455788899998888887 2234556677888888888999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHh
Q 042503 455 AETLRMWMRE 464 (477)
Q Consensus 455 A~~~~~~~~~ 464 (477)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998888776
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.023 Score=55.10 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=134.5
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHH--HhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchH
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSV--CGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEP 84 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 84 (477)
..++++..|..-...+.+.. |+. .+...+.+ +.+.|+.++|..+++.... .|..+...+-..|-..++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35678888888888888775 332 33333443 4578999999988887654 4666788888888889999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC----------ChhhH
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG----------QMDDG 154 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A 154 (477)
..+|+..... -|+..-...+..++++.+++.+-.++-=++.+. ++-+...+=+++..+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988874 477777777888888888877655554444443 2324444444454444321 12345
Q ss_pred HHHhcccCCCc--hH---HhHHHHHHHHhcCChHHHHHHHHhc-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 155 MKVFDEMSHRD--VI---VRNLMIHGFCKKGDVDKGLYLFREM-----RERSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 155 ~~~~~~~~~~~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
.+.++.+.+.+ .. -.......+...|++++|.+++..- ...+...-+.-+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666555422 11 1112233445678888888888332 22333344455666777788888888777777
Q ss_pred HcC
Q 042503 225 DQA 227 (477)
Q Consensus 225 ~~~ 227 (477)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 765
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=5.5e-05 Score=63.11 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
.-+.+.+++++|+..|.+. .+.|+ ...|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456788999999999998 66664 566777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
++.|++.++..
T Consensus 169 ~~aykKaLeld 179 (304)
T KOG0553|consen 169 IEAYKKALELD 179 (304)
T ss_pred HHHHHhhhccC
Confidence 99998887653
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00031 Score=61.07 Aligned_cols=129 Identities=10% Similarity=0.068 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR-SGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
.+|..++...-+.+..+.|..+|.++.+.. ..+..+|......-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888899999999999999998433 2344555555555334 56777799999998 556677889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+...|+.+.|..+|++++..-|.+. ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58999999999999999999999988764
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.87 E-value=0.015 Score=51.32 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTH 415 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 415 (477)
+.+..+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-.++... +-++..|...+.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 44555666777888888888776665 58888999999999999999988876553 33457788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
|+..+|..+..++ .+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888771 1256778889999999987763
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.018 Score=50.72 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=67.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+.+. .. ++..|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHCCCHHH
Confidence 3344555666777777777777667777777777777777777766554322 11 23556667777777777777
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777666532 123456677777777776665443
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.83 E-value=0.021 Score=51.01 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHH-HHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHS-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIW-GSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 411 (477)
..|...+....+...++.|..+|-+..+ .+ ..+++..+++++..++ .|+..-|.++|+-. ..-||...| ...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455666666677778888888888884 44 5677777888777554 56777888888765 334555443 556666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 412 CRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+...++-+.|..+|+..+..-..+ ..+|..++..-..-|+...+..+-+++.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777888888888888665433222 56788888888888888777777666654
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00062 Score=54.33 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLS 410 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 410 (477)
...+..+...+...|++++|+..|++......-++ ...++..+...|...|++++|+..+++. ...|+ ...+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34455556666667777777777777753221111 1246666777777777777777777776 33333 344555555
Q ss_pred HHH-------HcCChH-------HHHHHHHHHHhcCCC
Q 042503 411 SCR-------THGHVE-------LAEHAVKELINLEPW 434 (477)
Q Consensus 411 ~~~-------~~~~~~-------~a~~~~~~~~~~~p~ 434 (477)
.+. ..|+++ +|..++++++..+|.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 555 666766 445555556666664
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=3.5e-05 Score=50.71 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
.|++++|++.|+++ ...| +...+..++.+|.+.|++++|.++++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444 1122 33444444444445555555555555544444443
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00022 Score=60.77 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=38.8
Q ss_pred hccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCCh
Q 042503 345 AHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~ 418 (477)
.+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555543221100 0123334444455555555555555444 11121 23333344444445555
Q ss_pred HHHHHHHHHHHhcCCC
Q 042503 419 ELAEHAVKELINLEPW 434 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~ 434 (477)
+.|..+|+++++..|.
T Consensus 234 ~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 234 AKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555555444
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=8.2e-05 Score=49.08 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHG-HVELAEHAVKELINLEP 433 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 433 (477)
+...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888888888888888887 44454 468888888888888 79999999999988887
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0019 Score=56.38 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVS-----PNKA-TFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+...+.+.|++++|..+|++....-.. .+.. .|...+-++...||+..|...+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455556666666666666665543211 1111 12223334455566666666666654
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=2.3e-05 Score=42.03 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhCC
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (477)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.038 Score=52.59 Aligned_cols=352 Identities=13% Similarity=0.087 Sum_probs=181.7
Q ss_pred HHHHhcCCCchHHHHHHHHH--------hCCCCCCcccHHH-----HHHHhhccCCchhHHHHHHHHHHhcccCcchHHH
Q 042503 73 KAYSLNGPSEEPVKLFALLK--------NLGIWPDEYTFAP-----LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
.++.+..++++-..+.+.+. .-|++.+..-|.. ++.-+...+.+..|.++-..+...-.. ...+|.
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~ 475 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL 475 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence 34445556666555555443 2356666555554 345556667777777776655321111 145566
Q ss_pred HHHHHHHhcC---ChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC--------ChhhHHHHHHH
Q 042503 140 GVVELYTSCG---QMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER--------SVVSWNLMISS 206 (477)
Q Consensus 140 ~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~ 206 (477)
....-+.+.. +-+-+..+-+++.. .+...|..+.+-....|+.+-|..+++.=+.. +..-+..-+.-
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 6666555552 22223333333333 34455666666667777777777777654431 22234444455
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
....|+.+-...++-++...- +...|...+ .+.-.|..++.+..+..- . ..+-..|- .++-..
T Consensus 556 aies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~-~------~~l~d~y~-q~dn~~ 618 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQD-R------ATLYDFYN-QDDNHQ 618 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhc-h------hhhhhhhh-cccchh
Confidence 555666666665555554321 111111111 112222333333322111 0 01111121 222222
Q ss_pred HHHHhc--cCC-----CCCceeHHHHHHHHHhcCCch----------HHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccc
Q 042503 287 ARNVFK--EIP-----RKNVVSWNAMISGLAFNGRGE----------LGVELYEQMIA-KGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 287 a~~~~~--~~~-----~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~ 348 (477)
+...|. ... .+-.........++.+..... +-+.+.+.+.. .|......+.+--+.-+...|
T Consensus 619 ~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g 698 (829)
T KOG2280|consen 619 ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIG 698 (829)
T ss_pred hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHcc
Confidence 221111 100 111122233334444433211 11122222222 222333334455555666778
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+.-|.....+|.+.|+.++|..+.-+.
T Consensus 699 ~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 699 QNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred chHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 8888888877776 5888888888888999999988888777663 2455666888899999999888876553
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 429 INLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
-.+ .....+|.+.|++.+|.++
T Consensus 771 ~~l--------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 771 GGL--------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCh--------HHHHHHHHHhccHHHHHHH
Confidence 211 1577888888888888765
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00023 Score=64.26 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=71.1
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC-C-----CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-P-----SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA 104 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (477)
+.+......+++.+....+++.+..++-+.+. | -..+..++++.|...|..+.++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34445555556666666666666666555443 1 12234566667777777777777766666667777777777
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhc
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSC 148 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (477)
.|+..+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777766666666655555555555444444444
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.00087 Score=49.18 Aligned_cols=86 Identities=21% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW---NSGNYVLLSNIYAE 448 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (477)
..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666555 22222 234455556666666666666666666665555 44455555566666
Q ss_pred cCCchHHHHHHHHH
Q 042503 449 GGRWDDAETLRMWM 462 (477)
Q Consensus 449 ~g~~~~A~~~~~~~ 462 (477)
.|+.++|+..+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666665443
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.00053 Score=52.21 Aligned_cols=90 Identities=13% Similarity=0.005 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
-.+...+...|++++|..+|+.+.... +-+..-|..+.-++...|++++|...+..+.... +.++..+..+..++..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHH
Confidence 334444555556666666655554432 2223333344444444555555555555555554 4555555555555555
Q ss_pred cCChHHHHHHhcc
Q 042503 281 CGILDTARNVFKE 293 (477)
Q Consensus 281 ~~~~~~a~~~~~~ 293 (477)
.|+.+.|++.|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555443
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.8e-05 Score=40.76 Aligned_cols=31 Identities=42% Similarity=0.663 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAF 228 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 228 (477)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.0079 Score=50.97 Aligned_cols=77 Identities=14% Similarity=0.046 Sum_probs=49.0
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccH----HHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHH
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTF----APLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
++..+-.....+.+.|++++|.+.|+.+... .|+.... -.+..++.+.++++.|...++..++..+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4444444555667788888888888888874 3433221 345566778888888888888888865543333333
Q ss_pred HHH
Q 042503 140 GVV 142 (477)
Q Consensus 140 ~l~ 142 (477)
..+
T Consensus 109 ~Y~ 111 (243)
T PRK10866 109 LYM 111 (243)
T ss_pred HHH
Confidence 333
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0043 Score=48.17 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=101.6
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM 376 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (477)
|.+..--.+..++...|+..+|...|.+...--..-|......+.++....+++..|...++.+.+...-.-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55556667888889999999999999998876566788888888888889999999999999887533222234455667
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+.|...|+.++|..-|+.. ..-|+...-......+.++|+..++..-+..+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88899999999999999888 6677776655566667788877766655554443
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0038 Score=54.54 Aligned_cols=204 Identities=13% Similarity=0.151 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCC-----cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPD-----EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
.....|-..|++++|.+.|.+..+.-...+ ...|......+ +..++++|...++.. +..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~~~ 103 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------IEI 103 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------HHH
Confidence 445566677777777777766643211000 11122222222 222555555554443 344
Q ss_pred HHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhc-CChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCChh
Q 042503 145 YTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK-GDVDKGLYLFREMRE-----RS----VVSWNLMISSLGKSGRDS 214 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 214 (477)
|...|++..|-+.+. .+...|... |++++|++.|++..+ .. ...+..++..+.+.|+++
T Consensus 104 y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 104 YREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 556666655544333 344455555 666777666666543 11 224566777788888888
Q ss_pred HHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhhccCcccchHHHHHHHHHhCC---ccchhHHHHHHHHHHHhc--CC
Q 042503 215 EALRLFHEMRDQAFE-----LDEA-TVVAVLPICARLGAVDIGQWIHSYAESSGL---YRKVVSVGNALVDFYCKC--GI 283 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~--~~ 283 (477)
+|..+|++....... ++.. .|...+-++...||...|...++....... ......+...|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 888888887654322 1221 222333345556777777777776664431 012233334455555432 34
Q ss_pred hHHHHHHhccCCCCCce
Q 042503 284 LDTARNVFKEIPRKNVV 300 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~~~ 300 (477)
+..+..-|+.+.+-|..
T Consensus 253 f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 253 FTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHCHHHTTSS---HH
T ss_pred HHHHHHHHcccCccHHH
Confidence 55566666666555543
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.70 E-value=0.00042 Score=53.83 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR-----ENNVKKSPG 472 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 472 (477)
.....++..+...|++++|...+++++..+|.+...|..++.+|.+.|+..+|.+.++++. +.|++|+|.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3556677788899999999999999999999999999999999999999999999998874 358777764
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.68 E-value=0.00029 Score=49.58 Aligned_cols=79 Identities=18% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhCCC-CCCcccHHHHHHHhhccC--------CchhHHHHHHHHHHhcccCcchHHH
Q 042503 69 NSMIKAYSLNGPSEEPVKLFALLKNLGI-WPDEYTFAPLLKACLGVG--------DLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999998 899999999998876543 2335678889999999999999999
Q ss_pred HHHHHHHh
Q 042503 140 GVVELYTS 147 (477)
Q Consensus 140 ~l~~~~~~ 147 (477)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887654
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=3.5e-05 Score=42.02 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
.|+++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.0012 Score=48.47 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc---hhHHHHHHHHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK---VVSVGNALVDF 277 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 277 (477)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++...... |. +..+...+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45566677888888888888777765544 2234445556666677777777776666553 22 33333334445
Q ss_pred HHhcCChHHHHHHhccCCC
Q 042503 278 YCKCGILDTARNVFKEIPR 296 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~ 296 (477)
+...|+.++|.+.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5556666666655544333
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00012 Score=43.03 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.++..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999888764
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.00055 Score=59.75 Aligned_cols=129 Identities=11% Similarity=-0.075 Sum_probs=87.4
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhh---hccCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CC-CCCHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMT---GLHSIV-PNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SI-RPNAA 403 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 403 (477)
.|..|...|.-.|+++.|+...+.-. +.+|-. .....+..|..++.-.|+++.|.+.|+.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666677788888876654321 123322 22346677888888888888888888765 21 22334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL----E--PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+..+|...|.-..++++|+.+..+-+.+ + ....+++.+|+.++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667778888888888888887776533 2 23466888889999999999998888776544
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.028 Score=52.97 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=32.5
Q ss_pred cCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 042503 132 ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197 (477)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 197 (477)
+.+....-.+.+++.+.|.-++|.+.+-+...|.. -+..|...+++.+|.++-++..-|.+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHhccchhH
Confidence 33455555566666666666666665555444432 23344555556666655555444433
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0035 Score=56.92 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHH
Q 042503 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAI 404 (477)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~ 404 (477)
+.+.+......+++.+....+.+.+..++.+.+.... ...-..+..++++.|.+.|..++++++++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4456666777777777777777777777777764211 1122334557777788888888887777664 77778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhc
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 449 (477)
++.++..+.+.|++..|.++...+...+ ..++.++..-+.++.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888777777665433 44455555544444444
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0019 Score=52.92 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=99.4
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC----CCCChHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS----IVPNLEHYGC 375 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ 375 (477)
..-+.++..+.-.|.+.-.+..+++.++...+.++.....+++.-.+.||.+.|...|+...+..+ ..-...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566777777888888899999999887677788888899999999999999999997764322 2222223333
Q ss_pred HHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
....|.-++++.+|.+.+.++ ..+.|+...|.-.-+..-.|+...|++.++.++...|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 444566778889999999888 223345555555556667889999999999999888863
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0026 Score=54.35 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLS 443 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 443 (477)
.|......+.+.|++++|+..|+.+ ...|+. ..+..++.+|...|++++|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445668888888888887 444443 466677788888888888888888888777664 44556667
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++...|++++|..+++++++.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77888888888888888887653
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.52 E-value=0.011 Score=55.01 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (477)
..+.+=+-.|...|.+++|.++---- .....|..|.......=+++-|.+.|.+... -.+-+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------l~~L~ 618 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLG--VTDTDWRELAMEALEALDFETARKAYIRVRD----------------LRYLE 618 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhc----------------cHHHH
Confidence 33444445566777777776542211 1122344444433333344444444333221 12334
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
.+.-++++++.|-.|+.... ...|+-.|.+.+|.++|.+--.. +.-+++|.....++.|.+++....
T Consensus 619 li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE----------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch----------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 45556777777777776433 44556677777777776543211 234555555555666665554432
Q ss_pred C--------------CCceeHHHHHHHHHhcCCchHHHHHHHH------HHHcCC---CCCHHHHHHHHHHhhccccHHH
Q 042503 296 R--------------KNVVSWNAMISGLAFNGRGELGVELYEQ------MIAKGV---SPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 296 ~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
. .++.--.+....+...|+.++|..+.-+ +.+.+- ..+..+...+...+-+...+..
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 1 1111112333445556666666554321 122111 2234455555555556667777
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH-----------HHHHHHHHHHcCChHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI-----------WGSLLSSCRTHGHVEL 420 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-----------~~~l~~~~~~~~~~~~ 420 (477)
|-++|.+|-. ...+++.....+++++|.++-++. ...||... |...-.+|.+.|+..+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 8888877752 123677788889999999988887 44554321 2222334555556666
Q ss_pred HHHHHHHHH
Q 042503 421 AEHAVKELI 429 (477)
Q Consensus 421 a~~~~~~~~ 429 (477)
|.++++++-
T Consensus 836 A~~vLeQLt 844 (1081)
T KOG1538|consen 836 AVQVLEQLT 844 (1081)
T ss_pred HHHHHHHhh
Confidence 666655553
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0095 Score=50.45 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhc-C
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---GCVREAYDLIRSM-S 397 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 397 (477)
++.-...+ +-|...|..|..+|...|+...|...|.+..+.. ++++..+..+..++..+ ....++..+|+++ .
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33333444 7788999999999999999999999999998544 45666676676665533 2567889999998 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 398 IRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 398 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+| |......+...+...|++.+|...|+.+++..|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 455 556777788889999999999999999999998654
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.0014 Score=57.35 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=78.7
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHH----HHcCCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhh----hccCCCCChH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQM----IAKGVS-PNKATFVGVLTCCAHAGLVEKARELFASMT----GLHSIVPNLE 371 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 371 (477)
.|..+...|.-.|+++.|+..-+.= .+.|-+ .....+..+..++.-.|+++.|.+.|+... +...-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555667777776554332 122211 123356667777777788888877776543 1111123344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM--------SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
+..+|...|.-...+++|+.++++- ...-....+.+|..++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777788887776654 1122345677788888888888888877776654
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00062 Score=61.07 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA----IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++..+. .|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 445678889999999999999999999987 7777753 5888999999999999999999999987422 2221
Q ss_pred HHH--HHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 442 LSN--IYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 442 l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
+.. .+....+..+..++++.+..-|.+..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 111 12233455677788888887776443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.0071 Score=49.86 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 456 (477)
++..|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56678899999999999999999998864 45778888999999988554
No 211
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0022 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccc--------cHHHHHHHHHHhhhccCCCCChHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAG--------LVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
...|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. .....+.+++.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3345556666888888888888888888 788888888888766432 3445667777777 46777888888
Q ss_pred HHHHHHHHh
Q 042503 374 GCMVDVLGR 382 (477)
Q Consensus 374 ~~l~~~~~~ 382 (477)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766554
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.40 E-value=0.00083 Score=44.80 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
..|.+.+++++|.++++++ ...| ++..+...+.++.+.|++++|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888888 4444 4467777888888999999999999999998887665443
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.40 E-value=0.12 Score=48.34 Aligned_cols=183 Identities=15% Similarity=0.097 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN---VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
+.....|...+..-...|+.+.+.-.|++..-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4455667777788888889888888888877642 2345555554555588888887777766644333332222222
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHhc-CCCCCHHHHHHHHHH-----
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVREAY---DLIRSM-SIRPNAAIWGSLLSS----- 411 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~----- 411 (477)
.-+-..|++..|..+++.+.+.. |+. ..-..-+....+.|..+.+. .++... ..+.+..+...+.--
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 22445789999999999998532 443 22233345566788888887 444433 223333333333222
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 334689999999999999999999999999988876555
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.0014 Score=52.42 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCceeHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----------------ccHHHHH
Q 042503 296 RKNVVSWNAMISGLAF-----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA----------------GLVEKAR 354 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 354 (477)
..+-.+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++++=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3566667777777664 467777888899999999999999999999987642 2345566
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
+++++|. ..|+.||.+++..+++.+++.+
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhcccc
Confidence 7777776 5677777777777777666554
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.34 E-value=0.00037 Score=47.27 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLE----PWN---SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+++.+...|...|++++|+..++++++.. +.+ ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777888888888888888776532 221 44677788888888888888888877654
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0048 Score=54.28 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
..+++.+..+|.+.+++.+|++..++. . .++|...+..-..++...|+++.|+..|+++++++|.|..+-..++.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346788899999999999999999888 3 35667788888999999999999999999999999999999999998887
Q ss_pred hcCCchH-HHHHHHHHHhC
Q 042503 448 EGGRWDD-AETLRMWMREN 465 (477)
Q Consensus 448 ~~g~~~~-A~~~~~~~~~~ 465 (477)
+.....+ ..++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7766555 47888888764
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.028 Score=46.44 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=69.1
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCCHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--------SIRPNAAIWGSLL 409 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 409 (477)
+.++.++.-.|.+.-....+.+..+ ...+.++.....|+..-.+.|+.+.|...|++. +..-+........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4445555555556666666666653 333444455555555556666666666666533 2222222333333
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+.-++++..|...+.++...+|.++...+.=+-++.-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556666666666666666666665555555555556666666666666554
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.042 Score=51.42 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHh
Q 042503 182 VDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESS 261 (477)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (477)
.+-+.++-.++...+..+...+...+.+...+.-|-++|..|-+. ..+++.....++|.+|..+-+...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 333444444444444444444444445555555566666555321 233344444555555444433221
Q ss_pred CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 042503 262 GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328 (477)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 328 (477)
..-+.+|-...+.++...++++|. .+|.+.|+..+|..+++++...
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAq------------------kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQ------------------KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHH------------------HHHHHhcchHHHHHHHHHhhhh
Confidence 112222333444444444544444 3456677777888887777554
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.27 E-value=0.00064 Score=46.08 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-----SI---RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.+++.+...|...|++++|+..|++. .. .|+ ..++..++.++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666777777777777777777666 11 122 346777888888888888888888887654
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.2 Score=48.66 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=112.2
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRNPSV---LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG 112 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 112 (477)
....-+..+.+...++.|+.+-+.-..+.. .....-.+.+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 345567777788888888888775443211 23334445667889999999888766543 233 334556666
Q ss_pred cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCch-HHhHHHHHHHHhcCChHHHHHHHHh
Q 042503 113 VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDV-IVRNLMIHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (477)
......-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..+...+... .-....+..+.+.+-.++|.-+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 66677777788888888877 666777899999999999999888887763111 1123444555555555555555444
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042503 192 MRERSVVSWNLMISSLGKSGRDSEALRLFHEM 223 (477)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 223 (477)
... +.. .+--.+-..|++++|++++..+
T Consensus 489 ~~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 333 122 2222334467778887777654
No 221
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.20 E-value=0.26 Score=48.31 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+..-.+.++++.+...+..| ..+-...-..=+.+++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555555 11112222222334444455555555555554
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.055 Score=48.28 Aligned_cols=162 Identities=15% Similarity=0.059 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC-------CceeHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRK-------NVVSWNAMISGLAF---NGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
..++-.|....+++..+++.+.+... ....-....-++.+ .|+.++|..++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555566777777777777766552 11112233445555 788888888888866655577888887777
Q ss_pred HHhhc---------cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC-HH---HHHHHH---Hhc----C---C
Q 042503 342 TCCAH---------AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC-VR---EAYDLI---RSM----S---I 398 (477)
Q Consensus 342 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~----~---~ 398 (477)
..|-. ....++|+..|.+.-+ +.|+..+--.++-.+.-.|. ++ +..++- ... + .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66531 2346778888876653 23443322222222222332 11 222222 111 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..+--.+.+++.++.-.|+.++|.+.++++.++.|+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 23444567788889999999999999999999987643
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.0022 Score=51.44 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHh-----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc-------------
Q 042503 54 TKIFNQM--RNPSVLLFNSMIKAYSL-----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV------------- 113 (477)
Q Consensus 54 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------------- 113 (477)
...|+.. ...+-.+|..+++.+.+ .|..+=....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3344444 33666677777777754 355666667777888888888888888888877542
Q ss_pred ---CCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCC
Q 042503 114 ---GDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQ 150 (477)
Q Consensus 114 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (477)
.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678889999999999999999988888866654
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.03 Score=46.19 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCc-----------------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 417 HVELAEHAVKELINLEPWNSG-----------------NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
...+|...++.+++..|+++. .-..+++.|.+.|.+..|..-++.+++.
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345666667777777776632 2334678899999999999999999875
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.13 E-value=0.022 Score=42.75 Aligned_cols=89 Identities=17% Similarity=0.079 Sum_probs=60.8
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-HHHHHHH--HHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM----SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN-YVLLSNI--YAE 448 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~~ 448 (477)
.....+.|++++|.+.|+.+ +. .-....-..++.+|.+.|+++.|...+++.+++.|.++.+ |..+..+ +.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778888888888887 11 1223456677888889999999999999999999887663 3333333 334
Q ss_pred cCC---------------chHHHHHHHHHHhC
Q 042503 449 GGR---------------WDDAETLRMWMREN 465 (477)
Q Consensus 449 ~g~---------------~~~A~~~~~~~~~~ 465 (477)
... ..+|..-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 56777777777764
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.06 E-value=0.0057 Score=55.12 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.+...++.+..+|...|++++|+..|++..+. .|+. ..|..+..+|...|++++|+..+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556778888899999999999999999988753 4543 35888899999999999999999887
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.0068 Score=50.60 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC-CHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN---LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP-NAAIWGS 407 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 407 (477)
.|+.-+.. .+.|++..|...|....+.+ +-+ ...+-.|..++...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34444433 34455666666666555321 111 123334555555555555555555554 1111 2244555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+..+..+.|+.++|...|+++.+..|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555555555555555555433
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.95 E-value=0.24 Score=43.68 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=132.6
Q ss_pred HHHHHHHhh--ccCCchhHHHHHHHHHHhcccCcchHHHHHHHH--HHhcCChhhHHHHhcccCC-CchHH--hHHHHHH
Q 042503 103 FAPLLKACL--GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL--YTSCGQMDDGMKVFDEMSH-RDVIV--RNLMIHG 175 (477)
Q Consensus 103 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~ 175 (477)
|..|-.+++ ..|+-..|.+.-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.+ |.... ...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 445555543 345666666555443321 22333333334433 3345888888888888876 33221 1222333
Q ss_pred HHhcCChHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHhhc---cC
Q 042503 176 FCKKGDVDKGLYLFREMRE--RS-VVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEAT--VVAVLPICAR---LG 246 (477)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~l~~~~~~---~~ 246 (477)
..+.|+.+.|.+.-+.... |. .-.+...+...+..|+|+.|+++++.-.... +.++..- -..++.+-+. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3457788887777776654 32 2366778888888999999998888765432 3333321 1122222111 12
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
+...|...-.+..+.. |+-...-..-..++++.|+..++-.+++.+-+ |.+..+. +-.+.+.|+. +..-+++
T Consensus 244 dp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHH
Confidence 3333444443443333 22222223334455555555555555555543 2222221 1112233322 2222222
Q ss_pred HHH-cCC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhc
Q 042503 325 MIA-KGV-SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVREAYDLIRSM 396 (477)
Q Consensus 325 m~~-~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 396 (477)
... ..+ +.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+-+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 211 011 22334444444455555555554443333321 2344444444444332 225555555555444
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.91 E-value=0.041 Score=40.21 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=89.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
.-.|..++..++..+..... +..-+|+++--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34678888888888877643 56667777766666666666677777665322221 23333333
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 390 YDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 390 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
..-+-.+ ..+....+..+.+...+|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-+.|++
T Consensus 76 i~C~~~~--n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKR--NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHT--T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333333 2345566777888899999999999999998766667999999999999999999999999999999875
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.90 E-value=0.2 Score=41.79 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHhcCCchHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----
Q 042503 309 LAFNGRGELGVELYEQMIAKG--VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR---- 382 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 382 (477)
-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++....++-.||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 445566666666666666531 122344455555666666666666666666665555555542 2222222221
Q ss_pred ---cCCHHHHHHHHHhc----CC------CCCHHH------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-
Q 042503 383 ---SGCVREAYDLIRSM----SI------RPNAAI------------WGSLLSSCRTHGHVELAEHAVKELINLEPWNS- 436 (477)
Q Consensus 383 ---~g~~~~A~~~~~~~----~~------~p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~- 436 (477)
..+...+.+.|..+ .. .||... =..+.+.|.+.|.+..|..-++++++.-|+.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 12222233333222 11 222211 12345668899999999999999998876554
Q ss_pred --chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 437 --GNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 437 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
..+..+..+|...|-.++|.+.-+- +..+.+.++
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s~ 238 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKV-LGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCCc
Confidence 4566777889999999999776544 445544443
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0099 Score=52.37 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..++..+..++.+.+++..|++...++++++|.|..+++.-+.+|...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34677888899999999999999999999999999999999999999999999999999998764
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.82 E-value=0.45 Score=44.65 Aligned_cols=137 Identities=7% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGV 141 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (477)
.+...|+.++.---.....+.+..++..+... .|... -|......-.+.|..+.+.++|++.+.. ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 44556777776555555556667777777653 34443 3444444456778888888888887764 45566677666
Q ss_pred HHHHH-hcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHH
Q 042503 142 VELYT-SCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNL 202 (477)
Q Consensus 142 ~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (477)
...+. ..|+.+.....|+.... .....|...+.--..++++.....+++++.+-....|+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 65444 34666667777776654 344556666666666777777777777776644443333
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.75 E-value=0.025 Score=41.15 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=41.1
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHHcCC
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP--NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~ 417 (477)
....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|+.-+++. +-+- --..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4445555555555555542 12334445555555555555555555555444 1110 01223333334445555
Q ss_pred hHHHHHHHHHHHhcCC
Q 042503 418 VELAEHAVKELINLEP 433 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p 433 (477)
.+.|..-|+.+-+++.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 5555555555555543
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.22 Score=42.33 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=100.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV 386 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (477)
......|++.+|..+|+...... +-+......+..++...|+.+.|..++..+.... -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888888764 4445666778888889999999999988776311 111111112234445555555
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 387 REAYDLIRSMSIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 387 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..++..+.-.|.-+.+...+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555553345 66777778888888999999988888777654 556777888888888888555544333
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.02 Score=47.91 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLS 443 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 443 (477)
.|+.-+. +.+.|++.+|...|... ..-| ....+.-|+.++...|+++.|..+|..+.+..|.+ |+.+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444433 34556677777777766 1112 12234446677777777777777777777666544 45566677
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 042503 444 NIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
....+.|+.++|...|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.77 Score=44.29 Aligned_cols=315 Identities=11% Similarity=0.003 Sum_probs=177.2
Q ss_pred hcccCcchHHH-----HHHHHHHhcCChhhHHHHhcccCCCc---hHHhHHHHHHHHhcC---ChHHHHHHHHhcCC--C
Q 042503 129 SGFERFGSIRI-----GVVELYTSCGQMDDGMKVFDEMSHRD---VIVRNLMIHGFCKKG---DVDKGLYLFREMRE--R 195 (477)
Q Consensus 129 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~--~ 195 (477)
.|++.+..-|. .+++-+...+.+..|.++-..+..|. ..++.....-+.+.. +.+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45665555554 35566777889999999988887765 556666666666653 33334444455554 4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF----ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVG 271 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (477)
....|...+......|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+.+.-.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~-------- 577 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN-------- 577 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH--------
Confidence 556788888888889999999888764221110 01222344455556666777666666555544321
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-CCceeHHHHHHHHHhcCCchHHHH-HHHHHHHc-CCCCCHHHHHHHHHHhhccc
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPR-KNVVSWNAMISGLAFNGRGELGVE-LYEQMIAK-GVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~-~~~~~~~~~~~l~~~~~~~~ 348 (477)
....+....+...|..+|.+..+ .|..+ +-+.|.+..+...+-. .++...+. -+.+-..........|.+..
T Consensus 578 --~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk 652 (829)
T KOG2280|consen 578 --RSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSK 652 (829)
T ss_pred --HHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhh
Confidence 01111112223334444443332 11111 1111222222221111 11111110 01122222333344444433
Q ss_pred c----------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 042503 349 L----------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 349 ~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (477)
. ..+-+.+.+.+..+.+.....-+.+--+.-+...|+..+|.++-++.. -||-..|.--+.++...+++
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhH
Confidence 3 122233333444344433444455555667778899999999999986 46777888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
++-+++-+.. . +|--|.-...++.+.|+.++|.+++-+.
T Consensus 732 eeLekfAksk---k--sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 732 EELEKFAKSK---K--SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHHhcc---C--CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 8877665442 2 2667888999999999999999988655
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.55 E-value=0.23 Score=44.45 Aligned_cols=163 Identities=12% Similarity=-0.007 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---cccHHHHHHHHHHhhhccCCCCChHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKG---VSPNKATFVGVLTCCAH---AGLVEKARELFASMTGLHSIVPNLEHYGC 375 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (477)
.-.++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|++++..+.. ..-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHH
Confidence 3345556888999999999999998752 11122222234445566 8999999999999552 445778888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChH----HHHHHH---HH-HHhcC----C
Q 042503 376 MVDVLGR---------SGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVE----LAEHAV---KE-LINLE----P 433 (477)
Q Consensus 376 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~---~~-~~~~~----p 433 (477)
++..|-. ....++|+..|.+. .+.|+...=-.++..+...|... +..++- .. +.+.+ -
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877642 23588999999988 66676543333333333444322 222222 11 11121 1
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 434 WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+--.+.+++.+..-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22334668888889999999999999999876
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.091 Score=47.81 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=101.6
Q ss_pred eeH--HHHHHHHHhc-----CCchHHHHHHHHHHHc-CCCCC-HHHHHHHHHHhhcc---------ccHHHHHHHHHHhh
Q 042503 300 VSW--NAMISGLAFN-----GRGELGVELYEQMIAK-GVSPN-KATFVGVLTCCAHA---------GLVEKARELFASMT 361 (477)
Q Consensus 300 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 361 (477)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++... .+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5566555442 2345677788888721 22333 55666666555422 23456666666666
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN- 438 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~- 438 (477)
+.. +.|......+..++.-.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 422 556677777777777778888999999888 667765 566666677778889999999999999988865433
Q ss_pred -HHHHHHHHHhcCCchHHHHHHH
Q 042503 439 -YVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 439 -~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.-..+..|+..+ .++|++++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 233333455544 667776653
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.50 E-value=0.023 Score=44.00 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh----ccCCCCChHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG----LHSIVPNLEH 372 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 372 (477)
..++..+...|++++|..+++.+.... |.+...+..+|.++...|+...|.++|+.+.. ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566677777777777776664 55666677777777777777777766665532 3455555544
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=96.50 E-value=0.23 Score=45.33 Aligned_cols=140 Identities=9% Similarity=0.014 Sum_probs=96.0
Q ss_pred ChHHHHHHhccCC---CCC---ceeHHHHHHHHHh---------cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 283 ILDTARNVFKEIP---RKN---VVSWNAMISGLAF---------NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 283 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888899887 434 3445555444332 123456777888888887 77888888888888888
Q ss_pred ccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH---HHHHHHHHHHHcCChHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA---IWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~ 422 (477)
++++.|...|++.... .|| ...|........-.|+.++|.+.+++. ...|... .....+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 8999999999999853 344 455655666677789999999999995 6666543 233333345444 566677
Q ss_pred HHHHH
Q 042503 423 HAVKE 427 (477)
Q Consensus 423 ~~~~~ 427 (477)
.+|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 76655
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.48 E-value=0.032 Score=41.45 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 330 VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
..|+..++.+++.+|+..+++..|.++.+.+...++++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44666666666666666666666666666666666666566666665543
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.44 E-value=0.2 Score=47.32 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=85.6
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhc-CC-----CCCHHHHHHHHHHHHHcCChH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCM-VDVLGRSGCVREAYDLIRSM-SI-----RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~ 419 (477)
..+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++. .. +.....+.-++..+.-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45788899999999853 3666555443 46677889999999999976 11 122345566777888899999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH-HHhcCCc-------hHHHHHHHHHHhC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNI-YAEGGRW-------DDAETLRMWMREN 465 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~ 465 (477)
+|.+.+.++.+.+..+...|..+.-+ +...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999888766655544444 5578888 8888888887553
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.41 E-value=0.011 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888888764
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.38 E-value=0.5 Score=39.84 Aligned_cols=222 Identities=18% Similarity=0.110 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHH
Q 042503 211 GRDSEALRLFHEMRDQAFEL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARN 289 (477)
Q Consensus 211 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (477)
+....+...+.......... ....+......+...+....+...+.........+.....+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332111 23444455555555555555555555554420114444444555555555555555555
Q ss_pred HhccCCC--CCc-eeHHHHHH-HHHhcCCchHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 290 VFKEIPR--KNV-VSWNAMIS-GLAFNGRGELGVELYEQMIAKGV--SPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 290 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
.+..... ++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 5555443 111 11222222 44555555555555555533110 012222222233334445555555555555421
Q ss_pred cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 122 2344444455555555555555555554 22332 233333333333444455555555555555543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.38 E-value=0.2 Score=37.77 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhcCCCCCc
Q 042503 418 VELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (477)
...|...|+++++..|++.-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55788888888888887653
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=96.36 E-value=0.076 Score=40.99 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=43.3
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|+..|..... .. ..|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34566666666666555543 33444455555555555666666666655442 11 12222233345555666666666
Q ss_pred HHHHHhc
Q 042503 390 YDLIRSM 396 (477)
Q Consensus 390 ~~~~~~~ 396 (477)
...|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 6655555
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.33 E-value=0.71 Score=42.05 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=77.2
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--hHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP---NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--LEH 372 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 372 (477)
...+|..+...+.+.|+++.|...+..+...+..+ .......-+......|+..+|...++.... ..+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcccccc
Confidence 34466677777777788888877777776643111 223333344555666777777777776663 111111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDL-IRSMSIRPNAAIWGSLLSSCRTH------GHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...+...+.. ..+..... ........-...+..+...+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112334444444444 788888999999999998888888888877
Q ss_pred HHhc
Q 042503 446 YAEG 449 (477)
Q Consensus 446 ~~~~ 449 (477)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 248
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=2.3 Score=46.98 Aligned_cols=317 Identities=12% Similarity=0.057 Sum_probs=177.0
Q ss_pred HHHHHHHhcCChhhHHHHhcccC----CC--chHHhHHHHHHHHhcCChHHHHHHHHh-cCCCChhhHHHHHHHHHhcCC
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMS----HR--DVIVRNLMIHGFCKKGDVDKGLYLFRE-MRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 212 (477)
.+..+-.+++.+.+|.-.++.-. +. ....+..+...|...+++|...-+... ...|+. ..-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 44456667888899988888832 21 122333444578888888877777663 333332 234445667899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH-HHHHHHhcCChHHHHHHh
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-LVDFYCKCGILDTARNVF 291 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~ 291 (477)
+..|...|+.+.+.+ ++...+++-++......+.++......+-..... ++...-++. =+.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999998764 4446778877777777777776666555444433 233332222 234445667777776665
Q ss_pred ccCCCCCceeHHHH--HHHHHhcCCch--HHHHHHHHHHHcCCCC--------C-HHHHHHHHHHhhccccHHHHHHHHH
Q 042503 292 KEIPRKNVVSWNAM--ISGLAFNGRGE--LGVELYEQMIAKGVSP--------N-KATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 292 ~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
. ..+..+|... +..+.+..+-+ .-...++.+.+.-+.| + ...|..++....-. +.+.-.+.+.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 5 4455556554 23333322222 1122333333321111 0 12233333322111 1111111111
Q ss_pred HhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP-----NAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
.........-+...|..-+..-....+..+-+-.+++. ..+| -..+|....+.....|.++.|...+-++.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11100011111222322222222222233333233332 1122 24689999999999999999999988888
Q ss_pred hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 430 NLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
+..+ +.++...+..+...|+-..|+.++++-++...+
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 7774 789999999999999999999999999876543
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.2 Score=43.23 Aligned_cols=112 Identities=9% Similarity=0.035 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH----HHHHHHHHhcCCHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY----GCMVDVLGRSGCVRE 388 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 388 (477)
|+..+|-..++++.+. .|.|...+...-.+|...|+.+.-...++++.. ...++...| ..+..++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444433 233444444444444444444444444444441 122332222 122233334455555
Q ss_pred HHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 389 AYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 389 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|.+.-++. .+.| |.-.-.+....+-..|+.+++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55444444 2222 222333333344444444444444443
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.42 Score=39.42 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
...+-.+....|+..|+..++.-.+.. |.+..+...|+.+| ..|+.+++.++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 333334444445555555555543322 34444444444443 33444444433
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.22 E-value=0.012 Score=32.06 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.+|..++.++...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888875
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.16 E-value=0.13 Score=38.36 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhh--------------hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMT--------------GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--- 396 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 396 (477)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555666666666665555554331 12233455555555555555555555555555544
Q ss_pred -CCCCCHHHHHHHHHHH
Q 042503 397 -SIRPNAAIWGSLLSSC 412 (477)
Q Consensus 397 -~~~p~~~~~~~l~~~~ 412 (477)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 4444455555555433
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.16 E-value=0.8 Score=39.99 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=12.4
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~ 429 (477)
.+.+.++++.|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777777777776543
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.10 E-value=0.44 Score=36.51 Aligned_cols=129 Identities=13% Similarity=0.040 Sum_probs=81.4
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
.....++..+...+.+.....+++.+...+ +.+....+.++..|++.+ .......++. ..+.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344566777777778888888888888776 466677788888887653 3444444442 1222333446677
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 380 LGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTH-GHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
+.+.+.++++.-++.+++.. ...+..+... ++++.|.+++++ +.++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77778888888888877522 2233333344 778888877765 2356677777766543
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.02 E-value=0.71 Score=42.47 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCCC
Q 042503 420 LAEHAVKELINLEPWN 435 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~ 435 (477)
.|.+.+.++++.+|.-
T Consensus 364 ~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3667788888877654
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.97 E-value=0.046 Score=46.55 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.++..++..+...|+++.+.+.+++.+..+|-+...|..++.+|.+.|+...|+..++++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666777777788888888888888887778888888888888888888877777654
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.92 Score=38.76 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=77.8
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc----eeHHHHHHHHHhcCCc
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV----VSWNAMISGLAFNGRG 315 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 315 (477)
......|++..+...++.+.... +.+..+...++.+|...|+.+.|..++..+..... .....-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888888877 66666777889999999999999999998875221 1122234444455555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5544444444332 3355566666777777788877776665554
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.87 E-value=0.63 Score=37.65 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+|..|++.|...|+.++|..+|+-.+.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4556666666666666666666655443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.86 E-value=0.22 Score=45.63 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.+-..+..+..+.|+.++|++.++++ ...|. ......|+.++...+.+.++..++.+.-+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33345666777788888888888887 32232 245667778888888888888888876444
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.78 E-value=0.99 Score=37.95 Aligned_cols=196 Identities=20% Similarity=0.110 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 44556667777777777777776666542 233455556666667777778888887777654332 122222222
Q ss_pred -HhhccccHHHHHHHHHHhhhccCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHHcC
Q 042503 343 -CCAHAGLVEKARELFASMTGLHSI--VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN--AAIWGSLLSSCRTHG 416 (477)
Q Consensus 343 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 416 (477)
++...|+++.+...+.+... ... ......+......+...++.+.+...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 57777888888888887752 211 123334444444566777888888888777 33333 566777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++.+...+..+....|.....+..+...+...|.++++...+++....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877765556666666666666777777777776654
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.76 E-value=1.5 Score=39.81 Aligned_cols=402 Identities=11% Similarity=0.065 Sum_probs=227.9
Q ss_pred HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhCCC
Q 042503 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSV---LLFNSMIKAYSLNGPSEEPVKLFALLKNLGI 96 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 96 (477)
++-+.+... |.|+..|-++++-+..+|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 444444443 56789999999999999999999999999998654 478888888888899999999999998764
Q ss_pred CCCcccHHHHHHHhhccCCc------hhHHHHHHHHHH-hcccCcc-hHHHHHHHHH---------HhcCChhhHHHHhc
Q 042503 97 WPDEYTFAPLLKACLGVGDL------RVGQCVHGEIIR-SGFERFG-SIRIGVVELY---------TSCGQMDDGMKVFD 159 (477)
Q Consensus 97 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~l~~~~---------~~~g~~~~A~~~~~ 159 (477)
.+...|...+..-.+.++. ....+.|+-.+. .+++|-. ..|+..+..+ -.+.+.|...+.+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3455555555443333211 112233333333 3444432 3444433322 12344556666666
Q ss_pred ccCCC----------chHHhHHHHHHHH-h------cCChHHHHHHHHhcCC-------C---ChhhHHH----------
Q 042503 160 EMSHR----------DVIVRNLMIHGFC-K------KGDVDKGLYLFREMRE-------R---SVVSWNL---------- 202 (477)
Q Consensus 160 ~~~~~----------~~~~~~~l~~~~~-~------~~~~~~a~~~~~~~~~-------~---~~~~~~~---------- 202 (477)
++... |-..|..=++... + .--+-.|.+.++++.. . +..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 66541 1111111111110 0 1112334444444321 1 1112222
Q ss_pred -HHHHHHhc-----CC-hh-HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 203 -MISSLGKS-----GR-DS-EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 203 -l~~~~~~~-----~~-~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.|..-... |+ .. ..--+++..... +...+..|--...-+...++-+.|.+.... |+ +..+.....+
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~-~~spsL~~~l 339 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GI-EMSPSLTMFL 339 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cc-cCCCchheeH
Confidence 11111100 00 00 000111111110 111112221111122233444444433322 22 3333333334
Q ss_pred HHHHHhcCChHHHHHHhccCC---------------------------------CCCceeHHHHHHHHHhcCCchHHHHH
Q 042503 275 VDFYCKCGILDTARNVFKEIP---------------------------------RKNVVSWNAMISGLAFNGRGELGVEL 321 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (477)
...|.-.++.+.....|+... ..-...|...+....+....+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 444444444444444333321 01223566777777788889999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHhc--C
Q 042503 322 YEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY-GCMVDVLGRSGCVREAYDLIRSM--S 397 (477)
Q Consensus 322 ~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~--~ 397 (477)
|.+..+.| +.++...+++++.-++ .|+...|..+|+.-... .||...| +..+..+...++-+.|..+|+.. .
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 99999988 6788888999998665 58889999999876522 3444443 55667778899999999999966 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 398 IRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 398 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+..+ ...|..++..-..-|+...+..+-+++.+.-|..
T Consensus 496 ~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 496 LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 3333 5789999999999999999999888888887763
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.75 E-value=0.39 Score=44.71 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHhcCCCchHHHHHH--HHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 74 AYSLNGPSEEPVKLFA--LLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 74 ~~~~~~~~~~a~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
...-+++++.+.+..+ ++.. .+ +....+.+++.+.+.|..+.|.++.+.- . .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 3344666666655554 1111 11 1334666777777777777777664322 1 123445677888
Q ss_pred hhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 042503 152 DDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA 227 (477)
Q Consensus 152 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 227 (477)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777765 444778888888888888888888877654 5566666777777766666665555544
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.71 E-value=0.79 Score=40.01 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 372 HYGCMVDVLGRSGCVR---EAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...++.+|...+..+ +|.++++.+ +-.|+ +.++..-+..+.+.++.+.+.+.+.+|+..-+.....+...+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3445555665555433 334444444 22222 233334445555566666666666666655443333444433333
Q ss_pred H--hcCCchHHHHHHHHHHhCCCccCCC
Q 042503 447 A--EGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 447 ~--~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
. .......|...+..++-.-+.+++.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 1 1122344555555555544444444
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.69 E-value=0.68 Score=40.60 Aligned_cols=128 Identities=15% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhhccccHHHHHHHHHHhhh---ccCCCCChHHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVS-----PNKATFVGVLTCCAHAGLVEKARELFASMTG---LHSIVPNLEHYG 374 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ 374 (477)
..+..++...+.++++++.|+......-. .....+..|...|....|+++|.-+..+..+ ..++..-...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666677777777665542111 1223456666667777777776655544322 222221112222
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 375 C-----MVDVLGRSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 375 ~-----l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
. |.-++...|++.+|.+..++. |.+|. ......+...|...|+.+.|..-|+.+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 233455666666666665554 33332 24556667777778888887777777654
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.054 Score=42.84 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=63.9
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRT 414 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 414 (477)
.-+...|++++|..-|..+.+.. ++. ...|..-..++.+.+.++.|+.-..+. .+.|+. ..+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 44677888888888888877432 222 223444455667777777777776665 445533 233333456667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...++.|++-|+++.+.+|....+....++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7778888888888888887655444444443
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=2.5 Score=41.65 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHhHHHHHhhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 37 LAHFVSVCGTLNEIKYATKIFNQMRN-PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 37 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
.....+-+-+.|++++|...|-+-.. .++ ..+|.-|....+...-...++.+.+.|+. +..--..|+.+|.+.++
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 33444455578999999888765443 222 35666777777777778888899988854 55555778899999999
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 194 (477)
.++-.+..+..- .|.- ..-....+..+.+.+-.++|..+-..... .......+ +-..+++++|++.++.++-
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 888766655432 1111 11234556667777777777766555443 22222333 3457889999999998875
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.68 Score=43.17 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=99.4
Q ss_pred HHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHH
Q 042503 108 KACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLY 187 (477)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (477)
+...-.++++.+.+..+.-.-. +.......+.++..+.+.|..+.|+++..+ | ..-.....+.|+++.|.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHHH
Confidence 4445667888766655311100 111245578889999999999999988664 2 233455678999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 188 LFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+.++.. +...|..|.....++|+++-|...|.+..+ +..++-.|.-.|+.+.-.++.+.+...|. .
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~- 405 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--I- 405 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---H-
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--H-
Confidence 887766 566999999999999999999999987643 44556667777887777777777776662 2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
+....++.-.|+.++..+++.+
T Consensus 406 ----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 406 ----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHH
Confidence 2233344445666555555443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.57 E-value=0.59 Score=35.78 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhc
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTL 47 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 47 (477)
.++..+...+.+......++.+...+ +.++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34555555555556666666655554 24555666666666554
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.51 E-value=0.14 Score=44.68 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH-cCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----ChHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIA-KGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP----NLEHY 373 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 373 (477)
|..+..++-+.-++.+++.+-+.-.. .|..|. ......+..++...+.++++++.|+....-..-.. ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 44444555555555555555444332 222221 12334567778888899999999988763221111 23578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCC
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-------SIRPNAA-----IWGSLLSSCRTHGHVELAEHAVKELINLE------PWN 435 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~ 435 (477)
-.|...|.+..++++|.-+..+. +++.-.. ....|.-++...|....|.+..+++.++. |..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999999999987766555 3222222 33445567888899999999888886543 444
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
......+++.|...|+.+.|..-++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 567788999999999999998887764
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.42 E-value=0.15 Score=42.88 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=74.3
Q ss_pred HHHhccCC--CCCceeHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc------------
Q 042503 288 RNVFKEIP--RKNVVSWNAMISGLAF-----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG------------ 348 (477)
Q Consensus 288 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------------ 348 (477)
+..|..+. +.|-.+|-.++..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3566677777777764 3567777778899999999999999999998876532
Q ss_pred ----cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH
Q 042503 349 ----LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV 386 (477)
Q Consensus 349 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (477)
+-+=+++++++|. ..|+.||..+-..|+.++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2344788889998 689999999998999998887743
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.57 Score=36.40 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH--HHHHHhcCC
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM--VDVLGRSGC 385 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 385 (477)
+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677888888888888766432221 11222334567788888888888876432222111111111 223456777
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 386 VREAYDLIRSMSI---RPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 386 ~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
+++...-.+-+.. +.....-..|.-+-.+.|++..|...|+.+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777776621 11223345566666777888888887777765
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.33 E-value=1 Score=35.23 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC--ChhhHHHHhcccC
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG--QMDDGMKVFDEMS 162 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 162 (477)
.+.++.+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566667777887888888888887777554 334444445555444333322221110 0222333333332
Q ss_pred CCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042503 163 HRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHE 222 (477)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (477)
..+..++..+...|++-+|.+.......-+......++.+..+.++...=..+++-
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12334445555566666666666554333333334444444444444433333333
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.31 E-value=0.58 Score=44.24 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCC-Cch---------HHhHHHHHHHHh----cCChHHHHHHHHhcCC--CChhhHH
Q 042503 138 RIGVVELYTSCGQMDDGMKVFDEMSH-RDV---------IVRNLMIHGFCK----KGDVDKGLYLFREMRE--RSVVSWN 201 (477)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~--~~~~~~~ 201 (477)
...++....-.||-+.+++.+....+ +++ ..|...+..++. ..+.+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34455555556666666666655443 111 123333333322 3455666666666665 5555444
Q ss_pred HH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH-HHHH
Q 042503 202 LM-ISSLGKSGRDSEALRLFHEMRDQA---FELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN-ALVD 276 (477)
Q Consensus 202 ~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~ 276 (477)
.. .+.+...|+.++|++.|+...... .+.....+--+..++....+|++|...+..+.+.. .-+...|. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 33 344555677777777776544211 01122233344555666677777777777777665 23333332 2233
Q ss_pred HHHhcCCh-------HHHHHHhccCC
Q 042503 277 FYCKCGIL-------DTARNVFKEIP 295 (477)
Q Consensus 277 ~~~~~~~~-------~~a~~~~~~~~ 295 (477)
++...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44455555 67777777664
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.27 E-value=1.5 Score=36.74 Aligned_cols=178 Identities=12% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCC---cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhc-
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPD---EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSC- 148 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 148 (477)
..-.+.|++++|.+.|+.+...- +-+ ..+...++.++-+.++++.|....++.++.-+.....-|...|.++...
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 34456677777777777776541 222 2334445555666777777777777777654443334444444444311
Q ss_pred ------CChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042503 149 ------GQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHE 222 (477)
Q Consensus 149 ------g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (477)
.|...+.+.+..+.+ ++.-|=...=...|...+..+...=...=..+.+.|.+.|.+..|..-+++
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~--------~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE--------LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH--------HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 111111111111111 000000000000000000000000000112345677888888888888888
Q ss_pred HHHcCCCCCH---HHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 223 MRDQAFELDE---ATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 223 m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
|++. .+-+. ..+..+..+|...|-.+.|...-+-+..
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8876 22222 2344455566666666666555444433
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.25 Score=42.64 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=87.6
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHH----HHHHHHHHcCCh
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWG----SLLSSCRTHGHV 418 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~----~l~~~~~~~~~~ 418 (477)
.-.|+..+|-..++++.+ ..|.|...+..--.++.-.|+.+.-...+++. ...||.+.|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345778888888888884 45778777777778899999999988888888 4466664432 334455688999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
++|++..+++.+++|.|.-+....+.++.-.|+..++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999998866666777777777777777766544
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.18 E-value=0.12 Score=43.45 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=79.4
Q ss_pred HHHHhccCC--CCCcchHHHHHHHHHh-----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC-----------
Q 042503 53 ATKIFNQMR--NPSVLLFNSMIKAYSL-----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG----------- 114 (477)
Q Consensus 53 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------- 114 (477)
.++.|..+. +.|-.+|-..+..+.. .+..+=....++.|.+.|+..|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445566665 3677788888877754 3566667777899999999999999999999875432
Q ss_pred -----CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh-hhHHHHhcccC
Q 042503 115 -----DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM-DDGMKVFDEMS 162 (477)
Q Consensus 115 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 162 (477)
+-+-+..++++|...|+.||..+-..|+.++.+.|-. .+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345778888888888888888888888888777653 23334443343
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.22 Score=36.47 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
++..|+.+.|++.|.+.+..- +-+...||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555544431 33444455555555555555555555555443
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.00 E-value=0.049 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.++..++.+|.+.|++++|.+++++.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999874
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.99 E-value=0.052 Score=29.95 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 438 NYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
++..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888754
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.93 E-value=0.054 Score=29.88 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
+|..|...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888889999999988885543
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.86 E-value=0.065 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777777777777777777777663
No 282
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.85 E-value=0.022 Score=44.02 Aligned_cols=129 Identities=10% Similarity=0.100 Sum_probs=85.2
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCch
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (477)
.++..+...+.+.....+++.+.+.+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45778888999999999999999887677799999999999999988999999885433 333556667777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCC
Q 042503 84 PVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQ 150 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (477)
+.-++.++....- .+..+...++++.|.+.... .++..+|..++..+...++
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 7777766543210 01112333444444433222 2346666666666665554
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.80 E-value=3.1 Score=37.93 Aligned_cols=96 Identities=6% Similarity=-0.034 Sum_probs=59.6
Q ss_pred CCchhHhHHHHHHHHhhcccchhHHHhHHHH--HhhcCChhHHHHHhccCCC------------------CCcchHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLHQSNLILAHFVSV--CGTLNEIKYATKIFNQMRN------------------PSVLLFNSMI 72 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~l~ 72 (477)
++++........+.+.. | ...|-.+..+ +-+.+.+++|.+.+..... +|...=+..+
T Consensus 59 ~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 44555555555555543 2 2234444433 3467889998888765432 2222334567
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCC----CCcccHHHHHHHhh
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIW----PDEYTFAPLLKACL 111 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~ 111 (477)
..+...|++.+++.+++++...=.+ -+..+|+.++-.+.
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 7888999999999999998765332 57778887544443
No 284
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.72 E-value=3.6 Score=38.21 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=63.7
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC------hHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN------LEHY 373 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 373 (477)
..|..++++|..+ ..++-..+|+++.+..+ .|.+.-..|...| ..++.+.+...|.++.. .+-|. ...|
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~y--rfI~~~q~~~i~evW 174 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY-EKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVW 174 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH-HHhchhhHHHHHHHHHH--HhcchhhhhhHHHHH
Confidence 3444555555554 34455555555555431 1222222233322 23555555555555542 11121 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM----SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
.-|...- ..+.+...++..+. +...-...+..+-.-|....++++|++++..+++.+..+..+...++.-+.
T Consensus 175 eKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 175 EKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 2222211 23444444444444 222223334444445556667777777777666666555555555554443
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.66 E-value=1.3 Score=32.79 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=75.5
Q ss_pred HhcCChHHHHHHhccCCCC-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPRK-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.-.|..++..++..+...+ +..-+|-++--....-+ +..+++.+..-|--.|. ...|+.......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~---C~yvv~~LdsIGkiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAAD---CDYVVETLDSIGKIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH-----HHHHHHHHHHHGGGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhc---hhHHHHHHHHHhhhcCc----------hhhcchHHHHHHH
Confidence 3457777777777765542 33334333332222222 23333333333322221 2334444444444
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
-.+- .+......-+..+..+|+-+.-.+++++. .-++++.....+..+|.+.|+..++.++++++-+.+
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332 23445556677888999999999998887 457888999999999999999999999999987665
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.54 E-value=6.7 Score=40.54 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=92.0
Q ss_pred cCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHhhccCcccchHHH
Q 042503 179 KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL----PICARLGAVDIGQWI 254 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~ 254 (477)
.++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.++.|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345555555554444 223333344444455555555554 56666655544 444566777777777
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeH---HHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSW---NAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
|+..-+. ..-+.+|..+|++++|+.+..++..+-.... ..|..-+...+++-+|-++..+....
T Consensus 962 Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen 962 YERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred HHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence 7665444 3457788888999999998888776433222 56777778888888888887775532
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
| ...+..+++...+++|..+-...
T Consensus 1029 ~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 1 12234455566666666555443
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=2.3 Score=35.27 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
.|..-..+|...+++++|...+.+..+. ..-+...| -.....+.|.-+.+++.+. +.-...++.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl---sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL---SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 3445556666777777777766555421 01111111 1112233333344444333 44555666777778
Q ss_pred HhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCC---HHHHHHHHHHhhccccHHHH
Q 042503 279 CKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPN---KATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~~~~~~l~~~~~~~~~~~~a 353 (477)
..+|.++.|-..+++.-+ ....-++++|+++|++...-=. ..+ ...+....+.+.+...+++|
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 888877776655554321 2234456677777766543200 111 22334444556666777766
Q ss_pred HHHHHHhhh----ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 042503 354 RELFASMTG----LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM------SIRPNAAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 354 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
-..+.+-.. -...+.--..|-..|-.|.-..++..|.+.+++. ....+..+...|+.+| ..||.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 655544321 0111111234556666777788999999999885 1133456788888776 6678887776
Q ss_pred HH
Q 042503 424 AV 425 (477)
Q Consensus 424 ~~ 425 (477)
++
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 65
No 288
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.52 E-value=3.9 Score=37.83 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC------cccchHHHHHHHHHhCC-ccchhHHHHHHHHHHHhcCChHH-
Q 042503 215 EALRLFHEMRDQAFELDEATVVAVLPICARLG------AVDIGQWIHSYAESSGL-YRKVVSVGNALVDFYCKCGILDT- 286 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~- 286 (477)
....+|++..+. -|+...+...|..|...- .......+++.+...+. .+..+..|..+.-.++......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344556555443 455556666666554322 23344445555544432 23444555555555555554433
Q ss_pred HHHHhccCCCCCceeHHHHHHHHHhcC-CchHHH-HHHHHHHHcCCCCCHHHHHHHH-HHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPRKNVVSWNAMISGLAFNG-RGELGV-ELYEQMIAKGVSPNKATFVGVL-TCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|..+..+..+.+...|-.-+....+.. +++--. .++......-..+....|+... .........+.....+..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-- 455 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-- 455 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc--
Confidence 344443444556655555554444221 222111 1222222221222233333333 01111111222222222222
Q ss_pred cCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCCch
Q 042503 364 HSIVPNLEH-YGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCR--THGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 364 ~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.|+..+ -+.+++.+.+.|-..+|...+... .. +|+...|..++..-. ..-+...+.++|+.++.....+++.
T Consensus 456 ---~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 ---GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred ---CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 344433 456788888999999999999998 22 456677888876532 2234888899999998776688999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 439 YVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|..+...-...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 99998888899999988888776654
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.51 E-value=0.12 Score=39.81 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=60.0
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHH
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDK 184 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (477)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888776666777888888888888888888888884433 333455666666666666
Q ss_pred HHHHHHhcCC
Q 042503 185 GLYLFREMRE 194 (477)
Q Consensus 185 a~~~~~~~~~ 194 (477)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 6666665543
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=1.9 Score=33.63 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
..|..+-.+.|++.+|.+.|..+
T Consensus 171 EALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHH
Confidence 33434444444444444444443
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=5.6 Score=38.99 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNV 299 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 299 (477)
....|+..|...+++..|...+-...++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 345689999999999999999988876544
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.31 E-value=2.8 Score=35.29 Aligned_cols=251 Identities=16% Similarity=0.135 Sum_probs=129.8
Q ss_pred ChHHHHHHHHhcCC--CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhccCcc
Q 042503 181 DVDKGLYLFREMRE--RS-----VVSWNLMISSLGKSGRDSEALRLFHEMRDQ---AF--ELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 181 ~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~~~~ 248 (477)
+.++|+.-|++..+ +. -.+.-.++....+.|++++.+..|.+|+.. .+ .-+....++++.-.+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 44555555555443 11 113344566677777777777777666432 11 22344556666555555555
Q ss_pred cchHHHHHHHHHh----CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--------C-------CceeHHHHHHHH
Q 042503 249 DIGQWIHSYAESS----GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--------K-------NVVSWNAMISGL 309 (477)
Q Consensus 249 ~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-------~~~~~~~l~~~~ 309 (477)
+.-..+++.-.+. ........+-..|...|...+.+..-..+++++.+ . -...|..=|+.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5444444332221 10011122224677778888887777777776642 0 123566677888
Q ss_pred HhcCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHh-----hccccHHHHHHHHHHhhhccCC--CCChHH---HHHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCC-----AHAGLVEKARELFASMTGLHSI--VPNLEH---YGCMVD 378 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~---~~~l~~ 378 (477)
...++-.+...+|++..... .-|.+.... +++-| .+.|++++|..-|-++.+...- .|...+ |..|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 234444433 34433 4668888876544444322211 232222 444555
Q ss_pred HHHhcCC--HHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 379 VLGRSGC--VREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 379 ~~~~~g~--~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+.+.|- ++. ++. ...|.......++.+| +.++..+-+++++.-.+.--++|.+
T Consensus 281 MLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 281 MLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhccccccHHH
Confidence 5555541 110 111 2234445667777776 4456666556555444333333433
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.22 E-value=2 Score=33.24 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=47.2
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
...++.+.+..++..+.-...-.|...++. ...+...|++.+|+++|+++ ...|....-..|+..|.....-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 456677777777777764322222233333 33466778888888888887 334444444455544444333333333
Q ss_pred HHHHHHhcCC
Q 042503 424 AVKELINLEP 433 (477)
Q Consensus 424 ~~~~~~~~~p 433 (477)
.-+++.+.++
T Consensus 99 ~A~evle~~~ 108 (160)
T PF09613_consen 99 YADEVLESGA 108 (160)
T ss_pred HHHHHHhcCC
Confidence 3444444444
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.19 E-value=0.45 Score=36.01 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHhc-CCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 371 EHYGCMVDVL---GRSGCVREAYDLIRSM-SIRPNAAIWGS-LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 371 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+.+.|+... ...++++++..+++.+ -.+|+..-... -...+...|++.+|.+++++..+-.+..+..-..++.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444444432 3466777777777777 33444322221 12345677777777777777777666555555556666
Q ss_pred HHhcCCc
Q 042503 446 YAEGGRW 452 (477)
Q Consensus 446 ~~~~g~~ 452 (477)
+.-.|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 6666654
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.10 E-value=0.11 Score=44.82 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=69.8
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 417 (477)
-...|.+.|.+++|++.|...... .+-+..++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356788999999999999887732 2337788888888999999888887766665 211 112344444555556678
Q ss_pred hHHHHHHHHHHHhcCCCCCch
Q 042503 418 VELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~ 438 (477)
..+|.+-++.++++.|.+...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 889999999999999985543
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.04 E-value=0.13 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=16.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.++.++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666655554
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.79 E-value=5.1 Score=39.58 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV 113 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 113 (477)
.+|-.|.|.|++++|.++.+...+. .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4555677888888888887555543 345556677777777654
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.72 E-value=0.094 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR 288 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (477)
++++++.. |.++.+|..+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555 888888888888888888888875
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.71 E-value=0.59 Score=36.07 Aligned_cols=97 Identities=20% Similarity=0.081 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHH---HhcCCHHHHHHHHHhc-CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 369 NLEHYGCMVDVL---GRSGCVREAYDLIRSM-SIRPNAAIWGSL-LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 369 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
+..+.+.|+... .+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++++.+.+..|..+..-..++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 334555555543 4678999999999888 556665443322 34567899999999999998888887777777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++...|+.+= ..+-+++.+.+
T Consensus 86 ~CL~~~~D~~W-r~~A~evle~~ 107 (160)
T PF09613_consen 86 LCLYALGDPSW-RRYADEVLESG 107 (160)
T ss_pred HHHHHcCChHH-HHHHHHHHhcC
Confidence 77777776432 22234455554
No 300
>PRK09687 putative lyase; Provisional
Probab=93.57 E-value=4.6 Score=35.21 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=13.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344455555553 45555555555444
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.54 E-value=6 Score=36.43 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=74.7
Q ss_pred cCCCchhHh-HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHH
Q 042503 11 GRNTRTHLT-QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVK 86 (477)
Q Consensus 11 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 86 (477)
..|++..|- +++..+......| .............|+++.+...+..... ....+...+++...+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 456665554 3444444443333 3333334455677888888888776544 556677888888888899999998
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCc
Q 042503 87 LFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF 134 (477)
Q Consensus 87 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (477)
+-+-|....+. ++..........-..|-++++.-.++++...+++.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888765543 333333222223345667777777777766544433
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.35 E-value=4.2 Score=35.75 Aligned_cols=147 Identities=10% Similarity=0.092 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--c----ccHHHHHHHHHHhhhccCCCCC--hHHHHHHHHHHHhcCCHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAH--A----GLVEKARELFASMTGLHSIVPN--LEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 387 (477)
++...+++.|.+.|+.-+..+|.+....... . .....|..+++.|++.+.+-.+ ..++..++.. ..++++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566788888888888887776553333222 2 2356788899999876554322 3333333322 333333
Q ss_pred ----HHHHHHHhc---CCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch-HH
Q 042503 388 ----EAYDLIRSM---SIRPNA--AIWGSLLSSCRTHGH--VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD-DA 455 (477)
Q Consensus 388 ----~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 455 (477)
.+...|+.+ +...+. .....++..+....+ ..++.++++.+.+.+..-...+...+.+++-.+..+ +.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334444444 443332 233333332222222 346677777777666322333344444444444333 55
Q ss_pred HHHHHHHHh
Q 042503 456 ETLRMWMRE 464 (477)
Q Consensus 456 ~~~~~~~~~ 464 (477)
..-+.++.+
T Consensus 237 ~~~i~ev~~ 245 (297)
T PF13170_consen 237 VEEIKEVID 245 (297)
T ss_pred HHHHHHHHH
Confidence 555555543
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.26 E-value=6.3 Score=35.82 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.....+|..++..+.+.|.++.|...+.++...+ +..+......++.+...|+..+|...++..++.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445788999999999999999999999998765 224778888899999999999999999998873
No 304
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.26 E-value=9.5 Score=37.86 Aligned_cols=185 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC--Cc-eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 271 GNALVDFYCKCGILDTARNVFKEIPRK--NV-VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
...-+......++++.+...+..|... +. .-.-=+..++...|+.++|..+|+.+.. ..+ .|..+... +.
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~L 387 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RL 387 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--Hc
Confidence 344445555777777777777776531 11 1122234455556777777777777632 112 22222211 11
Q ss_pred ccHHHHHHHHHHhhhccCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNL-----EHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
|..-. +. ....++.. ..--.-+..+...|....|...+..+....+......+.....+.|.++.++
T Consensus 388 g~~~~-------~~-~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 388 GEEYP-------LK-IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred CCCCC-------CC-CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 21100 00 00000000 0011123456677888888888877722355566666666677888888887
Q ss_pred HHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 423 HAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 423 ~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
....+....+ -.-|..|...+..+.+.-.++.++-+----.|.+..|.
T Consensus 460 ~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 460 QATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 7766543321 01133466666666665566665533223334444443
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=1.8 Score=34.60 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 379 VLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
.....|.+++|+..++.. +-.-.......-+.++...|+-++|+..|+++++.+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344445555555555443 111111222233344445555555555555554444
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=3.7 Score=32.90 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIW-----GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+...+...|++++|...++..--.|....+ ..|.+.....|.+++|...++...+.+- .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 345667777777777777765223333333 2344556677888888877776544332 1334556677788888
Q ss_pred CchHHHHHHHHHHhCC
Q 042503 451 RWDDAETLRMWMRENN 466 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~ 466 (477)
+.++|+.-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887775
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.16 E-value=0.15 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+..++.++...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998875
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.14 E-value=1.6 Score=39.95 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=47.1
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
+...|+++.+.+.+....+ -+.....+...+++...+.|++++|...-.-| + --.+++............|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 4455666666666555442 22334445555666666666666666666555 1 122333333333334445566666
Q ss_pred HHHHHHHHhcCCCC
Q 042503 422 EHAVKELINLEPWN 435 (477)
Q Consensus 422 ~~~~~~~~~~~p~~ 435 (477)
...|++...++|+.
T Consensus 411 ~~~wk~~~~~~~~~ 424 (831)
T PRK15180 411 YHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccCChh
Confidence 66666666666443
No 309
>PRK09687 putative lyase; Provisional
Probab=93.10 E-value=5.6 Score=34.74 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=26.7
Q ss_pred cchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCc----hHHHHHHHH
Q 042503 32 QSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSE----EPVKLFALL 91 (477)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~ 91 (477)
++..+....+..+...|..+....+..-..++|...=...+.++.+.|+.. ++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344444445555555554333333333223344444444455555555432 344445444
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.62 E-value=0.5 Score=38.26 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
-+..+.+.+.+.+|+...++- +-+|.. ..-..++..++-.|++++|..-++-+-++.|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344555556666666655554 333332 334445555566666666666666665555543
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.48 E-value=2.9 Score=33.49 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPN--KATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555666666666666666555433332 2234445555555566666665555554
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.44 E-value=0.18 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777664
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.28 E-value=1.4 Score=38.72 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred chhHhHHHHHHHHhhcccchhHHHhHHHHHhh--c----CChhHHHHHhccCCC-------CCcchHHHHHHHHHhcCCC
Q 042503 15 RTHLTQIHAHFLRHKLHQSNLILAHFVSVCGT--L----NEIKYATKIFNQMRN-------PSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~ 81 (477)
+++...+++.+.+.|+..+..++-+..-.... . .....|.++|+.|++ ++-..+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788999999998887776664444433 2 234568888888876 344455555443 33333
Q ss_pred ----chHHHHHHHHHhCCCCCCcc--cHHHHHHHhhccCC--chhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 82 ----EEPVKLFALLKNLGIWPDEY--TFAPLLKACLGVGD--LRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 82 ----~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
+.+..+|+.+.+.|...+.. ..+.++..+....+ ...+.++++.+.+.|.++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 55677888888877665443 33333333322222 34677888888888888877777655543
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.24 E-value=0.24 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|..++.+|...|++++|+..+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999998753
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=2.7 Score=31.96 Aligned_cols=52 Identities=4% Similarity=-0.126 Sum_probs=24.4
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN 62 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 62 (477)
...++++++..+++.+.-..+ ..+..-.--...+...|+|++|..+|+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 345555555555555554431 1122222223334455556666666555554
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=92.19 E-value=2.9 Score=29.19 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=34.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 042503 174 HGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV 236 (477)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 236 (477)
..+...|++++|..+.+....||...|-+|.. .+.|-.++....+..|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34555666666666666666666666655443 35566666666666666665 44444443
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.16 E-value=1.6 Score=34.96 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc---CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM---SIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+..+...|.+.|+.++|.+.|.++ ...| -...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555 1111 123444455555555555555555555543
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=6.2 Score=32.66 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=68.4
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhhcc-ccHHHHHHHHHHhhhccCC-CCChH---HHHHHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPN-----KATFVGVLTCCAHA-GLVEKARELFASMTGLHSI-VPNLE---HYGCMVDV 379 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~---~~~~l~~~ 379 (477)
.+.+++++|...++..++.-.... ......+...|... .++++|+..|+..-+-+.. ..+.. .+.-...-
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 345588888888877665311111 11122344555443 6777888888776532111 11111 12222233
Q ss_pred HHhcCCHHHHHHHHHhc---CCCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 380 LGRSGCVREAYDLIRSM---SIRPNAAIW------GSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~---~~~p~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
-...+++.+|+++|++. ....+..-| ..-+-++.-..|.-.+.+.+++..+.+|.-.++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34667888888888887 222221111 222222333467777888888888888865444
No 319
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=1.2 Score=36.90 Aligned_cols=57 Identities=12% Similarity=-0.066 Sum_probs=33.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
-.++...|++-++++.-.++++..|.+..+|..-+.+.+..=+.++|..-+.++++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455566666666666666666666666666666666555666666655555554
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.97 E-value=0.35 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 440 VLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..|+.+|...|+.+.|.++++++++.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999998765
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.86 Score=37.53 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=47.3
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHHcCChH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRTHGHVE 419 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~ 419 (477)
.|.....++.|+..+.+... +.|+. .-|+.=+.++.+..+++.+..--.+. .+.||.. ....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35555566666666655552 24444 33444555666666666665555444 5555543 3333444555666666
Q ss_pred HHHHHHHHHHhc
Q 042503 420 LAEHAVKELINL 431 (477)
Q Consensus 420 ~a~~~~~~~~~~ 431 (477)
+|+..+.++.++
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 676666666443
No 322
>PRK10941 hypothetical protein; Provisional
Probab=91.90 E-value=1.2 Score=38.28 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+.+-.+|.+.++++.|.++.+.++...|+++.-+..-+.+|.+.|.+..|..-++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566677888888888888888888888888888888888888888888888888877663
No 323
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.50 E-value=2.2 Score=36.67 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3334444444444444444444444443 334444444444444444444444444443
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.49 E-value=17 Score=36.61 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=96.1
Q ss_pred HhcCChHHHHHHhccCC----CCCce-------eHHHHHH-HHHhcCCchHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIP----RKNVV-------SWNAMIS-GLAFNGRGELGVELYEQMIAKG----VSPNKATFVGVLT 342 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~----~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~l~~ 342 (477)
....++++|..++.++. .|+.. .|+.+-. .....|++++|.++.+.....= ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777666543 22221 3444332 2335678888888877766541 1233445556666
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHH---HHHH--HHHHHhcCCHHHH--HHHHHhc-----CCCCC----HHHHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEH---YGCM--VDVLGRSGCVREA--YDLIRSM-----SIRPN----AAIWG 406 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 406 (477)
+..-.|++++|..+.....+ ..-.-+... |..+ ...+..+|+...+ ...|... ..+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677888888877776653 111122222 2222 2234456633222 2223222 22222 23444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc----CCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINL----EPWNSG---NYVLLSNIYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
.++.++.+ .+.+..-.....+. .|.... .+..|+..+...|+.++|...++++......+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 55555554 33333333333322 222211 223677778888888888888888876554443
No 325
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.47 E-value=6.8 Score=32.04 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=105.6
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce-eHHHHHH--HHHhcCCchHHHH
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV-SWNAMIS--GLAFNGRGELGVE 320 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~ 320 (477)
..|-++.|.--|.+..... |.-+.+++-+.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3344445555555555555 888899999999999999999999999998876553 2332222 2334578888887
Q ss_pred HHHHHHHcCCCCCHH--HHHHHHHHhhccccHHHHHHHH-HHhhhccCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhc
Q 042503 321 LYEQMIAKGVSPNKA--TFVGVLTCCAHAGLVEKARELF-ASMTGLHSIVPNLEHYGCM-VDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 396 (477)
-+...-+.. +.|+. .|.-+. ...-++.+|..-+ ++.. ..|..-|... +..|...=..+.+.+-....
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 777766654 32322 222222 2334566665444 3333 2333333332 23333222233333322222
Q ss_pred CCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 397 SIR------PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 397 ~~~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
... .-..||.-+..-+...|+.++|..+|+-++..+.-
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 100 11357777888888999999999999999877643
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.41 E-value=2.9 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++.+.+..+.|+.-..++++++|....+...-+.+|.+..++++|+.-++++.+
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.29 E-value=2.7 Score=33.22 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=39.4
Q ss_pred HHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 042503 387 REAYDLIRSM-SIRPNA-AIWGSLLSSCRTHG-----------HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 387 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (477)
++|+.-|++. .+.|+. .++..++.++...+ .+++|.+.|+++++.+|.+. .|..-+.+. +
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------A 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------H
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------H
Confidence 3334444444 556665 56777777765443 25667777777778888644 444333332 3
Q ss_pred HHHHHHHHHHhCC
Q 042503 454 DAETLRMWMRENN 466 (477)
Q Consensus 454 ~A~~~~~~~~~~~ 466 (477)
+|-++..++.+.+
T Consensus 125 kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 KAPELHMEIHKQG 137 (186)
T ss_dssp THHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHH
Confidence 4666666665554
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.22 E-value=1.9 Score=35.75 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCChH-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 404 IWGSLLSSCRTHGHVE-------LAEHAVKELINLE--PWN----SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
.+..+.+.|...|+.+ .|.+.|+++.+.. |.. ......++....+.|+.++|.+++.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4555666666667644 4555555555443 222 3466678888889999999999999998775433
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.17 E-value=0.26 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 438 NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..++.++.+.|++++|.+.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999875
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.94 E-value=0.7 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+++|+.-|++++.++|+..+++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 556777788888999999999999999987654
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.86 E-value=0.48 Score=26.86 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+++.++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777654
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.79 E-value=1.2 Score=38.84 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=63.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
-.+-|.++|.+++|+..|....... +-|.+++..-..+|.+...+..|+.-........ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999887653 4488888888889999999998887777666211 111223333333334445
Q ss_pred CHHHHHHHHHhc-CCCCCH
Q 042503 385 CVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~ 402 (477)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555555 556664
No 333
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.75 E-value=6.9 Score=30.80 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcC--ChHHHHHHHHhcCCCCh
Q 042503 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG--DVDKGLYLFREMRERSV 197 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 197 (477)
.+.++.+.+.+++|+...+..+++.+.+.|++.....++.--.=+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455666678899999999999999999999998888877654455444433332222211 1233445554443
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..+++....
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245667788889999999999887753221 112 23345555555554444444444433
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.72 E-value=9.7 Score=37.15 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-cCCchHHHHHHHHHHhCCC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAE-GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 467 (477)
+...|..+++++.+.++ +.+...+...+.- .++++.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 55566666666665552 2222222222221 1555555555555554443
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=19 Score=35.68 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
..|+..|...+++..|+.++-..+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336777777777777777775554
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.62 E-value=24 Score=36.85 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHH
Q 042503 138 RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEAL 217 (477)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (477)
|...++.--+.|-+.+|+.++.-=.+.-...|.+....+...+.+++|.-.|+...+ ...-+.+|...|+|.+|+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREAL 985 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHH
Confidence 333344444555555555555433222233444444455556666666666655443 122345566677777777
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 218 RLFHEMRDQAFELDEAT--VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 218 ~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
.+-.++... -|... -..|...+...++.-+|-++........ ...+..|++...+++|..+.....
T Consensus 986 ~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~---------~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP---------EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH---------HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 776655321 11111 1345555566666666666655544332 334555666677777777665554
Q ss_pred C
Q 042503 296 R 296 (477)
Q Consensus 296 ~ 296 (477)
+
T Consensus 1054 ~ 1054 (1265)
T KOG1920|consen 1054 R 1054 (1265)
T ss_pred c
Confidence 3
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.42 E-value=0.6 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+|..++..|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.22 E-value=0.81 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
..+++.+...|...|++++|+.+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888999999999999999888753
No 339
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.17 E-value=0.83 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555556666666666666655554
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.75 E-value=1.1 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
-.+.-++.+.|++++|.+..+.+++.+|++..+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3456678899999999999999999999876543
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.64 E-value=13 Score=32.11 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
++......|...|.+.+|.++-++++.++|.+...+..++..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566789999999999999999999999999999999999999999878877777663
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.61 E-value=2.3 Score=29.77 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-+..+....+.|++......+++|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566666667788899999999999999999999999999888655433 336665553
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=1.3 Score=38.10 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=56.2
Q ss_pred cccchhHHHhHHHHHhhcCChhHHHHHhccCCC-CC------cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc
Q 042503 30 LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-PS------VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT 102 (477)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 102 (477)
.+.+..+...++..-....+++.++..+-+++. |+ ...+ ..++.+ -.-++++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 334444455555555555666666666555543 21 1111 122222 23355667777666667777777777
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHh
Q 042503 103 FAPLLKACLGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (477)
+..++..+.+.+++..|.++...++..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777666666554
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.30 E-value=1.4 Score=30.46 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCch-HHHHHHHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWD-DAETLRMW 461 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~ 461 (477)
.|...-..+...+...|+++.|.+.+-++++.++.. ...-..|+.++.-.|.-+ -+.++-++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 345666777777888888888888888887776543 556677777777777644 33333333
No 345
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.13 E-value=0.86 Score=23.93 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
|+.+.+..+|++++...|.++..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999898888888877653
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.06 E-value=2.6 Score=29.18 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566667777778888888888899999999999999999888743332 3445655543
No 347
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.80 E-value=3.5 Score=35.65 Aligned_cols=96 Identities=7% Similarity=-0.012 Sum_probs=60.1
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKG---VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG 374 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (477)
...+...++..-....+++.++.++-++.... ..|+... ...++.| -.-++++++.++..-. .+|+-||..++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npI-qYGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcc-hhccccchhhHH
Confidence 34455555555455667777777777665431 1122111 1222322 2345667777777666 588888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.+++.+.+.+++.+|.++...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888888777666
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.97 E-value=6.3 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHH
Q 042503 385 CVREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 385 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
.-+.|.+.|-.+ +.--++.....++ .|....|.++++.++-+++++. ..|++.+..|+..|.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666666 2223444444444 4445778899999999888765 235788999999999999988874
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=5.3 Score=37.94 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=46.6
Q ss_pred hcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (477)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344555554444332 2344466666666666666666665555432 22344444444544433333333
Q ss_pred hhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 042503 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMS 397 (477)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (477)
.. ..|. .| .-..+|...|+++++.+++.+-+
T Consensus 718 ~~-~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AK-KQGK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HH-hhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 33 2221 11 12234455566666666665553
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.61 E-value=22 Score=32.43 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPW-NSGNYVLLSNIYA-EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 464 (477)
.+..+.+.|-+..|.++.+-+..++|. ||-....+++.|+ ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 356678899999999999999999998 8888888888886 78888888888887655
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.19 E-value=8.2 Score=27.05 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=60.0
Q ss_pred CCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLK 92 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 92 (477)
...++|.-|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+.+..-+..|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3457788888888777632 333333445667788999999999999888999888877554 5566666666666777
Q ss_pred hCCCCCCcccHH
Q 042503 93 NLGIWPDEYTFA 104 (477)
Q Consensus 93 ~~~~~p~~~~~~ 104 (477)
.+| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 666 44444443
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.16 E-value=27 Score=32.89 Aligned_cols=158 Identities=11% Similarity=0.115 Sum_probs=81.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALV 275 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 275 (477)
|....-+++..+.....+.-+..+..+|..-| .+...|..++.+|... ..+.-..+++++.+... .+...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 33445556666777777777777777777653 4555666677777666 55556666676666663 3333334555
Q ss_pred HHHHhcCChHHHHHHhccCCCC------Cc---eeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhh
Q 042503 276 DFYCKCGILDTARNVFKEIPRK------NV---VSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCA 345 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~ 345 (477)
..|-+ ++...+...|.++... +. ..|..+... -..+.+....+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 5555565555554321 11 123222221 123344444444444332 22222233333334455
Q ss_pred ccccHHHHHHHHHHhh
Q 042503 346 HAGLVEKARELFASMT 361 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~ 361 (477)
...++++|++++..+.
T Consensus 217 ~~eN~~eai~Ilk~il 232 (711)
T COG1747 217 ENENWTEAIRILKHIL 232 (711)
T ss_pred cccCHHHHHHHHHHHh
Confidence 5566666666666555
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.14 E-value=6.4 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 388 EAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 388 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|.++++-+...-.+....|-.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 334444444 667888888999999999999999999998887655444445655543
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.99 E-value=7.6 Score=31.48 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHcCChHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM------SIRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
+.|.+.|-.+.. .+.-.++.....|...|. ..+.++++.++.+. +..+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555542 333344444444444443 44566666665554 2255666666666666666666655
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.95 E-value=35 Score=33.99 Aligned_cols=175 Identities=12% Similarity=0.074 Sum_probs=91.4
Q ss_pred hHhHHHHHHHH-hhcccc--hhHHHhHHHHHh-hcCChhHHHHHhccCCC----CCc-----chHHHHHHHHHhcCCCch
Q 042503 17 HLTQIHAHFLR-HKLHQS--NLILAHFVSVCG-TLNEIKYATKIFNQMRN----PSV-----LLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 17 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~ 83 (477)
.|...++.+.+ ..++|. ..++..+...+. ...+++.|+..+++... ++. .+...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555566663 333333 335666677666 56788999998886543 221 12234555665555555
Q ss_pred HHHHHHHHHhCCCCCCcc----cHHHH-HHHhhccCCchhHHHHHHHHHHhc---ccCcchHHHHHHHHHH--hcCChhh
Q 042503 84 PVKLFALLKNLGIWPDEY----TFAPL-LKACLGVGDLRVGQCVHGEIIRSG---FERFGSIRIGVVELYT--SCGQMDD 153 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~----~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 153 (477)
|...+++..+.--..... .|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888766542111112 22222 222223378888888888877643 2333444444444433 3454555
Q ss_pred HHHHhcccCC-------------CchHHhHHHHHHH--HhcCChHHHHHHHHhc
Q 042503 154 GMKVFDEMSH-------------RDVIVRNLMIHGF--CKKGDVDKGLYLFREM 192 (477)
Q Consensus 154 A~~~~~~~~~-------------~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 192 (477)
+.+.++.+.. |...+|..++..+ ...|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554411 2344555554433 3456655555554444
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.89 E-value=5.9 Score=27.53 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 388 EAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 388 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
++.+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-....-..+...|-.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 334444444 66788888888888888888888888888877644433333444443
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.86 E-value=63 Score=36.90 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=85.0
Q ss_pred HHHhhcCChhHHHHHhccC----CCC--CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 42 SVCGTLNEIKYATKIFNQM----RNP--SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
.+-.+++.+..|.-.++.- .+. ...-|-.+...|..-++++...-+...-. .+...+.. +......|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHhhcc
Confidence 3445566677777777763 111 12234444447777788877766665311 12222232 333456778
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHH-HHHHHhcCChHHHHHHHHh
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLM-IHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 191 (477)
+..|...|+.+.+.+++ ....++.++......|.++.+....+.... +....++.+ +.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887775432 355666666666677777777776666554 222233322 333456677776666655
Q ss_pred cCCCChhhHHHH
Q 042503 192 MRERSVVSWNLM 203 (477)
Q Consensus 192 ~~~~~~~~~~~l 203 (477)
..+..+|...
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 3444444443
No 358
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.02 E-value=30 Score=32.33 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred hcCCchHHHHHHHHHHHc-CCCCCH--H------HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH--HHHHHHHH
Q 042503 311 FNGRGELGVELYEQMIAK-GVSPNK--A------TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE--HYGCMVDV 379 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~-~~~~~~--~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~ 379 (477)
-.|++.+|++-+.+|.+- .-.|.. . .-..+...|...+.++.|+.-|....+ .--.-|.. .-..+.-.
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATK-LTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhhHHHHHHHHHHhHHHH
Confidence 468888888888887762 112221 1 111222334556778888877776653 21122222 22345667
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHH----------HHHHHHHHHHcCChHHHHHHHHHHHhcCC-C-----CCchHHHHH
Q 042503 380 LGRSGCVREAYDLIRSMSIRPNAAI----------WGSLLSSCRTHGHVELAEHAVKELINLEP-W-----NSGNYVLLS 443 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~-----~~~~~~~l~ 443 (477)
|.+.|+-+.-.++++..+ +|+..+ +..-+-.....+++.+|.+.+.+.++... . ..-....|+
T Consensus 414 YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 888888877777777773 121111 11111122467888888888888776541 1 122344455
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 042503 444 NIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~ 462 (477)
.+....|+..++.+...-.
T Consensus 493 ~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHhcchHHHHhccchH
Confidence 5666777777776655433
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.89 E-value=42 Score=33.98 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=83.9
Q ss_pred hcCChHHHHHHhccCCC--------CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH---HH--HHHhhc
Q 042503 280 KCGILDTARNVFKEIPR--------KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFV---GV--LTCCAH 346 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l--~~~~~~ 346 (477)
..|+++.|.++.+.... .....+..+..+..-.|++++|..+..+..+..-.-+...+. .+ ...+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34566666555544332 344556666777777788888887777665542222222222 22 123444
Q ss_pred ccc--HHHHHHHHHHhhhccCCC-----CChHHHHHHHHHHHhcCCHHHHHHH----HHhc-CCCCCH--HH--HHHHHH
Q 042503 347 AGL--VEKARELFASMTGLHSIV-----PNLEHYGCMVDVLGRSGCVREAYDL----IRSM-SIRPNA--AI--WGSLLS 410 (477)
Q Consensus 347 ~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~-~~~p~~--~~--~~~l~~ 410 (477)
.|+ ....+..|.......... +-..++..+..++.+ .+.+..- +.-. ...|.. .. +..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 553 223333333333211111 112233334444443 3333222 2211 112222 22 225666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC--CchHH---HHHHH--HHhcCCchHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWN--SGNYV---LLSNI--YAEGGRWDDAETLRMW 461 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---~l~~~--~~~~g~~~~A~~~~~~ 461 (477)
.....|+.++|...+.++..+...+ ...|. ..+.. -...|+.++|.....+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 7777888888888888877654222 11122 22222 2255777777666555
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=4.8 Score=35.16 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM----SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
|.-=..-|.+..++..|...|.+. .-.|| ...|+.-..+-...|++..|+.-..+++..+|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333445567777888888888776 11333 356666666667788999999999999999999999999889998
Q ss_pred HhcCCchHHHHHHHHHH
Q 042503 447 AEGGRWDDAETLRMWMR 463 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~ 463 (477)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 88888888887776654
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.28 E-value=0.74 Score=40.09 Aligned_cols=119 Identities=21% Similarity=0.163 Sum_probs=69.4
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a 421 (477)
....|.++.|++.|...++. -++....|..-..++.+.++...|++-+... .+.||.. .|-.-..+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34567777777777777632 2445555555566667777777777766665 5555542 233333344556777777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+.+..+.+++-+ ..+-..+-.+.-+.+..++-...+++.++.
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 7777777766642 334444455555555555555555554443
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.05 E-value=4.8 Score=30.06 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHhc-C-CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 368 PNLEHYGCMVDVLGRSGC---VREAYDLIRSM-S-IRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
++..+--.+.-++.+..+ ..+.+.++++. . -.|+. ....-|.-++.+.|+++.++++++.+++.+|++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 444444444445554443 33445555555 2 22322 2333344556666666666666666666666544
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.91 E-value=41 Score=32.96 Aligned_cols=272 Identities=12% Similarity=0.054 Sum_probs=149.2
Q ss_pred hHHHHHHHHhcCC-CChhhHHHHHHH-----HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhccC--
Q 042503 182 VDKGLYLFREMRE-RSVVSWNLMISS-----LGKSGRDSEALRLFHEMRD-------QAFELDEATVVAVLPICARLG-- 246 (477)
Q Consensus 182 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-- 246 (477)
...|.+.++...+ .++..-..+... +....+.+.|+.+|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777776665 333333333322 3345678888888888766 44 2223444555555533
Q ss_pred ---cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc---CChHHHHHHhccCCC-CCceeHHHHHHHHH----hcCCc
Q 042503 247 ---AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC---GILDTARNVFKEIPR-KNVVSWNAMISGLA----FNGRG 315 (477)
Q Consensus 247 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~ 315 (477)
+...|..++....+.|. ++... .+...+... .+...|..+|....+ ..+..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 45568888888888874 33333 233333322 356788888887664 33333333333332 23467
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH---HHh----cCCHHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV---LGR----SGCVRE 388 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~ 388 (477)
..|..++++..+.| .|....-...+..+.. +.++.+...+..+.+ .+.......-..++.. ... ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 88888888888888 4443333333334444 666665555555542 3222111111111111 111 225566
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--CchHHHHHHHH
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRTH----GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG-G--RWDDAETLRMW 461 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~ 461 (477)
+...+.+...+-+......+...|..- .+++.|...|..+.... ......++.++... | .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666666664445555666666555432 36778888888877666 55666666665532 1 15778888877
Q ss_pred HHhCC
Q 042503 462 MRENN 466 (477)
Q Consensus 462 ~~~~~ 466 (477)
..+.+
T Consensus 535 ~~~~~ 539 (552)
T KOG1550|consen 535 ASEED 539 (552)
T ss_pred HHhcC
Confidence 76643
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.88 E-value=9.8 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCC---------CCcchHHHHHHHHHhcCC-CchHHHHHHHHHhCCCCCCcccHHH
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRN---------PSVLLFNSMIKAYSLNGP-SEEPVKLFALLKNLGIWPDEYTFAP 105 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ 105 (477)
..+.++.-.+.-+++.....+++.+.. .+...|+.++.+..+... --.+..+|+.|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666667777777777776643 445567777777755544 3456677777777777777778888
Q ss_pred HHHHhhcc
Q 042503 106 LLKACLGV 113 (477)
Q Consensus 106 l~~~~~~~ 113 (477)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88776654
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.76 E-value=2.1 Score=28.39 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=33.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCchHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSG---NYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
...+.++|+..|+++++..++.+. ++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888877655444 4445666778888888877663
No 366
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.55 E-value=61 Score=38.59 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-PSVLLFNSMIKAYSLNGPSEEPVKLFALLKN 93 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 93 (477)
.++......+...|......|.--.+|++-.. |. +.....|.+.|.+++|..+|++...
T Consensus 2451 ~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~e----T~~a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2451 KGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPE----TMVALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHH----HHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 34556666777777777766666666654221 22 2333456667777777777776543
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.65 E-value=2.2 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+..++..+...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999988764
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.61 E-value=57 Score=33.57 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhC
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKNL 94 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (477)
.-|..|+..|...|..++|++++.+..+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35889999999999999999999998873
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.60 E-value=33 Score=31.21 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 194 (477)
..+..+.+.|..+|+++.|++.|.+..+ ..+..|-.++..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566778889999999999999998665 3344555666666667777776666655543
No 370
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.46 E-value=39 Score=31.50 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCCCch
Q 042503 53 ATKIFNQMRNPSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 53 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (477)
...+.+.+..++...-....+++...+....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a 118 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQA 118 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHH
Confidence 3334444444444445555555555544333
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.96 E-value=5.1 Score=28.05 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 413 RTHGHVELAEHAVKELINLEPWN---------SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+.||+..|.+.+.+..+....+ ..+...++......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888877777766543111 123445666777888888888888877653
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.74 E-value=5.2 Score=37.87 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=52.0
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
.|+...|...+....-......+ .....|.....+.|...+|..++.+. .+ ...+.++..+++++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555666555554421111111 12233444555555555666555444 11 23334555666666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
++.+.++.|.++.+-+.|...-+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 66666666666666555554433
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.43 E-value=2.6 Score=24.41 Aligned_cols=26 Identities=4% Similarity=0.026 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhh
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHK 29 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 29 (477)
.|.++|...|+.+.|+.+++.++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999999998665
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.04 E-value=57 Score=32.48 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=90.1
Q ss_pred HHHHHHhh-cCCCchhHhHHHHHHHHhhcccchh-----HHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHH--
Q 042503 3 RKILRLLH-GRNTRTHLTQIHAHFLRHKLHQSNL-----ILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNS-- 70 (477)
Q Consensus 3 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-- 70 (477)
.++.+.+. +..+++.|+..++......-.++.. ....++..+.+.+... |...+++..+ .....|..
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 34555555 6778899998888665443222211 2233456666655544 8887776554 11222332
Q ss_pred --H-HHHHHhcCCCchHHHHHHHHHhCC---CCCCcccHHHHHHHhh--ccCCchhHHHHHHHHHHhcc---------cC
Q 042503 71 --M-IKAYSLNGPSEEPVKLFALLKNLG---IWPDEYTFAPLLKACL--GVGDLRVGQCVHGEIIRSGF---------ER 133 (477)
Q Consensus 71 --l-~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~ 133 (477)
+ +..+...+++..|.+.++.+.... ..|....+..++.+.. +.+..+.+.+.++.+..... .|
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 2 222223478999999998887642 2333444445555543 45666777777777754322 22
Q ss_pred cchHHHHHHHHH--HhcCChhhHHHHhcccC
Q 042503 134 FGSIRIGVVELY--TSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 134 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 162 (477)
...++..+++.+ ...|+++.+...++++.
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566666554 45677777777666554
No 375
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=43 Score=32.08 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPW-NSGNYVLLSNIYA-EGGRWDDAETLRMWM 462 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 462 (477)
.+.+.|-+..|.++.+-+++++|. ||-....+++.|+ ++.+++=-+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666666666666666665 5666666666654 555555555555554
No 376
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.75 E-value=2.5 Score=34.73 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=24.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.+|.+.+.+++.+++++-|.....|..++..-.++|+.+.|.+-+++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344444444445554444444444444444444445555544444444444
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=19 Score=30.95 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhhccccHHHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFV-------GVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~ 356 (477)
+.+-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++..-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444566777888888888888777777766543 234445555554443333
No 378
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.97 E-value=5.1 Score=34.53 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
+.|+.++|..+|+.++.+.|.++.....++......+++-+|-+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444444444444444444444444444444444444444444443
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.55 E-value=40 Score=29.67 Aligned_cols=148 Identities=12% Similarity=-0.068 Sum_probs=72.8
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-----
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG----- 384 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 384 (477)
+..+|..+|+.+.+.|.++ ....|...+.. ..+..+|...++++. ..|..+.......+...|..-.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa-~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAA-KLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3455666666555544221 12223322322 235666666666666 3443332222333333333321
Q ss_pred --CHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC--------
Q 042503 385 --CVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 385 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
+...|...+.++-..-+......+...|.. ..|.++|...|+++-+.+. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223566666666222244444444444422 2367777777777777665 44444555 444444
Q ss_pred -------CchHHHHHHHHHHhCCCc
Q 042503 451 -------RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 451 -------~~~~A~~~~~~~~~~~~~ 468 (477)
+...|...+......|.+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 666667777666665543
No 380
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=21 Score=34.28 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=64.7
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG 114 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 114 (477)
...+.++..+.++|-.++|+++--. |+ .-.....+.|+.+.|.++..+.. +..-|..|.++....+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D---~d-----~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD---PD-----QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC---hh-----hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 3455666667777777777664321 11 11223344556666655543332 3344666666666666
Q ss_pred CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
++..|.+.|..... +..|+-.+...|+.+....+-....+.. -.|.-..+|...|+++++.+++.+-.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 66666666654432 2233334444444433333222222200 01222234555677777777666543
No 381
>PRK10941 hypothetical protein; Provisional
Probab=79.32 E-value=15 Score=31.73 Aligned_cols=66 Identities=8% Similarity=-0.057 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
+.+-.+|.+.++++.|++..+.+ .+.|+ +.-+.--+-.|.+.|.+..|..-++..++..|++|.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 44566788888888888888888 45554 34566667778888999999999999988888877643
No 382
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.77 E-value=41 Score=28.75 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=88.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCcccchHHHHHHHHHh----CCccchhHHHHHHHHHHHhc
Q 042503 209 KSGRDSEALRLFHEMRDQAFEL---DEATVVAVLPICARLGAVDIGQWIHSYAESS----GLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 281 (477)
+..++++|+.-|.+..+....- .......++....+.+++++....+.++..- -....+....++++..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888888888877653222 2333445666677777777776666655432 00011222335555555555
Q ss_pred CChHHHHHHhccCCC-----CCce----eHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCCH-------HHHHHHH
Q 042503 282 GILDTARNVFKEIPR-----KNVV----SWNAMISGLAFNGRGELGVELYEQMIAKGV----SPNK-------ATFVGVL 341 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~-------~~~~~l~ 341 (477)
.+.+.-..+++.-.+ .+.. +-..+...|...+.+.+..++++++...-- ..|. ..|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 555544444443221 1222 223455555566666666666666654311 1111 2234444
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH----HHHHhcCCHHHHH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV----DVLGRSGCVREAY 390 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~ 390 (477)
..|....+-.+-..++++......--|.+.....+- ....+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 455555555555555555443333334443333221 1233555666554
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.67 E-value=14 Score=30.34 Aligned_cols=78 Identities=13% Similarity=0.013 Sum_probs=54.7
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh-ccCCCCChHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG-LHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~ 379 (477)
+.+..+..+.+.+..++++...++-++.+ +.|..+-..++..++-.|++++|..-++-.-. .....+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677888889999999888877765 66777777888889999999999877766542 11223334556666544
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=39 Score=28.42 Aligned_cols=118 Identities=9% Similarity=-0.079 Sum_probs=68.7
Q ss_pred HHHhcCChHHHHHHhccCCC--CCc-eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccccHHH
Q 042503 277 FYCKCGILDTARNVFKEIPR--KNV-VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKA-TFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 352 (477)
-|....+++.|+..|.+... |++ .-|..-+.++.+..+++.+..=-++.++. .||.. ..-.+..+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 34555667777777766543 554 34555666777777888777766666554 44433 33445556667777788
Q ss_pred HHHHHHHhhh---ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 353 ARELFASMTG---LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 353 a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|+..+.+... ...+++.......|..+--..=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8877777632 2334444455555555444444445555555554
No 385
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.17 E-value=12 Score=28.60 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 386 VREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 386 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
-+.|.++.+-|| ...............|++..|.++.+.++..+|++.......+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 455666666664 234455556667889999999999999999999999999999998887765443
No 386
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.14 E-value=51 Score=29.57 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh---cCCHHHHHHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR---SGCVREAYDL 392 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 392 (477)
+.-+.++++..+.+ +.+......++..+.+..+.+...+-++++... .+-+...|...++.... .-.+++...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34456677766664 456666666777777777777777777777732 23355566665554433 2245555555
Q ss_pred HHhc---------CC---C---CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 393 IRSM---------SI---R---PN-----AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 393 ~~~~---------~~---~---p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
|.+. +. . ++ ...+..+...+.+.|..+.|..+++-+++.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5444 11 0 00 0122333333456677777777777777665
No 387
>PF15469 Sec5: Exocyst complex component Sec5
Probab=78.01 E-value=26 Score=28.23 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=59.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP-NAAIWGSLLSS 411 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~ 411 (477)
+..++..-.+......+..++++..--..+ ..-+.-+.+.|+++.++..|.+. +... ....+..+..-
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~flF~L-------P~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFLFNL-------PSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333444334445555566666655522222 13455567778888888888776 1111 33333332211
Q ss_pred HHHcCChHHHHHHHHHHH-h-c-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 412 CRTHGHVELAEHAVKELI-N-L-EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~-~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
+ +....-++..+ + + .|+ ...++..++++.+.+.+...+|.+-||+
T Consensus 133 v------e~ii~~~r~~l~~~L~~~~---------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 133 V------EKIIEEFREKLWEKLLSPP---------------SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred H------HHHHHHHHHHHHHHHhCCC---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 1 11111111111 0 0 111 5677788888888888988999988874
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.96 E-value=60 Score=30.54 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=65.2
Q ss_pred HHHHHhcCChHHHHHHhccCCC---C---------CceeHHHHHHHHHhcCCchHHHHHHHHHHH-------cCCCCCH-
Q 042503 275 VDFYCKCGILDTARNVFKEIPR---K---------NVVSWNAMISGLAFNGRGELGVELYEQMIA-------KGVSPNK- 334 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~- 334 (477)
.+.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3455567888888887765431 1 113456676666677777777766666553 3544421
Q ss_pred ----------HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 335 ----------ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 335 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
.+||. .-.+...|++-.|.+.|.+... -+..++..|-.|..+|.
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 22333 2346678888888888888873 34667777877777764
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.75 E-value=63 Score=30.39 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=68.4
Q ss_pred hhccccHHHHHHHHHHhh--hccCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhc----------CCCCC-----
Q 042503 344 CAHAGLVEKARELFASMT--GLHSIVPNL-----EHYGCMVDVLGRSGCVREAYDLIRSM----------SIRPN----- 401 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~----- 401 (477)
+.-.|++.+|.+.+-..- +..|...++ ..||.|.-.+.+.|.+.-+..+|.+. +.+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345688888888775432 122222221 12355555556666666555555443 33432
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 402 -----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 402 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.......+-.|...|++-.|.+.|.+++.....+|..|..|+.++.-.
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 223334556688999999999999999999988899999999998643
No 390
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.61 E-value=13 Score=27.81 Aligned_cols=64 Identities=8% Similarity=0.017 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHhhccc---cHHHHHHHHHHhhhccCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 331 SPNKATFVGVLTCCAHAG---LVEKARELFASMTGLHSIVPN--LEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.++..+-..+..++.+.. +..+.+.+++.+.+ .. +|+ ......|.-++.+.+++++++++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444333 34445555555552 11 121 122223444555555666665555544
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.52 E-value=16 Score=25.58 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
.+.......|++++|...+++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455566777777777777776554
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.51 E-value=22 Score=26.52 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 420 LAEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 420 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
.+.++|+.+.+.+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888886544 55566788888888888888888888765
No 393
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=47 Score=28.71 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=36.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhhccCcccchHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEAT-------VVAVLPICARLGAVDIGQW 253 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~ 253 (477)
+.+...+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 45666788999999999999999888776554 4455666777776654433
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.84 E-value=15 Score=30.00 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
...|++.++..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5678888888888888888888888888888888888
No 395
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.28 E-value=45 Score=27.95 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhc-CCchHHHHHHHHHHH--cCCCCCH---HHHHHHHHHhhcc
Q 042503 274 LVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN-GRGELGVELYEQMIA--KGVSPNK---ATFVGVLTCCAHA 347 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~--~~~~~~~---~~~~~l~~~~~~~ 347 (477)
-++.|...|++..|-..... +...|-.. .++++|+..|++.-+ .|-..+. ..+.-+...-...
T Consensus 99 aieIyt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 34555666666555443222 23333322 456666666666544 1212222 2233333344567
Q ss_pred ccHHHHHHHHHHhhhccCCCCC
Q 042503 348 GLVEKARELFASMTGLHSIVPN 369 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~ 369 (477)
+++.+|+.+|+++. ...+..+
T Consensus 168 eqY~~Ai~iyeqva-~~s~~n~ 188 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVA-RSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHH-HHhccch
Confidence 89999999999987 3433333
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.78 E-value=55 Score=28.27 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=72.4
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhhccCccc-chH
Q 042503 178 KKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLF----HEMRDQAFELDEATVVAVLPICARLGAVD-IGQ 252 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~ 252 (477)
+.+++++|++++..- ...+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666655332 23344455544433332 33333455666655555555544333211 122
Q ss_pred HHHHHHHH----hCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 042503 253 WIHSYAES----SGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328 (477)
Q Consensus 253 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 328 (477)
++.+.+.+ .+....++.....+...|.+.|++.+|+..|-.-..++...+..++......|...+.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 22222221 1222456777888899999999999888877655444433332233333333333322
Q ss_pred CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+...-..++ -|...++...|...++...+
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222222233 34556777878777766653
No 397
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=74.72 E-value=8.6 Score=33.33 Aligned_cols=80 Identities=6% Similarity=0.083 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGS-LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLL 442 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (477)
+..|+..|...+.--.+.|.+.+.-.+|.+. ...| |+..|-. ...-+...++++.+..++.+.++.+|.+|..|..+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4556666666665555666777777777777 4444 3444433 23345678899999999999999999999988876
Q ss_pred HHH
Q 042503 443 SNI 445 (477)
Q Consensus 443 ~~~ 445 (477)
.+.
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 654
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.65 E-value=2.9 Score=38.47 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=71.3
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEH-YGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHG 416 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 416 (477)
-+..+...++++.|..++.++.+. .|+-.. |..=..++.+.+++..|+.=+.+. ...|+. ..|..=+.++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 355567788899999999998852 454433 333347888889988888776666 555554 34555556777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHH
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLL 442 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (477)
.+.+|...|+....+.|+++..-..+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 88899999999999999877654443
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.51 E-value=41 Score=28.99 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=36.6
Q ss_pred HHHHHhcCChHHHHHHhc----cCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-----
Q 042503 275 VDFYCKCGILDTARNVFK----EIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA----- 345 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----- 345 (477)
|.+++..|++.++....- .-.+-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555666665544322 21121222333334445555555555555554444211222233444443332
Q ss_pred ccccHHHHHHHH
Q 042503 346 HAGLVEKARELF 357 (477)
Q Consensus 346 ~~~~~~~a~~~~ 357 (477)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345555555544
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.15 E-value=63 Score=28.59 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCCCCch
Q 042503 420 LAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~ 438 (477)
.|.+...++++.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 4677778888888765543
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.10 E-value=6.6 Score=23.90 Aligned_cols=28 Identities=14% Similarity=-0.036 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 438 NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
....++-++.+.|++++|.++.+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4667889999999999999999999875
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.12 E-value=76 Score=29.31 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=8.8
Q ss_pred hcCCchHHHHHHHHHHHc
Q 042503 311 FNGRGELGVELYEQMIAK 328 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~ 328 (477)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 444555555555555444
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.86 E-value=15 Score=27.10 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHh
Q 042503 84 PVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (477)
..+.++.+...++.|++......+++|-+.+|+..|.++|+-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455666666777888888888888888888888888888776543
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.69 E-value=25 Score=33.70 Aligned_cols=134 Identities=12% Similarity=-0.028 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHhhcc--ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH--HHH
Q 042503 331 SPNKATFVGVLTCCAHA--GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA--AIW 405 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~ 405 (477)
-|+..+...++.-.... ...+-+-.++-.|. ....|--.+.|.-..-+.-.|+...|.+.+... ...|-. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35555555544333221 22344555555555 222332222232222234578999999988887 444432 355
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..|.....+.|-...|-.++.+.+.+....|-++..++++|....+.+.|++-++...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 6677888888888899999999999887778899999999999999999999999887653
No 405
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.17 E-value=33 Score=24.54 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=51.2
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFA 89 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (477)
.-.-..++|..|.+++...+-. ...+.-..+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++..-+.
T Consensus 17 tG~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 17 TGHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp HTTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3445568888999999888742 23333344556778899999955544555588877776644 36677677777777
Q ss_pred HHHhCC
Q 042503 90 LLKNLG 95 (477)
Q Consensus 90 ~~~~~~ 95 (477)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 676655
No 406
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.67 E-value=66 Score=27.79 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=79.8
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHH----HhCCCCCCcccHHHHHHHhhccCCch-hHH
Q 042503 46 TLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALL----KNLGIWPDEYTFAPLLKACLGVGDLR-VGQ 120 (477)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 120 (477)
+++++++|++++-. -...+.+.|+...|.++-..+ .+.+++++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665542 222344555555444443333 23355555555555555554433221 233
Q ss_pred HHHHHHHH---hc--ccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC
Q 042503 121 CVHGEIIR---SG--FERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER 195 (477)
Q Consensus 121 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 195 (477)
++.+.+++ .| ..-++.....+...|.+.|++.+|...|-.-.+++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33343333 22 2235677888899999999999999888776666655554455444444443333
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQ 226 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 226 (477)
+.. ....+--|.-.++...|...+....+.
T Consensus 141 dlf-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLF-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHH-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111 122333455667788888877776544
No 407
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.14 E-value=79 Score=31.55 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-C---------Cc-eeHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCCCHHHHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPR-K---------NV-VSWNAMISGLAFNGRGELGVELYEQMIAK--GVSPNKATFV 338 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~-~---------~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~ 338 (477)
..++-.|....+++...++.+.+.. | ++ ..|.-.++--.+-|+-++|+...-.+.+. .+.||.....
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~ 284 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLC 284 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeee
Confidence 4445555555555555555554433 2 22 12322233233456777777776666653 2445533221
Q ss_pred H-------HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-CHHHHHHH------HHhc-CCCCCH-
Q 042503 339 G-------VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-CVREAYDL------IRSM-SIRPNA- 402 (477)
Q Consensus 339 ~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~------~~~~-~~~p~~- 402 (477)
. +-..|...+..+.|...|++.-+ +.|+..+--.+.-.+...| .++.-.++ +..+ +.+-..
T Consensus 285 GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 285 GRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALE 361 (1226)
T ss_pred chhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHH
Confidence 1 11234455667788888887764 3454332211222222222 12211111 1111 111111
Q ss_pred --HHHH---HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 403 --AIWG---SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 403 --~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
..|- ..+.+-.-.+|+.+|.+..+.+.++.|+..-.-..+.
T Consensus 362 klq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~me 407 (1226)
T KOG4279|consen 362 KLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTME 407 (1226)
T ss_pred HHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHH
Confidence 1111 1223345578999999999999999987544433333
No 408
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.78 E-value=41 Score=28.97 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=26.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
|.+++..|+|.+++...-+.-+..-+......-..|-.|.+.+.+..+.++-..-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 566667777777666554433221122223333334444555555544444444333
No 409
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=68 Score=27.48 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=29.8
Q ss_pred cCChH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 415 HGHVE-LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 415 ~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
.|++. +-+++.+.++..+..+-.+|..--+++...+.++.-+.+..+|++..+..+++
T Consensus 125 l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 125 LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 33443 44455555555554455555555555555555555555555555555544443
No 410
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.41 E-value=72 Score=31.17 Aligned_cols=85 Identities=11% Similarity=0.021 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHHhc-C-CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 381 GRSGCVREAYDLIRSM-S-IRPN------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.+..++..+.++|..- . +..| ...+..|.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|..
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4556777777777655 1 1112 234566666777888899999999999999988888888888888888888
Q ss_pred hHHHHHHHHHHhC
Q 042503 453 DDAETLRMWMREN 465 (477)
Q Consensus 453 ~~A~~~~~~~~~~ 465 (477)
++|+..+......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9988887766543
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.86 E-value=12 Score=24.94 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=20.5
Q ss_pred ccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 391 (477)
...+.++|+..|....++..-+|+. .++..++.+|...|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555322212211 133444455555555555444
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.74 E-value=25 Score=24.02 Aligned_cols=66 Identities=9% Similarity=0.045 Sum_probs=42.0
Q ss_pred HhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHH
Q 042503 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 18 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
+.++++..+..|+ .+..-...+-.+-...|+.+.|++++..++ ..+..|...+.++-..|+-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3456666666663 233333333333335678888888888888 67777888888877777655443
No 413
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.64 E-value=90 Score=28.47 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCC------
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSL------------LSSCRTHGHVELAEHAVKELINLEPWN------ 435 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~p~~------ 435 (477)
..|...+-.+|++++|..++.+.++ .||.++ ++.|...+|+-.|.-+-+++....-++
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 3466677889999999999888732 233222 456778889999888877776543222
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 436 -SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
...|..+++...+.+.+=.+-+.++...+.|....
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 23577777777788888888888888877765444
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.38 E-value=32 Score=25.49 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH 364 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (477)
..+-+.......+.|+.......+++|.+.+|+..|.++|+-++.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44455666667788888888888899999999999999998887433
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.87 E-value=38 Score=24.47 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHh
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKN 93 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 93 (477)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3478888888888888888888888776
No 416
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=68.72 E-value=44 Score=24.55 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHH----HHHHHHHhcCCchHHHHHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELI-------NLEPWNSGNYV----LLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
..|..++...|++++++...++++ +++.+....|. .-+.++...|+.++|.+.|+..
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 334445555666655554444443 23343333333 3345566778888888777643
No 417
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.60 E-value=30 Score=29.66 Aligned_cols=58 Identities=22% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+-.++.+.++++.|....++.+.++|.++.-+..-+-+|.+.|...-|++-++..++.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3455677788888888888888888888877778888888888888888877776655
No 418
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.48 E-value=35 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
.-|..|+..|...|.+++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.29 E-value=25 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
..|++.+|..++..+...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666677777777777776666666
No 420
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.87 E-value=1.8e+02 Score=30.84 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=21.3
Q ss_pred HhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHH
Q 042503 157 VFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSL 207 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 207 (477)
+.+.+.++|..+-..-+..+.+.+..+....+...+.+++...-...+.++
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333334455555555555555555433223333333334433333333333
No 421
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.20 E-value=1.5e+02 Score=29.68 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHhcCCCCC
Q 042503 380 LGRSGCVREAYDLIRSMSIRPN 401 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~ 401 (477)
+...|++++|++.++++++-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 4577888888888888876663
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.92 E-value=49 Score=23.73 Aligned_cols=76 Identities=7% Similarity=-0.056 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
..++|..+.+.+...+- ....+-.+-+..+.+.|++++|+..=.....||...|.+|-. .+.|--+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 34555555555554432 122222233344555666666633333333355555544322 34444444444444333
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.88 E-value=28 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=22.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG 114 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 114 (477)
+-.|.+.|.+++|.+++++... .|+......-+...++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 3456677777777777777665 244444444444444443
No 424
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.81 E-value=21 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=8.6
Q ss_pred HHHHHHHHcCChHHHHHH
Q 042503 407 SLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~ 424 (477)
.+...+...|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.35 E-value=18 Score=21.39 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHH
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSV 43 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 43 (477)
++-..-+.|-++++..+++.|.+.|+..++..+..++..
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 445566788888999999999999998888888887764
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.19 E-value=1.3e+02 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=32.3
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 199 SWNLMISSLGK---SGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 199 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
.+..++.++.+ .++++.|+.++..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555554 4789999999999999988877555555554444444
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.05 E-value=54 Score=30.33 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 375 CMVDVLGRSGCVREAYDLIRSMSI---------R-PNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~---------~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
.|++.++-.|++..|+++++.+.+ . ....++--++-+|.-.+++.+|.+.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665511 1 112344455555555666666666665543
No 428
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=64.03 E-value=58 Score=24.28 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 387 REAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 387 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
+++.+.|... ..+.|+.-...-+..--.. +...++|+.+.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555444 4455554333322221122 33566777776554 4445667788888888999999988875
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.96 E-value=46 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|...-..+...+...|++++|++.+-++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444445555555555555444444
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.10 E-value=12 Score=23.67 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=4.4
Q ss_pred HHhcCCchHHHHH
Q 042503 446 YAEGGRWDDAETL 458 (477)
Q Consensus 446 ~~~~g~~~~A~~~ 458 (477)
|...|++++|.++
T Consensus 33 llqlg~~~~a~eY 45 (62)
T PF14689_consen 33 LLQLGKYEEAKEY 45 (62)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHCCCHHHHHHH
Confidence 3333333333333
No 431
>PRK12798 chemotaxis protein; Reviewed
Probab=61.82 E-value=1.4e+02 Score=27.75 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=108.9
Q ss_pred cCChHHHHHHhccCCC----CCceeHHHHHHHH-HhcCCchHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccccHH
Q 042503 281 CGILDTARNVFKEIPR----KNVVSWNAMISGL-AFNGRGELGVELYEQMIAKGVSPN----KATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~ 351 (477)
.|+.+++.+.+..+.. +....|-.|+.+- ....++.+|+++|+...-. .|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888887764 2334566666543 3456888899999887653 332 223444455567788888
Q ss_pred HHHHHHHHhhhccCCCCChHHHHH-HHHHHHh---cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGC-MVDVLGR---SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
++..+-......+...|-..-|.. +...+.+ .-..+.-..++..|.-.--...|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 876666555534433444333322 2223333 334455556666663222346888888888999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----hcCCchHHHHHHHHHHh
Q 042503 428 LINLEPWNSGNYVLLSNIYA-----EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 464 (477)
+..+... ...-...+..|. -..+.++|.+.+..+-.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9887632 333333333332 33556667666665543
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.95 E-value=2.1e+02 Score=29.74 Aligned_cols=113 Identities=10% Similarity=0.021 Sum_probs=64.2
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCC-CC-c-----chHHHHHHHHHhcCCC--chHHHHHHHHHhCCCCCCcccHHH-
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRN-PS-V-----LLFNSMIKAYSLNGPS--EEPVKLFALLKNLGIWPDEYTFAP- 105 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~-----~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~- 105 (477)
-|..|+..|...|+.++|+++|....+ +. . ..+..+++-+.+.+.. +-.++.-+...+..-.-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477889999999999999999988766 21 1 2233344444444444 444444444433221000111111
Q ss_pred -----------HHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhc
Q 042503 106 -----------LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSC 148 (477)
Q Consensus 106 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (477)
.+-.+......+-+...++.+....-.++....+.++..|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1222345556666777777777765555666777777776643
No 433
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.62 E-value=1e+02 Score=25.83 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC---ChHHH--HHHHHHHHhcCCHHHHHHHHHhc---CCCCC
Q 042503 330 VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP---NLEHY--GCMVDVLGRSGCVREAYDLIRSM---SIRPN 401 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~---~~~p~ 401 (477)
+.+...-++.|+--|.-...+.+|...|..- .|+.| +..++ ..-|......|+.++|++..+.. -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 4555556666666666555566666655433 23333 22222 34466677888888888888777 22233
Q ss_pred HHHHHHHH----HHHHHcCChHHHHHHHHHHH
Q 042503 402 AAIWGSLL----SSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 402 ~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 429 (477)
...+..+. --..+.|..++|+++.+.-+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222221 22456777777777776643
No 434
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=60.55 E-value=21 Score=31.07 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhcCCchHHHHHHHHHHhC
Q 042503 398 IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVL-LSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 398 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
...|+..|...+....+.|.+.+...++.++....|.+.+.|.. -..-|...++++.+..++.+-+.-
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34567778888777778889999999999999999999999887 455577889999998888554443
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.40 E-value=51 Score=28.21 Aligned_cols=56 Identities=11% Similarity=-0.042 Sum_probs=28.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLE------PWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
.+...|...|++++|.++|+.+.... .....+...+..++.+.|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455556666666666666554321 111334444555556666666655554433
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.38 E-value=54 Score=25.27 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC
Q 042503 86 KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG 149 (477)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (477)
++.+.+.+.|+++++. -..+++.+...++.-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455566667665544 34456666667666888888888888777766555444555555555
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.18 E-value=1.2e+02 Score=26.69 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH----------hcCCHHH
Q 042503 319 VELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG----------RSGCVRE 388 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 388 (477)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+.. |..-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46788888888888888888888778888888888888888873 2222444554443 2467777
Q ss_pred HHHHHHhc
Q 042503 389 AYDLIRSM 396 (477)
Q Consensus 389 A~~~~~~~ 396 (477)
..++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 77777664
No 438
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.06 E-value=53 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=18.7
Q ss_pred hcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCc
Q 042503 280 KCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (477)
..|+.+.|..++..+. ..+..|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 3355555555555555 5555555555555555443
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=98 Score=31.63 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
.+++..+.+.|-++-|+.+.+.-. +- ...+...|+.+.|++.-+++ .+..+|..|.......|+.+
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~-----tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDER-----TR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcc-----hh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchH
Confidence 345555555665555554443211 11 11233456666666554442 24556677777777777777
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
-|+..|++.+. |+.|-..|.-.|+.++-.++.+-...+.|..+... ...-.|+.++-..+++..
T Consensus 690 IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~q---nalYl~dv~ervkIl~n~--- 753 (1202)
T KOG0292|consen 690 IAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQ---NALYLGDVKERVKILENG--- 753 (1202)
T ss_pred HHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHH---HHHHhccHHHHHHHHHhc---
Confidence 77777766651 33344455666666666666555544444332211 112345555554444432
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 432 EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..-+-+|.. -...|.-++|.++.++.-..
T Consensus 754 -g~~~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 754 -GQLPLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred -CcccHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 111111111 12345556666666666543
No 440
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.85 E-value=38 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=13.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
-.|...|+.+.+.+-|+.-..+.|.+
T Consensus 80 lLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 80 LLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHhhcCChHHHHHHHHHhhhhCccc
Confidence 33445555555555555555555543
No 441
>PRK09857 putative transposase; Provisional
Probab=59.79 E-value=74 Score=28.07 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+..++......++.++..++++...+..|.......+++.-+.+.|.-+++.++.++|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44455555566777777777777776666666677788888888888888888888998888764
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.48 E-value=68 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 042503 378 DVLGRSGCVREAYDLIRSMSIRPNAAIWGS 407 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 407 (477)
..|.+.|.+++|.+++++.-..|+......
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 345566666666666666522444433333
No 443
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.27 E-value=26 Score=18.67 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.++.|..+|++.+...|. +..|..++.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 467777888888777663 666666554
No 444
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.12 E-value=24 Score=29.33 Aligned_cols=56 Identities=29% Similarity=0.380 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 380 LGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
..+.++.+.|.+++.+. ...| ....|..+...--+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556667777777666 3333 34567777777777777777878888777777765
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.09 E-value=17 Score=23.05 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 387 REAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 387 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
+...++++.+ ..+-|...-..++.++...|++++|.++++++.
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444 234455666788999999999999999988764
No 446
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.03 E-value=1.5e+02 Score=27.25 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccccHHHHHHHHHHhh
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA-HAGLVEKARELFASMT 361 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 361 (477)
+..+.+.|-+..|.++.+-+......-|.......|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3445566666666666666666553335544444555443 4555655555555543
No 447
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.91 E-value=1.2e+02 Score=26.41 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh-----cCCHHHHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR-----SGCVREAY 390 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~ 390 (477)
++-...++-....-......-|..++. ....+.+|+.+|+....+..+-.|..+...+++.... ..-+-|.+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 391 DLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL--EPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 391 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
.++..- +..++..+...++..++..+++..-.++++..... ...|++.|..+++.-...|+..-..+++++
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 448
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.29 E-value=13 Score=32.92 Aligned_cols=83 Identities=14% Similarity=0.038 Sum_probs=52.0
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 388 (477)
...|.++.|++.+...+..+ ++....|..-..++.+.+.+..|++=++...+ +.||. ..|-.-..+....|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHH
Confidence 34567777777777777765 56666666666677777777777777766663 23332 223333334445677777
Q ss_pred HHHHHHhc
Q 042503 389 AYDLIRSM 396 (477)
Q Consensus 389 A~~~~~~~ 396 (477)
|.+.|...
T Consensus 201 aa~dl~~a 208 (377)
T KOG1308|consen 201 AAHDLALA 208 (377)
T ss_pred HHHHHHHH
Confidence 77777666
No 449
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=57.95 E-value=70 Score=23.19 Aligned_cols=43 Identities=9% Similarity=-0.000 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
.+.+.+.+...+.|..+..+..++.-+.....++++..--++-
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3566677777777777666666666655555566655554443
No 450
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.31 E-value=2.6e+02 Score=29.62 Aligned_cols=239 Identities=10% Similarity=0.012 Sum_probs=115.3
Q ss_pred HHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCc
Q 042503 55 KIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF 134 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (477)
.+.+.+.++++..-...+..+.+.+.. .+...+..+.+. ++...-...+.++...+........+..++.. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 444444556666666666666666543 344444444432 33333334444443332221122233333332 45
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChh
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDS 214 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (477)
..+....+..+...+.. ....+...+.++|..+-...+.++.+.+..+. +.....+++...-...+.++...+..+
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 55555666666544321 12344555566777777777777766655432 333445566666666777777766544
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 215 E-ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 215 ~-a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
. +...+..+.. .+|...-...+.++...|....+...+..+.+ .++..+....+.++...+..+....+...
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAADVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccccchHHHHHHH
Confidence 3 3444444443 34555555666666666655433333322222 22333434444455444443322222223
Q ss_pred CCCCCceeHHHHHHHHHh
Q 042503 294 IPRKNVVSWNAMISGLAF 311 (477)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~ 311 (477)
+..++...-...+.++.+
T Consensus 847 L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTR 864 (897)
T ss_pred hcCCCHHHHHHHHHHHhc
Confidence 333444443444444444
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.24 E-value=1.4e+02 Score=26.38 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHh----------cCChHHHHHHH
Q 042503 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCK----------KGDVDKGLYLF 189 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~ 189 (477)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+..++.+++.+...... +..++..||. .|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456777777777777776666666666677777777777777652211 3344443333 68888888888
Q ss_pred HhcCCCChhhHHHHHHHHH
Q 042503 190 REMRERSVVSWNLMISSLG 208 (477)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~ 208 (477)
+.-+.-|+...-.++..+.
T Consensus 342 Q~yp~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVADSLR 360 (370)
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 7777666655544444443
No 452
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.74 E-value=1.4e+02 Score=26.21 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
++.....|..+|.+.+|.++.++. ...| +...+..++..+...||--.+...++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567788999999999999998 5555 45667778888999999777777777663
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.19 E-value=91 Score=28.92 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=38.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHhcCC-----------CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 169 RNLMIHGFCKKGDVDKGLYLFREMRE-----------RSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
...|++.++-.||+..|+++++.+.- -.+.+|-.+.-+|...+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777666542 234466677778888888888888887754
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.98 E-value=27 Score=30.47 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAV 238 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 238 (477)
-|+..|....+.||.++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888999999999999999888876655555443
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.73 E-value=2e+02 Score=27.90 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=26.0
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccccHHHHHHHHHHh
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA-HAGLVEKARELFASM 360 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 360 (477)
.+.+.|-+..|.++.+-+.+....-|+.....+|..|+ +..+++-.+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555555443324444444444432 444555555555544
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.37 E-value=29 Score=32.27 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSG 384 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 384 (477)
+..+...+.++.|..++.+.++.. +.++..|..=..++.+.+++..|..=+..+.+. .|+ ...|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHH
Confidence 344566788999999999999873 334444444457888999999998888777742 233 223333334445556
Q ss_pred CHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH
Q 042503 385 CVREAYDLIRSM-SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 414 (477)
.+.+|...|+.. .+.|+..-+..++.-|-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 778888888877 778888877777766644
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.14 E-value=19 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 380 LGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
...+|+++.|++...+.+ +..+|..|+.....+|+.+-|+..|++...
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345666666666666553 455666666666666666666666666543
No 458
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=54.96 E-value=98 Score=28.87 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc---CC
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---GC 385 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 385 (477)
+...|++.+|+..|+.++.. ..+.......+.+++.+++...++ + +...-+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccc
Confidence 34678899999988887653 222222333444555555544432 1 111111111111 11
Q ss_pred HHHH------HHHHHhcCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 386 VREA------YDLIRSMSIRPNAA--IWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 386 ~~~A------~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.++. -.+|...+++|.+. ++...+..+.+.+++..|..+.+++++++|.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 2222 22333335566553 5666777788999999999999999999885
No 459
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=52.98 E-value=1.4e+02 Score=26.70 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCC--------hHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHHHH
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPN--------LEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAAIW 405 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 405 (477)
+.......+.+++..++..+......+.+ ..+...+.+.|.+.|+.++-..+.... +........
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhcCCCCCchHH------HHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 406 GSLLSSCRT-HGHVELAEHAVKELINLEPWNSGNYV------LLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 406 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
..++..+.. .+..+.-+.+..+.++......+++. .++..|...+++.+|+.+...+...--+-+.-..+||
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLve 169 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVE 169 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceee
No 460
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.24 E-value=2.1e+02 Score=26.73 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=106.5
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhH--HHhHHHHHhhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCC
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLI--LAHFVSVCGTLNEIKYATKIFNQMRNPSV---LLFNSMIKAYSLNGP 80 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 80 (477)
+......|+++ +.+.+++.|..++... ....+...+..|+.+-+.-+++.-..++. ...+. +...+..|+
T Consensus 6 L~~A~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHHHCCC
Confidence 33445566655 4555556676665432 34456666778888877777765443332 22233 344456677
Q ss_pred CchHHHHHHHHHhCCCCC----CcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchH--HHHHHHHHHhcCChhhH
Q 042503 81 SEEPVKLFALLKNLGIWP----DEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI--RIGVVELYTSCGQMDDG 154 (477)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A 154 (477)
.+.+..++ +.|... +..-.+ .+...+..|+. ++++.+++.|..|+... -...+...+..|+.+-+
T Consensus 81 ~~~v~~Ll----~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 81 VKAVEELL----DLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred HHHHHHHH----HcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 65544444 333211 111122 22333445554 45666667777665432 12344555677887777
Q ss_pred HHHhcccCCC---chHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042503 155 MKVFDEMSHR---DVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVS---WNLMISSLGKSGRDSEALRLFHEMRDQAF 228 (477)
Q Consensus 155 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 228 (477)
..+++.-... |..-. +-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+.+.+.|.
T Consensus 152 ~~Ll~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 152 ELLIDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred HHHHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 7777654432 22112 23334455677776666666544433221 123444344556554 3444555666
Q ss_pred CCCH
Q 042503 229 ELDE 232 (477)
Q Consensus 229 ~~~~ 232 (477)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 6653
No 461
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=51.16 E-value=90 Score=29.67 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+..|-.++.-|...+++++|.++.+-.+ +...|.++.....+..++.-++..|-.+
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 3345555566666666666666665543 3345555555555555555544444443
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.09 E-value=2e+02 Score=26.67 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHhhccCCchhHHHHHHHHHHhcccCcch--HHHHHHHHHH--hcCChhhHHHHhcccCCC
Q 042503 108 KACLGVGDLRVGQCVHGEIIRSGFERFGS--IRIGVVELYT--SCGQMDDGMKVFDEMSHR 164 (477)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 164 (477)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999998887 554443 4445555543 556788888888876653
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.94 E-value=1e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=33.9
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
.+..+|..|...++-......|......+...|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888888877677777788888888888888888887753
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=3.5e+02 Score=29.09 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=64.9
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCH----HHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNA----AIWGS 407 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~ 407 (477)
-|..+++.+...+..+.+.++-..+.+. .+++ ..+++.+.+.....|.+-+|...+-.- ||. .....
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRq 1059 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 3556666666667777766666665532 2222 234566666777777777776665543 333 24555
Q ss_pred HHHHHHHcCChH------------HHHH-HHHHHHhcCCCCCchHHHHHHH-HHhcCCchHHHHH
Q 042503 408 LLSSCRTHGHVE------------LAEH-AVKELINLEPWNSGNYVLLSNI-YAEGGRWDDAETL 458 (477)
Q Consensus 408 l~~~~~~~~~~~------------~a~~-~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~ 458 (477)
++..++..|..+ +... +.+.+-+..|.....|..+..+ +.+.+++.+|-.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 555555555433 3333 3344434444444444444444 4466777776554
No 465
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.87 E-value=1.8e+02 Score=25.52 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=63.7
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA-------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR---- 382 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 382 (477)
+..+|..++++..+.|..+...+...+...+... .+...|...+.++.. .+ +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCC
Confidence 6778888888888877444322233444444332 133468888887773 33 44445555555533
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhcCC
Q 042503 383 SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHG---------------HVELAEHAVKELINLEP 433 (477)
Q Consensus 383 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~p 433 (477)
..++++|..+|+..-..-+......+. .+...| +...|...+.......+
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 347888888888882122233333333 444444 55555555555554443
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.99 E-value=2e+02 Score=25.72 Aligned_cols=111 Identities=18% Similarity=-0.003 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhccCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 042503 350 VEKARELFASMTGLHSI---VPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVK 426 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 426 (477)
.+.|.+.|+........ ..++.....+.....+.|..+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45666777776632111 234445555555566666655555555555445566666777777777777777777777
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCc--hHHHHHHH
Q 042503 427 ELINLEPWNSGNYVLLSNIYAEGGRW--DDAETLRM 460 (477)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 460 (477)
.+...+.....-...++..+...+.. +.+.+++.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 77764312222233333333323333 45555443
No 467
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.53 E-value=56 Score=19.32 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=22.6
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777766666554
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.43 E-value=44 Score=21.46 Aligned_cols=48 Identities=6% Similarity=0.013 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
|..+.++.++..+++..-.+.++..+.++++.+..+...|..-.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344455555555555555566666666666555544445544444443
No 469
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.38 E-value=46 Score=22.69 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=41.0
Q ss_pred HhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchH
Q 042503 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEP 84 (477)
Q Consensus 18 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (477)
...++..+.+.|+- +..- .-..-+...+.+.|.++++.++.....+|....+++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577777777743 2222 222233456678888888888888888888888888777655433
No 470
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.06 E-value=39 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.0
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 339 (477)
-|+..|....+.|++++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888888889999999998888886655555543
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.70 E-value=8.9 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.012 Sum_probs=25.2
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 445 IYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
.+..-|.-.+|-.+|++|++.|.+|+.+.++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~L 134 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDAL 134 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHH
Confidence 4667788889999999999999888876543
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.61 E-value=2.7e+02 Score=26.96 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC
Q 042503 272 NALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356667777777777777777664
No 473
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.30 E-value=2e+02 Score=25.22 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
...+..+...|++.++.+.+.+...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455556666666666666665555443
No 474
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=2e+02 Score=25.41 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhH-HHHHhccCCC-CCcchHHHHHHHHHhcC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKY-ATKIFNQMRN-PSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-~~~~~~~~l~~~~~~~~ 79 (477)
+...+.++..+.+...|. +-.-+...|.+|.......+=+-+.+.|=.-. |.++|..... .+. +.++.++-+.+
T Consensus 135 ~Llflk~F~e~Er~KLA~-~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i---~~lis~Lrkg~ 210 (412)
T KOG2297|consen 135 FLLFLKLFEENERKKLAM-LTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDI---NDLISSLRKGK 210 (412)
T ss_pred HHHHHHccCHHHHHHHHH-HHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccH---HHHHHHHHhcC
Q ss_pred CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhc
Q 042503 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (477)
.-+.-.++| ||+..+-......+...|--+-..-.-.++..-. -...-..|..-..+...+++......
T Consensus 211 md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a---~kElq~~L~~q~s~e~p~~evi~~VK 279 (412)
T KOG2297|consen 211 MDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGA---RKELQKELQEQVSEEDPVKEVILYVK 279 (412)
T ss_pred hHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCHHHHHHHHH
Q ss_pred ccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 042503 160 EMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRL 219 (477)
Q Consensus 160 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (477)
+-.+ |+..+...+-++......|.+-.++...-.-+...+|.-|+.+++.+|+.+-.+-+
T Consensus 280 ee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 280 EEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH
No 475
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.08 E-value=30 Score=30.11 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=8.4
Q ss_pred ccccHHHHHHHHHHhh
Q 042503 346 HAGLVEKARELFASMT 361 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~ 361 (477)
+.|+.++|..+|+...
T Consensus 128 ~~Gk~ekA~~lfeHAl 143 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL 143 (472)
T ss_pred hccchHHHHHHHHHHH
Confidence 4455555555555544
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.07 E-value=1.5e+02 Score=24.35 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-HHHHHHHHHhcCCchHHHHHHHHH
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN-YVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
....++..|...||++.|.++|--+++..+.|.+. |..=+..+.+.+......++++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34555566666666666666666666655444332 333334455555444444555444
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.84 E-value=1.3e+02 Score=23.13 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEATV 235 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 235 (477)
++..+...+++-.|.++++.+.+.+...+..|.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHH
Confidence 334444444444444444444444433333333
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.83 E-value=42 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=16.6
Q ss_pred CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 042503 180 GDVDKGLYLFREMRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (477)
.+.+++.++++.++.....+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334445555555555555555555555544443
No 479
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.75 E-value=1.8e+02 Score=24.69 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC-ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
++...-+.|+++++...++++...+...+..--+.+..+| ...|....+..++........ .........++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~-~~~~~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE-NKGNEKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc-ccchhHHHHHHHHHHHH
Q ss_pred ------CChHHHHHHhccCCCCCceeHHHHHHHHHhcCCc-----------------hHHHHHHHHHHH---cCCCCCHH
Q 042503 282 ------GILDTARNVFKEIPRKNVVSWNAMISGLAFNGRG-----------------ELGVELYEQMIA---KGVSPNKA 335 (477)
Q Consensus 282 ------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~m~~---~~~~~~~~ 335 (477)
.--.+.+.+++...-|....-...+-.+-..|++ +.|...|++..+ ..++|...
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Q ss_pred HHHHHHHHhh-----ccccHHHHHHHHHHh
Q 042503 336 TFVGVLTCCA-----HAGLVEKARELFASM 360 (477)
Q Consensus 336 ~~~~l~~~~~-----~~~~~~~a~~~~~~~ 360 (477)
++-.++--++ ..|+.++|.++-+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 480
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.18 E-value=21 Score=26.71 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.6
Q ss_pred HhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 042503 76 SLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKAC 110 (477)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 110 (477)
-..|.-..|..+|++|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345777899999999999998776 467766543
No 481
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=45.24 E-value=2e+02 Score=24.82 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 202 LMISSLGKSGRDSEALRLFHEMRDQA-FEL-----DEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
.+...|.+.|+.+.|-.++--+...+ ... +......++......++++.+.++.+.+...+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 45556666777777666665554332 111 22233344555555666666666666655544
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.39 E-value=63 Score=23.50 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=36.7
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChh
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIK 51 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 51 (477)
.++..+...+..-.|.++++.+.+.+...+..+....++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666666777788999999988887777777777788888877544
No 483
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.38 E-value=2.8e+02 Score=26.08 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHH
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFC 177 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 177 (477)
+..+....+.++...+..+-...+...+..++.......+.++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44455555566655555555444444444444444444444443
No 484
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.18 E-value=2.9e+02 Score=26.32 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=85.9
Q ss_pred HhcCChHHHHHHhccCCC-----CCc--e-e----HHHHHH-HHHhcCCchHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 042503 279 CKCGILDTARNVFKEIPR-----KNV--V-S----WNAMIS-GLAFNGRGELGVELYEQMIAKGVSPNKATF--VGVLTC 343 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~-----~~~--~-~----~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~ 343 (477)
.-.|++.+|++-..+|.+ |.+ . . ...++. .+...|.++.|...|....+.--..|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 446788888777766653 321 1 1 122222 334568888888888776664323333332 334556
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHH------HH----HHHHHhcCCHHHHHHHHHhc-CCCCCHHH--------
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYG------CM----VDVLGRSGCVREAYDLIRSM-SIRPNAAI-------- 404 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~l----~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-------- 404 (477)
|.+.|+-+.-.++++.+. +++..++. .+ ......++++.+|.+++.+. ... +..-
T Consensus 414 YL~~~~~ed~y~~ld~i~-----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~ 487 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG-----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACS 487 (629)
T ss_pred HHHhccHHHHHHHHHhcC-----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHH
Confidence 778888777777777665 23222221 11 11224678999999988876 222 3222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
...+...+...|+..++.+.+.-...+.
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 2333445567788888888877776544
No 485
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.59 E-value=96 Score=31.03 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=89.3
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH----------HHHHHHHhhccccHHHHHHHHHHhhhccC-CCC
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT----------FVGVLTCCAHAGLVEKARELFASMTGLHS-IVP 368 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 368 (477)
.+...++-.|....+++..+++.+.+... ||..- |...++---+.|+-++|+.+.-.+.++.| +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556666777888899999999998763 33221 22222222355788888887776665443 456
Q ss_pred ChHH-----HHH--HHHHHHhcCCHHHHHHHHHhc-CCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 042503 369 NLEH-----YGC--MVDVLGRSGCVREAYDLIRSM-SIRPNAAI---WGSLLSSCRTHGHVELAEHAVKELINLE----- 432 (477)
Q Consensus 369 ~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 432 (477)
|..+ |.- +-..|...+..+.|.++|++. .+.|+..+ +..|+.+-.+ .++...++-.-...++
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~--~Fens~Elq~IgmkLn~Llgr 356 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE--HFENSLELQQIGMKLNSLLGR 356 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh--hccchHHHHHHHHHHHHHhhc
Confidence 6433 211 122345667788899999988 77776543 3334333322 2333333222222211
Q ss_pred ---CCCCchHHHH---HHHHHhcCCchHHHHHHHHHHhCC
Q 042503 433 ---PWNSGNYVLL---SNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 433 ---p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
-.+...|..+ ..+-.-++++.+|.+.-+.|.+..
T Consensus 357 KG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 357 KGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred cchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 0011122222 233345678888888888887654
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.13 E-value=55 Score=21.01 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=25.3
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
+....++.++...++..-.++++..+.++...| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 334445556666665555666666666666665 344445544444443
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.54 E-value=99 Score=30.45 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=43.2
Q ss_pred hHHHHHhhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhcCCCc------hHHHHHHHHHhCCCCCCcccHHHH
Q 042503 39 HFVSVCGTLNEIKYATKIFNQMRN------PSVLLFNSMIKAYSLNGPSE------EPVKLFALLKNLGIWPDEYTFAPL 106 (477)
Q Consensus 39 ~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 106 (477)
.++.+|...|++..+.++++.... .=...||..|+.+.++|.++ .|.+.++... +--|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 677777788888877777776654 11245777777777777654 2333333333 33466677766
Q ss_pred HHHhhc
Q 042503 107 LKACLG 112 (477)
Q Consensus 107 ~~~~~~ 112 (477)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 488
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=42.44 E-value=1.1e+02 Score=20.72 Aligned_cols=18 Identities=0% Similarity=0.108 Sum_probs=7.8
Q ss_pred HHHhhcCChhHHHHHhcc
Q 042503 42 SVCGTLNEIKYATKIFNQ 59 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~ 59 (477)
...+..|+.+-+.-+++.
T Consensus 31 ~~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 31 HYAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHHTTTHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 333344444444444443
No 489
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.47 E-value=2.3e+02 Score=24.26 Aligned_cols=73 Identities=8% Similarity=-0.043 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.+..+..++...|++-++++...+. ... -+...|..-..+....-+.++|..-+.++++++|.-..+...=++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr 306 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELR 306 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 3445566777788888888888887 333 455677777777778889999999999999999864444443333
No 490
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.37 E-value=65 Score=17.98 Aligned_cols=28 Identities=25% Similarity=0.153 Sum_probs=19.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+|..|+.+-...+++++|..=+++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777777777777777776666543
No 491
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.21 E-value=3e+02 Score=25.60 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 042503 195 RSVVSWNLMISSLGK---SGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA 247 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 247 (477)
++-..+..+++++.+ -.+++.|+-++.+|.+.|-.|-...-..++-++-..|.
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 444556667777754 46789999999999999876766555555555555553
No 492
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.90 E-value=2.7e+02 Score=25.03 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc---cccHHHHHHHHH
Q 042503 285 DTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH---AGLVEKARELFA 358 (477)
Q Consensus 285 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 358 (477)
+.-+.+++++.+. +...+..++..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445566665543 33456666777777778888888888888874 4466777777665443 335677777776
Q ss_pred Hhhhc-----cCC----CCChH-------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 359 SMTGL-----HSI----VPNLE-------HYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 359 ~~~~~-----~~~----~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.... .+. .+... .+..+...+..+|..+.|..+++-+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 65431 111 01111 2233334455788888888888876
No 493
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.56 E-value=1.9e+02 Score=25.78 Aligned_cols=111 Identities=10% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-
Q 042503 356 LFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE- 432 (477)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 432 (477)
+++-+.++..+..|...++.|...-- +...++++++-.++- |-.--...+......|++-||-+.|.+.+++..+..
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktv 135 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTV 135 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q ss_pred -----CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 433 -----PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 433 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
-+-.-+...++-.|....-..+-++-.+.+++.|
T Consensus 136 s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 136 SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.27 E-value=2.3e+02 Score=23.93 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHHhhccccHHHHHHHHHHh
Q 042503 340 VLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~ 360 (477)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 333444445555555544443
No 495
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.19 E-value=2.3e+02 Score=27.42 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCC-HH---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 375 CMVDVLGRSGCVREAYDLIRSMSIRPN-AA---IWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.++.-|.+.+++++|+.++..|...-. .. ..+.+.+.+.+..-..+.+..++.++.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 466677777777777777777733221 12 333444444555445555556666654
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.01 E-value=1.1e+02 Score=26.77 Aligned_cols=131 Identities=9% Similarity=0.015 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAA 403 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~ 403 (477)
+.|...++.++.- +....++--+-+++..+..|-.-....+..+..-|++.++.+.+.+++.+. +.+-|..
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 4444455555431 111222222333444434444445677888999999999999998887765 4454442
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-Cc-hHHHH-HHHHHhcCCchHHHHHHHHHH
Q 042503 404 -IWGSLLSSCRTHGHVELAEHAVKELINLEPWN-SG-NYVLL-SNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 404 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~-~~~~l-~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+--.|.-.|....-.++.++..+.+++.+.+- .. -|-.+ +-.+....++.+|-.++-...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 22233334444445666677777777777431 11 12222 222334567777777766554
No 497
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.42 E-value=1.6e+02 Score=22.00 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
+....+|..+...++-......|......+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345677888887777566666777778888888888888888753
No 498
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=39.07 E-value=12 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.5
Q ss_pred CCCccCCCCccCC
Q 042503 465 NNVKKSPGQSLIE 477 (477)
Q Consensus 465 ~~~~~~~~~s~~~ 477 (477)
.|+..+|..||+|
T Consensus 9 d~~~~dp~vswle 21 (43)
T PF08195_consen 9 DSYDMDPDVSWLE 21 (43)
T ss_pred ccccCCCCccHHH
Confidence 4677889999986
No 499
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.64 E-value=1.7e+02 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
+..+...+++-.|.++++.+.+.+..++..|....+..+...|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444445555555555444444444433333333333
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.70 E-value=61 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhH
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKY 52 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 52 (477)
.++..+...+..-.|.++++.+.+.+...+..+.-..++.+...|-+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 3566666666678888899998888877777777777777777775443
Done!