Query 042503
Match_columns 477
No_of_seqs 621 out of 2263
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 11:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8E-43 2.8E-47 340.2 32.2 456 2-466 87-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.8E-40 1.6E-44 320.6 34.8 439 2-447 120-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.6E-31 2.3E-35 241.8 37.0 372 72-451 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-29 4.2E-34 233.3 36.1 353 106-465 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.4E-29 2.2E-33 232.0 20.2 212 82-347 7-223 (501)
6 2gw1_A Mitochondrial precursor 100.0 6E-27 2.1E-31 223.8 30.8 432 3-442 10-489 (514)
7 2gw1_A Mitochondrial precursor 100.0 8.6E-27 2.9E-31 222.8 29.4 425 34-466 6-479 (514)
8 4g26_A Pentatricopeptide repea 100.0 7.7E-28 2.6E-32 224.7 21.2 184 198-414 27-222 (501)
9 3fp2_A TPR repeat-containing p 100.0 6.1E-26 2.1E-30 218.1 28.2 419 33-465 24-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.9E-25 1.7E-29 206.9 29.7 334 98-461 24-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-24 4.4E-29 208.9 32.2 428 2-440 28-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 3.4E-24 1.2E-28 201.2 31.4 379 51-456 9-445 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 177.8 30.3 304 135-445 3-349 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.8E-22 2E-26 180.0 28.1 296 165-466 2-336 (359)
15 3hym_B Cell division cycle pro 99.9 1.2E-20 4E-25 169.3 25.7 279 171-453 27-322 (330)
16 1fch_A Peroxisomal targeting s 99.9 5.8E-21 2E-25 174.1 22.2 278 179-462 38-356 (368)
17 3hym_B Cell division cycle pro 99.9 2.9E-20 9.8E-25 166.7 26.2 266 195-466 20-300 (330)
18 2xm6_A Protein corresponding t 99.9 1.4E-19 4.8E-24 171.2 32.1 365 64-448 38-452 (490)
19 2ooe_A Cleavage stimulation fa 99.9 1.4E-18 4.7E-23 166.2 37.9 417 22-466 2-493 (530)
20 4g1t_A Interferon-induced prot 99.9 7.7E-20 2.6E-24 172.6 26.4 371 64-476 50-470 (472)
21 2xm6_A Protein corresponding t 99.9 2.4E-18 8.3E-23 162.8 35.9 364 82-467 24-434 (490)
22 1b89_A Protein (clathrin heavy 99.9 2.9E-20 9.8E-25 165.6 19.7 280 46-356 15-304 (449)
23 4eqf_A PEX5-related protein; a 99.9 3.5E-20 1.2E-24 168.7 20.5 259 197-461 65-352 (365)
24 1xi4_A Clathrin heavy chain; a 99.9 1.4E-17 4.6E-22 165.5 38.7 379 33-458 984-1377(1630)
25 1xi4_A Clathrin heavy chain; a 99.8 4.3E-17 1.5E-21 161.9 38.3 411 4-460 990-1440(1630)
26 1b89_A Protein (clathrin heavy 99.8 7.3E-19 2.5E-23 156.6 23.2 346 10-397 14-370 (449)
27 3cv0_A Peroxisome targeting si 99.8 2.1E-19 7.3E-24 160.8 20.2 260 199-464 23-314 (327)
28 3mkr_A Coatomer subunit epsilo 99.8 5.4E-18 1.8E-22 148.0 28.1 267 178-458 11-287 (291)
29 1fch_A Peroxisomal targeting s 99.8 1.3E-19 4.6E-24 165.0 18.0 276 148-430 38-358 (368)
30 4eqf_A PEX5-related protein; a 99.8 8.9E-19 3E-23 159.4 19.4 233 231-466 64-311 (365)
31 2ooe_A Cleavage stimulation fa 99.8 7.5E-17 2.6E-21 154.1 33.5 407 3-434 17-495 (530)
32 3mkr_A Coatomer subunit epsilo 99.8 2.7E-18 9.1E-23 150.0 19.8 247 204-466 6-265 (291)
33 4g1t_A Interferon-induced prot 99.8 2.1E-17 7.2E-22 155.9 26.6 381 32-443 49-471 (472)
34 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.2E-23 154.7 15.3 272 134-432 20-316 (327)
35 2pl2_A Hypothetical conserved 99.8 3.4E-17 1.2E-21 136.7 18.6 196 265-463 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.8 6.9E-17 2.3E-21 139.1 19.1 229 198-465 6-236 (258)
37 3e4b_A ALGK; tetratricopeptide 99.7 6.7E-16 2.3E-20 143.8 24.1 379 5-464 9-420 (452)
38 3uq3_A Heat shock protein STI1 99.7 6.3E-16 2.1E-20 133.0 20.4 190 267-466 4-203 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.1E-16 1.7E-20 135.0 17.6 241 209-459 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.7 8E-16 2.7E-20 133.6 18.7 246 169-450 6-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.6E-20 141.1 21.2 345 105-468 8-390 (452)
42 2h6f_A Protein farnesyltransfe 99.7 3.3E-15 1.1E-19 134.8 21.9 245 199-449 99-366 (382)
43 2q7f_A YRRB protein; TPR, prot 99.7 8.1E-16 2.8E-20 131.1 16.7 208 234-446 25-237 (243)
44 2vq2_A PILW, putative fimbrial 99.7 5E-15 1.7E-19 124.5 21.0 199 265-465 5-211 (225)
45 2ho1_A Type 4 fimbrial biogene 99.7 3.9E-15 1.3E-19 127.6 20.6 197 268-466 37-239 (252)
46 3u4t_A TPR repeat-containing p 99.7 3.8E-15 1.3E-19 129.3 19.9 223 239-466 10-251 (272)
47 3spa_A Mtrpol, DNA-directed RN 99.7 4.1E-17 1.4E-21 157.3 7.1 149 198-384 128-286 (1134)
48 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-17 8E-22 158.9 5.3 129 33-161 126-262 (1134)
49 2ho1_A Type 4 fimbrial biogene 99.7 1.8E-14 6.1E-19 123.5 22.2 198 239-440 44-247 (252)
50 2h6f_A Protein farnesyltransfe 99.7 4E-15 1.4E-19 134.2 18.7 228 233-466 98-349 (382)
51 2q7f_A YRRB protein; TPR, prot 99.7 3E-15 1E-19 127.5 16.5 199 265-466 20-223 (243)
52 2pl2_A Hypothetical conserved 99.7 5.2E-15 1.8E-19 123.4 17.4 204 197-427 5-210 (217)
53 4e6h_A MRNA 3'-END-processing 99.7 3.6E-13 1.2E-17 129.6 32.4 413 16-435 49-574 (679)
54 1ouv_A Conserved hypothetical 99.7 3.7E-14 1.3E-18 123.1 23.4 224 196-466 5-252 (273)
55 4a1s_A PINS, partner of inscut 99.6 1.9E-15 6.4E-20 139.8 15.3 264 170-464 52-371 (411)
56 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-14 6.1E-19 116.9 19.1 166 298-466 4-171 (184)
57 3sf4_A G-protein-signaling mod 99.6 1E-14 3.6E-19 134.4 19.9 291 165-455 8-366 (406)
58 3ro2_A PINS homolog, G-protein 99.6 9.5E-15 3.2E-19 130.9 18.0 262 204-466 12-333 (338)
59 2vq2_A PILW, putative fimbrial 99.6 3.6E-14 1.2E-18 119.2 19.9 206 198-442 9-222 (225)
60 1ouv_A Conserved hypothetical 99.6 1.1E-13 3.8E-18 120.0 23.6 224 165-434 5-254 (273)
61 3sf4_A G-protein-signaling mod 99.6 2.5E-15 8.6E-20 138.6 12.2 287 133-419 7-364 (406)
62 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.7E-14 9.2E-19 124.1 17.7 236 180-425 19-269 (275)
63 4abn_A Tetratricopeptide repea 99.6 7.4E-15 2.5E-19 137.6 13.9 192 265-460 99-316 (474)
64 4a1s_A PINS, partner of inscut 99.6 3.4E-14 1.2E-18 131.3 15.4 271 135-434 48-375 (411)
65 4e6h_A MRNA 3'-END-processing 99.6 4.5E-12 1.5E-16 122.0 30.3 400 63-466 64-571 (679)
66 3ulq_A Response regulator aspa 99.6 7.5E-14 2.6E-18 127.6 16.3 19 111-129 23-41 (383)
67 2ond_A Cleavage stimulation fa 99.6 1.9E-12 6.4E-17 114.3 24.3 219 214-438 33-277 (308)
68 3ulq_A Response regulator aspa 99.6 6.3E-14 2.1E-18 128.1 15.2 196 268-464 143-367 (383)
69 3ro2_A PINS homolog, G-protein 99.5 6.3E-14 2.1E-18 125.5 14.0 265 139-434 9-335 (338)
70 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-13 7.5E-18 110.5 15.9 168 266-436 3-175 (184)
71 3as5_A MAMA; tetratricopeptide 99.5 2.7E-13 9.3E-18 109.9 15.4 131 334-466 42-174 (186)
72 2ond_A Cleavage stimulation fa 99.5 1E-12 3.5E-17 116.0 20.1 212 249-466 33-271 (308)
73 4gyw_A UDP-N-acetylglucosamine 99.5 4.2E-13 1.5E-17 130.7 18.7 163 299-464 9-173 (723)
74 3nf1_A KLC 1, kinesin light ch 99.5 9.2E-14 3.2E-18 123.0 12.6 235 199-464 29-306 (311)
75 3q15_A PSP28, response regulat 99.5 8.6E-13 2.9E-17 120.3 17.5 302 131-464 6-364 (378)
76 3q15_A PSP28, response regulat 99.5 2.4E-12 8.3E-17 117.3 19.4 309 96-431 6-365 (378)
77 1hz4_A MALT regulatory protein 99.5 2.4E-11 8.4E-16 110.5 25.3 262 172-433 20-324 (373)
78 4i17_A Hypothetical protein; T 99.5 1.8E-12 6.2E-17 109.0 16.4 205 230-446 5-224 (228)
79 3as5_A MAMA; tetratricopeptide 99.5 7.6E-12 2.6E-16 101.3 19.5 171 266-439 6-181 (186)
80 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6.3E-17 121.4 17.9 209 213-427 84-317 (474)
81 4i17_A Hypothetical protein; T 99.4 3.5E-12 1.2E-16 107.3 15.8 189 268-466 7-210 (228)
82 3nf1_A KLC 1, kinesin light ch 99.4 1.5E-12 5E-17 115.2 10.9 159 67-225 29-223 (311)
83 3mv2_B Coatomer subunit epsilo 99.4 1.6E-10 5.4E-15 98.8 20.7 58 304-361 105-163 (310)
84 1hz4_A MALT regulatory protein 99.3 2.6E-10 9E-15 103.6 23.3 127 199-325 137-279 (373)
85 3edt_B KLC 2, kinesin light ch 99.3 3.7E-12 1.3E-16 110.9 10.5 221 244-465 13-281 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-11 5E-16 119.9 15.6 165 265-432 6-175 (723)
87 1qqe_A Vesicular transport pro 99.3 7.5E-11 2.6E-15 103.1 15.8 169 268-436 77-274 (292)
88 1qqe_A Vesicular transport pro 99.3 9.4E-11 3.2E-15 102.4 16.1 172 283-465 32-228 (292)
89 3qky_A Outer membrane assembly 99.3 8.9E-11 3E-15 100.9 15.5 188 265-454 12-250 (261)
90 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.4E-10 1.2E-14 94.7 18.2 182 270-468 6-216 (225)
91 2fo7_A Synthetic consensus TPR 99.3 1.9E-10 6.6E-15 87.4 15.1 127 337-465 4-132 (136)
92 3qky_A Outer membrane assembly 99.3 1.1E-10 3.6E-15 100.4 15.1 169 297-466 13-225 (261)
93 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.9E-16 96.2 7.6 141 308-451 6-149 (150)
94 3edt_B KLC 2, kinesin light ch 99.2 1.3E-10 4.3E-15 101.1 14.7 166 266-431 83-281 (283)
95 3rjv_A Putative SEL1 repeat pr 99.2 5.7E-10 2E-14 92.3 17.4 162 298-468 17-200 (212)
96 3qou_A Protein YBBN; thioredox 99.2 3.1E-10 1.1E-14 98.7 16.1 163 298-464 116-283 (287)
97 2pzi_A Probable serine/threoni 99.2 3.9E-11 1.3E-15 117.5 11.5 169 279-451 402-583 (681)
98 2fo7_A Synthetic consensus TPR 99.2 6.8E-10 2.3E-14 84.3 15.9 131 301-434 3-135 (136)
99 3mv2_B Coatomer subunit epsilo 99.2 2.3E-09 7.9E-14 91.7 19.4 180 251-439 85-290 (310)
100 2r5s_A Uncharacterized protein 99.2 4E-10 1.4E-14 90.2 13.6 159 302-464 9-172 (176)
101 2vsy_A XCC0866; transferase, g 99.2 3.7E-10 1.3E-14 108.8 15.2 160 281-443 2-169 (568)
102 4ga2_A E3 SUMO-protein ligase 99.2 1.5E-10 5.1E-15 89.8 9.6 125 340-466 3-130 (150)
103 3urz_A Uncharacterized protein 99.1 2.1E-09 7.3E-14 88.6 15.9 137 303-444 58-198 (208)
104 3urz_A Uncharacterized protein 99.1 6.7E-10 2.3E-14 91.6 12.7 167 235-407 7-195 (208)
105 2uy1_A Cleavage stimulation fa 99.1 4.4E-08 1.5E-12 91.7 26.3 372 11-430 6-412 (493)
106 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.5E-14 106.8 16.3 166 243-414 402-580 (681)
107 2uy1_A Cleavage stimulation fa 99.1 1.4E-08 4.7E-13 95.1 22.1 373 46-464 6-412 (493)
108 3gyz_A Chaperone protein IPGC; 99.1 6.8E-10 2.3E-14 85.6 10.8 98 369-466 35-134 (151)
109 3qou_A Protein YBBN; thioredox 99.1 4.5E-09 1.5E-13 91.4 17.3 164 229-395 114-280 (287)
110 3dra_A Protein farnesyltransfe 99.1 1.9E-08 6.5E-13 87.0 20.8 221 213-440 49-297 (306)
111 2vsy_A XCC0866; transferase, g 99.1 4.4E-09 1.5E-13 101.2 18.5 151 313-466 3-158 (568)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.2E-09 1.4E-13 87.2 16.0 128 302-435 9-154 (213)
113 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.9E-09 1.7E-13 87.6 15.3 188 231-438 3-220 (225)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 2.9E-09 1E-13 93.7 14.4 219 209-457 3-253 (307)
115 4gco_A Protein STI-1; structur 99.0 4E-09 1.4E-13 78.8 12.9 108 336-445 15-124 (126)
116 2r5s_A Uncharacterized protein 99.0 3.9E-09 1.3E-13 84.4 13.7 75 353-429 93-171 (176)
117 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.5E-12 80.4 24.7 212 248-464 49-286 (306)
118 4gco_A Protein STI-1; structur 99.0 3.7E-09 1.3E-13 79.0 11.8 97 370-466 13-111 (126)
119 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.6E-14 83.6 9.6 94 371-464 22-117 (148)
120 1a17_A Serine/threonine protei 99.0 1.2E-08 4.1E-13 80.6 14.3 128 335-464 14-145 (166)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.2E-08 1.1E-12 81.8 16.4 132 270-402 8-154 (213)
122 3rjv_A Putative SEL1 repeat pr 98.9 4.5E-08 1.5E-12 80.8 16.8 175 250-433 4-199 (212)
123 2lni_A Stress-induced-phosphop 98.9 1.7E-08 5.8E-13 76.2 13.0 118 332-451 14-133 (133)
124 1na0_A Designed protein CTPR3; 98.9 2.3E-08 8E-13 74.4 13.5 115 334-450 9-125 (125)
125 2vyi_A SGTA protein; chaperone 98.9 1.4E-08 4.7E-13 76.4 12.3 118 333-452 11-130 (131)
126 3u3w_A Transcriptional activat 98.9 4.6E-08 1.6E-12 85.4 17.2 160 305-464 81-265 (293)
127 2e2e_A Formate-dependent nitri 98.9 6E-09 2.1E-13 83.4 10.5 128 309-439 20-152 (177)
128 2qfc_A PLCR protein; TPR, HTH, 98.9 5.9E-08 2E-12 84.7 17.6 162 303-464 79-265 (293)
129 2xcb_A PCRH, regulatory protei 98.9 1.1E-08 3.6E-13 78.5 10.9 94 372-465 20-115 (142)
130 2qfc_A PLCR protein; TPR, HTH, 98.9 6.3E-08 2.1E-12 84.5 17.0 167 265-431 72-266 (293)
131 2c2l_A CHIP, carboxy terminus 98.9 1.9E-09 6.4E-14 93.4 7.2 191 269-465 5-199 (281)
132 2kck_A TPR repeat; tetratricop 98.9 1.5E-08 5.3E-13 73.8 11.0 100 368-467 4-108 (112)
133 3upv_A Heat shock protein STI1 98.9 1.6E-08 5.5E-13 75.7 11.2 93 372-464 6-100 (126)
134 2ifu_A Gamma-SNAP; membrane fu 98.9 8.3E-09 2.8E-13 90.8 10.9 195 245-463 4-222 (307)
135 1p5q_A FKBP52, FK506-binding p 98.9 2.5E-08 8.6E-13 88.7 13.9 130 334-463 147-292 (336)
136 2vgx_A Chaperone SYCD; alterna 98.9 6.1E-09 2.1E-13 80.4 8.6 117 321-440 9-127 (148)
137 2e2e_A Formate-dependent nitri 98.9 5.8E-08 2E-12 77.6 13.9 122 344-467 20-146 (177)
138 1hxi_A PEX5, peroxisome target 98.8 1.7E-08 5.9E-13 74.7 9.6 95 372-466 19-115 (121)
139 2fbn_A 70 kDa peptidylprolyl i 98.8 3.1E-09 1.1E-13 86.8 6.1 131 336-466 40-187 (198)
140 4f3v_A ESX-1 secretion system 98.8 2.2E-08 7.4E-13 84.6 11.1 193 244-443 18-248 (282)
141 3gyz_A Chaperone protein IPGC; 98.8 1.1E-07 3.9E-12 73.1 14.0 102 333-436 35-138 (151)
142 3u3w_A Transcriptional activat 98.8 2E-07 6.9E-12 81.3 17.3 160 272-431 79-266 (293)
143 3q49_B STIP1 homology and U bo 98.8 6.3E-08 2.1E-12 73.6 12.4 95 370-464 9-105 (137)
144 3gw4_A Uncharacterized protein 98.8 6.1E-08 2.1E-12 79.4 12.8 152 312-464 5-175 (203)
145 3sz7_A HSC70 cochaperone (SGT) 98.8 4.3E-08 1.5E-12 77.2 11.2 112 332-445 9-122 (164)
146 2xcb_A PCRH, regulatory protei 98.8 2E-08 6.9E-13 77.0 8.5 110 333-444 17-128 (142)
147 4f3v_A ESX-1 secretion system 98.8 1.6E-07 5.3E-12 79.4 14.4 135 137-274 104-247 (282)
148 1elw_A TPR1-domain of HOP; HOP 98.8 1.9E-07 6.4E-12 68.6 13.5 109 335-445 5-115 (118)
149 1elw_A TPR1-domain of HOP; HOP 98.8 1E-07 3.5E-12 70.0 12.1 98 369-466 3-102 (118)
150 3upv_A Heat shock protein STI1 98.8 9.6E-08 3.3E-12 71.4 11.9 112 334-447 4-123 (126)
151 3sz7_A HSC70 cochaperone (SGT) 98.8 3.4E-07 1.1E-11 72.0 15.4 93 372-464 13-107 (164)
152 3q7a_A Farnesyltransferase alp 98.8 5.5E-06 1.9E-10 72.5 24.2 224 210-440 67-341 (349)
153 4gcn_A Protein STI-1; structur 98.8 4.9E-08 1.7E-12 73.0 10.0 93 372-464 10-111 (127)
154 2lni_A Stress-induced-phosphop 98.8 9.3E-08 3.2E-12 72.1 11.4 100 367-466 13-114 (133)
155 2dba_A Smooth muscle cell asso 98.7 1.5E-07 5.1E-12 72.5 12.6 111 333-446 27-143 (148)
156 1na0_A Designed protein CTPR3; 98.7 1.5E-07 5E-12 70.0 11.9 97 370-466 9-107 (125)
157 3gw4_A Uncharacterized protein 98.7 7.2E-08 2.5E-12 78.9 10.8 154 279-432 3-177 (203)
158 3q7a_A Farnesyltransferase alp 98.7 1.1E-06 3.9E-11 76.7 18.5 215 246-465 68-331 (349)
159 2c2l_A CHIP, carboxy terminus 98.7 6E-08 2E-12 83.9 9.6 187 235-431 7-199 (281)
160 1a17_A Serine/threonine protei 98.7 6E-07 2E-11 70.6 14.7 127 301-430 15-145 (166)
161 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.5E-12 70.4 10.5 99 368-466 10-110 (131)
162 2hr2_A Hypothetical protein; a 98.7 1.3E-07 4.3E-12 72.0 9.6 62 404-465 59-131 (159)
163 2dba_A Smooth muscle cell asso 98.7 6.1E-07 2.1E-11 68.9 13.5 100 367-466 25-129 (148)
164 2xev_A YBGF; tetratricopeptide 98.6 1.2E-07 4.1E-12 71.1 9.0 100 339-440 7-114 (129)
165 3q49_B STIP1 homology and U bo 98.6 3.1E-07 1.1E-11 69.7 11.4 113 331-445 6-125 (137)
166 1p5q_A FKBP52, FK506-binding p 98.6 5.8E-08 2E-12 86.4 8.1 162 245-429 126-292 (336)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.2E-07 1.1E-11 85.3 13.2 129 335-463 269-413 (457)
168 3dss_A Geranylgeranyl transfer 98.6 9.1E-06 3.1E-10 70.7 20.4 192 248-445 90-318 (331)
169 3k9i_A BH0479 protein; putativ 98.6 6.3E-08 2.1E-12 71.3 5.6 91 347-438 3-97 (117)
170 3dss_A Geranylgeranyl transfer 98.6 9.7E-06 3.3E-10 70.6 20.1 180 284-466 90-305 (331)
171 1elr_A TPR2A-domain of HOP; HO 98.6 3.3E-07 1.1E-11 68.7 9.7 95 371-465 5-108 (131)
172 2kck_A TPR repeat; tetratricop 98.6 6.9E-07 2.3E-11 64.8 11.0 102 333-436 5-111 (112)
173 3rkv_A Putative peptidylprolyl 98.6 3.2E-07 1.1E-11 72.0 9.7 112 334-445 11-141 (162)
174 4b4t_Q 26S proteasome regulato 98.6 1.3E-06 4.4E-11 80.9 15.4 190 275-464 11-244 (434)
175 1elr_A TPR2A-domain of HOP; HO 98.6 7.9E-07 2.7E-11 66.6 11.5 111 335-448 5-124 (131)
176 1wao_1 Serine/threonine protei 98.6 2.8E-07 9.6E-12 86.0 10.8 119 340-460 12-134 (477)
177 4gcn_A Protein STI-1; structur 98.6 8.7E-07 3E-11 66.1 11.2 95 337-433 11-114 (127)
178 2xev_A YBGF; tetratricopeptide 98.5 1.7E-06 5.7E-11 64.7 12.6 92 374-465 6-105 (129)
179 1hxi_A PEX5, peroxisome target 98.5 8.3E-07 2.8E-11 65.5 10.2 97 338-436 21-119 (121)
180 2if4_A ATFKBP42; FKBP-like, al 98.5 2.9E-07 1E-11 81.9 8.9 149 300-468 180-331 (338)
181 3ro3_A PINS homolog, G-protein 98.5 9.1E-07 3.1E-11 69.1 10.7 130 336-465 11-158 (164)
182 1ihg_A Cyclophilin 40; ppiase 98.5 9.4E-07 3.2E-11 79.5 11.8 90 369-458 272-363 (370)
183 2fbn_A 70 kDa peptidylprolyl i 98.5 2.8E-07 9.6E-12 75.1 7.3 126 301-429 40-184 (198)
184 3rkv_A Putative peptidylprolyl 98.5 8.5E-07 2.9E-11 69.5 9.4 63 403-465 64-126 (162)
185 3k9i_A BH0479 protein; putativ 98.5 2.7E-07 9.2E-12 67.8 6.1 83 383-465 3-90 (117)
186 2l6j_A TPR repeat-containing p 98.4 1.4E-07 4.8E-12 68.6 3.7 93 369-461 3-103 (111)
187 2hr2_A Hypothetical protein; a 98.4 2.4E-06 8.2E-11 65.0 9.7 109 337-445 14-145 (159)
188 3ro3_A PINS homolog, G-protein 98.3 2E-06 6.7E-11 67.1 8.9 132 301-432 11-159 (164)
189 3n71_A Histone lysine methyltr 98.3 2.9E-06 9.8E-11 78.7 11.0 124 343-466 318-465 (490)
190 3ma5_A Tetratricopeptide repea 98.3 3.3E-06 1.1E-10 59.8 9.0 64 401-464 6-69 (100)
191 1na3_A Designed protein CTPR2; 98.3 3.9E-06 1.3E-10 58.1 8.9 82 369-450 8-91 (91)
192 1dce_A Protein (RAB geranylger 98.3 2.5E-05 8.5E-10 74.3 17.0 167 285-454 46-244 (567)
193 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4E-10 74.5 14.6 160 306-465 11-204 (434)
194 2kat_A Uncharacterized protein 98.3 3E-06 1E-10 61.8 8.3 80 353-434 4-85 (115)
195 3bee_A Putative YFRE protein; 98.3 6.3E-06 2.1E-10 57.0 9.2 73 399-472 3-78 (93)
196 1wao_1 Serine/threonine protei 98.3 6.4E-06 2.2E-10 76.9 12.2 116 308-426 15-134 (477)
197 2if4_A ATFKBP42; FKBP-like, al 98.3 1.7E-06 5.9E-11 76.9 7.8 117 333-466 178-294 (338)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.6E-06 5.6E-11 80.5 7.7 155 245-422 247-405 (457)
199 1ihg_A Cyclophilin 40; ppiase 98.2 7.8E-06 2.7E-10 73.5 9.7 114 334-466 223-337 (370)
200 1zu2_A Mitochondrial import re 98.2 1.9E-06 6.5E-11 65.4 4.7 47 419-465 63-120 (158)
201 1klx_A Cysteine rich protein B 98.1 3E-05 1E-09 58.5 11.5 112 348-467 9-128 (138)
202 3lvg_A Clathrin heavy chain 1; 98.1 4.4E-07 1.5E-11 80.6 1.2 260 34-319 54-324 (624)
203 2l6j_A TPR repeat-containing p 98.1 1.7E-05 5.6E-10 57.2 8.0 67 400-466 2-68 (111)
204 1dce_A Protein (RAB geranylger 98.0 0.00011 3.9E-09 69.8 15.4 151 313-466 43-222 (567)
205 1zu2_A Mitochondrial import re 98.0 7.8E-06 2.7E-10 62.1 5.5 88 347-436 15-125 (158)
206 1klx_A Cysteine rich protein B 98.0 0.00022 7.6E-09 53.7 13.1 112 313-433 9-128 (138)
207 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 71.4 10.1 124 308-431 318-464 (490)
208 2kat_A Uncharacterized protein 97.9 6.3E-05 2.2E-09 54.6 9.2 63 402-464 19-81 (115)
209 1na3_A Designed protein CTPR2; 97.9 4.5E-05 1.5E-09 52.5 7.7 65 402-466 9-73 (91)
210 2kc7_A BFR218_protein; tetratr 97.9 2E-05 6.7E-10 55.6 5.5 80 376-463 6-88 (99)
211 3ly7_A Transcriptional activat 97.8 0.0011 3.9E-08 57.9 15.5 138 297-435 192-343 (372)
212 3qww_A SET and MYND domain-con 97.7 0.00014 4.8E-09 66.3 9.4 82 383-464 311-410 (433)
213 3ma5_A Tetratricopeptide repea 97.7 0.00016 5.5E-09 50.9 7.3 67 367-433 4-72 (100)
214 2kc7_A BFR218_protein; tetratr 97.6 0.00014 4.6E-09 51.1 6.8 60 407-466 5-65 (99)
215 3qww_A SET and MYND domain-con 97.6 0.00031 1E-08 64.1 9.8 94 346-439 310-424 (433)
216 3u64_A Protein TP_0956; tetrat 97.6 0.00038 1.3E-08 58.2 9.3 88 386-473 179-277 (301)
217 1qsa_A Protein (soluble lytic 97.6 0.031 1.1E-06 53.3 23.5 113 314-430 229-347 (618)
218 3qwp_A SET and MYND domain-con 97.6 0.00037 1.3E-08 63.7 10.1 85 380-464 297-399 (429)
219 3qwp_A SET and MYND domain-con 97.5 0.0012 4.2E-08 60.2 13.1 101 341-441 294-415 (429)
220 1pc2_A Mitochondria fission pr 97.4 0.00044 1.5E-08 51.9 7.2 93 346-440 10-109 (152)
221 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0014 4.9E-08 46.3 9.6 75 369-443 4-87 (104)
222 1wy6_A Hypothetical protein ST 97.3 0.024 8.1E-07 40.9 15.2 141 309-468 17-157 (172)
223 3bee_A Putative YFRE protein; 97.2 0.0065 2.2E-07 41.7 10.3 69 367-435 3-76 (93)
224 3ly7_A Transcriptional activat 97.2 0.0057 2E-07 53.5 12.3 133 330-466 190-340 (372)
225 1pc2_A Mitochondria fission pr 97.1 0.0023 7.9E-08 48.0 8.0 65 400-464 30-99 (152)
226 3lvg_A Clathrin heavy chain 1; 97.0 0.00035 1.2E-08 62.5 3.1 335 2-356 86-534 (624)
227 3mkq_A Coatomer beta'-subunit; 96.9 0.024 8.1E-07 56.9 16.2 101 278-396 662-762 (814)
228 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0059 2E-07 43.0 7.9 66 400-465 3-75 (104)
229 4h7y_A Dual specificity protei 96.7 0.016 5.4E-07 42.8 9.1 111 331-444 10-136 (161)
230 1nzn_A CGI-135 protein, fissio 96.5 0.0075 2.6E-07 43.4 6.6 99 340-440 7-112 (126)
231 3mkq_A Coatomer beta'-subunit; 96.5 0.025 8.4E-07 56.8 13.1 76 272-361 633-708 (814)
232 1nzn_A CGI-135 protein, fissio 96.3 0.057 1.9E-06 38.9 10.3 65 400-464 33-102 (126)
233 1wy6_A Hypothetical protein ST 96.3 0.17 5.7E-06 36.6 12.1 138 111-263 18-156 (172)
234 3u64_A Protein TP_0956; tetrat 96.2 0.0066 2.3E-07 50.9 5.7 83 349-434 178-272 (301)
235 4gns_B Protein CSD3, chitin bi 96.1 0.056 1.9E-06 52.5 12.2 58 406-463 341-398 (754)
236 3mkq_B Coatomer subunit alpha; 96.1 0.15 5E-06 39.3 12.0 105 40-161 11-115 (177)
237 4h7y_A Dual specificity protei 96.1 0.071 2.4E-06 39.5 9.6 97 297-396 11-120 (161)
238 3mkq_B Coatomer subunit alpha; 95.7 0.49 1.7E-05 36.4 15.3 45 278-324 15-59 (177)
239 1y8m_A FIS1; mitochondria, unk 95.7 0.12 4.1E-06 37.9 9.6 71 367-437 36-112 (144)
240 4ady_A RPN2, 26S proteasome re 95.6 2 6.9E-05 42.8 28.8 253 175-430 383-657 (963)
241 4ady_A RPN2, 26S proteasome re 95.6 2.1 7.2E-05 42.7 25.5 265 144-414 383-673 (963)
242 3o48_A Mitochondria fission 1 95.3 0.071 2.4E-06 38.6 7.2 33 404-436 80-112 (134)
243 2ff4_A Probable regulatory pro 95.3 0.042 1.4E-06 49.4 7.6 68 405-472 174-246 (388)
244 3ffl_A Anaphase-promoting comp 94.7 0.17 5.8E-06 38.3 7.9 26 437-462 123-148 (167)
245 1qsa_A Protein (soluble lytic 94.7 3.2 0.00011 39.7 30.7 376 38-456 76-470 (618)
246 4b4t_P 26S proteasome regulato 94.3 3.1 0.0001 38.0 23.8 160 139-299 141-326 (445)
247 1y8m_A FIS1; mitochondria, unk 93.5 0.96 3.3E-05 33.2 9.6 69 397-465 34-106 (144)
248 3txn_A 26S proteasome regulato 93.2 3 0.0001 37.2 14.5 157 272-429 23-208 (394)
249 4b4t_P 26S proteasome regulato 93.1 3 0.0001 38.1 15.0 183 281-464 29-246 (445)
250 3lpz_A GET4 (YOR164C homolog); 93.0 4 0.00014 35.2 23.3 169 269-464 36-215 (336)
251 3o48_A Mitochondria fission 1 92.9 0.62 2.1E-05 33.7 7.8 69 397-465 35-107 (134)
252 2wpv_A GET4, UPF0363 protein Y 92.3 4.9 0.00017 34.4 17.7 168 35-224 34-215 (312)
253 3ltj_A Alpharep-4; protein eng 91.2 4.6 0.00016 31.9 18.1 89 136-225 91-179 (201)
254 3ffl_A Anaphase-promoting comp 91.2 3.9 0.00013 31.0 11.1 61 68-128 23-91 (167)
255 3ltm_A Alpha-REP4; protein eng 91.1 4.9 0.00017 32.0 17.6 88 137-225 97-184 (211)
256 1zbp_A Hypothetical protein VP 91.0 0.47 1.6E-05 39.2 6.1 49 414-462 9-57 (273)
257 3lpz_A GET4 (YOR164C homolog); 90.9 7.2 0.00025 33.6 19.7 191 13-225 10-215 (336)
258 4fhn_B Nucleoporin NUP120; pro 90.8 15 0.00053 38.2 18.7 121 139-260 816-966 (1139)
259 2uwj_G Type III export protein 90.6 2.8 9.5E-05 28.3 8.6 89 11-104 18-106 (115)
260 4gns_B Protein CSD3, chitin bi 90.6 0.77 2.6E-05 44.7 8.2 121 71-193 254-398 (754)
261 2p58_C Putative type III secre 90.3 3 0.0001 28.2 8.4 88 11-103 19-106 (116)
262 4fhn_B Nucleoporin NUP120; pro 90.0 2.3 8E-05 44.3 11.9 92 374-465 846-967 (1139)
263 2ff4_A Probable regulatory pro 89.9 1.5 5E-05 39.3 9.1 55 340-396 177-231 (388)
264 3txn_A 26S proteasome regulato 89.7 11 0.00036 33.7 22.5 123 137-259 21-166 (394)
265 1v54_E Cytochrome C oxidase po 89.3 1.8 6.1E-05 29.4 6.7 60 317-378 28-87 (109)
266 3ltm_A Alpha-REP4; protein eng 89.2 7.1 0.00024 31.0 19.3 105 139-247 68-172 (211)
267 3esl_A Checkpoint serine/threo 89.1 4.5 0.00015 31.8 9.9 47 386-432 95-145 (202)
268 2wpv_A GET4, UPF0363 protein Y 88.6 11 0.00037 32.3 22.8 182 255-464 20-216 (312)
269 1zbp_A Hypothetical protein VP 88.4 6.3 0.00022 32.6 10.8 120 308-438 6-136 (273)
270 4b4t_R RPN7, 26S proteasome re 87.0 9.8 0.00034 34.5 12.6 96 301-396 133-234 (429)
271 3ltj_A Alpharep-4; protein eng 86.7 10 0.00034 29.8 18.4 71 142-212 35-105 (201)
272 1v54_E Cytochrome C oxidase po 85.3 6.9 0.00023 26.7 9.8 60 385-444 25-87 (109)
273 4a1g_A Mitotic checkpoint seri 84.4 9.1 0.00031 28.5 8.9 49 421-469 84-134 (152)
274 4b4t_R RPN7, 26S proteasome re 84.0 3.3 0.00011 37.7 8.0 61 336-396 133-194 (429)
275 2y69_E Cytochrome C oxidase su 83.5 3.4 0.00012 29.8 6.0 60 317-378 71-130 (152)
276 2uwj_G Type III export protein 83.4 8.3 0.00028 26.1 9.5 30 143-172 47-76 (115)
277 2p58_C Putative type III secre 82.9 8.9 0.0003 26.0 10.4 29 144-172 49-77 (116)
278 2wvi_A Mitotic checkpoint seri 82.1 13 0.00043 28.2 9.1 31 402-432 96-126 (164)
279 2y69_E Cytochrome C oxidase su 79.1 16 0.00054 26.5 9.8 48 397-444 83-130 (152)
280 3kea_A K1L; tropism, ANK repea 71.7 31 0.001 28.9 10.0 183 39-234 33-225 (285)
281 3esl_A Checkpoint serine/threo 69.2 29 0.00099 27.3 8.2 49 248-296 95-143 (202)
282 1wdy_A 2-5A-dependent ribonucl 68.6 48 0.0017 27.3 11.8 22 210-231 192-213 (285)
283 1oyz_A Hypothetical protein YI 67.9 52 0.0018 27.3 22.2 49 32-80 35-83 (280)
284 3eiq_C Programmed cell death p 67.1 37 0.0013 29.7 9.4 71 169-239 220-295 (358)
285 4b4t_S RPN3, 26S proteasome re 66.0 29 0.00098 32.1 8.7 63 334-396 231-296 (523)
286 4a1g_A Mitotic checkpoint seri 65.1 40 0.0014 25.1 8.4 42 251-292 84-125 (152)
287 4gq2_M Nucleoporin NUP120; bet 64.4 85 0.0029 32.0 12.9 105 340-450 816-950 (950)
288 3eu9_A Huntingtin-interacting 64.1 53 0.0018 26.1 10.9 22 40-61 45-66 (240)
289 4aez_C MAD3, mitotic spindle c 62.5 34 0.0012 27.4 7.6 32 401-432 149-180 (223)
290 2d2s_A Exocyst complex compone 61.4 30 0.001 28.2 7.3 26 436-461 91-116 (235)
291 2nsz_A Programmed cell death p 61.4 43 0.0015 24.1 8.5 64 170-233 11-79 (129)
292 2ion_A PDCD4, programmed cell 60.7 36 0.0012 25.4 7.1 63 170-232 13-80 (152)
293 3bu8_A Telomeric repeat-bindin 57.4 43 0.0015 26.5 7.0 27 377-403 121-148 (235)
294 3bqo_A Telomeric repeat-bindin 57.1 42 0.0014 26.1 6.9 35 410-444 125-159 (211)
295 4b4t_S RPN3, 26S proteasome re 55.8 1.3E+02 0.0043 28.0 11.0 61 66-129 232-299 (523)
296 2d2s_A Exocyst complex compone 55.4 27 0.00094 28.4 6.2 21 72-92 25-45 (235)
297 3eu9_A Huntingtin-interacting 55.1 61 0.0021 25.7 8.6 110 42-160 14-131 (240)
298 1oyz_A Hypothetical protein YI 53.5 95 0.0032 25.6 22.7 62 368-433 204-265 (280)
299 1ya0_A SMG-7 transcript varian 53.0 61 0.0021 30.0 8.7 66 382-447 164-231 (497)
300 2zu6_B Programmed cell death p 52.0 1.1E+02 0.0038 26.0 10.9 66 169-234 169-239 (307)
301 2wvi_A Mitotic checkpoint seri 51.1 77 0.0026 23.9 8.3 56 82-137 77-133 (164)
302 1k1a_A B-cell lymphoma 3-encod 50.8 92 0.0032 24.7 9.9 55 6-60 13-69 (241)
303 1bd8_A P19INK4D CDK4/6 inhibit 49.3 53 0.0018 24.0 6.8 67 122-190 83-154 (156)
304 2qx5_A Nucleoporin NIC96; mRNA 49.3 1.9E+02 0.0065 27.9 20.0 80 141-223 300-382 (661)
305 1bpo_A Protein (clathrin); cla 48.5 70 0.0024 29.0 7.9 68 28-95 355-425 (494)
306 1bpo_A Protein (clathrin); cla 47.2 1.7E+02 0.0057 26.7 11.3 123 265-397 358-483 (494)
307 4aez_C MAD3, mitotic spindle c 47.0 1.1E+02 0.0038 24.5 8.6 56 81-136 130-186 (223)
308 2nsz_A Programmed cell death p 46.8 57 0.0019 23.4 6.1 64 272-335 11-79 (129)
309 3mv2_A Coatomer subunit alpha; 46.4 1.4E+02 0.0048 25.5 12.0 41 394-434 197-239 (325)
310 4gq2_M Nucleoporin NUP120; bet 46.0 2.4E+02 0.0081 28.8 12.5 128 141-282 816-950 (950)
311 3jxi_A Vanilloid receptor-rela 46.0 58 0.002 26.5 7.1 25 75-99 12-36 (260)
312 3ctd_A Putative ATPase, AAA fa 45.4 97 0.0033 24.5 7.4 50 198-247 33-85 (213)
313 3b7b_A Euchromatic histone-lys 44.4 1E+02 0.0035 24.4 8.3 51 6-60 15-67 (237)
314 3mwm_A ZUR, putative metal upt 41.5 51 0.0017 24.0 5.3 48 4-51 18-65 (139)
315 2fe3_A Peroxide operon regulat 41.2 1E+02 0.0034 22.6 6.9 17 246-262 35-51 (145)
316 3hra_A Ankyrin repeat family p 40.4 73 0.0025 24.4 6.6 52 43-99 11-66 (201)
317 2fu4_A Ferric uptake regulatio 39.7 72 0.0025 20.3 6.1 60 90-150 7-67 (83)
318 2o03_A Probable zinc uptake re 39.0 52 0.0018 23.6 5.0 47 4-50 15-61 (131)
319 1wgl_A TOLL-interacting protei 38.6 27 0.00092 21.0 2.7 25 448-472 35-59 (59)
320 2ion_A PDCD4, programmed cell 37.9 51 0.0017 24.6 4.8 64 272-335 13-81 (152)
321 1mzb_A Ferric uptake regulatio 37.6 65 0.0022 23.3 5.3 34 15-48 34-67 (136)
322 3bge_A Predicted ATPase; struc 37.3 1.5E+02 0.0051 23.2 8.4 47 202-248 9-58 (201)
323 2cfu_A SDSA1; SDS-hydrolase, l 37.0 75 0.0026 30.7 7.0 65 387-454 437-501 (658)
324 3ljn_A Hypothetical protein; a 35.5 1.6E+02 0.0054 25.4 8.6 90 39-133 22-114 (364)
325 3jxi_A Vanilloid receptor-rela 34.8 1E+02 0.0034 25.0 6.8 55 5-59 8-71 (260)
326 4ets_A Ferric uptake regulatio 34.8 1.2E+02 0.0041 22.8 6.5 59 223-283 24-84 (162)
327 3aji_A 26S proteasome non-ATPa 34.6 1.7E+02 0.0057 23.0 11.3 17 43-59 12-28 (231)
328 2b7e_A PRE-mRNA processing pro 34.5 40 0.0014 20.2 2.9 33 81-113 2-35 (59)
329 2xig_A Ferric uptake regulatio 34.4 66 0.0023 23.8 5.0 61 21-82 14-78 (150)
330 4ets_A Ferric uptake regulatio 34.1 83 0.0028 23.7 5.5 67 16-83 14-87 (162)
331 3mkr_B Coatomer subunit alpha; 33.6 2.3E+02 0.0077 24.3 8.7 41 394-434 188-230 (320)
332 3kea_A K1L; tropism, ANK repea 33.6 2E+02 0.007 23.7 9.2 19 275-293 66-84 (285)
333 4g8k_A 2-5A-dependent ribonucl 33.2 2.1E+02 0.0073 24.2 9.0 57 38-99 26-86 (337)
334 2xig_A Ferric uptake regulatio 33.2 1.5E+02 0.005 21.9 7.3 18 245-262 39-56 (150)
335 3ygs_P Procaspase 9; apoptosis 32.9 71 0.0024 21.5 4.5 36 181-216 52-87 (97)
336 3hra_A Ankyrin repeat family p 32.2 1.5E+02 0.0052 22.5 7.3 76 7-87 10-91 (201)
337 3qye_A TBC1 domain family memb 32.2 2.4E+02 0.0082 24.1 9.6 129 80-212 164-309 (331)
338 2fe3_A Peroxide operon regulat 31.8 72 0.0025 23.4 4.8 61 21-82 9-73 (145)
339 2f6m_A Suppressor protein STP2 31.1 94 0.0032 19.1 4.3 46 404-449 4-49 (65)
340 2r9g_A AAA ATPase, central reg 30.4 2E+02 0.0068 22.6 9.4 63 200-263 14-84 (204)
341 2pnn_A Transient receptor pote 30.1 1.8E+02 0.0061 23.7 7.7 20 76-95 21-40 (273)
342 3qil_A Clathrin heavy chain 1; 30.0 72 0.0025 22.6 4.0 48 6-56 39-86 (125)
343 2w57_A Ferric uptake regulatio 29.7 78 0.0027 23.4 4.7 57 24-81 7-68 (150)
344 2fu4_A Ferric uptake regulatio 29.6 99 0.0034 19.7 4.7 14 66-79 53-66 (83)
345 3l6a_A Eukaryotic translation 29.2 2.3E+02 0.0078 24.8 8.2 97 170-281 16-117 (364)
346 2etb_A Transient receptor pote 29.1 67 0.0023 26.0 4.8 29 5-33 5-33 (256)
347 3ygs_P Procaspase 9; apoptosis 28.5 39 0.0013 22.8 2.6 65 19-85 24-88 (97)
348 2p1h_A APAF-1, apoptotic prote 27.9 1.1E+02 0.0037 20.3 4.7 60 18-81 24-83 (94)
349 3ljn_A Hypothetical protein; a 27.6 2E+02 0.0068 24.8 7.9 87 5-96 23-112 (364)
350 2o03_A Probable zinc uptake re 27.2 1.4E+02 0.0049 21.2 5.6 45 304-348 15-59 (131)
351 1n11_A Ankyrin; clathrin, BAND 26.9 3.3E+02 0.011 24.1 15.0 175 275-465 216-402 (437)
352 3eyy_A Putative iron uptake re 26.7 1.7E+02 0.006 21.3 6.1 28 213-240 33-60 (145)
353 1wdy_A 2-5A-dependent ribonucl 26.7 2.5E+02 0.0087 22.7 13.7 142 5-160 8-170 (285)
354 3bu8_A Telomeric repeat-bindin 25.6 76 0.0026 25.1 3.9 37 408-444 120-156 (235)
355 3twr_A Tankyrase-2; ankyrin re 25.5 2E+02 0.0067 21.0 8.9 84 41-134 12-102 (165)
356 2w57_A Ferric uptake regulatio 25.4 1.9E+02 0.0063 21.3 6.1 62 89-151 6-68 (150)
357 1ya0_A SMG-7 transcript varian 25.1 2.5E+02 0.0084 26.0 8.0 73 340-414 158-232 (497)
358 2crb_A Nuclear receptor bindin 24.3 83 0.0028 20.9 3.3 20 408-427 21-40 (97)
359 3mwm_A ZUR, putative metal upt 24.1 1.1E+02 0.0038 22.2 4.6 44 203-246 19-62 (139)
360 3eyy_A Putative iron uptake re 24.0 80 0.0028 23.2 3.8 59 21-81 6-68 (145)
361 1oai_A Nuclear RNA export fact 23.9 54 0.0018 19.7 2.3 24 347-370 33-56 (59)
362 2ijq_A Hypothetical protein; s 23.5 2.4E+02 0.0081 21.2 8.0 50 381-430 43-103 (161)
363 2ko4_A Mediator of RNA polymer 23.3 1.5E+02 0.005 19.0 4.1 36 55-90 24-61 (81)
364 4g8k_A 2-5A-dependent ribonucl 23.1 3.4E+02 0.012 22.9 9.1 42 121-165 287-328 (337)
365 2qq8_A TBC1 domain family memb 22.6 1.4E+02 0.0047 25.8 5.6 74 121-194 214-294 (334)
366 3t5v_B Nuclear mRNA export pro 22.4 4.4E+02 0.015 23.9 10.5 63 67-129 178-249 (455)
367 2qx5_A Nucleoporin NIC96; mRNA 21.6 5.5E+02 0.019 24.7 13.9 85 378-462 451-564 (661)
368 2zu6_B Programmed cell death p 21.3 3.8E+02 0.013 22.7 11.6 27 139-165 7-33 (307)
369 4hbd_A KN motif and ankyrin re 20.9 1.7E+02 0.006 24.0 5.8 87 103-190 146-237 (276)
370 1ug3_A EIF4GI, eukaryotic prot 20.3 4.2E+02 0.014 22.8 10.3 192 272-476 15-232 (339)
371 1wty_A Hypothetical protein TT 20.2 2.3E+02 0.0078 19.8 8.0 74 349-430 3-80 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-43 Score=340.20 Aligned_cols=456 Identities=10% Similarity=-0.024 Sum_probs=361.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCC--CCCcchHHHHHHHHHhcC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMR--NPSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~ 79 (477)
|..+++.+.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|+.+|+.+. .+++.+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 4566677777777777777777777543 455666777777777777777777777764 366777777777777777
Q ss_pred CCchHHHHHHHHHhC---------------CCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 80 PSEEPVKLFALLKNL---------------GIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
++++|.++|+++... +.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 777777777742211 12234567777777777777777777777777765432 33444444443
Q ss_pred HHhcCChhhHHHH---hcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhH
Q 042503 145 YTSCGQMDDGMKV---FDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 145 ~~~~g~~~~A~~~---~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 215 (477)
+...++.+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..+.+.|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 3333222211110 111111 2233455557778889999999999999987 788999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|..+|+++.
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999998875 4477889999999999999999999999999776 7888899999999999999999999999875
Q ss_pred C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH
Q 042503 296 R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH 372 (477)
Q Consensus 296 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (477)
+ .+..+|+.++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLL 477 (597)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 4 457789999999999999999999999999875 668889999999999999999999999999853 2557889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-------SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|.++.+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999988 44777 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|.+.|++++|.+.++++++..
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-40 Score=320.60 Aligned_cols=439 Identities=9% Similarity=-0.014 Sum_probs=381.7
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCC------------------
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP------------------ 63 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------ 63 (477)
+..++.+|...|++++|..+++.+... ++++.+++.++.+|.+.|++++|+++|+++...
T Consensus 120 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 120 AFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 356788999999999999999988654 678899999999999999999999999965443
Q ss_pred -CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHH--HH-HHHHHHhcccCcchHHH
Q 042503 64 -SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ--CV-HGEIIRSGFERFGSIRI 139 (477)
Q Consensus 64 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~ 139 (477)
++.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 37899999999999999999999999999864 234555555655554443322211 11 44555555666677788
Q ss_pred HHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChh
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDS 214 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 214 (477)
.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|+++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 889999999999999999999988 8899999999999999999999999999874 46778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 215 EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+|..+++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. |.+..+|..++..|.+.|++++|.++|+++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998653 5678899999999999999999999999999987 778889999999999999999999999987
Q ss_pred CC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---CCCC
Q 042503 295 PR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH---SIVP 368 (477)
Q Consensus 295 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 368 (477)
.+ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.+.. +..|
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 54 477899999999999999999999999999875 6689999999999999999999999999997431 5567
Q ss_pred C--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 369 N--LEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 369 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..+|..++.+|.+.|++++|.+.++++++.+|.++..+..++.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 7 789999999999999999999999998 33 4478999999999999999999999999999999999999999988
Q ss_pred HHH
Q 042503 445 IYA 447 (477)
Q Consensus 445 ~~~ 447 (477)
+|.
T Consensus 593 ~~~ 595 (597)
T 2xpi_A 593 ALE 595 (597)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.6e-31 Score=241.83 Aligned_cols=372 Identities=13% Similarity=0.102 Sum_probs=278.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556666666666666665532 2233444445555566666666666666666543 22555666666666666666
Q ss_pred hhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 152 DDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 152 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
++|...|+++.+ | +...|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666543 2 334566666677777777777777766654 3 334566677777778888888888888776
Q ss_pred cCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeH
Q 042503 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSW 302 (477)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 302 (477)
.. +.+..++..+...+...|+++.|...++++.+.+ |.....+..+...+...|++++|...|++..+ .+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 53 3346677777777888888888888888888776 67777888888888888888888888876653 345678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 888889999999999999999998875 556778889999999999999999999998843 36678889999999999
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.|++++|.+.++++ ...| +..++..++.++.+.|++++|...++++++..|.++.++..++..+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999998 4444 467889999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-29 Score=233.34 Aligned_cols=353 Identities=12% Similarity=0.071 Sum_probs=312.2
Q ss_pred HHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCCh
Q 042503 106 LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 182 (477)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999886433 556777788889999999999999987765 4667899999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHH
Q 042503 183 DKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 183 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
++|.+.|+++.. | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999874 4 45579999999999999999999999998864 3345566778888899999999999999999
Q ss_pred HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
+.. |.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..+
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 987 88889999999999999999999999998865 345678889999999999999999999998875 557889
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+..++...|++++|...|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ..+++..++..++..+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999853 2456778999999999999999999999998 335577899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|++++|...++++++..|+++.++..++.+|.+.|++++|...++++++.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999875
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.4e-29 Score=232.01 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=133.6
Q ss_pred chHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 82 EEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|.+.+...++.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~----- 81 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS----- 81 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh-----
Confidence 34455666777776655543 578888999999999999999999999999988888888888887776543210
Q ss_pred cCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 042503 161 MSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV 236 (477)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 236 (477)
+.+.+++|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 82 -----------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 82 -----------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred -----------------hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 12223444444444432 555556666666666666666666666666555566655555
Q ss_pred HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCch
Q 042503 237 AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGE 316 (477)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (477)
.+|.+|++.|+++.|.++++.|.+.|+ .||..+|++|+.+|++.|+.+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~--------------------------------~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEV--------------------------------VPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------------------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------------------CCCHHHHHHHHHHHhhCCCHH
Confidence 555555555555555555555555554 577778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
+|.+++++|.+.|..|+..||+.++..|...
T Consensus 193 ~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888777654
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-27 Score=223.85 Aligned_cols=432 Identities=10% Similarity=-0.041 Sum_probs=249.6
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 79 (477)
......+...|++++|...++.+++.. |++..+..+..++.+.|++++|+..|+.+.+ .+..+|..+..++.+.|
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 345566677778888888888777775 5677777777777778888888877776654 34457777777777778
Q ss_pred CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHH---hcCChhhHHH
Q 042503 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYT---SCGQMDDGMK 156 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~ 156 (477)
++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..... .......+..
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 8888888887777754 34444444444444333222222222222111111111100000000000 0000001111
Q ss_pred Hhccc---------CC-CchHHhHHHHHHHHh---cCChHHHHHHHHhcCC----------------C-ChhhHHHHHHH
Q 042503 157 VFDEM---------SH-RDVIVRNLMIHGFCK---KGDVDKGLYLFREMRE----------------R-SVVSWNLMISS 206 (477)
Q Consensus 157 ~~~~~---------~~-~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~ 206 (477)
.+... .. .+...+......+.. .|++++|...|+++.+ | +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11111 11 123334444444443 6777777777766544 1 23456667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+...|++++|...++.+.... |+...+..+..++...|+++.|...++.+.+.. |.+..++..+...+...|++++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHH
Confidence 777777777777777777654 236666667777777777777777777777665 5556666667777777777777
Q ss_pred HHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777666532 234556666666666777777777777766653 334556666666666777777777777666532
Q ss_pred cCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVPN----LEHYGCMVDVLGR---SGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
..-.++ ...+..+...+.. .|++++|.+.++++ .. +.+..++..++..+...|++++|...++++++..|.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 211222 2356666666666 67777777776666 22 234556666666677777777777777777777766
Q ss_pred CCchHHHH
Q 042503 435 NSGNYVLL 442 (477)
Q Consensus 435 ~~~~~~~l 442 (477)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 65555444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-27 Score=222.78 Aligned_cols=425 Identities=10% Similarity=-0.067 Sum_probs=320.7
Q ss_pred hhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 042503 34 NLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACL 111 (477)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 111 (477)
...+......+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45667777888888999999999888765 788888888889999999999999999888764 445667888888888
Q ss_pred ccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----CchHHhHHH---HHHHHhcCChHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLM---IHGFCKKGDVDK 184 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~~~ 184 (477)
..|++++|...|+.+.+.++. +......++..+........+.+.+..+.. ++...+..- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 899999999999888887543 444444455544444444444433322211 111000000 000001111111
Q ss_pred HHHHHHhcCC---------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHH
Q 042503 185 GLYLFREMRE---------R-SVVSWNLMISSLGK---SGRDSEALRLFHEMRD-----QAFE--------LDEATVVAV 238 (477)
Q Consensus 185 a~~~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 238 (477)
+...+..... | +...+......+.. .|++++|...|+++.. .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112221111 1 13445555555554 8999999999999987 3112 234567778
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+...|+++.|...++.+.+.. |. ..++..++..+...|++++|...++++.+ .+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999999988 55 88889999999999999999999998765 3567888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999875 5567789999999999999999999999998532 45677899999999999999999999998
Q ss_pred c-C---CCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 396 M-S---IRPN----AAIWGSLLSSCRT---HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 396 ~-~---~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+ . ..++ ...+..++..+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8 2 2222 3488999999999 99999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 042503 465 NN 466 (477)
Q Consensus 465 ~~ 466 (477)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 64
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.7e-28 Score=224.72 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc---------ccchHHHHHHHHHhCCccchh
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA---------VDIGQWIHSYAESSGLYRKVV 268 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 268 (477)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|+.|...|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~----- 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV----- 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-----
Confidence 35788899999999999999999999999999999999999999987765 3556677777777766
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 348 (477)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 102 ---------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 102 ---------------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred ---------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 35566666666667777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHHHHHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 414 (477)
++++|.++|++|. ..|+.||..+|+.|+.+|++.|++++|.++|++| +..|+..||+.++..|..
T Consensus 155 ~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 155 DADKAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777776 4677777777777777777777777777777777 667777777777666654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=6.1e-26 Score=218.14 Aligned_cols=419 Identities=9% Similarity=-0.020 Sum_probs=250.9
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKA 109 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 109 (477)
....+..+...+.+.|++++|+..|+++.. .++.+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345677777888888888888888887754 456778888888888888888888888888754 4456677778888
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCC------chHHhHHHHHHHHhcCChH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHR------DVIVRNLMIHGFCKKGDVD 183 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 183 (477)
+...|++++|...++ .....+.+ ....+..+...+....|...++.+... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888888888888885 33222221 122233445555667777777776541 1111123333444445555
Q ss_pred HHHHHHHhcCCCChh---hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHhhc
Q 042503 184 KGLYLFREMRERSVV---SWNLMISSLGK--------SGRDSEALRLFHEMRDQAFELD--------EATVVAVLPICAR 244 (477)
Q Consensus 184 ~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~l~~~~~~ 244 (477)
.+...+......+.. ....+...+.. .|++++|..+++.+.+.. |+ ...+..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 554444444432222 22222222211 135666666666665542 22 1134444455566
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVEL 321 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (477)
.|+++.|...++.+.+.. |. ...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 666667777766666665 33 55566666666666777777666666543 3445566666666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S--- 397 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 397 (477)
++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++ .
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 77666654 3345566666666667777777777776666322 344556666666677777777777766665 1
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 398 ----IRPNAAIWGSLLSSCRTH----------GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 398 ----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.......+......+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++.+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111122334444555555 677777777777777777666677777777777777777777776666
Q ss_pred hC
Q 042503 464 EN 465 (477)
Q Consensus 464 ~~ 465 (477)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.9e-25 Score=206.89 Aligned_cols=334 Identities=12% Similarity=0.023 Sum_probs=208.1
Q ss_pred CCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHH
Q 042503 98 PDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIH 174 (477)
Q Consensus 98 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 174 (477)
.+...+..+...+.+.|++++|..+|+.+++..+ .+...+..++.++...|++++|...|+++.+ .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445555566666666666666666666655422 2445555555555555666555555555443 22334444444
Q ss_pred HHHhcCChHHHHHHHHhcCC--CC-h---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Q 042503 175 GFCKKGDVDKGLYLFREMRE--RS-V---VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (477)
+|.+.|++++|.+.|+++.+ |+ . ..+..++..+.. ..+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 44445555555544444433 11 1 223333222000 0011112335556666
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+.|...++.+.+.. |.+..++..++.+|.+.|++++|...|+++.+ .+..+|..++.++...|++++|...++++
T Consensus 160 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666555 55566666666666666777666666666543 34566777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHH------------HHHhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHH
Q 042503 326 IAKGVSPNKATFVGV------------LTCCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 326 ~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 388 (477)
.... +.+...+..+ ..++...|++++|...|+++.+. .|+ ...+..+..++.+.|++++
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7653 3344444443 77788888888888888888743 233 3467788888888899999
Q ss_pred HHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcC----
Q 042503 389 AYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI------------YAEGG---- 450 (477)
Q Consensus 389 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 450 (477)
|+..++++ ...| +...|..++.+|...|++++|...++++++..|.++..+..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99888887 3344 578888888889899999999999999999888888888888843 44445
Q ss_pred -CchHHHHHHHH
Q 042503 451 -RWDDAETLRMW 461 (477)
Q Consensus 451 -~~~~A~~~~~~ 461 (477)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 55666777776
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.3e-24 Score=208.90 Aligned_cols=428 Identities=8% Similarity=-0.046 Sum_probs=331.6
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhc
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLN 78 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 78 (477)
+..+...+...|++++|...++.+++.. |.++..+..+..++.+.|++++|++.|+++.+ .+..+|..+...+...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 4556778889999999999999999987 45788999999999999999999999998765 4567899999999999
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcc--cCcchHHHHHHHHHHhcCChhhHHH
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGF--ERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
|++++|.+.|+.+ .. .|+.. ...+..+...+....|...++.++...+ .+........+..+....+.+.+..
T Consensus 107 g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999743 32 23322 2223344455566788888888865321 1112223344555677888888888
Q ss_pred HhcccCCCchH---HhHHHHHHHHh--------cCChHHHHHHHHhcCC--CC--------hhhHHHHHHHHHhcCChhH
Q 042503 157 VFDEMSHRDVI---VRNLMIHGFCK--------KGDVDKGLYLFREMRE--RS--------VVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 157 ~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~ 215 (477)
.+......+.. ....+...+.. .|++++|.+.|+++.+ |+ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 88887763332 33333333222 3588999999999876 33 2257777788899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
|...++..... .|+...+..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...|+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999986 4567888899999999999999999999999988 7788899999999999999999999999876
Q ss_pred C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----
Q 042503 296 R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP---- 368 (477)
Q Consensus 296 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 368 (477)
+ .+...|..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 4 356788999999999999999999999999875 66678899999999999999999999999874321111
Q ss_pred ChHHHHHHHHHHHhc----------CCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 369 NLEHYGCMVDVLGRS----------GCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
....+..+...+.+. |++++|...|+++ .. +.+...+..++.++...|++++|.+.++++++..|.++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 122344556677777 9999999999998 33 44568899999999999999999999999999999876
Q ss_pred chHH
Q 042503 437 GNYV 440 (477)
Q Consensus 437 ~~~~ 440 (477)
....
T Consensus 497 ~~~~ 500 (537)
T 3fp2_A 497 EKLQ 500 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.4e-24 Score=201.20 Aligned_cols=379 Identities=11% Similarity=0.035 Sum_probs=259.1
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHH
Q 042503 51 KYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEII 127 (477)
Q Consensus 51 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (477)
..+...|.+... .++..|..++..+.+.|++++|.++|+++.+.. +.+..++..+..++...|++++|...++.++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444554443 345688999999999999999999999999863 5578889999999999999999999999999
Q ss_pred HhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-h---HHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHH
Q 042503 128 RSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-V---IVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWN 201 (477)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (477)
+.++. +...+..++.+|.+.|++++|.+.|+++.+ |+ . ..+..+...+.. ..+.
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~ 147 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLR 147 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHH
Confidence 97644 677889999999999999999999999876 33 3 555555444211 1122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 202 LMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
.+...+...|++++|...|+.+.... +.+...+..+..++...|+++.|...++.+.+.. |.+..++..++..|...
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 33444555666666666666665542 3345555566666666666666666666666554 55556666666666666
Q ss_pred CChHHHHHHhccCCC--C-CceeHHHH------------HHHHHhcCCchHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 042503 282 GILDTARNVFKEIPR--K-NVVSWNAM------------ISGLAFNGRGELGVELYEQMIAKGVSPN----KATFVGVLT 342 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~ 342 (477)
|++++|...|+++.+ | +...+..+ +..+...|++++|..+|+++.+.. +.+ ...+..+..
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICH 303 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 666666666665543 2 22233333 777888899999999999888753 223 346777888
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHH---------
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSS--------- 411 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~--------- 411 (477)
++.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 888999999999999888743 2456788888889999999999999999888 55565 4555555533
Q ss_pred ---HHHcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchHHH
Q 042503 412 ---CRTHG-----HVELAEHAVKE-LINLEPWNSG----------NYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 412 ---~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~ 456 (477)
|...| +.+++.+.|++ +++..|++.. .+..+..+|...|+.+++.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 22333 56778888886 6777765432 4556667777777666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.2e-21 Score=177.79 Aligned_cols=304 Identities=11% Similarity=0.011 Sum_probs=156.6
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHH
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLG 208 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 208 (477)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.|+++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566667777777777777777777654 3455666677777777777777777776654 2 4456667777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHhhccCcccchHHHHHHHHHhCCccchhHHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFEL----DEATVVAV------------LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN 272 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (477)
..|++++|...|+++.+. .| +...+..+ ...+...|+++.|...++.+.+.. |.+..++.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 777777777777776654 23 22233222 244455555555555555555554 44444555
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV--------- 340 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------- 340 (477)
.+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 233344444555555555555555555554432 2222222211
Q ss_pred ---HHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 042503 341 ---LTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSS 411 (477)
Q Consensus 341 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 411 (477)
...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.+.+++. ...| +...+..++..
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 333444444555555444444211 1111 11223344444444444444444444 2122 33444444444
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+...|++++|...++++++.+|.++.++..+..+
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=5.8e-22 Score=179.95 Aligned_cols=296 Identities=13% Similarity=0.033 Sum_probs=245.2
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 241 (477)
++..+..+...+...|++++|.+.|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456677888889999999999999998865 356688889999999999999999999988763 3366778888899
Q ss_pred hhccCcccchHHHHHHHHHhCCcc---chhHHHHHH------------HHHHHhcCChHHHHHHhccCCC---CCceeHH
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYR---KVVSVGNAL------------VDFYCKCGILDTARNVFKEIPR---KNVVSWN 303 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 303 (477)
+...|+++.|...++.+.+.. | .+...+..+ ...+...|++++|...++++.+ .+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999999999998876 6 666666666 6888999999999999998764 4567788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH---------
Q 042503 304 AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG--------- 374 (477)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 374 (477)
.+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHH
Confidence 88889999999999999999998875 6678889999999999999999999999988532 33333333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhc-CCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 375 ---CMVDVLGRSGCVREAYDLIRSM-SIRPNA-----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 375 ---~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+...+.+.|++++|...++++ ...|+. ..+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366788999999999999988 334442 2355677889999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 042503 446 YAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.+.|++++|...+++.++..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-20 Score=169.29 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=195.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-
Q 042503 171 LMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG- 246 (477)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~- 246 (477)
.+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 333344444444444444444432 233344555556666666666666666666542 234455555666666666
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
+++.|...++.+.+.. |.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++
T Consensus 106 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666655 55666677777777777777777777776653 234566777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS-------IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|...+++.
T Consensus 184 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 184 QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888765 56678888888888889999999988888764221 1344568888899999999999999999888
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCch
Q 042503 397 -SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA-EGGRWD 453 (477)
Q Consensus 397 -~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 453 (477)
.. +.+...+..+..++...|++++|.+.++++++..|.++..+..++.++. ..|+.+
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 33 3356788889999999999999999999999999999999999999884 556543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=5.8e-21 Score=174.09 Aligned_cols=278 Identities=12% Similarity=-0.019 Sum_probs=205.5
Q ss_pred cCChHHHHH-HHHhcCC-----C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Q 042503 179 KGDVDKGLY-LFREMRE-----R--SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDI 250 (477)
Q Consensus 179 ~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (477)
.|++++|.+ .|++... | +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455555555 5554432 1 23456666667777777777777777766653 3355566666667777777777
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHH---------------HHHHHHhc
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNA---------------MISGLAFN 312 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~ 312 (477)
|...++.+.+.. |.+..++..++..+...|++++|...|+++.+ | +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777777666 56666777777777777777777777776543 1 1111110 23333488
Q ss_pred CCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSP--NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
|++++|...++++.+.. +. +..++..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999875 33 5889999999999999999999999999853 2556789999999999999999999
Q ss_pred HHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchHHHH
Q 042503 391 DLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN-----------SGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 391 ~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
..|+++ ... .+...+..++.++...|++++|...++++++..|.+ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998 333 457899999999999999999999999999988877 7899999999999999999998
Q ss_pred HHHHH
Q 042503 458 LRMWM 462 (477)
Q Consensus 458 ~~~~~ 462 (477)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-20 Score=166.71 Aligned_cols=266 Identities=10% Similarity=-0.002 Sum_probs=234.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|+++.|...++.+.+.. |.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 456678888999999999999999999998774 4455667778888899999999999999999987 7888899999
Q ss_pred HHHHHhcC-ChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 275 VDFYCKCG-ILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 275 ~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 356789999999999999999999999999875 55567777899999999999
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----------CCCHHHHHHHHHHHHHcCChH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----------RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~ 419 (477)
++|...++++.+. .+.+...+..+...+...|++++|...++++ .. +.+..++..++.++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999843 3566788999999999999999999999888 11 334578999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|...++++++..|.++..+..++.+|.+.|++++|.+.+++.++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999887653
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.4e-19 Score=171.24 Aligned_cols=365 Identities=10% Similarity=-0.025 Sum_probs=242.8
Q ss_pred CcchHHHHHHHHHh----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcc
Q 042503 64 SVLLFNSMIKAYSL----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFG 135 (477)
Q Consensus 64 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 135 (477)
++.++..+...|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|...|+...+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 445555555555554432 33344444444444 455555555555554433 33
Q ss_pred hHHHHHHHHHHh----cCChhhHHHHhcccCC-CchHHhHHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHH
Q 042503 136 SIRIGVVELYTS----CGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCK----KGDVDKGLYLFREMRE-RSVVSWNLMIS 205 (477)
Q Consensus 136 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~ 205 (477)
..+..|...|.. .+++++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .+...+..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444544 4555555555555433 234445555555554 5666677777666544 45556666777
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 206 SLGK----SGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 206 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
.|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++.+.+.+. +..+..+...
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN----SIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC----HHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHH
Confidence 7766 677788888887777654 44455555555554 6777778888877776652 3344566777
Q ss_pred HHh----cCChHHHHHHhccCCC-CCceeHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 278 YCK----CGILDTARNVFKEIPR-KNVVSWNAMISGLAFN-----GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 278 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
|.. .+++++|...|++..+ .++..+..+...+... +++++|..++++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 776 7888888888887765 4556777777777776 89999999999998876 445667777777665
Q ss_pred c---cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cC
Q 042503 348 G---LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HG 416 (477)
Q Consensus 348 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 416 (477)
| ++++|...|++..+ . .+...+..|...|.. .+++++|.+.|++.-...++..+..+...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 5 88999999999985 3 467788888888888 89999999999998223467888889999988 89
Q ss_pred ChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 042503 417 HVELAEHAVKELINLEPW---NSGNYVLLSNIYAE 448 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (477)
++++|...|+++.+.+|. ++.+...++.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 66666666665543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.4e-18 Score=166.21 Aligned_cols=417 Identities=9% Similarity=-0.024 Sum_probs=293.7
Q ss_pred HHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC
Q 042503 22 HAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP 98 (477)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 98 (477)
++..++.. |.+...|..++.. .+.|++++|+.+|+.+.. | +...|...+..+.+.|++++|.++|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444444 4577888888884 778999999999998876 4 4568999999999999999999999999985 47
Q ss_pred CcccHHHHHHHh-hccCCchhHHH----HHHHHHHh-cccC-cchHHHHHHHHHHh---------cCChhhHHHHhcccC
Q 042503 99 DEYTFAPLLKAC-LGVGDLRVGQC----VHGEIIRS-GFER-FGSIRIGVVELYTS---------CGQMDDGMKVFDEMS 162 (477)
Q Consensus 99 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 162 (477)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777777666533 34677777765 66666553 4444 44567777766554 677888888888776
Q ss_pred C-Cch---HHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH------HcC---CC
Q 042503 163 H-RDV---IVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR------DQA---FE 229 (477)
Q Consensus 163 ~-~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~ 229 (477)
+ |.. ..|..........|. ..+..++. .+.+++..|..++.... +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 5 321 222222111100110 01111111 12345566666665422 111 24
Q ss_pred CCH--------HHHHHHHHHhhcc----Ccc----cchHHHHHHHHHhCCccchhHHHHHHHHHHHh-------cCChH-
Q 042503 230 LDE--------ATVVAVLPICARL----GAV----DIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-------CGILD- 285 (477)
Q Consensus 230 ~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~- 285 (477)
|+. ..|...+...... ++. ..+..+++++.... |.++.+|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 431 3344433322211 222 25677899888876 8889999999998886 68987
Q ss_pred ------HHHHHhccCCC---C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhhccccHHHH
Q 042503 286 ------TARNVFKEIPR---K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN-K-ATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 286 ------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a 353 (477)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999998764 3 4567888999999999999999999999986 443 3 5788888888899999999
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDV-LGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
..+|++..+.. +.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++.
T Consensus 376 ~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999998532 2233334332222 34689999999999988 3344 578899999999999999999999999999
Q ss_pred cCCCCCc----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 431 LEPWNSG----NYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 431 ~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..|.++. .|..++......|+.+.+..+.+++.+.-
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9877666 78888898899999999999999887653
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.7e-20 Score=172.59 Aligned_cols=371 Identities=11% Similarity=-0.021 Sum_probs=189.8
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhC-----C---CCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhccc---
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-----G---IWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE--- 132 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 132 (477)
....||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...+++..+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777765431 1 1112345666666677777777777776666542110
Q ss_pred ---C-cchHHHHHHHHHHhc--CChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHH
Q 042503 133 ---R-FGSIRIGVVELYTSC--GQMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLM 203 (477)
Q Consensus 133 ---~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 203 (477)
+ ...++..+..++... +++++|...|++..+ |+ ...+..+..++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 0 112333333333322 245555555554433 21 222222222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh----hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC----ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
.+...++.++|+..+++..+.. +.+...+..+...+ ...++.+.|...++++.... |....++..+...|.
T Consensus 184 --~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 184 --RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYR 258 (472)
T ss_dssp --HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHH
Confidence 1222344444444444444332 11222222222222 12234444444554444444 444444444555555
Q ss_pred hcCChHHHHHHhccCCC--C-CceeHHHHHHHHH-------------------hcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 280 KCGILDTARNVFKEIPR--K-NVVSWNAMISGLA-------------------FNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
..|++++|...|++..+ | +..++..+..+|. ..+.++.|...+++..+.. +.+..++
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 55555555555544432 1 2223333332221 1233567888888887765 5566678
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNL--EHYGCMVD-VLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCR 413 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 413 (477)
..+..++...|++++|+..|++..+ ....+.. ..+..+.. .+...|++++|+..|++. .+.|+......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------ 410 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------ 410 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH------
Confidence 8889999999999999999999874 3222211 12333332 234778999999999988 66676543322
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccC
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 476 (477)
....+..++++.++.+|.++.++..++.+|...|++++|++.+++.++.|.......+|+
T Consensus 411 ---~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 ---MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999999987777777775
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.4e-18 Score=162.77 Aligned_cols=364 Identities=12% Similarity=0.015 Sum_probs=301.7
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHh----cCChhh
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTS----CGQMDD 153 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 153 (477)
..+++.++...+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33456666665544 67777777777776 899999999999998875 56678888888988 899999
Q ss_pred HHHHhcccCC-CchHHhHHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHH
Q 042503 154 GMKVFDEMSH-RDVIVRNLMIHGFCK----KGDVDKGLYLFREMRE-RSVVSWNLMISSLGK----SGRDSEALRLFHEM 223 (477)
Q Consensus 154 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 223 (477)
|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+.+|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999998766 466777888888888 8899999999999876 466788888888887 78999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh----cCChHHHHHHhccCC
Q 042503 224 RDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK----CGILDTARNVFKEIP 295 (477)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 295 (477)
.+.| +...+..+...+.. .++.++|...+++..+.+. +..+..+...|.. .+++++|...|++..
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8875 66777777777776 8999999999999988762 3456778888886 889999999999876
Q ss_pred C-CCceeHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-----ccHHHHHHHHHHhhhccC
Q 042503 296 R-KNVVSWNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA-----GLVEKARELFASMTGLHS 365 (477)
Q Consensus 296 ~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 365 (477)
+ .++..+..+...+.. .+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+ .
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~- 325 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q- 325 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T-
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c-
Confidence 5 466677778888887 899999999999998775 455677777777776 899999999999985 3
Q ss_pred CCCChHHHHHHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCch
Q 042503 366 IVPNLEHYGCMVDVLGRSG---CVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+...+..+...|...| ++++|+++|++.-...++..+..+...|.. .+++++|...++++.+.+ ++.+
T Consensus 326 --~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 --GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp --TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred --CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 35567888888888766 889999999998223578899999999998 899999999999999875 4889
Q ss_pred HHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 042503 439 YVLLSNIYAE----GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 439 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 467 (477)
+..++.+|.+ .+++++|..++++..+.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999998 8999999999999998763
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=2.9e-20 Score=165.62 Aligned_cols=280 Identities=9% Similarity=0.056 Sum_probs=115.8
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 46 TLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999655 4899999999999999999999965 25777999999999999999999998887
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHH
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMIS 205 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 205 (477)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 44577888999999999999998888864 77779999999999999999999999987 47999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 206 SLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999987 27788888899999999888885544331 122222345777788888888
Q ss_pred HHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHH-cCCCC------CHHHHHHHHHHhhccccHHHHHH
Q 042503 286 TARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIA-KGVSP------NKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 286 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
+|..+++....- ....|+-+.-++++- ++++..+.++.... .+++| +...|.-+...|.+.++++.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 888888776543 334566665555543 33444333333222 22222 23445666666666677776655
Q ss_pred H
Q 042503 356 L 356 (477)
Q Consensus 356 ~ 356 (477)
.
T Consensus 304 t 304 (449)
T 1b89_A 304 T 304 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=3.5e-20 Score=168.67 Aligned_cols=259 Identities=12% Similarity=-0.046 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+..+...+.+.|++++|...|+++.... +.+...+..+..++...|+++.|...++++.+.. |.+..++..++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3446666666777777777777777766653 3355666666677777777777777777777665 666667777777
Q ss_pred HHHhcCChHHHHHHhccCCCC-------------CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRK-------------NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP--NKATFVGVL 341 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~ 341 (477)
.|...|++++|...|+++.+. ....+..+...+...|++++|..+++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 777777777777777766541 12234455788889999999999999999875 33 688999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
.++...|++++|...|+++.+. .+.+..+|..+..+|...|++++|+..|+++ ...| +..++..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999853 2556889999999999999999999999998 4444 4789999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 420 LAEHAVKELINLEPW------------NSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+|...++++++..|. +..+|..++.++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998866 367899999999999999999887754
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.4e-17 Score=165.46 Aligned_cols=379 Identities=11% Similarity=0.079 Sum_probs=289.7
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC-CC-----cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN-PS-----VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL 106 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 106 (477)
+|.--...+..|...|.+.+|+++++++.- |+ ....+.++.+..+. +..+..+..+++.... ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHH
Confidence 445556677888888999999999988763 22 34566677777766 5566666666554321 3447
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
...+...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 778888999999999998852 111222222 227789999999998774 4667889999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.++++....+. + .+
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GP 1193 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CC
Confidence 999775 667788889999999999999999999877654 33333345888899998887544432 1 33
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH 346 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 346 (477)
+...+..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 4455667999999999999999999986 48999999999999999999999886 356889999999999
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHc--CChHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTH--GHVELAE 422 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~--~~~~~a~ 422 (477)
.|++..|......+ ..++..+..++..|.+.|.+++|+++++.. +..|.. ..|..+...+.+. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998877543 346667889999999999999999999877 655544 4666666666654 4666777
Q ss_pred HHHHHHHhcCC-----CCCchHHHHHHHHHhcCCchHHHHH
Q 042503 423 HAVKELINLEP-----WNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 423 ~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+.|..-....| .+...|..+...|.+.|+++.|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77776666555 5678899999999999999999843
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.3e-17 Score=161.91 Aligned_cols=411 Identities=12% Similarity=0.103 Sum_probs=304.7
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhh--cccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHK--LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
..++++...|.+.+|..+++.++-.+ +..+....+.++....+. +..+..+..++....+ ...+...+...|.+
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCH
Confidence 46788999999999999999998442 113445666676666665 4455555555544322 45578888999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999998631 1222233332 678899999988865 25778889999999999999999999775
Q ss_pred CCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 162 SHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
.|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. . .++...+..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 5667788899999999999999999987664 44444556999999999988644432 2 45667777899
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHH
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
..|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999875 36788999999999999999999987 46688998889999999988887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh--cCCHHHHHHHHHhc-
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR--SGCVREAYDLIRSM- 396 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~- 396 (477)
..... +..+...+..++..|.+.|.+++|+.+++...... +-....|+.|...|.+ -++..++.+.|..-
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 76553 34456677788999999999999999998887422 3344566666666654 44666666666554
Q ss_pred CCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------cCCCCCchHHHHHHHHHhcC--------
Q 042503 397 SIRP------NAAIWGSLLSSCRTHGHVELAEHAVKELIN------------LEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 397 ~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
.++| +...|..+...|.+.|+++.|....-+... ..+.+++.|...+..|...+
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl 1423 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLL 1423 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHH
Confidence 4433 456788888889999999988843322211 13566778888888777666
Q ss_pred -------CchHHHHHHH
Q 042503 451 -------RWDDAETLRM 460 (477)
Q Consensus 451 -------~~~~A~~~~~ 460 (477)
+.+.+.++++
T Consensus 1424 ~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1424 MVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhhcCChHHHHHHHH
Confidence 6666666665
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=7.3e-19 Score=156.62 Aligned_cols=346 Identities=11% Similarity=0.040 Sum_probs=174.4
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFA 89 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (477)
...|++++|.+.++.+ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999998887 33469999999999999999999999764 677799999999999999999999888
Q ss_pred HHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHh
Q 042503 90 LLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVR 169 (477)
Q Consensus 90 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (477)
..++. .+++.+.+.++.++.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77763 4667889999999999999999998885 367779999999999999999999999987 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccc
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVD 249 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (477)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +..++.....++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999999999994 889999999999999999999665543 2334444667889999999999
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhc--CChHHHHHHhccCCC--------CCceeHHHHHHHHHhcCCchHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKC--GILDTARNVFKEIPR--------KNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
++..+++...... +.....|+.+.-+|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|.
T Consensus 225 Eai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999777 78888888888888764 466677777765443 35788999999999999999887
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 042503 320 ELYEQMIAK-GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMS 397 (477)
Q Consensus 320 ~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (477)
.. |.+. ...-+...|.-++.--....-+-+|...+= +. .|. ..+.|+.++...=+...+.++|++.+
T Consensus 303 ~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 303 IT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 63 4433 222334444444433222222333444332 11 233 46667777777777777777777774
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.1e-19 Score=160.80 Aligned_cols=260 Identities=12% Similarity=-0.054 Sum_probs=192.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. |.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 34455555556666666666666655542 2244455555555666666666666666666554 55555666666666
Q ss_pred HhcCChHHHHHHhccCCC--C-CceeHHHH--------------HH-HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPR--K-NVVSWNAM--------------IS-GLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 340 (477)
...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666665543 1 22222222 22 3667889999999999999875 5678899999
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCh
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~ 418 (477)
..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. +.+...+..++..+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999843 2556788999999999999999999999998 33 44578899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 419 ELAEHAVKELINLEPW------------NSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++|...++++++..|. ++..+..++.++.+.|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998 688999999999999999999999875543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=5.4e-18 Score=148.04 Aligned_cols=267 Identities=11% Similarity=-0.008 Sum_probs=188.1
Q ss_pred hcCChHHHHHHHHhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHH
Q 042503 178 KKGDVDKGLYLFREMRERS----VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQW 253 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 253 (477)
..|+++.|+..+++....+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555554433311 11233345555566666655554432 124444555555555566666666666
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN 333 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 333 (477)
.++.+...+..|.++.++..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 6666555543266677778888999999999999999998 4567788899999999999999999999999874 44
Q ss_pred HH-HH--HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 042503 334 KA-TF--VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSL 408 (477)
Q Consensus 334 ~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 408 (477)
.. .. ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22 11 22334445669999999999999854 4678889999999999999999999999998 4444 66789999
Q ss_pred HHHHHHcCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 409 LSSCRTHGHVEL-AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 409 ~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 999999999876 67899999999999876543 45555555555443
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.3e-19 Score=165.03 Aligned_cols=276 Identities=11% Similarity=0.068 Sum_probs=191.3
Q ss_pred cCChhhHHH-HhcccCC-----C--chHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHH
Q 042503 148 CGQMDDGMK-VFDEMSH-----R--DVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEA 216 (477)
Q Consensus 148 ~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 216 (477)
.|++++|.. .+++... | +...+..+...+.+.|++++|...|+++.+ .+..++..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554332 1 233455556666666666666666666543 2444566666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH----------------HHHHHHHh
Q 042503 217 LRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN----------------ALVDFYCK 280 (477)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 280 (477)
...|+++.+.. +.+...+..+..++...|+++.|...++.+.... |.+...+. .+...+ .
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 66666666553 3355566666666666666666666666666655 33332222 233333 8
Q ss_pred cCChHHHHHHhccCCC--C---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHH
Q 042503 281 CGILDTARNVFKEIPR--K---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
.|++++|...|+++.+ | +..++..+...+...|++++|...++++.... +.+..++..+..++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999998888764 3 35678888999999999999999999998875 5678889999999999999999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC------------CHHHHHHHHHHHHHcCChHHHH
Q 042503 356 LFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP------------NAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
.|+++.+.. +.+...+..+..+|.+.|++++|...|+++ ...| ...+|..++.++...|++++|.
T Consensus 273 ~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999988532 456788999999999999999999999888 2222 1678999999999999999999
Q ss_pred HHHHHHHh
Q 042503 423 HAVKELIN 430 (477)
Q Consensus 423 ~~~~~~~~ 430 (477)
.++++.++
T Consensus 351 ~~~~~~l~ 358 (368)
T 1fch_A 351 AADARDLS 358 (368)
T ss_dssp HHHTTCHH
T ss_pred HhHHHHHH
Confidence 98876543
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=8.9e-19 Score=159.41 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMIS 307 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 307 (477)
+...+..+...+.+.|+++.|...++.+.+.. |.+..++..++..|...|++++|+..|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44558888889999999999999999999998 88899999999999999999999999998764 45678999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNK----------ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.....++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998863 2122 2233457889999999999999999986432223688999999
Q ss_pred HHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
..|...|++++|++.|+++ .. +.+..+|..++.+|...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 33 446789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
...+++.++..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=7.5e-17 Score=154.15 Aligned_cols=407 Identities=9% Similarity=0.022 Sum_probs=281.8
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHH-HhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY-SLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~-~~~~ 79 (477)
..++. +...|++++|..+++.+++.. |.+...|..++..+.+.|++++|+.+|++... |++..|...+... ...|
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~ 94 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 94 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcc
Confidence 34555 356899999999999999875 56788999999999999999999999999876 8777888777543 3568
Q ss_pred CCchHHH----HHHHHHhC-CCCC-CcccHHHHHHHhhc---------cCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 80 PSEEPVK----LFALLKNL-GIWP-DEYTFAPLLKACLG---------VGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 80 ~~~~a~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..++....+....|......
T Consensus 95 ~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~ 174 (530)
T 2ooe_A 95 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKY 174 (530)
T ss_dssp TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Confidence 8888776 77766543 4433 44566666665543 68899999999999873111112333333222
Q ss_pred HHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHh-------cC------CCC--------hhhHHHH
Q 042503 145 YTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFRE-------MR------ERS--------VVSWNLM 203 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~--------~~~~~~l 203 (477)
....|. ..+..++.. +.++++.|..++.. +. .|+ ...|...
T Consensus 175 e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 175 EEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp HHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 111111 111111111 12333444443332 11 111 1344444
Q ss_pred HHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-------cCccc-------chHHHHHHHHHh
Q 042503 204 ISSLGKS----GRD----SEALRLFHEMRDQAFELDEATVVAVLPICAR-------LGAVD-------IGQWIHSYAESS 261 (477)
Q Consensus 204 ~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 261 (477)
+...... ++. +.+..+|++..... +-+...|......+.+ .|+++ .|..+++.+.+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4333222 222 36777888877752 4466777777776664 68876 889999998873
Q ss_pred CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-c-eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 262 GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-V-VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
-. |.+..+|..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|++++|..+|++..+.. +.+...+
T Consensus 316 ~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 22 77888999999999999999999999998764 32 2 478888888888999999999999998763 3333333
Q ss_pred HHHHHH-hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC--HHHHHHHHH
Q 042503 338 VGVLTC-CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN--AAIWGSLLS 410 (477)
Q Consensus 338 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~--~~~~~~l~~ 410 (477)
...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. .. .|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 332222 335899999999999988543 456788999999999999999999999998 22 332 448888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q 042503 411 SCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.....|+.+.+..+.+++.+..|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 888999999999999999998874
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.7e-18 Score=149.99 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=203.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDE--ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
++.....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .. ++...++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCC
Confidence 45567789999999998876543 3443 3456678899999999998876644 22 77888889999999999
Q ss_pred CChHHHHHHhccCCC----C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 282 GILDTARNVFKEIPR----K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
++.++|++.++++.. | ++..+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998642 4 455677778899999999999999987 56788999999999999999999999
Q ss_pred HHHhhhccCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 357 FASMTGLHSIVPNLEHY---GCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.++.++.+.|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999853 3543211 22334455669999999999999 44567789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCC
Q 042503 432 EPWNSGNYVLLSNIYAEGGRWDD-AETLRMWMRENN 466 (477)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 466 (477)
+|.++.++..++.++...|+.++ +.++++++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999888653
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.1e-17 Score=155.89 Aligned_cols=381 Identities=8% Similarity=-0.035 Sum_probs=227.9
Q ss_pred cchhHHHhHHHHHhhcCChhHHHHHhccCCC-----------C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCC----
Q 042503 32 QSNLILAHFVSVCGTLNEIKYATKIFNQMRN-----------P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLG---- 95 (477)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 95 (477)
.....|+.+..++...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999986532 2 34679999999999999999999999886531
Q ss_pred CC--C-CcccHHHHHHHhh--ccCCchhHHHHHHHHHHhcccCcchHHHHHHHH---HHhcCChhhHHHHhcccCC---C
Q 042503 96 IW--P-DEYTFAPLLKACL--GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL---YTSCGQMDDGMKVFDEMSH---R 164 (477)
Q Consensus 96 ~~--p-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~---~ 164 (477)
-+ + ...++.....++. ..+++++|...|++.++..+. +...+..+..+ +...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 1 2234544444444 346799999999999986543 44455555544 3455777888888876654 3
Q ss_pred chHHhHHHHHHHHh----cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 165 DVIVRNLMIHGFCK----KGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 165 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
+..++..+...+.. .|+.++|.+.+++... .+..++..+...+...|++++|...+++..+.. +-+...+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 44455555444433 4667788888877653 455677788888888888888888888877653 223444544
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGR 314 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 314 (477)
+..++...+... .... . ..........+.++.|...|++..+ .+...+..+...+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~--~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR--E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH--H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 444442211100 0000 0 0011111122335667777766543 456789999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 315 GELGVELYEQMIAKGVSPNKA--TFVGVLT-CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 315 ~~~a~~~~~~m~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
+++|...|++..+....+... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998875433321 2222222 23577999999999999884 24443322222 233344
Q ss_pred HHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 392 LIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 392 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
++++. ..+.+..+|..++.+|...|++++|++.|+++++.+|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44444 22445679999999999999999999999999999998888776654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.8e-18 Score=154.71 Aligned_cols=272 Identities=7% Similarity=-0.008 Sum_probs=166.4
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHH
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSL 207 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 207 (477)
+...+..+...+...|++++|..+|+++.+ .+...+..+...+...|++++|.+.|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344455666667777777777777776643 3445555666666666666666666666543 2444566666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH-HH-HHHhcCChH
Q 042503 208 GKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL-VD-FYCKCGILD 285 (477)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 285 (477)
...|++++|...++++.... +.+...+..+...+ +... ....+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDID-DLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHH-HHHHHHHhHHHHHcccHH
Confidence 66666666666666665542 11111111110000 0000 00001 11 244555566
Q ss_pred HHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666555443 244566667777777777777777777777664 55677777788888888888888888888764
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-------------AAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
.. +.+...+..+...|...|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++
T Consensus 235 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 445667777888888888888888888777 33333 567788888888888888888888766
Q ss_pred HhcC
Q 042503 429 INLE 432 (477)
Q Consensus 429 ~~~~ 432 (477)
++..
T Consensus 313 l~~~ 316 (327)
T 3cv0_A 313 VEPF 316 (327)
T ss_dssp SHHH
T ss_pred HHhc
Confidence 5543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=3.4e-17 Score=136.68 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|+++..+..+...+.+.|++++|...|++..+ .++..+..+..++.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56667777888888888888888888887655 345678888888899999999999999998875 66788888889
Q ss_pred HHhhcc-----------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHH
Q 042503 342 TCCAHA-----------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLL 409 (477)
Q Consensus 342 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 409 (477)
.++... |++++|+..+++..+.. +.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 999998 99999999999998532 456788999999999999999999999998 2227889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.++...|++++|+..++++++.+|.++..+..++.++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.9e-17 Score=139.10 Aligned_cols=229 Identities=10% Similarity=-0.043 Sum_probs=146.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|...+..+.+.. |.....+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~----- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHH-----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchH-----
Confidence 356667777777777888877777777665 566666666677777777777777776666543 21100000
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.....|..+...+...|++++|...++++... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00233445555556666666666666666554 2332 2344556677777777
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+++... .+.+...+..+...+...|++++|...+++. . .+.+...+..++.++...|++++|...++++++..|.+
T Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 129 EAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 776631 1334456666777777777777777777776 2 23345677777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..+..++.+|.+.|++++|...+++.++.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777777777777777777777777777654
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=6.7e-16 Score=143.80 Aligned_cols=379 Identities=10% Similarity=0.000 Sum_probs=178.8
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCCh---hHHHHHhccCCCCCcchHHHHHHHHHhcC--
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEI---KYATKIFNQMRNPSVLLFNSMIKAYSLNG-- 79 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-- 79 (477)
+...+...|++++|.++++...+.| ++..+..+..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444555666666666666666554 223344444555555555 66666666655555555555555444443
Q ss_pred ---CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 80 ---PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 80 ---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
++++|.+.|++..+.| +...+..+...+...+..+.+.+.++.+.......+......+...|...+.++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~-- 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH-- 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG--
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC--
Confidence 4456666666666544 22245555555544433332222222222211111233333333334333332222
Q ss_pred HhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHH
Q 042503 157 VFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSG---RDSEALRLFHEMRDQAFELDEA 233 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~ 233 (477)
.+.+..++......+...+..+...|...| ++++|+..|+...+.| .++..
T Consensus 161 -------------------------~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~ 214 (452)
T 3e4b_A 161 -------------------------LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQ 214 (452)
T ss_dssp -------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHH
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHH
Confidence 233344444444555557777777777777 7777777777777765 33333
Q ss_pred HHHHHHHHhhcc----CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHH-
Q 042503 234 TVVAVLPICARL----GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISG- 308 (477)
Q Consensus 234 ~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~- 308 (477)
.+..+...|... ++.++|...++.+. ..++..+..+...
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------------------------------------~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA------------------------------------PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG------------------------------------GGSTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc------------------------------------CCCHHHHHHHHHHH
Confidence 333333333322 34444444444443 2233344444444
Q ss_pred H--HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-----cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 309 L--AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-----LVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 309 ~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
+ ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++.. +-+...+..|...|.
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYR 329 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 2 24566667777777666655 4445555555554 33 6777777776554 334555556665555
Q ss_pred h----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhcCC
Q 042503 382 R----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIY--AEGGR 451 (477)
Q Consensus 382 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~ 451 (477)
. ..++++|.++|++.-..-+......+...|.. .+|.++|...|+++.+.++. .+...+..+. ...++
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~ 407 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQ 407 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHH
Confidence 4 33677777777766222233444555555543 34677777777777766643 2223333332 22334
Q ss_pred chHHHHHHHHHHh
Q 042503 452 WDDAETLRMWMRE 464 (477)
Q Consensus 452 ~~~A~~~~~~~~~ 464 (477)
..+|..+.++-.+
T Consensus 408 ~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 408 RAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556555555433
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.3e-16 Score=133.04 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCC----HHHHH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPN----KATFV 338 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 338 (477)
....+..+...+...|++++|...|+++.+ .+...|..+..++...|++++|...+++..+... .++ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445567778888888888888888776543 5667788888899999999999999999887531 112 57888
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 416 (477)
.+..++...|++++|...|+++.+. .|+. ..+...|++++|...++++ ...|+ ...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999852 3443 4566778899999999998 44444 468889999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++++|...++++++..|.++.++..++.+|.+.|++++|...+++.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998754
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=5.1e-16 Score=135.04 Aligned_cols=241 Identities=12% Similarity=-0.020 Sum_probs=181.4
Q ss_pred hcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 209 KSGRDSEALRLFHEMRDQAFE---LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
..|++++|+..|+++.+.... .+...+..+...+...|+++.|...++.+.+.. |.+..++..++..+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134556667777777888888888888877776 677778888888888888888
Q ss_pred HHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|...|+++.+ .+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887764 356788888999999999999999999998864 3333344444555777999999999988774
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.. +++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 32 3444444 4677788888899999999888 43332 47888999999999999999999999999998764
Q ss_pred chHHHHHHHHHhcCCchHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
. ..+.++...|++++|++.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 4 4467788889999998776
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=8e-16 Score=133.60 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=139.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhh
Q 042503 169 RNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICA 243 (477)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~ 243 (477)
+......+...|++++|++.|++..+ | +...+..+...+...|++++|+..+++....+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666677777777777776653 2 344666677777777777777777777666321111 222555556666
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
..|+++.|...++.+.+.. |.+..++..+...|...|++++|...|++..+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------------------------- 136 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--------------------------- 136 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---------------------------
T ss_pred HcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---------------------------
Confidence 6666666666666666655 44445555555555555555555555555443
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhc----
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC---VREAYDLIRSM---- 396 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~---- 396 (477)
.. +.+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++.
T Consensus 137 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 137 ----PT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp ----SS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred ----cC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 21 2233333333312222235555555555554321 2234444445555555554 55555555544
Q ss_pred CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 397 SIRPN------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 397 ~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
...|+ ...+..+...|...|++++|.+.++++++.+|.++.++..+.......+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11222 2467778888888999999999999999999988888877777665544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=1.6e-15 Score=141.14 Aligned_cols=345 Identities=10% Similarity=0.016 Sum_probs=239.8
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh---hhHHHHhcccCCCchHHhHHHHHHHHhcC-
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM---DDGMKVFDEMSHRDVIVRNLMIHGFCKKG- 180 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 180 (477)
.+...+.+.|++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788999999999999998876 455566677777788888 99999999988776666777777565555
Q ss_pred ----ChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 181 ----DVDKGLYLFREMRER-SVVSWNLMISSLGKSGRDS---EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 181 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
+.++|.+.|++..++ +...+..|...|...+..+ .+...+......|. ......+...+...+.++.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 788999999988763 4557888888888776544 45555555555553 345556667777777666665
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcC---ChHHHHHHhccCCCC---CceeHHHHHHHHHhc----CCchHHHHHH
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCG---ILDTARNVFKEIPRK---NVVSWNAMISGLAFN----GRGELGVELY 322 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~ 322 (477)
.......+.-. ..++..+..+...|...| +.++|+..|++..+. +...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~-~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAAL-NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHT-TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 55444433322 334447788999999999 999999999987653 223336677777544 6899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-h--hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 042503 323 EQMIAKGVSPNKATFVGVLTC-C--AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-----CVREAYDLIR 394 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 394 (477)
++.. .| +...+..+... + ...+++++|...|++..+ .| +...+..|...|. .| ++++|.++|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 44 44556666665 3 568999999999999984 43 6778888888887 55 9999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 042503 395 SMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENN 466 (477)
Q Consensus 395 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (477)
+.- ..++.....+...|.. ..++++|...|+++.+.+ ++.+...|+.+|.. ..+.++|..++++..+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 998 7778888888887776 349999999999998754 57889999999985 458999999999999888
Q ss_pred Cc
Q 042503 467 VK 468 (477)
Q Consensus 467 ~~ 468 (477)
.+
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=3.3e-15 Score=134.80 Aligned_cols=245 Identities=9% Similarity=0.026 Sum_probs=167.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-ccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA-VDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
.|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|...++++.... |.+..+|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 34445555555555555555555555442 2233444555555555554 555555555555555 6666666666666
Q ss_pred HHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cccHHHH
Q 042503 278 YCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH-AGLVEKA 353 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 353 (477)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 6677777777776666654 345667777778888888888888888888875 5577788888888777 5554666
Q ss_pred -----HHHHHHhhhccCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcC--------C
Q 042503 354 -----RELFASMTGLHSIVPNLEHYGCMVDVLGRSG--CVREAYDLIRSMSIRP-NAAIWGSLLSSCRTHG--------H 417 (477)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~ 417 (477)
+..+++..+.. +.+...|..+..++...| ++++|++.++++...| +...+..++.+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 47777776432 445677888888888877 6888888888874344 4567888888888764 2
Q ss_pred -hHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 042503 418 -VELAEHAVKEL-INLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 418 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.++|+.+++++ .+.+|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 899999888898888877543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=8.1e-16 Score=131.09 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=110.2
Q ss_pred HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHH
Q 042503 234 TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLA 310 (477)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 310 (477)
.+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...|+++.+ .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34444444555555555555555555544 44455555555555555555555555554432 23345555556666
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666554 4455566666666666666666666666665321 334555666666666666666666
Q ss_pred HHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 391 DLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 391 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+.++++ . .+.+..++..++.++...|++++|...++++++..|.++..+..+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 666665 2 2233556666666666666666666666666666666665555554443
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=5e-15 Score=124.45 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=162.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
+.++..+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 55666777778888888888888888876653 345677888888888999999999999888875 55778888888
Q ss_pred HHhhcc-ccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 342 TCCAHA-GLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 342 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
.++... |++++|...++++.+ .+..| +...+..+...+...|++++|...++++ ...| +...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 899999 999999999999884 32223 3567888888999999999999999888 3333 47788888999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 418 VELAEHAVKELINLEP-WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999998 88888888888889999999999999888764
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.9e-15 Score=127.63 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
...+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45556666666666777777666666543 344566777777778888888888888887764 45677778888888
Q ss_pred hccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
...|++++|...++++.+ .+..| +...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888874 22233 4567777888888888888888888887 32 33567788888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...++++++..|.++..+..++.++.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888887654
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=3.8e-15 Score=129.30 Aligned_cols=223 Identities=9% Similarity=-0.006 Sum_probs=170.4
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCce----eHHHHHHHHHhc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVV----SWNAMISGLAFN 312 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~ 312 (477)
...+...|+++.|...++.+.+.. |.+..++..+...|...|++++|+..++++.+ ++.. .|..+...+...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444444443 45555566677777777777777777776554 2332 378888999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+. .+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 557788999999999999999999999999843 355677788888344445699999999
Q ss_pred HHhc-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCCchHHHHHH
Q 042503 393 IRSM-SIRPN-AAIWGSLLSSCRTHGH---VELAEHAVKELINLE---PWN-----SGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 393 ~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
|+++ ...|+ ...+..+..++...|+ +++|...++++++.. |.. ..++..++..|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998 44444 6788888899998888 888999999998775 432 257888999999999999999999
Q ss_pred HHHHhCC
Q 042503 460 MWMRENN 466 (477)
Q Consensus 460 ~~~~~~~ 466 (477)
++.++..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998764
No 47
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=157.26 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMR---DQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.+||++|++|++.|+.++|..+|++|. ..|+.||..||+++|.+|++.|++++|.++|++|...|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~----------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL----------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------
Confidence 478888888888888888888887765 357888888888888888888888888888888888886
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHH
Q 042503 275 VDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRG-ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (477)
.||+.+||++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+
T Consensus 197 ---------------------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~v 251 (1134)
T 3spa_A 197 ---------------------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TV 251 (1134)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HH
T ss_pred ---------------------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HH
Confidence 56777788888888888875 68899999999999999999999888655443 44
Q ss_pred HHHHHHhhhccCCCCC------hHHHHHHHHHHHhcC
Q 042503 354 RELFASMTGLHSIVPN------LEHYGCMVDVLGRSG 384 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 384 (477)
++..+++. .++.|+ ..+...|.+.|.+.+
T Consensus 252 L~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence 44444453 233333 445555667777655
No 48
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=158.91 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=114.4
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCC-------CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMR-------NPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAP 105 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 105 (477)
-..+|+++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 39999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCc-hhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 106 LLKACLGVGDL-RVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 106 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999986 789999999999999999999999988776665555554444433
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.8e-14 Score=123.50 Aligned_cols=198 Identities=13% Similarity=-0.047 Sum_probs=135.9
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 333344444444444444444433 44444555555555556666666555555432 2445566667777777777
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 316 ELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
++|..+++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|...++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888777776622233 55677778888888889999998888887432 4457778888888999999999999998
Q ss_pred hc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 395 SM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 395 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++ .. +.+...+..+...+...|++++|.+.++++.+..|.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88 33 345677888888899999999999999999999998766543
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=4e-15 Score=134.20 Aligned_cols=228 Identities=13% Similarity=0.068 Sum_probs=198.0
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC-hHHHHHHhccCCC---CCceeHHHHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI-LDTARNVFKEIPR---KNVVSWNAMISG 308 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 308 (477)
..+..+...+...|+++.|...++++.+.. |.+..+|..+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446667777888999999999999999998 8999999999999999997 9999999999875 456789999999
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh-cCCHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR-SGCVR 387 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 387 (477)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999986 6688999999999999999999999999998533 5577889999999999 66657
Q ss_pred HH-----HHHHHhc-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC--------
Q 042503 388 EA-----YDLIRSM-SIRP-NAAIWGSLLSSCRTHG--HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 388 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
+| +..|++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4778777 4455 4678888888888888 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-HhCC
Q 042503 451 -RWDDAETLRMWM-RENN 466 (477)
Q Consensus 451 -~~~~A~~~~~~~-~~~~ 466 (477)
..++|+++++++ ++.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258999999998 6543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=3e-15 Score=127.52 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=158.7
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
......+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34455667788889999999999999998765 356778888999999999999999999999875 56788899999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~ 419 (477)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. +.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998532 557788999999999999999999999998 33 446788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|...++++++..|.++.++..++.+|.+.|++++|...++++++..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998754
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=5.2e-15 Score=123.37 Aligned_cols=204 Identities=14% Similarity=0.021 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++.+.. |.+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 3445555556666666666666666655442 2234444555555555555555555555555555 555555555555
Q ss_pred HHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
++...+.. ... .....|++++|+..+++..+.. |.+...+..+..++...|++++|+..
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHH
Confidence 55554000 000 0011144555555555554443 33344444455555555555555555
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|+++.+ .. .+...+..+..+|...|++++|+..|++. ...| +...+..+...+...|++++|...+++
T Consensus 141 ~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 141 LKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555542 22 34444455555555555555555555554 2222 334444455555555555555555444
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=3.6e-13 Score=129.58 Aligned_cols=413 Identities=6% Similarity=-0.037 Sum_probs=242.0
Q ss_pred hhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC---CchHHHHHH
Q 042503 16 THLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGP---SEEPVKLFA 89 (477)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 89 (477)
.+-...++..+..+ +-|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.++ ++.+.++|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34444556666665 46899999999999999999999999998876 345678888888888888 999999999
Q ss_pred HHHhCC-CCCCcccHHHHHHHhhccCCc--------hhHHHHHHHHHH-hcc-cCc-chHHHHHHHHHH---------hc
Q 042503 90 LLKNLG-IWPDEYTFAPLLKACLGVGDL--------RVGQCVHGEIIR-SGF-ERF-GSIRIGVVELYT---------SC 148 (477)
Q Consensus 90 ~~~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~ 148 (477)
+..... .+|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998853 137888887777665555543 334467777665 355 554 467777776544 34
Q ss_pred CChhhHHHHhcccCC-Cc---hHHhHH---HHHHH----------HhcCChHHHHHHHHhcC-------C--CC------
Q 042503 149 GQMDDGMKVFDEMSH-RD---VIVRNL---MIHGF----------CKKGDVDKGLYLFREMR-------E--RS------ 196 (477)
Q Consensus 149 g~~~~A~~~~~~~~~-~~---~~~~~~---l~~~~----------~~~~~~~~a~~~~~~~~-------~--~~------ 196 (477)
++++.+..+|++... |. ..+|.. +...+ -...+++.|...+.++. . |.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 567888899988876 21 122321 11111 00112233333333210 0 00
Q ss_pred --------------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH-HH
Q 042503 197 --------------VVSWNLMISSLGKSG-------RDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ-WI 254 (477)
Q Consensus 197 --------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 254 (477)
...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 012333333222221 122344556665554 2345556666666666666666675 77
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------------CC------------ceeHHHHHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------------KN------------VVSWNAMISGL 309 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~ 309 (477)
++.+.... |.+...|...+....+.|+++.|..+|+++.. |+ ...|...+...
T Consensus 367 l~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 367 LKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77776654 55666666666777777777777777766543 21 12455555555
Q ss_pred HhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc-cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 310 AFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCAH-AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHH
Confidence 5666667777777776654 2 1122222222222222 23466777777766643 2344455556666666667777
Q ss_pred HHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 388 EAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 388 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|++
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 777777766 2222 22456666666666677777777777777766654
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=3.7e-14 Score=123.12 Aligned_cols=224 Identities=8% Similarity=-0.084 Sum_probs=142.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVG 271 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (477)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...++++.+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44556666666777777777777777666522 23334444444444 444444444444444332
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH- 346 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~- 346 (477)
++..+..+...+.. .+++++|...|++..+.+ +...+..+...+..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34445555566666 677777777777766654 55666666666666
Q ss_pred ---cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----c
Q 042503 347 ---AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----H 415 (477)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 415 (477)
.+++++|...|++..+ .+ +...+..+...|.. .+++++|+..|++.-...+...+..+...|.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 7777777777777763 22 45566666666666 77777777777776112345666777777777 7
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENN 466 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (477)
+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777777765 5677777777777 777777777777776655
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.9e-15 Score=139.78 Aligned_cols=264 Identities=12% Similarity=0.017 Sum_probs=152.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--CC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRE--RS-V----VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC 242 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 242 (477)
..+...+...|++++|+..|+++.+ |+ . ..|..+...+...|++++|...+++.....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------
Confidence 3444555566666666666655543 21 1 245555555666666666666665544320
Q ss_pred hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcC
Q 042503 243 ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNG 313 (477)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 313 (477)
...+..+....++..+...|...|++++|...+++..+ . ...++..+...+...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 00010133334444455555555555555555544332 0 1224555555566666
Q ss_pred C-----------------chHHHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--
Q 042503 314 R-----------------GELGVELYEQMIAK----GV-SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-- 369 (477)
Q Consensus 314 ~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 369 (477)
+ +++|...+++..+. +. +....++..+..++...|++++|...+++..+...-.++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 66666666554431 11 112345666777777778888888777776532111111
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----
Q 042503 370 --LEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---- 435 (477)
Q Consensus 370 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---- 435 (477)
...+..+...|...|++++|.+.+++. .. ..+ ..++..+...+...|++++|...++++++..+..
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 226667777788888888888887776 11 111 3567777788888888888888888887664322
Q ss_pred --CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 436 --SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 436 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++..++.+|.+.|++++|...+++..+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34777888888888888888888887755
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=1.8e-14 Score=116.94 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=144.4
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++..|..+...+...|++++|+..|++..+.. |-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888889999999999999999998875 667888999999999999999999999988743 245667778888
Q ss_pred HHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
..+...++++.|...+++. .. +.+...+..++..+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999888 33 445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
.+.+++.++..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998764
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=1e-14 Score=134.44 Aligned_cols=291 Identities=13% Similarity=0.041 Sum_probs=160.6
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCC--CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RS-----VVSWNLMISSLGKSGRDSEALRLFHEMRDQ----AFEL-DE 232 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 232 (477)
....+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555666777777888888888777654 22 235667777777778888888777775432 1111 13
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCC----ccchhHHHHHHHHHHHhcCC--------------------hHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGL----YRKVVSVGNALVDFYCKCGI--------------------LDTAR 288 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 288 (477)
..+..+...+...|+++.|...+..+.+... .+....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455566666777777777777766654421 01123355666666666666 66666
Q ss_pred HHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccccHHHHH
Q 042503 289 NVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN----KATFVGVLTCCAHAGLVEKAR 354 (477)
Q Consensus 289 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~ 354 (477)
..+++..+ ++ ..++..+...+...|++++|...+++..+... .++ ..++..+..++...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 65554432 11 12455555566666666666666666554210 111 124555555666666666666
Q ss_pred HHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHHcCChHHHH
Q 042503 355 ELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~ 422 (477)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655421110111 334555566666666666666666555 11111 334555566666666666666
Q ss_pred HHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHH
Q 042503 423 HAVKELINLEPWNS------GNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 423 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A 455 (477)
..++++++..+... .++..++.++...|+...+
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 66666666665542 2344455555555554443
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=9.5e-15 Score=130.88 Aligned_cols=262 Identities=15% Similarity=0.012 Sum_probs=169.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCcccchHHHHHHHHHh----CCccchhHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELD----EATVVAVLPICARLGAVDIGQWIHSYAESS----GLYRKVVSVGNALV 275 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~ 275 (477)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++.+... +..+....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444455555555555544432 111 123334444444555555555544443322 11133345556666
Q ss_pred HHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCC--------------------chHHHHHHHHHH
Q 042503 276 DFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGR--------------------GELGVELYEQMI 326 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~ 326 (477)
..+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 667777777777766665542 11 2256666677777777 777777777665
Q ss_pred Hc----CCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 327 AK----GVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 327 ~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
.. +.. .....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 12346777888888999999999999887642111112 236778888999999999999999887
Q ss_pred C---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 397 S---IRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 397 ~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
. ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 1222 4577888899999999999999999998765432 3478899999999999999999999988
Q ss_pred hCC
Q 042503 464 ENN 466 (477)
Q Consensus 464 ~~~ 466 (477)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 753
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=3.6e-14 Score=119.18 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...++++.+. . |.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~--~~~~~~~~~l~~~ 51 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------D--PKNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------C--ccchHHHHHHHHH
Confidence 34555555666666666666666655544 2 3334444555555
Q ss_pred HHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHH
Q 042503 278 YCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 352 (477)
+...|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..| +...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554432 2344566677777777 88888888888877632223 35677788888888899999
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R-PNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
|...++++.+.. +.+...+..+...+...|++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.
T Consensus 132 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999998887432 445778888888899999999999999887 33 3 466777777788888999999999999999
Q ss_pred hcCCCCCchHHHH
Q 042503 430 NLEPWNSGNYVLL 442 (477)
Q Consensus 430 ~~~p~~~~~~~~l 442 (477)
+..|.++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8999877665443
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.1e-13 Score=120.04 Aligned_cols=224 Identities=8% Similarity=-0.117 Sum_probs=175.5
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRER-SVVSWNLMISSLGK----SGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
+..++..+...+...|++++|.+.|++..++ +..++..+...+.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788889999999999999999998774 56688889999999 999999999999998876 667777777
Q ss_pred HHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHh----
Q 042503 240 PICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAF---- 311 (477)
Q Consensus 240 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---- 311 (477)
..+.. .+++++|...++++.+.+ ++..+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCCc
Confidence 77777 777777777777776654 22334445555555
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----c
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----S 383 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (477)
.+++++|...+++..+.+ +...+..+...+.. .+++++|...|++..+ . .+...+..+...|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 677777888887777765 45566677777776 7888899888888874 2 345677788888888 8
Q ss_pred CCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 042503 384 GCVREAYDLIRSM-SIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 384 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 434 (477)
+++++|+..|++. ...| ...+..+...|.. .+++++|.+.++++.+.+|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8999999998887 3333 6778888888888 89999999999999998875
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=138.58 Aligned_cols=287 Identities=11% Similarity=-0.010 Sum_probs=208.6
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-----hHHhHHHHHHHHhcCChHHHHHHHHhcCC-----C----C
Q 042503 133 RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-----VIVRNLMIHGFCKKGDVDKGLYLFREMRE-----R----S 196 (477)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~ 196 (477)
.....+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566777888899999999999988765 32 34677888889999999999999887643 1 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhccCc--------------------ccch
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFE-LD----EATVVAVLPICARLGA--------------------VDIG 251 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a 251 (477)
..++..+...+...|++++|...+++....... ++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 346778888899999999999999988765211 22 3366777788888899 8888
Q ss_pred HHHHHHHHHh----CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHH
Q 042503 252 QWIHSYAESS----GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 252 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 318 (477)
...+..+.+. +..+....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888877654 21144455678888999999999999998887764 22 13677888889999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 042503 319 VELYEQMIAKGVS-PN----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 319 ~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 389 (477)
...+++....... ++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999888763211 11 456778888899999999999999887642211122 45677888889999999999
Q ss_pred HHHHHhc-------CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 390 YDLIRSM-------SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 390 ~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
.+.+++. +..+ ...++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9988886 1111 1245555666666666554
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=2.7e-14 Score=124.08 Aligned_cols=236 Identities=7% Similarity=-0.147 Sum_probs=158.0
Q ss_pred CChHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 180 GDVDKGLYLFREMRER-------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 180 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
|++++|++.|+++.+. +..++..+...+...|++++|...|+++.... +.+...+..+...+...|+++.|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555444431 23456666666667777777777777666653 335566666666777777777777
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
..++.+.+.. |.+..++..+...|...|++++|...|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 7777777665 56667777778888888888888888877654 433334444455566789999999998887764
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI 404 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 404 (477)
+++...+. ++..+...++.++|...+++..+ . .| +...+..+...|.+.|++++|...|+++ ...|+.
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADAT-D--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-S--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc-c--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 44444443 66667778888899999988773 2 22 1567888899999999999999999998 666643
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 042503 405 WGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~ 425 (477)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355677788888887766
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=7.4e-15 Score=137.65 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=153.1
Q ss_pred cchhHHHHHHHHHHHhcCCh-HHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGIL-DTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 340 (477)
+.+...+..+...+...|++ ++|+..|++..+ .+...|..+..+|...|++++|...|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34444555555555555555 555555555432 23456777777788888888888888888776 4667888888
Q ss_pred HHHhhcc---------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHhc-CCCC--
Q 042503 341 LTCCAHA---------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS--------GCVREAYDLIRSM-SIRP-- 400 (477)
Q Consensus 341 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 400 (477)
..++... |++++|+..|+++.+.. +.+...|..+..+|... |++++|++.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 8888888 99999999999988532 55678888899999888 9999999999998 4455
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 401 --NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 401 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
+...|..+..+|...|++++|.+.|+++++.+|.++.++..++.++...|++++|.+.+.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999999999999999999999999987543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=3.4e-14 Score=131.29 Aligned_cols=271 Identities=13% Similarity=0.030 Sum_probs=183.7
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-h----HHhHHHHHHHHhcCChHHHHHHHHhcCC---------CChh
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-V----IVRNLMIHGFCKKGDVDKGLYLFREMRE---------RSVV 198 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~ 198 (477)
...+..+...+...|++++|...|++..+ |+ . ..+..+...|...|++++|.+.|++..+ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44555677889999999999999998865 32 2 4678889999999999999999988754 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHhhccCc----------ccchHHHHHHHHHhCC
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQA----F-ELDEATVVAVLPICARLGA----------VDIGQWIHSYAESSGL 263 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 263 (477)
++..+...+...|++++|...+++..... - +.....+..+...+...|+ .+.+...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 67888889999999999999998876531 0 1112233444444444555 0000000
Q ss_pred ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC
Q 042503 264 YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN 333 (477)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~ 333 (477)
+++|...+++..+ . ....+..+...+...|++++|...+++..+... .++
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 4444444333221 1 123556666777777777777777777665310 011
Q ss_pred ----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC
Q 042503 334 ----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN 401 (477)
Q Consensus 334 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~ 401 (477)
...+..+..++...|++++|...+++..+...-.. ...++..+...|...|++++|...+++. .. .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888888999999888887764221111 1456778888899999999999998887 11 112
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 402 ----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 402 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
..++..+...|...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 347788889999999999999999999887753
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=4.5e-12 Score=122.00 Aligned_cols=400 Identities=9% Similarity=-0.009 Sum_probs=278.7
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC---chhHHHHHHHHHHhcc-cCcchHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD---LRVGQCVHGEIIRSGF-ERFGSIR 138 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 138 (477)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|+..+...+ .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 57889999999999999999999999999986 45566778888888888888 9999999999988642 3678888
Q ss_pred HHHHHHHHhcCCh--------hhHHHHhcccC------CC-chHHhHHHHHHHH---------hcCChHHHHHHHHhcCC
Q 042503 139 IGVVELYTSCGQM--------DDGMKVFDEMS------HR-DVIVRNLMIHGFC---------KKGDVDKGLYLFREMRE 194 (477)
Q Consensus 139 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 194 (477)
...+....+.++. +.+.++|+... ++ +...|...+.... ..++++.+.++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888776666654 33446666532 22 3457777765443 34567889999999876
Q ss_pred -CCh---hhH---HHHHHHH----------HhcCChhHHHHHHHHHHHc--CC----C-----------C-----C---H
Q 042503 195 -RSV---VSW---NLMISSL----------GKSGRDSEALRLFHEMRDQ--AF----E-----------L-----D---E 232 (477)
Q Consensus 195 -~~~---~~~---~~l~~~~----------~~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~---~ 232 (477)
|.. .+| ..+.... -...+++.|...+.++... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 321 122 2222111 0012234444555443221 11 1 1 0 1
Q ss_pred HHHHHHHHHhhccC-------cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH-HHhccCCC--C-Ccee
Q 042503 233 ATVVAVLPICARLG-------AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR-NVFKEIPR--K-NVVS 301 (477)
Q Consensus 233 ~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~--~-~~~~ 301 (477)
..|...+.---..+ ..+.+..++++++... |..+.+|...+..+...|+.++|. .+|++... | +...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333333222211 1234567788888887 788999999999999999999996 99988765 3 4445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGV---------SPN------------KATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
|-..+...-+.|++++|..+|+++..... .|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777888889999999999999886410 131 335777777778889999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q 042503 361 TGLHSIVPNLEHYGCMVDVLGRS-GCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW--- 434 (477)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 434 (477)
.+..+ .+....|...+..-.+. ++.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 85311 12234444333333344 4599999999998 33445667778888888899999999999999998873
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999998874
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=7.5e-14 Score=127.60 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=14.2
Q ss_pred hccCCchhHHHHHHHHHHh
Q 042503 111 LGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~ 129 (477)
.+.+++++|..+++++.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~ 41 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQE 41 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHH
Confidence 5677888888888877654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.9e-12 Score=114.30 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-------ccCcc-------cchHHHHHHHHH-hCCccchhHHHHHHHHHH
Q 042503 214 SEALRLFHEMRDQAFELDEATVVAVLPICA-------RLGAV-------DIGQWIHSYAES-SGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 278 (477)
++|...|++..... +-+...|..++..+. ..|++ ++|..+++++.+ .. |.+..+|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 45666666666542 334455555554443 24665 677777777777 34 66777778888888
Q ss_pred HhcCChHHHHHHhccCCC--C-Cce-eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccccHHHH
Q 042503 279 CKCGILDTARNVFKEIPR--K-NVV-SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA-HAGLVEKA 353 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 353 (477)
.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887665 3 233 67777888888888888888888888764 444445544333322 36888888
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S---IRP--NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887433 446677888888888888888888888887 2 244 356788888888888888888888888
Q ss_pred HHhcCCCCCch
Q 042503 428 LINLEPWNSGN 438 (477)
Q Consensus 428 ~~~~~p~~~~~ 438 (477)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 88888876544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=6.3e-14 Score=128.13 Aligned_cols=196 Identities=9% Similarity=0.000 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC---
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KN-----VVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN--- 333 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~--- 333 (477)
..++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|...+++..+... .++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 34445555555555655555555554432 11 13456666677777777777777776654310 011
Q ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-----CCC-
Q 042503 334 -KATFVGVLTCCAHAGLVEKARELFASMTGL---HSI-VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-----RPN- 401 (477)
Q Consensus 334 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~- 401 (477)
..++..+..+|...|++++|...+++..+. .+. +....++..+...|.+.|++++|...+++. .. .|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 235666777777777777777777776531 122 223456677777777778877777777766 11 111
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 AAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..+...+...|+ +++|..++++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1234556666667777 66666666655 22233455677778888888888888888877765
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=6.3e-14 Score=125.51 Aligned_cols=265 Identities=14% Similarity=0.062 Sum_probs=158.6
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC--Cc-----hHHhHHHHHHHHhcCChHHHHHHHHhcCC-----C----ChhhHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH--RD-----VIVRNLMIHGFCKKGDVDKGLYLFREMRE-----R----SVVSWNL 202 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~ 202 (477)
......+...|++++|...|++..+ |+ ...+..+...+...|++++|.+.+++... + ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555566666666666665543 11 23344455555555555555555544332 0 1223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG 282 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (477)
+...+...|++++|...+++..+.... .+..+....++..+...+...|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRE-------------------------------LNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH-------------------------------hcCchHHHHHHHHHHHHHHHcC
Confidence 444555555555555555544332100 0100112234455566666666
Q ss_pred C--------------------hHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHc----C
Q 042503 283 I--------------------LDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAK----G 329 (477)
Q Consensus 283 ~--------------------~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~ 329 (477)
+ +++|...+++..+ ++ ...+..+...+...|++++|...+++..+. +
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 6 6666665554432 11 235667777788888888888888877653 1
Q ss_pred CC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CC
Q 042503 330 VS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RP 400 (477)
Q Consensus 330 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p 400 (477)
.+ ....++..+..++...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++. .. .+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 01 11336777888889999999999999887642211122 456778888999999999999999887 11 11
Q ss_pred C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 401 N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 401 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+ ..++..+...+...|++++|...+++++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2 347788899999999999999999999987754
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.2e-13 Score=110.47 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
.+..+|..+...|...|++++|+..|++..+ .++.+|..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556777788888888888888888877654 355677888888889999999999999988875 556777888888
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 420 (477)
.+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +...+..++.++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988743 2556778888999999999999999999988 4444 56889999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 042503 421 AEHAVKELINLEPWNS 436 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~ 436 (477)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998653
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=2.7e-13 Score=109.92 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 344444444555555555555555554421 1233445555555555566666666665555 223345566666677
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+...|++++|...++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777777777777777777777777777777776543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1e-12 Score=115.97 Aligned_cols=212 Identities=8% Similarity=-0.018 Sum_probs=173.6
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHh-------cCCh-------HHHHHHhccCCC---C-CceeHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-------CGIL-------DTARNVFKEIPR---K-NVVSWNAMISGLA 310 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~ 310 (477)
++|...|+++.... |.++.+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56778888888877 8889999988888764 5886 899999998765 3 4457899999999
Q ss_pred hcCCchHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPN-KA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVR 387 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 387 (477)
+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999985 443 33 78899999999999999999999998422 344555554443322 379999
Q ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 388 EAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINL---EPW-NSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 388 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+|.++|++. .. +.+...|..++..+.+.|++++|..+|+++++. .|. +...|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998 33 335788999999999999999999999999996 443 566899999999999999999999999
Q ss_pred HHhCC
Q 042503 462 MRENN 466 (477)
Q Consensus 462 ~~~~~ 466 (477)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=4.2e-13 Score=130.68 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=141.2
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 299 VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
..+|+.+..++.+.|++++|+..|++.++.. +-+...+..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3467778888888888888888888888875 5567888889999999999999999999888532 445778999999
Q ss_pred HHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 042503 379 VLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
+|.+.|++++|++.|++. .+.| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999988 5555 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 042503 457 TLRMWMRE 464 (477)
Q Consensus 457 ~~~~~~~~ 464 (477)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988865
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=9.2e-14 Score=123.02 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=113.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHh------CCcc
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQ-------AFELDEATVVAVLPICARLGAVDIGQWIHSYAESS------GLYR 265 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 265 (477)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|+++.|...++.+... +..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555566666666666666666665542 11112233444444444555555555544444433 1113
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc------CC-CCCHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK------GV-SPNKATFV 338 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~ 338 (477)
....++..+...|...|++++|...|+ ++.+. +. +.....+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHHHH
Confidence 334444455555555555555555444 43332 11 11233455
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcc-----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---------CCCC-
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLH-----S-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S---------IRPN- 401 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~- 401 (477)
.+..++...|++++|...++++.+.. + .+....++..+...|...|++++|.+.++++ . ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 55556666666666666666554310 1 1112334555666666666666666666555 1 0111
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 ------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233344455666666777777777777777788888888888888888888877765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=8.6e-13 Score=120.29 Aligned_cols=302 Identities=9% Similarity=0.008 Sum_probs=149.9
Q ss_pred ccCcchHHHHHHHHH--HhcCChhhHHHHhcccCC--------CchHHhHHHHHH--HHhcCChHHHH---------HHH
Q 042503 131 FERFGSIRIGVVELY--TSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHG--FCKKGDVDKGL---------YLF 189 (477)
Q Consensus 131 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 189 (477)
..|+..+-..|-..| ...+++++|.++++++.+ .+...|..++.. ....+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345556666666676 778888888888776532 233333333322 11112222222 333
Q ss_pred HhcCC---CCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCcccchHHHHH
Q 042503 190 REMRE---RSV-----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELD----EATVVAVLPICARLGAVDIGQWIHS 256 (477)
Q Consensus 190 ~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (477)
+.+.. +.. ..+......+...|++++|+..|++...... .++ ...+..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33321 100 1222334455566777777777766654311 111 1233344444444555555544444
Q ss_pred HHHHhCC-----ccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc---
Q 042503 257 YAESSGL-----YRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK--- 328 (477)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 328 (477)
++.+... .+... .+++.+..++...|++++|...+++..+.
T Consensus 166 ~al~~~~~~~~~~~~~~-------------------------------~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTI-------------------------------QSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHTSTTCHHHHH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHH-------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4433210 00112 23455555566666666666666555442
Q ss_pred -CCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CC-
Q 042503 329 -GVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGL---HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SI- 398 (477)
Q Consensus 329 -~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~- 398 (477)
+.+ ....++..+..++...|++++|...+++..+. .+.+....++..+...|.+.|++++|...+++. ..
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 101 11234555666666666666666666666520 022223455666666666777777776666665 11
Q ss_pred -CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 399 -RPN-AAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 399 -~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.|. ...+..+...+...++ +.+|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 2234444444555555 55555555541 11122344556677777777777777777766654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=2.4e-12 Score=117.27 Aligned_cols=309 Identities=8% Similarity=-0.013 Sum_probs=199.9
Q ss_pred CCCCcccHHHHHHHh--hccCCchhHHHHHHHHHHhccc--C--cchHHHHHHHH--HHhcCChhhHH---------HHh
Q 042503 96 IWPDEYTFAPLLKAC--LGVGDLRVGQCVHGEIIRSGFE--R--FGSIRIGVVEL--YTSCGQMDDGM---------KVF 158 (477)
Q Consensus 96 ~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~--~~~~g~~~~A~---------~~~ 158 (477)
+.|+...-+.+-..+ +..+++++|..+++++.+.... . +...|-.++.. ..-.+.+.... ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666666666777 8899999999999998774322 2 23333444432 11123333333 444
Q ss_pred cccCC---Cch--H---HhHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHH
Q 042503 159 DEMSH---RDV--I---VRNLMIHGFCKKGDVDKGLYLFREMRE-----RS----VVSWNLMISSLGKSGRDSEALRLFH 221 (477)
Q Consensus 159 ~~~~~---~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (477)
+.+.. +.. . .+......+...|++++|+..|++..+ ++ ..++..+...+...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44432 111 1 223345566789999999999998764 22 3478889999999999999999999
Q ss_pred HHHHcCC-----CC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 222 EMRDQAF-----EL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 222 ~m~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
+..+... .+ ...++..+..++...|+++.|...+.++.+......+..
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-------------------------- 219 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-------------------------- 219 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------------
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH--------------------------
Confidence 8775311 11 234566777778888888888888877665421000000
Q ss_pred CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC---CC
Q 042503 296 RKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI---VP 368 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 368 (477)
....++..+..++...|++++|...+++..+. +.+....++..+..++.+.|++++|...+++..+...- +.
T Consensus 220 -~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 220 -FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 00123455566666667777777776666551 22334667778888888888999988888887643221 22
Q ss_pred ChHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 369 NLEHYGCMVDVLGRSGC---VREAYDLIRSMSIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
....+..+...|...|+ +.+|+..+++.+..|+. ..+..++..|...|++++|...++++++.
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23345666667777787 88888888887544433 46677888899999999999999988754
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=2.4e-11 Score=110.47 Aligned_cols=262 Identities=10% Similarity=-0.047 Sum_probs=131.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C--Ch----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 042503 172 MIHGFCKKGDVDKGLYLFREMRE--R--SV----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELDEA----TVVAV 238 (477)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~----~~~~l 238 (477)
....+...|++++|...+++... | +. .+++.+...+...|++++|...+++...... .++.. ++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455567777777777666432 1 11 1345555666677777777777777654321 11211 13344
Q ss_pred HHHhhccCcccchHHHHHHHHHhC----Cc--cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C------CceeHHH
Q 042503 239 LPICARLGAVDIGQWIHSYAESSG----LY--RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K------NVVSWNA 304 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~ 304 (477)
...+...|+++.|...++.+.+.. .. +.....+..+...+...|++++|...+++... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 455566666666666666655432 10 11233444555666666666666666655432 1 0123444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhhccccHHHHHHHHHHhhhccCCCC--ChHHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPN--KATFV----GVLTCCAHAGLVEKARELFASMTGLHSIVP--NLEHYGCM 376 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 376 (477)
+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++........+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55555666666666666666554311111 11111 112234456666666666666552110000 01133445
Q ss_pred HHHHHhcCCHHHHHHHHHhc-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 377 VDVLGRSGCVREAYDLIRSM-------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++++...+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 55566666666666666554 111111 2444445555666666666666666665554
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=1.8e-12 Score=109.03 Aligned_cols=205 Identities=11% Similarity=-0.014 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHHHHH
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWNAMI 306 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 306 (477)
.|+..+......+...|++++|...++.+.+... +++...+..+..++...|++++|+..|++..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3556677777777888888888888888887762 256666666777777888888887777776542 335667777
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC---ChHHHHHH
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNK-------ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP---NLEHYGCM 376 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 376 (477)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .| +...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 77777788888888887777754 3344 44666667777777777887777777632 23 34566666
Q ss_pred HHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
..+|...|+. .++++ . ...+...+.... ....+.+++|...++++++++|.++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666554432 22332 1 122233333332 23455678899999999999998887777666553
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=7.6e-12 Score=101.27 Aligned_cols=171 Identities=15% Similarity=-0.001 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455667888899999999999999999876 355678888899999999999999999999875 667888999999
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 420 (477)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999843 3567788899999999999999999999998 334467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchH
Q 042503 421 AEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~ 439 (477)
|...++++++..|.++...
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999988766543
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=121.38 Aligned_cols=209 Identities=12% Similarity=0.007 Sum_probs=164.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc-cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHh
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV-DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVF 291 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (477)
+++++..++...... +.+...+..+...+...|++ ++|...++++.+.. |.+..++..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455556666544432 34566677777777778888 88888888887776 777788888888888888888888888
Q ss_pred ccCCC--CCceeHHHHHHHHHhc---------CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHH
Q 042503 292 KEIPR--KNVVSWNAMISGLAFN---------GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEK 352 (477)
Q Consensus 292 ~~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 352 (477)
++..+ |+...+..+...+... |++++|+..+++..+.. +.+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87765 5566777788888888 99999999999998875 66788888999999888 99999
Q ss_pred HHHHHHHhhhccCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIV---PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 353 a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|+..|++..+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998532 3 47788999999999999999999999988 4444 456788888888888888888876543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=3.5e-12 Score=107.28 Aligned_cols=189 Identities=8% Similarity=-0.049 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTC 343 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 343 (477)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 34444555555555555555555554432 233344444455555555555555555555443 3334445555555
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNL-------EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSC 412 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 412 (477)
+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 555555555555555554321 1222 23444444455555555555555554 33443 23444444444
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
... +...++++..+.+.++..+... .....|.+++|...+++.++..
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 322 2233344444443332222221 2223344599999999998764
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=115.23 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhC-------CCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhc-------cc
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNL-------GIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSG-------FE 132 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~ 132 (477)
++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++.+... .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555555442 112223344555555555566666665555555431 11
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHhcccCC-----------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 042503 133 RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE------- 194 (477)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 194 (477)
....++..+...|...|++++|...+++..+ .....+..+...+...|++++|.+.|++..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1234455555555556666666555554432 1122344555555556666666655555432
Q ss_pred C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 195 R----SVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 195 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
+ ...++..+...+...|++++|...++++..
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 123566677777777788877777777664
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=1.6e-10 Score=98.84 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 304 AMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444555555555444433321 1233344444444444555555555554444
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=2.6e-10 Score=103.62 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH--
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFEL----DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN-- 272 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 272 (477)
.+..+...+...|++++|...+++........ ....+..+...+...|+++.|...++........+.....+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 34445566666666666666666655432111 122344444555555666666665555544311011101111
Q ss_pred ---HHHHHHHhcCChHHHHHHhccCCCCCce-------eHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 273 ---ALVDFYCKCGILDTARNVFKEIPRKNVV-------SWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 273 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
..+..+...|++++|...+++...+... .+..+...+...|++++|...+++.
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223355666666666666655542210 1233344444455555555554444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=3.7e-12 Score=110.86 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=130.0
Q ss_pred ccCcccchHHHHHHHHHh-------CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CceeHHHH
Q 042503 244 RLGAVDIGQWIHSYAESS-------GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K----NVVSWNAM 305 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l 305 (477)
..|+++.|...++++.+. .. +....++..+...|...|++++|...++++.+ + ...++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 344455555544444432 11 44455566666667777777776666665442 1 12356666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHc------C-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc----c-C-CCCChHH
Q 042503 306 ISGLAFNGRGELGVELYEQMIAK------G-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGL----H-S-IVPNLEH 372 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~-~~~~~~~ 372 (477)
...+...|++++|...+++.... . .+....++..+..++...|++++|...++++.+. . + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777777776654 1 1223556777777888888888888888877642 0 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-C---------CCCCH-HHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-S---------IRPNA-AIWGSLLSSCRTHGH------VELAEHAVKELINLEPWN 435 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 435 (477)
+..+...|...|++++|...+++. . ..+.. ..+..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 777788888888888888888776 1 12222 233333333333222 222333333322233445
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+.++..++.+|...|++++|..++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667888999999999999999999888754
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=1.5e-11 Score=119.92 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=142.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|.+..+++.+...|.+.|++++|+..|++..+ .+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77788888899999999999999999888765 345778889999999999999999999999875 55788999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 419 (477)
.++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++. ...|+ ...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988532 456788999999999999999999999998 55554 578999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 042503 420 LAEHAVKELINLE 432 (477)
Q Consensus 420 ~a~~~~~~~~~~~ 432 (477)
+|.+.+++++++.
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=7.5e-11 Score=103.07 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC-C---
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSP-N--- 333 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~-~--- 333 (477)
..++..+..+|...|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 34455566666666666666655554432 11 23566667777775 77777777777766531100 1
Q ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH---
Q 042503 334 -KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL-----EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA--- 403 (477)
Q Consensus 334 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 403 (477)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 3456677777778888888888888777422111221 14566677777788888888888777 4455432
Q ss_pred ---HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCC
Q 042503 404 ---IWGSLLSSCR--THGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 404 ---~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+..++.++. ..+++++|+..|+++..++|...
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2334444443 34567777777777766666543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=9.4e-11 Score=102.45 Aligned_cols=172 Identities=10% Similarity=-0.010 Sum_probs=128.1
Q ss_pred ChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccccHHHHHHHH
Q 042503 283 ILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GVSPN-KATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
++++|...|++. +..|...|++++|...|.+..+. |-+++ ..+|+.+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766553 55677788888888888877653 31222 457888888888889999998888
Q ss_pred HHhhhccCCCCC----hHHHHHHHHHHHhc-CCHHHHHHHHHhc-CCCC---C----HHHHHHHHHHHHHcCChHHHHHH
Q 042503 358 ASMTGLHSIVPN----LEHYGCMVDVLGRS-GCVREAYDLIRSM-SIRP---N----AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 358 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
++..+...-..+ ..+++.+...|... |++++|+..|++. .+.| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 887642211111 34678888888886 9999999998887 2211 1 35678888899999999999999
Q ss_pred HHHHHhcCCCCCc-------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 425 VKELINLEPWNSG-------NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 425 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++++++..|.++. .+..++.++...|++++|...+++.++.
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999998877654 4677888889999999999999887764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=8.9e-11 Score=100.87 Aligned_cols=188 Identities=12% Similarity=-0.023 Sum_probs=131.5
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-C---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCCHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-N---VVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPNKAT 336 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 336 (477)
+.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|...|++..+... +.....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45556666777777788888888888877765 2 2 34566777788888888888888888887631 122455
Q ss_pred HHHHHHHhhc--------cccHHHHHHHHHHhhhccCCCCChHHH-----------------HHHHHHHHhcCCHHHHHH
Q 042503 337 FVGVLTCCAH--------AGLVEKARELFASMTGLHSIVPNLEHY-----------------GCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 337 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~ 391 (477)
+..+..++.. .|++++|+..|+++.+.. +.+.... ..+...|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6667777777 888888888888887533 2222222 456778888999999999
Q ss_pred HHHhc-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCch
Q 042503 392 LIRSM-SIRPN----AAIWGSLLSSCRTH----------GHVELAEHAVKELINLEPWNSG---NYVLLSNIYAEGGRWD 453 (477)
Q Consensus 392 ~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 453 (477)
.|+++ ...|+ ...+..++.+|... |++++|...++++++..|+++. +...+..++.+.|+++
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99887 33343 45677777888765 8889999999999999988754 3444555555555444
Q ss_pred H
Q 042503 454 D 454 (477)
Q Consensus 454 ~ 454 (477)
+
T Consensus 250 ~ 250 (261)
T 3qky_A 250 G 250 (261)
T ss_dssp T
T ss_pred h
Confidence 4
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=3.4e-10 Score=94.72 Aligned_cols=182 Identities=12% Similarity=-0.022 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--CCc----eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CCH-HHHHHHH
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPR--KNV----VSWNAMISGLAFNGRGELGVELYEQMIAKGVS-PNK-ATFVGVL 341 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~l~ 341 (477)
.+..++..+.+.|++++|+..|+++.+ |+. ..+..++.++.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344556666777777777777776653 321 34555666677777777777777777665311 111 1333334
Q ss_pred HHhhc------------------cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH
Q 042503 342 TCCAH------------------AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAA 403 (477)
Q Consensus 342 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 403 (477)
.++.. .|++++|...|+++.+.. |.+...+........ .. ... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~------~~~-----~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LK------DRL-----AK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HH------HHH-----HH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HH------HHH-----HH
Confidence 44432 345555555555555321 111111111100000 00 000 01
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
....++..+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113466778899999999999999999999876 57999999999999999999999999887543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=1.9e-10 Score=87.37 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=89.4
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++ ..+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455566666677777777776665321 334556666666777777777777777766 223345667777777788
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|++++|...++++.+..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888877778888888888888888888888877654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.1e-10 Score=100.38 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=138.5
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEH 372 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 372 (477)
.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|+..|+++.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667778888999999999999999999874 334 678888999999999999999999999864322222 456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHhc-CCCCCH-HHH-----------------HHHHHHHHHcCChHHHHHHH
Q 042503 373 YGCMVDVLGR--------SGCVREAYDLIRSM-SIRPNA-AIW-----------------GSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 373 ~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~ 425 (477)
+..+..++.. .|++++|+..|++. ...|+. ... ..++..|...|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7788888988 99999999999998 333432 222 56688899999999999999
Q ss_pred HHHHhcCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCC
Q 042503 426 KELINLEPWNS---GNYVLLSNIYAEG----------GRWDDAETLRMWMRENN 466 (477)
Q Consensus 426 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 466 (477)
+++++..|.++ ..+..++.+|... |++++|...++++++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999854 5788999999877 89999999999998753
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=1.1e-11 Score=96.23 Aligned_cols=141 Identities=9% Similarity=-0.023 Sum_probs=88.5
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+...|++++|+..+....... +.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666666654331 2223344556666777777777777777766422 345666777777777777777
Q ss_pred HHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 388 EAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEH-AVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 388 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+|+..|++. ...| +...+..++..|.+.|++++|.+ +++++++++|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766 4444 35667777777777777765544 3577777777777777777777766664
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.3e-10 Score=101.08 Aligned_cols=166 Identities=17% Similarity=0.090 Sum_probs=98.3
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHc------
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K----NVVSWNAMISGLAFNGRGELGVELYEQMIAK------ 328 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------ 328 (477)
....++..+...|...|++++|...|++..+ + ...++..+...+...|++++|..+++++.+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555554432 1 1235666677777778888888877777664
Q ss_pred C-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc------CCCC-ChHHHHHHHHHHHhcC------CHHHHHHHHH
Q 042503 329 G-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH------SIVP-NLEHYGCMVDVLGRSG------CVREAYDLIR 394 (477)
Q Consensus 329 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~ 394 (477)
+ .+....++..+..++...|++++|...++++.+.. ...+ ....+..+...+...+ .+..+...++
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1 12235577788888889999999999888876420 1122 2233333333333322 3444455555
Q ss_pred hcC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 395 SMS-IRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 395 ~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
..+ ..|+ ..++..++..|...|++++|...++++++.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 552 2233 357888999999999999999999998865
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=5.7e-10 Score=92.26 Aligned_cols=162 Identities=10% Similarity=-0.055 Sum_probs=129.3
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc----cHHHHHHHHHHhhhccCCCCChHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG----LVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
++..+..+...+...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+ .-+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHH
Confidence 45566667777777888888888888888766 55667777777777 6 89999999998874 3466777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 374 GCMVDVLGR----SGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 374 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
..|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|...|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 888888877 78999999999988 44443 7888888888888 78999999999999888 556788999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 042503 442 LSNIYAEG-G-----RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 442 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 468 (477)
|+.+|... | ++++|..++++..+.|.+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99998764 3 899999999998887743
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=3.1e-10 Score=98.74 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=135.0
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH-HH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG-CM 376 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 376 (477)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++... .|+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 34456667778888999999999999999875 667888999999999999999999999998743 34443332 33
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCc
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 452 (477)
...+.+.++.++|++.+++. .. +.+...+..+...+...|++++|...++++++.+|.+ ...+..++.+|...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33467788888899999888 33 4457889999999999999999999999999999988 78999999999999999
Q ss_pred hHHHHHHHHHHh
Q 042503 453 DDAETLRMWMRE 464 (477)
Q Consensus 453 ~~A~~~~~~~~~ 464 (477)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=3.9e-11 Score=117.53 Aligned_cols=169 Identities=9% Similarity=-0.058 Sum_probs=141.3
Q ss_pred HhcCChHHHHHHhccCC--------C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 279 CKCGILDTARNVFKEIP--------R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
...|++++|++.+++.. + .+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999988776 2 355678888889999999999999999998875 66788888999999999
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
|++++|+..|+++.+.. +.+...+..+..+|.+.|++++ ++.|++. ...| +...+..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988532 4467788899999999999999 9999888 4444 5678899999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+++++++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877665
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=6.8e-10 Score=84.27 Aligned_cols=131 Identities=15% Similarity=0.228 Sum_probs=111.1
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVL 380 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (477)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677888888999999999999998875 5577788888889999999999999999988432 45677888899999
Q ss_pred HhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 381 GRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999988 32 445778888999999999999999999999998875
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=2.3e-09 Score=91.71 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=127.8
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC-----CceeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK-----NVVSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+...+++....+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665554 333444457788888888888888888876443 3456677788899999999999999999
Q ss_pred HHcCCCC-----CHHHHHHHHHH--hhccc--cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 326 IAKGVSP-----NKATFVGVLTC--CAHAG--LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 326 ~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.+. .| +..+...+..+ ....| ++..|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 876 55 35555566555 33334 899999999998742 344333344445888999999999998865
Q ss_pred -CC----------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 397 -SI----------RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 397 -~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
.. .| ++.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 22 24 45666577767777787 88999999999999877543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.18 E-value=4e-10 Score=90.23 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH-H
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV-L 380 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 380 (477)
+......+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 4455566777777778877777766653 4566777777777888888888888887776432 233333222211 1
Q ss_pred HhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHH
Q 042503 381 GRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 456 (477)
...+...+|+..+++. ...| +...+..+..++...|++++|...++++++.+|.. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334567777777 4445 57888899999999999999999999999999865 558999999999999999999
Q ss_pred HHHHHHHh
Q 042503 457 TLRMWMRE 464 (477)
Q Consensus 457 ~~~~~~~~ 464 (477)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=3.7e-10 Score=108.78 Aligned_cols=160 Identities=12% Similarity=0.037 Sum_probs=120.6
Q ss_pred cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788889999988775 345678888888999999999999999998875 556888888999999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH---GHVELAEHAVKELINLE 432 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 432 (477)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9988532 456778888999999999999999999988 3334 567888888899998 99999999999999999
Q ss_pred CCCCchHHHHH
Q 042503 433 PWNSGNYVLLS 443 (477)
Q Consensus 433 p~~~~~~~~l~ 443 (477)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888877766
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=1.5e-10 Score=89.82 Aligned_cols=125 Identities=8% Similarity=-0.062 Sum_probs=104.1
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++. ...| +...|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 456677889999999999988732 1233456677899999999999999999998 4455 56899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHhCC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL-RMWMRENN 466 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 466 (477)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++.++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887765 58777653
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.1e-09 Score=88.56 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. |.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 446677778888888888888888775 5567788888888888888888888888887432 4556777777777765
Q ss_pred cCC--HHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 383 SGC--VREAYDLIRSMSIRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 383 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.|. .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|. ......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 543 344556665552 3333 34455566777788888999999999888885 333333333
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=6.7e-10 Score=91.60 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH----------------HHHHHHhcCChHHHHHHhccCCC--
Q 042503 235 VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA----------------LVDFYCKCGILDTARNVFKEIPR-- 296 (477)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~-- 296 (477)
+......+...|+++.|...++.+.+.. |.+...+.. +..+|.+.|++++|+..|++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3334445566777777777777777766 566666655 66666667777777766666543
Q ss_pred -CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc--HHHHHHHHHHhhhccCCCCChHHH
Q 042503 297 -KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL--VEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 297 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
.++..|..+..++...|++++|...|++..+.. |.+...+..+..++...|+ ...+...++.+.. ..|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHH
Confidence 244556666666666677777777777666654 4456666666666554443 2334444444331 11222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGS 407 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 407 (477)
..+..++...|++++|+..|++. ...|+......
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33444555566667777777666 55666544433
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=4.4e-08 Score=91.66 Aligned_cols=372 Identities=10% Similarity=0.019 Sum_probs=196.2
Q ss_pred cCC-CchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCC-CchHHH
Q 042503 11 GRN-TRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGP-SEEPVK 86 (477)
Q Consensus 11 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~ 86 (477)
..| ++..|+.+++..+..- |. |+++.+..+|+.... |++..|...+....+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 346 4888888888888764 33 789999999998876 899999998888777663 466788
Q ss_pred HHHHHHhC-CC-CCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 87 LFALLKNL-GI-WPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 87 ~~~~~~~~-~~-~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
+|+..... |. +++...|...+..+.. .++.+.+..+|+..+......-...|......- .......+..++.+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence 88887764 42 3355667777766542 456788899999988732211112222222211 11112222222211
Q ss_pred cCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCC
Q 042503 161 MSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSG--R-----DSEALRLFHEMRDQAFE 229 (477)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~ 229 (477)
. .+.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|+++.... +
T Consensus 149 ~-----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 T-----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred H-----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 0 0111222222222111 12223433333322110 0 233455666665542 3
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH-HHHhccCC----------C--
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA-RNVFKEIP----------R-- 296 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~----------~-- 296 (477)
.++..|...+.-+.+.|+++.|..+++.+... |.+...+.. |....+.++. ..+.+... .
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 44555555555556666666777777666666 222222221 1111111111 01111100 0
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-cHHHHHHHHHHhhhccCCCCChHHHHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-LVEKARELFASMTGLHSIVPNLEHYGC 375 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (477)
.....|...+....+.++.+.|..+|++. ... +.+...|......-...+ +.+.|..+|+...+.. +.++..+..
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~ 359 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 01134555555555666777788888777 221 223344432222222223 5777888888777433 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677788888888888772 2456777777766777888888777777763
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.3e-09 Score=106.79 Aligned_cols=166 Identities=7% Similarity=-0.061 Sum_probs=79.4
Q ss_pred hccCcccchHHHHHHHH--------HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHh
Q 042503 243 ARLGAVDIGQWIHSYAE--------SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAF 311 (477)
Q Consensus 243 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 311 (477)
...|++++|...++.+. +.. |.+...+..+...+...|++++|+..|+++.+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 34444555555555444 222 44444445555555555555555555554443 233444445555555
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.|++++|...|++..+.. +.+...+..+..++...|++++ +..|+++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555443 3344444555555555555555 55555554211 2334445555555555555555555
Q ss_pred HHHhc-CCCCCH-HHHHHHHHHHHH
Q 042503 392 LIRSM-SIRPNA-AIWGSLLSSCRT 414 (477)
Q Consensus 392 ~~~~~-~~~p~~-~~~~~l~~~~~~ 414 (477)
.|++. ...|+. ..+..+..++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhhcccCcccHHHHHHHHHHHHc
Confidence 55555 344442 344444444433
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=1.4e-08 Score=95.05 Aligned_cols=373 Identities=10% Similarity=-0.055 Sum_probs=219.0
Q ss_pred hcC-ChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC-chhHHHHH
Q 042503 46 TLN-EIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD-LRVGQCVH 123 (477)
Q Consensus 46 ~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 123 (477)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36666666665443 2211 8889999999988873 5788888887777766653 45677778
Q ss_pred HHHHHh-cccC-cchHHHHHHHHHH----hcCChhhHHHHhcccCC-CchHHhHHHHHHHH---hcCChHHHHHHHHhcC
Q 042503 124 GEIIRS-GFER-FGSIRIGVVELYT----SCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFC---KKGDVDKGLYLFREMR 193 (477)
Q Consensus 124 ~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~ 193 (477)
+..+.. |..+ +...|...+..+. ..|+.+.+.++|++... |.. .+..+-..|. ...+...+.+++.+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~-- 148 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGD-- 148 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHH--
Confidence 877764 4333 5567777776544 24567778888777655 211 1111111111 11111222222211
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--C-----cccchHHHHHHHHHhCCccc
Q 042503 194 ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARL--G-----AVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~ 266 (477)
. .+.+..|..+++.+...--..+...|...+.--... + ..+.+..+++++.... |.
T Consensus 149 -------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~ 211 (493)
T 2uy1_A 149 -------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YY 211 (493)
T ss_dssp -------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TT
T ss_pred -------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CC
Confidence 1 122334444444433210011333444444332211 1 1234677899988876 77
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcC---------CCC---CH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKG---------VSP---NK 334 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~---~~ 334 (477)
.+.+|...+..+.+.|+.+.|..+|++.... +.....- -.|....+.++. ++.+.+.- ..+ ..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccH
Confidence 7889999999999999999999999976543 3221111 123332222222 33333210 011 12
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-CVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
..|...+....+.++.+.|..+|+++. ..+ .+...|...+..-...+ +.+.|.++|+.. ..+.++..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELG-NEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHT-TSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh-CCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446666666667888999999999993 222 24444543333323333 699999999988 332235566777777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
....|+.+.|..+|+++ +.+...|..++..-...|+.+.+..++++..+
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78899999999999997 33567888888888889999999998888875
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=6.8e-10 Score=85.62 Aligned_cols=98 Identities=9% Similarity=-0.080 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...+..+...+.+.|++++|+..|++. ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456777888888899999999999888 4444 5678888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 042503 447 AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|...+++.++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999888754
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=4.5e-09 Score=91.37 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHH-H
Q 042503 229 ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNA-M 305 (477)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l 305 (477)
+.+...+..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...++++.. |+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3344555666667777788888888888887777 77888888999999999999999999999876 43332222 2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC 385 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (477)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223566778888888888888875 6677888888888888899999998888887533212225677778888888888
Q ss_pred HHHHHHHHHh
Q 042503 386 VREAYDLIRS 395 (477)
Q Consensus 386 ~~~A~~~~~~ 395 (477)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8887777765
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.9e-08 Score=87.02 Aligned_cols=221 Identities=8% Similarity=-0.044 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccC--cccchHHHHHHHHHhCCccchhHHHHHHHHHH----Hhc---C
Q 042503 213 DSEALRLFHEMRDQAFELDEAT-VVAVLPICARLG--AVDIGQWIHSYAESSGLYRKVVSVGNALVDFY----CKC---G 282 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 282 (477)
.++|+.+++.++.. .|+..| ++.--.++...| +++++..+++.+.... |.+..+|+.-...+ ... +
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccC
Confidence 35677777766654 333332 344444444445 6666666666666655 55555554443333 333 4
Q ss_pred ChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCch--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc------HH
Q 042503 283 ILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGE--LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL------VE 351 (477)
Q Consensus 283 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~------~~ 351 (477)
++++++.+++++.+ .+..+|+.-.-.+.+.|.++ +++..++++++.. +-|...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 55555555555443 23334444444444455555 5555555555544 3344444444444444443 45
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhc-CC----CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE-AYDLIRSM-SI----RPNAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
++++.++++.... +-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++.++.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555444221 3344444444444444444222 23333333 11 223344444445555555555555555
Q ss_pred HHHHh-cCCCCCchHH
Q 042503 426 KELIN-LEPWNSGNYV 440 (477)
Q Consensus 426 ~~~~~-~~p~~~~~~~ 440 (477)
+.+.+ .+|.....|.
T Consensus 282 ~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHTTCGGGHHHHH
T ss_pred HHHHhccChHHHHHHH
Confidence 55543 4454444443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=4.4e-09 Score=101.23 Aligned_cols=151 Identities=13% Similarity=-0.034 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777666553 445666666777777777777777777776632 234456666677777777777777777
Q ss_pred HHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHhCC
Q 042503 393 IRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG---GRWDDAETLRMWMRENN 466 (477)
Q Consensus 393 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 466 (477)
+++. ...| +...+..+..++...|++++|.+.++++++.+|.++..+..++.++... |++++|.+.+++.++.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7766 3233 3566667777777777777777777777777777777777777777777 77777777777766544
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=4.2e-09 Score=87.18 Aligned_cols=128 Identities=7% Similarity=-0.101 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
+..+...+...|++++|...+++.. .|+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 4455666777788888888777663 5577777777888888888888888888777432 445667777777888
Q ss_pred hcCCHHHHHHHHHhc-CCCC-C----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 382 RSGCVREAYDLIRSM-SIRP-N----------------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
..|++++|++.|++. ...| + ...+..++.++...|++++|...++++++..|.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888777 2222 1 2567777777888888888888888888887764
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=4.9e-09 Score=87.60 Aligned_cols=188 Identities=10% Similarity=-0.049 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCc-cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCce----eHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLY-RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVV----SWN 303 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~ 303 (477)
+...+......+...|+++.|...|+.+.+.... +.....+..++.+|.+.|++++|+..|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777889999999999999999987631 22346778899999999999999999999865 3322 455
Q ss_pred HHHHHHHh------------------cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC
Q 042503 304 AMISGLAF------------------NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS 365 (477)
Q Consensus 304 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (477)
.+..++.. .|++++|...|+++++.. |-+.......... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----H------HHHHHHH----
Confidence 55555554 578999999999998863 3233222211110 0 0111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.....+...|.+.|++++|+..|+++ ...|+. ..+..++.++.+.|+.++|.+.++++....|.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234677889999999999999998 444442 568889999999999999999999999999887654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=2.9e-09 Score=93.67 Aligned_cols=219 Identities=14% Similarity=0.019 Sum_probs=151.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR-LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA 287 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (477)
..|++++|..++++..+.. +.. +.. .++++.|...+.. .+..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHH
Confidence 3577888999988876542 111 111 3555555555443 34567777888888
Q ss_pred HHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHhhccccHHHH
Q 042503 288 RNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAKG--V-SPN--KATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 288 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~a 353 (477)
...|.+..+ .+ ..+|+.+...|...|++++|+..+++..+.- . .+. ..++..+..+|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 877776543 11 2467788888999999999999999876631 1 121 4567888888988 999999
Q ss_pred HHHHHHhhhccCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHHcCChHHH
Q 042503 354 RELFASMTGLHSIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN----AAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a 421 (477)
+..|++..+...-.. ...++..+...|.+.|++++|+..|++. .+ .++ ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998874221111 1457888999999999999999999988 21 122 23667777788888999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCchHHHH
Q 042503 422 EHAVKELINLEPWNSGN-----YVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 457 (477)
...+++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 88865443 33445544 5677666655
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=4e-09 Score=78.85 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=62.9
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCR 413 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 413 (477)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44455555666666666666666655321 344555666666666666666666666655 2222 3455666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
..|++++|++.|+++++++|.++.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666655555443
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=3.9e-09 Score=84.41 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
|...+++..+.. +.+...+..+..++...|++++|...|+++ ...|+ ...+..++.++...|+.++|...|+++
T Consensus 93 a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 445555544211 233455555556666666666666666555 33333 335555666666666666666666655
Q ss_pred H
Q 042503 429 I 429 (477)
Q Consensus 429 ~ 429 (477)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=2.2e-07 Score=80.38 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC--ChHHHHHHhccCCC---CCceeHHHHHHHH----Hhc---CCc
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG--ILDTARNVFKEIPR---KNVVSWNAMISGL----AFN---GRG 315 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~ 315 (477)
.++|......+...+ |....+|+.-...+...| ++++++..++.+.. .+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 357888888888888 889999999889998888 99999999998875 3445666655555 455 789
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH--HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC------HH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE--KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC------VR 387 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 387 (477)
++++.+++++.+.. +-|...|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999886 668888888777777788877 9999999998533 5566777766666666666 88
Q ss_pred HHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 388 EAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHV-ELAEHAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 388 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
++++.++++ ..+-|...|+.+...+.+.|.. +.+..+.+++++.+ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999888 3345678888888888888774 44667888887766 78888999999999999999999999999
Q ss_pred HHh
Q 042503 462 MRE 464 (477)
Q Consensus 462 ~~~ 464 (477)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=3.7e-09 Score=79.00 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+......|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456778899999999999999999998 444 467899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|++++|.+.+++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998754
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=1.6e-09 Score=83.63 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..+..+...+.+.|++++|+..|++. .. +.+...|..+..++...|++++|+..++++++++|.++..+..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444455555555555555555554 22 22344555555555555555555555555555555555555555555555
Q ss_pred cCCchHHHHHHHHHHh
Q 042503 449 GGRWDDAETLRMWMRE 464 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~ 464 (477)
.|++++|...+++.++
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.99 E-value=1.2e-08 Score=80.57 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSC 412 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 412 (477)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++. .. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456667777788888888888888887432 446777888888888999999999988887 33 34567888899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI--YAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 464 (477)
...|++++|...++++++..|.++..+..+..+ +.+.|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888887555555 7788999999999887654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=3.2e-08 Score=81.78 Aligned_cols=132 Identities=5% Similarity=-0.132 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL 349 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 349 (477)
.+..+...+...|++++|...|++...++...|..+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345678888999999999999999998888899999999999999999999999999875 6678899999999999999
Q ss_pred HHHHHHHHHHhhhccCCCC--------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 350 VEKARELFASMTGLHSIVP--------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
+++|...|++..+...-.+ ....+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999985321111 2267888999999999999999999998 666764
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=4.5e-08 Score=80.79 Aligned_cols=175 Identities=10% Similarity=-0.073 Sum_probs=132.6
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-CCceeHHHHHHHHHhcC----CchHHHHHHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-KNVVSWNAMISGLAFNG----RGELGVELYEQ 324 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 324 (477)
+|...|++..+.+ ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|..+|++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3555566665554 344556677777778888888888877655 355667777777776 6 89999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 042503 325 MIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIV-PNLEHYGCMVDVLGR----SGCVREAYDLIRS 395 (477)
Q Consensus 325 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 395 (477)
..+.| +...+..+...|.. .+++++|...|++..+ .+.. .++..+..|...|.. .+++++|+.+|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 98766 56677788888877 7899999999999984 3211 126788889999988 8899999999999
Q ss_pred c-CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 042503 396 M-SIRPNAAIWGSLLSSCRTH-G-----HVELAEHAVKELINLEP 433 (477)
Q Consensus 396 ~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 433 (477)
. ...++...+..+...|... | +.++|...|+++.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 4345667788888888653 3 89999999999988875
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.94 E-value=1.7e-08 Score=76.23 Aligned_cols=118 Identities=6% Similarity=-0.090 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 409 (477)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.+++. .. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34556667777777777777777777777632 2345667777777777788888888877776 22 33567788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.++...|++++|...++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=2.3e-08 Score=74.40 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ..+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4567777777888888888888888887432 445677778888888888888888888887 224456788888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=1.4e-08 Score=76.40 Aligned_cols=118 Identities=12% Similarity=-0.012 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~ 410 (477)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|.+.+++. .. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 45567777788888888999998888887432 446777888888888999999999998887 33 335678888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.+...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=4.6e-08 Score=85.39 Aligned_cols=160 Identities=10% Similarity=-0.045 Sum_probs=119.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGV-SPNK----ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGC 375 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 375 (477)
.+..+...|++++|..++++...... .|+. ..+..+...+...+++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876421 2221 13335667777888999999999998742222233 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-----SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYV 440 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 440 (477)
+...|...|++++|+..|+++ ..+.+ ..++..++..|.+.|++++|...++++++..+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999998887 11122 2477889999999999999999999998765322 56889
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHHh
Q 042503 441 LLSNIYAEGGR-WDDAETLRMWMRE 464 (477)
Q Consensus 441 ~l~~~~~~~g~-~~~A~~~~~~~~~ 464 (477)
.++.+|.+.|+ +++|.+.+++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=6e-09 Score=83.40 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=93.7
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH-HHhcCCH-
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV-LGRSGCV- 386 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 386 (477)
+...|++++|...+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888887765 5677788888888888888888888888887432 3456677777777 7778887
Q ss_pred -HHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 387 -REAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 387 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
++|...+++. ...| +...+..++..+...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888887 3333 456777888888888888888888888888888765533
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.93 E-value=5.9e-08 Score=84.67 Aligned_cols=162 Identities=9% Similarity=-0.082 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccccHHHHHHHHHHhhhccCC--CCC--hHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNK-----ATFVGVLTCCAHAGLVEKARELFASMTGLHSI--VPN--LEHY 373 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~ 373 (477)
...+..+...|++++|...+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455566777777777777776664322111 12334555667778888888888877632111 111 3477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCch
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM----SIRPN-----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW------NSGN 438 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~ 438 (477)
+.+...|...|++++|...|++. ...|+ ..++..++..|...|++++|...++++++..+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888888889999888888876 11222 257888888899999999999999988865421 1457
Q ss_pred HHHHHHHHHhcCCchHH-HHHHHHHHh
Q 042503 439 YVLLSNIYAEGGRWDDA-ETLRMWMRE 464 (477)
Q Consensus 439 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 464 (477)
+..++.+|.+.|++++| ...+++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888999999999999 776776543
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=1.1e-08 Score=78.54 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++.+|.++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3444555555666666666666555 222 24455555666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHHHhC
Q 042503 450 GRWDDAETLRMWMREN 465 (477)
Q Consensus 450 g~~~~A~~~~~~~~~~ 465 (477)
|++++|...+++.++.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666655543
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=6.3e-08 Score=84.52 Aligned_cols=167 Identities=11% Similarity=-0.037 Sum_probs=123.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-Cc------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NV------VSWNAMISGLAFNGRGELGVELYEQMIAKGV---SP 332 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~ 332 (477)
+.....+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|...+++..+... .+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33444556677888899999999988875443 1 11 1234455667788999999999999876421 12
Q ss_pred C--HHHHHHHHHHhhccccHHHHHHHHHHhhh---ccCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC------
Q 042503 333 N--KATFVGVLTCCAHAGLVEKARELFASMTG---LHSIVP--NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI------ 398 (477)
Q Consensus 333 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------ 398 (477)
. ..+++.+...|...|++++|...|+++.+ ..+..+ ...++..+...|...|++++|+..+++. ..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 45788899999999999999999998873 221111 1258889999999999999999999887 11
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 042503 399 RPN-AAIWGSLLSSCRTHGHVELA-EHAVKELINL 431 (477)
Q Consensus 399 ~p~-~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 431 (477)
... ..++..++.+|...|++++| ...+++++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 111 57889999999999999999 8889988754
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=1.9e-09 Score=93.44 Aligned_cols=191 Identities=9% Similarity=-0.064 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
..+..+...+...|++++|+..|++..+ .+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344455555555555555555555432 234455556666666666666666666666543 445566666666666
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
..|++++|...|++..+... .+...+...+....+..+...... .......++......+.. + ..|+.++|.+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHH--HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 77777777776666553211 000011111111111111111111 111122333333333322 2 357788888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEG-GRWDDAETLRMWMREN 465 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 465 (477)
+++++.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888887776677776666665 6677888888777654
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=1.5e-08 Score=73.77 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=86.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW--NSGNYVLLS 443 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 443 (477)
.+...+..+...+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++..|. ++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34566777888888999999999999887 32 345678888999999999999999999999999999 899999999
Q ss_pred HHHHhc-CCchHHHHHHHHHHhCCC
Q 042503 444 NIYAEG-GRWDDAETLRMWMRENNV 467 (477)
Q Consensus 444 ~~~~~~-g~~~~A~~~~~~~~~~~~ 467 (477)
.++.+. |++++|.+.+++..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999987653
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.6e-08 Score=75.67 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. .. +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444455555555555555554 22 223445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 042503 450 GRWDDAETLRMWMRE 464 (477)
Q Consensus 450 g~~~~A~~~~~~~~~ 464 (477)
|++++|...+++.++
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=8.3e-09 Score=90.75 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=148.0
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh-cCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-CGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
.|++++|..+++++.+.. +.. +.+ .++++.|...|.+ ....|...|++++|...+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 567778888888877654 211 112 4778888877654 4677889999999999999
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 324 QMIAKGV---SP--NKATFVGVLTCCAHAGLVEKARELFASMTGLH---SIVP-NLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 324 ~m~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
+..+... .+ -..+|..+..+|...|++++|+..|++..+.. |.+. ...++..+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8876311 11 14578888899999999999999999876422 1111 13577888999988 99999999999
Q ss_pred hc-CCCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 042503 395 SM-SIRP---N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS------GNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 395 ~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
+. .+.| + ..++..+...+...|++++|+..++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 1111 1 46788899999999999999999999998765443 266777788888999999999999
Q ss_pred HHH
Q 042503 461 WMR 463 (477)
Q Consensus 461 ~~~ 463 (477)
+.+
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=2.5e-08 Score=88.72 Aligned_cols=130 Identities=12% Similarity=-0.015 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
...+..+...+.+.|++++|+..|++..+.....+ ....|..+..+|.+.|++++|+..+++. ...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33445555555555555555555555553211000 1467888999999999999999999988 333
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 042503 400 -PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA-ETLRMWMR 463 (477)
Q Consensus 400 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 463 (477)
.+...+..+..++...|++++|+..|+++++++|.++.++..++.++.+.|++++| ...+++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999998 45666664
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=6.1e-09 Score=80.40 Aligned_cols=117 Identities=10% Similarity=-0.055 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
.++++.... +.+...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|++. ...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444432 3345567778888899999999999999987432 557788888999999999999999999998 444
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 400 P-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 400 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
| +...+..++.++...|++++|+..|+++++..|.++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 4 5678888999999999999999999999999998776543
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=5.8e-08 Score=77.58 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=99.7
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHH-HHHcCCh--
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSS-CRTHGHV-- 418 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~~~~-- 418 (477)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++. .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 456788889999998887432 556788889999999999999999999988 33 3356788888888 7788998
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
++|...++++++.+|.++..+..++.+|...|++++|...+++.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999988753
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.84 E-value=1.7e-08 Score=74.74 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556778889999999999999998 4444 6788999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 042503 450 GRWDDAETLRMWMRENN 466 (477)
Q Consensus 450 g~~~~A~~~~~~~~~~~ 466 (477)
|++++|...+++.++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=3.1e-09 Score=86.83 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=90.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCC--------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVP--------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R 399 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 399 (477)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|.+.|++++|+..+++. .. +
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444455555555555555555543211111 1267788888999999999999999988 33 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH-HHHHHHHhCC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE-TLRMWMRENN 466 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 466 (477)
.+...+..++.++...|++++|...++++++..|.++.++..+..++...|+.+++. ..+..+...+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466889999999999999999999999999999999999999999999999888887 5666665544
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2.2e-08 Score=84.58 Aligned_cols=193 Identities=10% Similarity=-0.132 Sum_probs=128.3
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHH-------HHHHHhcCChHHHHHHhccCCCCCc-----------------
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNAL-------VDFYCKCGILDTARNVFKEIPRKNV----------------- 299 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~----------------- 299 (477)
..++.+.|.+.|.++.... |.....|..+ ...+.+.++..+++..+....+-.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4567777777777777777 7777777766 5666666666666665555443100
Q ss_pred -------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--h
Q 042503 300 -------VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--L 370 (477)
Q Consensus 300 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 370 (477)
..+-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.... .. .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHH
Confidence 012334566777888888888888776543 4333555555677788888888888875552 11 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIR-PN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
..+..+..++.+.|++++|++.|++. +.. |. .........++.+.|+.++|...|+++...+|. +.....|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 35667778888888888888888887 222 43 346667777888888888888888888888886 55555443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=1.1e-07 Score=73.09 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 410 (477)
+...+..+...+.+.|++++|+..|+++.+.. |.+...|..+..+|...|++++|+..|++. ...| ++..|..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45567788888999999999999999998532 567888999999999999999999999998 4444 4578999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+|...|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998743
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=2e-07 Score=81.29 Aligned_cols=160 Identities=11% Similarity=-0.034 Sum_probs=120.7
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCC---c------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CC----HHHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKN---V------VSWNAMISGLAFNGRGELGVELYEQMIAKGVS-PN----KATF 337 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 337 (477)
...+..+...|++++|...+++..+.. . ..+..+...+...|++++|+..+++....... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 344677888999999999988765421 1 12334566667778999999999999884322 22 3368
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhcc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLH----SIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPN-AAI 404 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~ 404 (477)
+.+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|+..+++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999999887311 11222 347888999999999999999999887 22233 578
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 042503 405 WGSLLSSCRTHGH-VELAEHAVKELINL 431 (477)
Q Consensus 405 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 431 (477)
+..++.++...|+ +++|.+.+++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999995 69999999998764
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.82 E-value=6.3e-08 Score=73.59 Aligned_cols=95 Identities=12% Similarity=-0.065 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+..+...+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++.+|.++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344444444444555555555544444 11 2223444445555555555555555555555555555555555555555
Q ss_pred hcCCchHHHHHHHHHHh
Q 042503 448 EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (477)
..|++++|...+++.++
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554443
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=6.1e-08 Score=79.35 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=72.7
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCC-CCChHHHHHHHHHHHhcCCHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL---HSI-VPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.|++++|.++++.+.. ........+..+...+...|++++|...+++..+. .+. +....++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4455555553333222 11123444555555555555555555555554421 011 112234455555555666666
Q ss_pred HHHHHHHhc-CC---CC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----CchHHHHHHHHHhcCCc
Q 042503 388 EAYDLIRSM-SI---RP-N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEP--WN----SGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 388 ~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~ 452 (477)
+|.+.+++. .. .+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 665555554 10 11 1 13455555566666666666666666654321 11 11235566666666666
Q ss_pred hHHHHHHHHHHh
Q 042503 453 DDAETLRMWMRE 464 (477)
Q Consensus 453 ~~A~~~~~~~~~ 464 (477)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=4.3e-08 Score=77.22 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 409 (477)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356678888899999999999999999998532 457788999999999999999999999998 4444 478899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.++...|++++|...|+++++++|.++..+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999998866555433
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=2e-08 Score=76.96 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 410 (477)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34455666777888899999999998887432 456778888888899999999999999888 3333 4577888899
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
++...|++++|...++++++..|.++........
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999999999999987766554433
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.6e-07 Score=79.38 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC-C----hhhHHHHHHHHHh
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER-S----VVSWNLMISSLGK 209 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~ 209 (477)
....+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344567788899999999999999875 54446666677888999999999999877652 2 2367778889999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 210 SGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++.... |. ..++..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHH
Confidence 9999999999998875433253 3345566667788888888988888888887 44 4444433
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=1.9e-07 Score=68.57 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSC 412 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 412 (477)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555666666666666555321 234455555555566666666666666555 2222 345555666666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...|++++|...++++++.+|.++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666655555554443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=1e-07 Score=69.98 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
....+..+...+...|++++|...|++. .. +.+...+..++..+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999998 33 346788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 042503 447 AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999998764
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=9.6e-08 Score=71.37 Aligned_cols=112 Identities=8% Similarity=-0.117 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 411 (477)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4456677777888888888888888887432 456778888888888999999999888887 4344 46788889999
Q ss_pred HHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 042503 412 CRTHGHVELAEHAVKELINLE------PWNSGNYVLLSNIYA 447 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 447 (477)
+...|++++|...++++++.+ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999988 777777776666543
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=3.4e-07 Score=72.04 Aligned_cols=93 Identities=16% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|.++..+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444444 2222 3344444444444444444444444444444444444444444444444
Q ss_pred CCchHHHHHHHHHHh
Q 042503 450 GRWDDAETLRMWMRE 464 (477)
Q Consensus 450 g~~~~A~~~~~~~~~ 464 (477)
|++++|...+++.++
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=5.5e-06 Score=72.47 Aligned_cols=224 Identities=9% Similarity=-0.008 Sum_probs=128.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccC-cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-C-ChH
Q 042503 210 SGRDSEALRLFHEMRDQAFELDE-ATVVAVLPICARLG-AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC-G-ILD 285 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 285 (477)
.+..++|+.+++.++.. .|+. ..++.--.++...| .++++..+++.+.... |.+..+|+.-...+... + +++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445666666666654 3332 23344334444445 3666666666666666 67777777666666665 5 777
Q ss_pred HHHHHhccCCCCCc---eeHHHHHHHHHhcCCch--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc-----
Q 042503 286 TARNVFKEIPRKNV---VSWNAMISGLAFNGRGE--------LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL----- 349 (477)
Q Consensus 286 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 349 (477)
+++.+++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 78888877776443 44554444444555555 7888888888876 5577777777777666664
Q ss_pred --HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHhc-CC-------C
Q 042503 350 --VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV--------------------REAYDLIRSM-SI-------R 399 (477)
Q Consensus 350 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~ 399 (477)
++++++.++++.... +-|...|+.+-..+.+.|+. .+...+..++ +. .
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 677777777776422 45556666655555555543 2233333333 11 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCchHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELI-NLEPWNSGNYV 440 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~ 440 (477)
+++..+..++..|...|+.++|.++++.+. +.+|.....|.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 344555555666666666666666666654 44554443333
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=4.9e-08 Score=73.01 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG-------NYVLL 442 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 442 (477)
.+..+...+.+.|++++|+..|++. .+.| +...|..++.+|...|++++|++.++++++++|.++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444555555555666665555555 2222 3445555556666666666666666666655544432 34445
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 042503 443 SNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.++...|++++|++.+++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666655544
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=9.3e-08 Score=72.07 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=90.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+.+...+..+...+...|++++|.+.|++. ...| +...+..++..+...|++++|...++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345667888999999999999999999998 5444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 042503 445 IYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+.|++++|.+.+++.++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-07 Score=72.48 Aligned_cols=111 Identities=12% Similarity=-0.056 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWG 406 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 406 (477)
+...+..+...+...|++++|...|++..+ . .|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG-L--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-S--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-H--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455566666666666666666666666653 1 233 455566666666666666666666665 2222 445566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
.+..++...|++++|...++++++..|.++..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555554443
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=1.5e-07 Score=69.96 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999998 3 34467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=7.2e-08 Score=78.92 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=102.6
Q ss_pred HhcCChHHHHH---HhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccccH
Q 042503 279 CKCGILDTARN---VFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GV-SPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 279 ~~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~ 350 (477)
...|++++|.+ .+..-.......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566777776 544422234456777777777888888888888777662 11 12345677777888888899
Q ss_pred HHHHHHHHHhhhc---cCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCCH----HHHHHHHHHHHHcCC
Q 042503 351 EKARELFASMTGL---HSIVP--NLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPNA----AIWGSLLSSCRTHGH 417 (477)
Q Consensus 351 ~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~l~~~~~~~~~ 417 (477)
++|...+++..+. .+..| ....+..+...+...|++++|.+.+++. ...++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888877642 22111 2345777888888899999998888876 112222 345778888889999
Q ss_pred hHHHHHHHHHHHhcC
Q 042503 418 VELAEHAVKELINLE 432 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~ 432 (477)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=1.1e-06 Score=76.73 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=160.0
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC-ChHHHHHHhccCCCC---CceeHHHHHHHHHhc-C-CchHHH
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG-ILDTARNVFKEIPRK---NVVSWNAMISGLAFN-G-RGELGV 319 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 319 (477)
+..++|..++..+...+ |.+..+|+.-...+...| .+++++..++.+... +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457888999999998 889999998888888888 599999999998764 445666666666665 6 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHH--------HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC------
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE--------KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC------ 385 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 385 (477)
.+++++.+.. +-|...|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 9999999876 667888877666666666665 8999999988533 5577788887777777776
Q ss_pred -HHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhcC------CCCC
Q 042503 386 -VREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHV--------------------ELAEHAVKELINLE------PWNS 436 (477)
Q Consensus 386 -~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 436 (477)
++++++.++++ .. +-|...|+.+-..+.+.|.. .........++... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68899998887 33 44567787777767666654 23333333333332 4567
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.++..++.+|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 78999999999999999999999999754
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=6e-08 Score=83.93 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=107.4
Q ss_pred HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHh
Q 042503 235 VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAF 311 (477)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 311 (477)
+..+...+...|+++.|...+..+.+.. |.+...+..+..+|.+.|++++|...+++..+ .+...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444444555555555555555544 66667777777788888888888888777665 244567777888888
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.|++++|...|++..+.+ +.+...+...+....+. ..+... .... ....+.+......+... ..|+.++|++
T Consensus 85 ~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIE-ERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHH-HTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHH-HHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 888888888888877642 11111111111111111 111111 1122 12334555554444332 3688899998
Q ss_pred HHHhc-CCCCCHHHH-HHHHHHHHHc-CChHHHHHHHHHHHhc
Q 042503 392 LIRSM-SIRPNAAIW-GSLLSSCRTH-GHVELAEHAVKELINL 431 (477)
Q Consensus 392 ~~~~~-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~~ 431 (477)
.+++. ...|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887 666765433 3333334444 6688899999888653
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6e-07 Score=70.58 Aligned_cols=127 Identities=11% Similarity=-0.022 Sum_probs=98.2
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVL 380 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (477)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 46667777888888999999888888765 5577888888888889999999999998887432 45677888888899
Q ss_pred HhcCCHHHHHHHHHhc-CCCC-CHHHHH--HHHHHHHHcCChHHHHHHHHHHHh
Q 042503 381 GRSGCVREAYDLIRSM-SIRP-NAAIWG--SLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
...|++++|.+.|++. ...| +...+. ..+..+...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999888 3333 444453 334447778999999998887754
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=1.6e-07 Score=70.39 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=89.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+...+..+...+...|++++|...+++. .. +.+...+..++..+...|++++|...++++++..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567788889999999999999999998 33 44678899999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 042503 446 YAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+.|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.67 E-value=1.3e-07 Score=72.03 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL-------EPWNSGNY----VLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666777777777777777777777777 77777777 77777777777777777777776653
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=6.1e-07 Score=68.95 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=83.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++++..|.++..+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 445677778888888889999999888888 66676 5677888888888899999999999988888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+|...|++++|...+++.++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888888999999998888887653
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=1.2e-07 Score=71.09 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHH
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNL---EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLS 410 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 410 (477)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++. ...|+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455566667777777766666322 1222 35555666666666666666666665 22232 445566666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++...|++++|...++++++..|+++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 666666666666666666666665544433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=3.1e-07 Score=69.67 Aligned_cols=113 Identities=9% Similarity=-0.130 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSL 408 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 408 (477)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4467778888888888899999998888887432 455778888888888999999999988887 3333 56788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-----CCchHHHHHHH
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPW-----NSGNYVLLSNI 445 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 445 (477)
..++...|++++|...++++++..|. +......+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876 44444444444
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=5.8e-08 Score=86.38 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=80.3
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.++++.|...++...... +.....+..+...+.+.|++++|+..|++..+ |+...+ ..+.+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-
Confidence 455566665555544433 45555666666666666666666666665442 211000 00000000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP- 400 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 400 (477)
. +.....+..+..++.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|+..|++. ...|
T Consensus 192 ~-------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0003445555555555666666666665555321 334555555555666666666666666555 2222
Q ss_pred CHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 042503 401 NAAIWGSLLSSCRTHGHVELA-EHAVKELI 429 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 429 (477)
+...+..+..++...|+.++| ...++++.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555665555 33444443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=3.2e-07 Score=85.34 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R 399 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 399 (477)
..+..+...+.+.|+++.|+..|+++.+.....+ ....|..+..+|.+.|++++|+..+++. .. +
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555556666666666655553221111 1467888999999999999999999988 33 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET-LRMWMR 463 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 463 (477)
.+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|.+ .+++|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999988764 455543
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=9.1e-06 Score=70.73 Aligned_cols=192 Identities=9% Similarity=0.010 Sum_probs=112.9
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC--hHHHHHHhccCCC---CCceeHHHHHHHHHhcCC-chHHHHH
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI--LDTARNVFKEIPR---KNVVSWNAMISGLAFNGR-GELGVEL 321 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~ 321 (477)
++.+..+++.+.... |.+..+|+.-.-.+...++ +++++.+++++.+ .|..+|+.-.-.+...|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345566666666665 6677777666666666663 6677777776654 344556555556666676 4778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcc--------------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc----
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHA--------------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---- 383 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 383 (477)
++++++.. +-|...|+.....+... +.++++++.+....... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCcc
Confidence 88888775 55666666555444433 45677777777776322 44555555443333333
Q ss_pred -------CCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 384 -------GCVREAYDLIRSM-SIRPNAAIWGSLLSSC-----RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 384 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+.++++++.++++ ...||. .|..+..+. ...|..+++...+.++++++|....-|..+...
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666666 445554 233222211 124566677777777777777655555555443
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=6.3e-08 Score=71.30 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHhhhccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 042503 347 AGLVEKARELFASMTGLHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
.|++++|+..|++..+ .+ .+.+...+..+..+|...|++++|++.|++. ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666667777776663 21 1223445666666666777777777766666 2223 3456666666666677777777
Q ss_pred HHHHHHHhcCCCCCch
Q 042503 423 HAVKELINLEPWNSGN 438 (477)
Q Consensus 423 ~~~~~~~~~~p~~~~~ 438 (477)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777776666665543
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=9.7e-06 Score=70.57 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=130.4
Q ss_pred hHHHHHHhccCCC---CCceeHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc-HHHHHHHH
Q 042503 284 LDTARNVFKEIPR---KNVVSWNAMISGLAFNGR--GELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL-VEKARELF 357 (477)
Q Consensus 284 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 357 (477)
+++++.+++.+.. .+..+|+.-...+.+.++ +++++.+++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777664 355677777777777774 789999999999987 6688888877777777787 68999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc------
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRS--------------GCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH------ 415 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~------ 415 (477)
+.+.+.. +-|...|+.....+.+. +.++++++.+.+. .. +-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998533 55666776665555544 4578899998888 33 44566776555555444
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHHhCC
Q 042503 416 -----GHVELAEHAVKELINLEPWNSGNYVLLSNIY---AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 416 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.++++++.++++++..|++.-++..++... ...|..++....+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998754444443322 24678889999999998653
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=3.3e-07 Score=68.65 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchHHH
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN-------SGNYVL 441 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 441 (477)
..+..+...+...|++++|...|++. ..+.+...+..++..+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666677777777777777766 223355667777777777777777777777777776655 666777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.+|.+.|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777777777664
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=6.9e-07 Score=64.76 Aligned_cols=102 Identities=17% Similarity=0.065 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC---CHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP---NAAIWGSL 408 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 408 (477)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34455666677777788888888887776422 345667777778888888888888888877 3334 46778888
Q ss_pred HHHHHHc-CChHHHHHHHHHHHhcCCCCC
Q 042503 409 LSSCRTH-GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 409 ~~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..++... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888887654
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.57 E-value=3.2e-07 Score=71.97 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhcc------C----------CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLH------S----------IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
...+......+.+.|++++|+..|.+..+.. . .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456677777888888888888888776420 0 0112345666677777777777777777766
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 042503 397 SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS-GNYVLLSNI 445 (477)
Q Consensus 397 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 445 (477)
...| +...|..++.++...|++++|...|+++++++|.++ .....+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3333 456667777777777777777777777777777665 334444333
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.3e-06 Score=80.90 Aligned_cols=190 Identities=7% Similarity=-0.060 Sum_probs=130.7
Q ss_pred HHHHHhcCChHHHHHHhccCCCC-----Cc---------------eeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCC
Q 042503 275 VDFYCKCGILDTARNVFKEIPRK-----NV---------------VSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPN 333 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~-----~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 333 (477)
...+.+.|++++|++.|..+.+. +. .++..++..|...|++++|..++..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455566666666666554321 00 12667888888999999999988887652 11122
Q ss_pred H----HHHHHHHHHhhccccHHHHHHHHHHhhhc---cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CC--
Q 042503 334 K----ATFVGVLTCCAHAGLVEKARELFASMTGL---HSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-----SI-- 398 (477)
Q Consensus 334 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~-- 398 (477)
. ...+.+...+...|+++.+..+++..... .+..+ -..++..+...|...|++++|..++++. +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334445556778899999888876531 12222 2457788899999999999999998877 11
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 399 RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLE---PWN----SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 399 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+|. ...+..++..|...|++++|..+++++.... +.+ ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 3578888999999999999999999987654 222 23566777778889999999988877754
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=7.9e-07 Score=66.56 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----CCC----HHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----RPN----AAIW 405 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 405 (477)
..+..+...+...|+++.|...|++..+.. +.+...+..+...|...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 455666667777777777777777776322 445666777777777788888887777776 11 222 5677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..++.++...|++++|...++++++..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888888888999999999999888887 56666666665543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=2.8e-07 Score=86.04 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=98.5
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
+...+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445677899999999999888532 455788899999999999999999999988 4444 56789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHH
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNI--YAEGGRWDDAETLRM 460 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 460 (477)
+++|++.++++++..|.++.++..++.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888999999999987
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=8.7e-07 Score=66.10 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----CCC----HHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----RPN----AAIWGS 407 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 407 (477)
+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444555555555555555544221 233444555555555555555555555444 11 111 124555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
++.++...|++++|++.|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66666666677777777776666655
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=1.7e-06 Score=64.72 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNI 445 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 445 (477)
..+...+...|++++|...|++. ...|+. ..+..++.++...|++++|...++++++..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677777788887777776 222322 466667777777778888888888777777777 5667777777
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 042503 446 YAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~ 465 (477)
|.+.|++++|...++++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77778888887777777664
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=8.3e-07 Score=65.54 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=62.8
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH 415 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 415 (477)
..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344555666777777777777776422 445666677777777777777777777776 3344 456777777777888
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 042503 416 GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~ 436 (477)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888887777643
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.51 E-value=2.9e-07 Score=81.86 Aligned_cols=149 Identities=11% Similarity=-0.033 Sum_probs=82.9
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34566666777788888888888887765 333321 23344444443322 1 1378889999
Q ss_pred HHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCchHHH
Q 042503 380 LGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY-AEGGRWDDAE 456 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 456 (477)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|.++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4444 6789999999999999999999999999999999999999998884 4567788899
Q ss_pred HHHHHHHhCCCc
Q 042503 457 TLRMWMRENNVK 468 (477)
Q Consensus 457 ~~~~~~~~~~~~ 468 (477)
..++++......
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 999999876533
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.50 E-value=9.1e-07 Score=69.10 Aligned_cols=130 Identities=14% Similarity=-0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AA 403 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 403 (477)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666655431110111 135566666777777777777777665 11111 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEP------WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+..+...+...|++++|...++++++..+ .....+..++..+...|++++|.+.+++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566777778888888888888888876532 11346778888888888888888888877653
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.49 E-value=9.4e-07 Score=79.48 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|+++++++|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999998 5555 5678999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHH
Q 042503 447 AEGGRWDDAETL 458 (477)
Q Consensus 447 ~~~g~~~~A~~~ 458 (477)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 183
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=2.8e-07 Score=75.10 Aligned_cols=126 Identities=11% Similarity=0.005 Sum_probs=81.8
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccccHHHHHHHHHHhhhcc
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPN----------------KATFVGVLTCCAHAGLVEKARELFASMTGLH 364 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (477)
.+..+...+...|++++|...|++..... +.+ ...+..+..++...|++++|+..+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 45555666667777777777777776642 112 266777788888888888888888888743
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 042503 365 SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAE-HAVKELI 429 (477)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 429 (477)
.+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...++.+++. ..+..+.
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456677888888888888888888888887 3344 4566666766666666666555 4444443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=8.5e-07 Score=69.53 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++.++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555555555555555555555555555555555555555555555555555555443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=2.7e-07 Score=67.84 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhc-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 042503 383 SGCVREAYDLIRSM-SI---RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
.|++++|+..|++. .. .|+ ...+..++.++...|++++|+..++++++.+|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56677777777776 43 232 35667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 042503 458 LRMWMREN 465 (477)
Q Consensus 458 ~~~~~~~~ 465 (477)
.+++.++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-07 Score=68.55 Aligned_cols=93 Identities=13% Similarity=-0.038 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYV 440 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 440 (477)
+...+..+...+...|++++|++.|++. .. +.+...+..+..++...|++++|+..++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567777888889999999999999888 33 3467888899999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 042503 441 LLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~ 461 (477)
.++.++...|+.++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888887666544
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=2.4e-06 Score=65.01 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=80.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCC-----C-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-------
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVP-----N-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SI------- 398 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------- 398 (477)
+......+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777766654221111 1 237888888888888888888888777 55
Q ss_pred CCCH-HHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 399 RPNA-AIW----GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 399 ~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.|+. ..| ...+.++...|++++|+..|++++++.|.+......+..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7765 577 8999999999999999999999999999988776655544
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=2e-06 Score=67.12 Aligned_cols=132 Identities=12% Similarity=0.045 Sum_probs=85.2
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVS-PN----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LE 371 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 371 (477)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665542100 11 135666777777778888888877776532111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
.+..+...+...|++++|.+.+++. ....+ ...+..+...+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777888888888888888776 11111 2467778888889999999999999887654
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=2.9e-06 Score=78.74 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred HhhccccHHHHHHHHHHhhhcc--CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHH
Q 042503 343 CCAHAGLVEKARELFASMTGLH--SIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWG 406 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 406 (477)
.+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|..++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999998888775421 1122 2457889999999999999999988876 334544 5789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELIN-----LEPWNSGN---YVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.|+..|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 46776554 4577788889999999999999998743
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.32 E-value=3.3e-06 Score=59.82 Aligned_cols=64 Identities=23% Similarity=0.197 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+...+..++.++...|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456666777777777777777777777777777777777777777777777777777776654
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.30 E-value=3.9e-06 Score=58.08 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...+..+...+...|++++|+..|++. .. +.+...+..+..++...|++++|...++++++.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777778888888888888888887 33 335677888888899999999999999999999998888888888887
Q ss_pred HhcC
Q 042503 447 AEGG 450 (477)
Q Consensus 447 ~~~g 450 (477)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=2.5e-05 Score=74.31 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=124.5
Q ss_pred HHHHHHhccCCCC---CceeHHHHHHHHHhcCC----------chHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc--c
Q 042503 285 DTARNVFKEIPRK---NVVSWNAMISGLAFNGR----------GELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG--L 349 (477)
Q Consensus 285 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~ 349 (477)
++|++.++++..- +..+|+.-..++...|+ +++++..++++.+.. +-+..+|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 4456666555442 23445555555555555 788888888888876 557778877777777888 6
Q ss_pred HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc-----------
Q 042503 350 VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-CVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH----------- 415 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 415 (477)
++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 789999999888533 456677777777777778 888899988888 4444 567787777776653
Q ss_pred ---CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 416 ---GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 416 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
+.++++.+.+++++..+|.+..+|..+..++.+.|+.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.2e-05 Score=74.45 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=121.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPN----------------KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN 369 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (477)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999988532211 124778899999999999999999988753322222
Q ss_pred h----HHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 042503 370 L----EHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLE----- 432 (477)
Q Consensus 370 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 432 (477)
. .+.+.+...+...|++++|..++++. +..+. ..++..++..+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555666789999999988876 22333 4678889999999999999999999987542
Q ss_pred -CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 433 -PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|.....+..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222457889999999999999999999987653
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=3e-06 Score=61.84 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=49.5
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|+..|++..+. .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556665521 2345566666666777777777777777666 2223 345666666677777777777777777766
Q ss_pred cCCC
Q 042503 431 LEPW 434 (477)
Q Consensus 431 ~~p~ 434 (477)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.28 E-value=6.3e-06 Score=57.03 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 399 RPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
++++..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|+..|+++.+.... +|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4577888888888876655 799999999999999999999999999999999999999999999988755 554
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=6.4e-06 Score=76.87 Aligned_cols=116 Identities=12% Similarity=-0.025 Sum_probs=74.1
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677777777777777764 445677777777777777777777777777742 2445667777777777777777
Q ss_pred HHHHHHHhc-CCCCC-HHHHHHHHHH--HHHcCChHHHHHHHH
Q 042503 388 EAYDLIRSM-SIRPN-AAIWGSLLSS--CRTHGHVELAEHAVK 426 (477)
Q Consensus 388 ~A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~~~~~~a~~~~~ 426 (477)
+|.+.|++. ...|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776 22332 2344444444 667777777777777
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=1.7e-06 Score=76.88 Aligned_cols=117 Identities=9% Similarity=-0.071 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSC 412 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 412 (477)
....+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence 3556777777888888888888888887632 23322 1223344444443332 13788899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|...+++.++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999987654
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.6e-06 Score=80.53 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=74.2
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.+++++|...++...... +.....+..+...+.+.|++++|+..|++..+ |+...+. .+..
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~---- 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------EKES---- 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------HHHH----
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-----------hHHH----
Confidence 345556665555444433 44555666666777777777777766665543 2110000 0000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN 401 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 401 (477)
.+.. +.....|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++. .+.|+
T Consensus 310 ~~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 310 KASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0000 0013444555555555555555555555555321 334455555555555555555555555555 33333
Q ss_pred H-HHHHHHHHHHHHcCChHHHH
Q 042503 402 A-AIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 402 ~-~~~~~l~~~~~~~~~~~~a~ 422 (477)
. ..+..+..++.+.++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455555555555555443
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=7.8e-06 Score=73.48 Aligned_cols=114 Identities=9% Similarity=-0.023 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRP-NAAIWGSLLSSC 412 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 412 (477)
...+..+...+.+.|++++|+..|++..+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777777666310 000 0000111110 1222 346888999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|+..++++++.+|.++.++..++.+|.+.|++++|...+++.++..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998753
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=1.9e-06 Score=65.44 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhC
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-----------RWDDAETLRMWMREN 465 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~ 465 (477)
++|+..|+++++++|+++.+|..++.+|...| ++++|++.|++.++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 35555555666666555555555665555443 555555555555543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=3e-05 Score=58.53 Aligned_cols=112 Identities=7% Similarity=-0.105 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEH 423 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 423 (477)
+++++|...|++..+ .+ .|.. . |...|...+.+++|+++|++.-..-++.....+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 355566666666552 33 2222 2 555555555666666666665222455556666666665 566666777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 467 (477)
.|+++.+.+ ++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 766666552 45666666766666 6667777777776666653
No 202
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.14 E-value=4.4e-07 Score=80.56 Aligned_cols=260 Identities=11% Similarity=0.031 Sum_probs=153.1
Q ss_pred hhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc
Q 042503 34 NLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV 113 (477)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 113 (477)
+.+|..+..+....+++.+|++.|-+. .|+..|..++.+..+.|.+++-+..+...++.. -++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhh
Confidence 445666666666666665555544322 344445666666666666666666655444432 2333334555566666
Q ss_pred CCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 114 GDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.-++.
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6555443332 124444445555555666666666555554432 222223333444444443322221
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 194 ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.++.||-.+-.+|...+++.-|.-.--.+.- .|| ....++..|...|.+++-+.+++...... ......++.
T Consensus 197 -ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE--rAHmGmFTE 268 (624)
T 3lvg_A 197 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTE 268 (624)
T ss_dssp -CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST--TCCHHHHHH
T ss_pred -CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC--chhHHHHHH
Confidence 4677899999999999998877654444332 122 23456777888999999999998887544 778888888
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----------CCceeHHHHHHHHHhcCCchHHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR-----------KNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
|.-.|++- ++++-.+.++..-. .....|.-++-.|.+-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88888875 55666665554322 24567888888888777777664
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.7e-05 Score=57.25 Aligned_cols=67 Identities=16% Similarity=0.050 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++...+..++..+...|++++|+..++++++..|.++..+..++.+|.+.|++++|+..+++.++..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3467788899999999999999999999999999999999999999999999999999999998764
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00011 Score=69.82 Aligned_cols=151 Identities=11% Similarity=-0.018 Sum_probs=125.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc----------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL----------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
...++|+..++++...+ +-+...|+.-..++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34567899999999986 5567778777667766666 899999999998533 5677788877778888
Q ss_pred cC--CHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--------
Q 042503 383 SG--CVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHG-HVELAEHAVKELINLEPWNSGNYVLLSNIYAEG-------- 449 (477)
Q Consensus 383 ~g--~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 449 (477)
.| +++++++.++++ .. +-+...|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 88 779999999999 33 446788998888888889 899999999999999999999999999998874
Q ss_pred ------CCchHHHHHHHHHHhCC
Q 042503 450 ------GRWDDAETLRMWMRENN 466 (477)
Q Consensus 450 ------g~~~~A~~~~~~~~~~~ 466 (477)
+.++++++++++.+...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHhhC
Confidence 55789999999888754
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=7.8e-06 Score=62.07 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHhc-CCCCC-HHHHHHHHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC----------VREAYDLIRSM-SIRPN-AAIWGSLLSSCRT 414 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 414 (477)
.+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345556666666555322 3445555555555555544 34777777777 44553 4677777777776
Q ss_pred c-----------CChHHHHHHHHHHHhcCCCCC
Q 042503 415 H-----------GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 415 ~-----------~~~~~a~~~~~~~~~~~p~~~ 436 (477)
. |++++|+..|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 489999999999999999864
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=0.00022 Score=53.69 Aligned_cols=112 Identities=7% Similarity=-0.102 Sum_probs=94.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVRE 388 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 388 (477)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.+.|++..+ . -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999988 55544 77778888889999999999984 3 467788888888888 889999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEP 433 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 433 (477)
|.++|++.-..-++.....+...|.. .++.++|.+.++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999334578888899999988 8999999999999988864
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=3.6e-05 Score=71.44 Aligned_cols=124 Identities=9% Similarity=-0.096 Sum_probs=90.8
Q ss_pred HHHhcCCchHHHHHHHHHHHcC---CCC----CHHHHHHHHHHhhccccHHHHHHHHHHhhhc----cC-CCCC-hHHHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKG---VSP----NKATFVGVLTCCAHAGLVEKARELFASMTGL----HS-IVPN-LEHYG 374 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~~ 374 (477)
.+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++..+. .| ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556788899988888876631 112 2457888889999999999998888876531 11 1222 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.|...|...|++++|..++++. ...|+. .+...+..++...+.+++|+..|+++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877 223443 34566667788899999999999998753
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=6.3e-05 Score=54.65 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..++..+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++.++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555543
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=4.5e-05 Score=52.52 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|...+++.++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46788889999999999999999999999999999999999999999999999999999998753
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.88 E-value=2e-05 Score=55.55 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRP-NAA-IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
....+.+.|++++|++.|++. ...| +.. .+..++.++...|++++|+..++++++.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677889999999999888 3344 456 88888999999999999999999999999988877633 445
Q ss_pred hHHHHHHHHHH
Q 042503 453 DDAETLRMWMR 463 (477)
Q Consensus 453 ~~A~~~~~~~~ 463 (477)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55666654443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.0011 Score=57.90 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=88.6
Q ss_pred CCceeHHHHHHHHH--hcC---CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLA--FNG---RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 363 (477)
.+...|...+.+.. ..+ +..+|..+|++.++.. |-....+..+..++... .........++.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 46667777766543 222 3467888888888874 43455555444444310 1111111222222211
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 223566777777777777778888888888888 445787777777888888888888888888888888864
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.70 E-value=0.00014 Score=66.31 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHhc---------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHHHHH
Q 042503 383 SGCVREAYDLIRSM---------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSG---NYVLLSN 444 (477)
Q Consensus 383 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 444 (477)
.|++++|+.++++. ...|+. .+++.++.+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667776666655 112333 4677777778888888888888877764 3455444 4777777
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 042503 445 IYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~ 464 (477)
+|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888888777654
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00016 Score=50.91 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
+.+...+..+..+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.+++++++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 345566777777777777777777777776 3333 346777777777788888888888887776654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.64 E-value=0.00014 Score=51.08 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSG-NYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+..+...|++++|+..++++++.+|.++. .+..++.+|...|++++|.+.+++.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566788999999999999999999999999 99999999999999999999999998764
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00031 Score=64.07 Aligned_cols=94 Identities=13% Similarity=-0.053 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHHHhhhc--cCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHH
Q 042503 346 HAGLVEKARELFASMTGL--HSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWGSLL 409 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 409 (477)
..|++++|+.++++..+. .-+.|+ ..+++.|..+|...|++++|..++++. ...|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999888876542 112222 357889999999999999999998887 335554 5789999
Q ss_pred HHHHHcCChHHHHHHHHHHHh-----cCCCCCchH
Q 042503 410 SSCRTHGHVELAEHAVKELIN-----LEPWNSGNY 439 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 439 (477)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999975 467766543
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.57 E-value=0.00038 Score=58.24 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHHHHHHHHhc-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchH
Q 042503 386 VREAYDLIRSM-SIRPN---AAIWGSLLSSCRT-----HGHVELAEHAVKELINLEPWN-SGNYVLLSNIYAEG-GRWDD 454 (477)
Q Consensus 386 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 454 (477)
...|...+++. .+.|+ ...|..++..|.. -|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777776 66777 4578888888887 489999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCCC
Q 042503 455 AETLRMWMRENNVKKSPGQ 473 (477)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~ 473 (477)
|.+.+++.+......+|++
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998877765664
No 217
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.56 E-value=0.031 Score=53.25 Aligned_cols=113 Identities=8% Similarity=-0.038 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHH----HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATF----VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
+.+.|...+....... ..+.... ..+.......+...++...+..... . .++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHH
Confidence 5677777777665443 2222222 2222233334423444445554331 1 23333333344444566777777
Q ss_pred HHHHHhcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 390 YDLIRSMSIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 390 ~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+.|+.+...+ ......=+.+++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777773221 233333345566667777777777777754
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.55 E-value=0.00037 Score=63.65 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHHHhc------CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHH
Q 042503 380 LGRSGCVREAYDLIRSM------SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSG---NYVL 441 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~ 441 (477)
+.+.|++++|+.++++. -..|+ ..+++.++.+|...|++++|+.+++++++ .+|.+|. .++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666665554 01111 13556666666666666666666666653 2343333 4556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+.+|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.0012 Score=60.20 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=78.0
Q ss_pred HHHhhccccHHHHHHHHHHhhhcc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HH
Q 042503 341 LTCCAHAGLVEKARELFASMTGLH--SIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AI 404 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 404 (477)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999999886422 12232 357889999999999999999998877 334544 57
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCchHHH
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSGNYVL 441 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 441 (477)
++.|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999975 46877665443
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.00044 Score=51.86 Aligned_cols=93 Identities=17% Similarity=0.008 Sum_probs=68.1
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhc-CCC-C--CHHHHHHHHHHHHHcCCh
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG---CVREAYDLIRSM-SIR-P--NAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~ 418 (477)
.......+.+-|.+..+ .+ +++..+...+..++++.+ ++++++.+|++. ... | +...+..+.-++.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 34556677777777663 33 367777777888888887 666888888887 323 5 345677777888899999
Q ss_pred HHHHHHHHHHHhcCCCCCchHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++|.+.++.+++.+|++..+..
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999997655433
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.41 E-value=0.0014 Score=46.27 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-----S----IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
+..-+-.|...+.+.|++..|...|+.. . ..+....+..+..++.+.|+++.|...++++++..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777778888887777766 1 123457888999999999999999999999999999987765
Q ss_pred HHHH
Q 042503 440 VLLS 443 (477)
Q Consensus 440 ~~l~ 443 (477)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5544
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.31 E-value=0.024 Score=40.89 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (477)
+.-.|..++..++..+..... +..-+|+++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 344678888888888877643 5566777776666666677777777776532222 23455555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
...-+-.++ .+...++..+.....+|.-++-.+++..++...+.+|....-++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 345667778888899999999999999987777778999999999999999999999999999999875
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.0065 Score=41.68 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 367 VPNLEHYGCMVDVLGRSGC---VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+++...+..+..++...++ .++|..++++. ...| ++.....++..+.+.|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5667777777777765444 68999999888 4444 45778888889999999999999999999999873
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0057 Score=53.54 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhc-----cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHh---cC-----CH---HHHHHH
Q 042503 330 VSPNKATFVGVLTCCAH-----AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGR---SG-----CV---REAYDL 392 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~~---~~A~~~ 392 (477)
.+.+...|...+++... ..+..+|..+|+++.+. .|+ ...|..+..+|.. .+ .. ..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 36677777777765432 34568999999999853 344 4455544444431 11 11 122222
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 393 IRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 393 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+ ..+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 3356778888888888888999999999999999997 46778899999999999999999999988764
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.09 E-value=0.0023 Score=47.98 Aligned_cols=65 Identities=6% Similarity=-0.135 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNAAIWGSLLSSCRTHG---HVELAEHAVKELINLE-P-WNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++..+...+..++++.+ +.++++.++++.++.+ | .+.+.+..++-+|.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555555544 3445555555555544 3 2344555555555555555555555555544
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.98 E-value=0.00035 Score=62.50 Aligned_cols=335 Identities=10% Similarity=0.103 Sum_probs=177.6
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++.++.+.|.+++..+.+.-..+. ..++.+=+.++-+|++.++..+-.+++.. ||..-...+.+-|...|.+
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lY 160 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY 160 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCH
Confidence 345666777777777666655544444 24455556677777777665544333222 4554455555555555555
Q ss_pred chHHHHHHHHHhCC--------------------CCCCcccHHHHHHHhhccCCchhH----------------------
Q 042503 82 EEPVKLFALLKNLG--------------------IWPDEYTFAPLLKACLGVGDLRVG---------------------- 119 (477)
Q Consensus 82 ~~a~~~~~~~~~~~--------------------~~p~~~~~~~l~~~~~~~~~~~~a---------------------- 119 (477)
+.|.-+|..+.... -.-++.||..+-.+|...+++.-|
T Consensus 161 eAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE 240 (624)
T 3lvg_A 161 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 240 (624)
T ss_dssp TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSS
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHH
Confidence 55554444332111 022445666665666555554444
Q ss_pred --------HHHHHHHHHhccc-CcchHHHHHHHHHHhcCChhhHHHHhcccCC-----------CchHHhHHHHHHHHhc
Q 042503 120 --------QCVHGEIIRSGFE-RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----------RDVIVRNLMIHGFCKK 179 (477)
Q Consensus 120 --------~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~ 179 (477)
+.+++.-+ |.+ .....|+-|.-.|++- ++++.++.++..-. .....|..++-.|..-
T Consensus 241 ~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 241 DRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp TTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 44443332 222 2345566666666554 45666666554433 2445678888888888
Q ss_pred CChHHHHHHHH-------------hcCC--CChhhHHH---------------HHHHHHhcCChhHHHHHHHHHHHcC--
Q 042503 180 GDVDKGLYLFR-------------EMRE--RSVVSWNL---------------MISSLGKSGRDSEALRLFHEMRDQA-- 227 (477)
Q Consensus 180 ~~~~~a~~~~~-------------~~~~--~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~m~~~~-- 227 (477)
.+++.|....- ++.. .|+..|-. |+.++...=+..++.++|++.-...
T Consensus 318 dE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLI 397 (624)
T 3lvg_A 318 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 397 (624)
T ss_dssp TCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGG
T ss_pred hhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhh
Confidence 88887654321 1111 34444444 4444434445555555554421110
Q ss_pred ------C-CCCHHHHH-HHHHHhhccCcccc------------hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH
Q 042503 228 ------F-ELDEATVV-AVLPICARLGAVDI------------GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA 287 (477)
Q Consensus 228 ------~-~~~~~~~~-~l~~~~~~~~~~~~------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (477)
+ .-|....+ ++-..+....|++. ...+-.++.++. -......-...|.+++++.++
T Consensus 398 kpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe----L~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 398 KPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE----LIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp TGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS----SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc----hHHHHHHHHHHHHhcccHHHH
Confidence 0 11222222 22223333333221 122333333322 223334445667778888888
Q ss_pred HHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 288 RNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
+.+.++= ..|.-.|...+..|+.+-+.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 474 i~l~KkD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 7665431 223334455567888888999999888877 556677888888877777777665
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.91 E-value=0.024 Score=56.92 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=54.1
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 44566677776666555 3445677777777777777777777776532 223333344455555544444
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.... .| -++.-..+|.+.|++++|++++.++
T Consensus 731 ~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33331 11 1222333455556666666555544
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.0059 Score=43.03 Aligned_cols=66 Identities=17% Similarity=-0.073 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLE-------PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+..-...++..+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999998753 334668999999999999999999999999864
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.67 E-value=0.016 Score=42.82 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHhhccccH------HHHHHHHHHhhhccCCCCChHH-HHHHHH------HHHhcCCHHHHHHHHHhc-
Q 042503 331 SPNKATFVGVLTCCAHAGLV------EKARELFASMTGLHSIVPNLEH-YGCMVD------VLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~- 396 (477)
+.|..+|-..+....+.|++ ++..++|++... .++|+... |...+. .+...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44677777777777777887 788888887773 45665321 111111 123446778888888777
Q ss_pred C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 397 S--IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 397 ~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
. .+- ...|......-.++|+...|.+++.+++.+.|.+...+...+.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1 111 5566666666677888888888888888887765554444433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.53 E-value=0.0075 Score=43.43 Aligned_cols=99 Identities=16% Similarity=-0.003 Sum_probs=66.9
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHhc-CCC-C--CHHHHHHHHHHH
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE---AYDLIRSM-SIR-P--NAAIWGSLLSSC 412 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~ 412 (477)
++..-........+.+-|.+... .+ .++..+--.+..++++..+... ++.++++. ... | .......+.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33444445556666777766653 33 3677776677778888776665 78888887 322 4 224556677788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
.+.|++++|.+.++.+++..|.+..+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8888999998888888888888765443
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.025 Score=56.82 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
..++..+.+.|.++.|..+.+.. ..-.......|++++|.++.+. -.+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence 56667777777777777665421 1112334566777777776543 235667888888888888888
Q ss_pred HHHHHHHHhh
Q 042503 352 KARELFASMT 361 (477)
Q Consensus 352 ~a~~~~~~~~ 361 (477)
.|++.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 8888887765
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.34 E-value=0.057 Score=38.88 Aligned_cols=65 Identities=6% Similarity=-0.173 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNAAIWGSLLSSCRTHGHVEL---AEHAVKELINLE-P-WNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+..+-..+.+++.++++... ++.+++...+.+ | ........|+-++.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555544333 555555555444 3 2344455555555555555555555555544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.30 E-value=0.17 Score=36.64 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=80.7
Q ss_pred hccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcCChHHHHHHH
Q 042503 111 LGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKGDVDKGLYLF 189 (477)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (477)
.-.|..++..++..+...+. +..-||-++--....-+-+-..++++.+.+ -|.. ..|++......+
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHHH
Confidence 33455566666655555432 223333333333333444444444444433 1211 122333333333
Q ss_pred HhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCC
Q 042503 190 REMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGL 263 (477)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 263 (477)
-.+. .+....+.-+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 85 ~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2222 23344566677888889988888888886543 477888888888999999999999999999888886
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.24 E-value=0.0066 Score=50.90 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHHh-----cCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHHc-C
Q 042503 349 LVEKARELFASMTGLHSIVPN---LEHYGCMVDVLGR-----SGCVREAYDLIRSM-SIRPN--AAIWGSLLSSCRTH-G 416 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~ 416 (477)
....|...+++..+. .|+ ...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++......++.. |
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666666666642 344 4467777777776 37888888888777 55552 56666677777664 7
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 042503 417 HVELAEHAVKELINLEPW 434 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~ 434 (477)
+.+.+.+.+++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888877765
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.056 Score=52.51 Aligned_cols=58 Identities=14% Similarity=-0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+.-...|...|+++.|+.+.++++...|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3335567789999999999999999999999999999999999999999999998773
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.15 Score=39.33 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=62.7
Q ss_pred HHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhH
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVG 119 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 119 (477)
-++.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....+ +..+.-.|...|+.+..
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566778888888877655 4566788888888888888888888877664 34444445556666554
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44443333322 1223333344455555555555443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.06 E-value=0.071 Score=39.45 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=55.5
Q ss_pred CCceeHHHHHHHHHhcCCc------hHHHHHHHHHHHcCCCCCHHH-HHHHHH------HhhccccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLAFNGRG------ELGVELYEQMIAKGVSPNKAT-FVGVLT------CCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 363 (477)
.|..+|-..+...-+.|++ ++..++|++.... ++|+... +...+. .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666777 6666777766664 4554211 001000 112336677777777777532
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.-.- ...|-.....-.++|++.+|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2122 555666666666777777777777766
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.49 Score=36.43 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=22.4
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555554443 2344455555555555555555555544
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.73 E-value=0.12 Score=37.91 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHhc-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 367 VPNLEHYGCMVDVLGRSGCV---REAYDLIRSM-SIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
.|+..+--.+..++.+..+. .+++.++++. ...| .......+.-++.+.|++++|.+..+.+++.+|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 45555554555555555433 3455556555 2223 2234444555666666666666666666666666543
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.65 E-value=2 Score=42.84 Aligned_cols=253 Identities=11% Similarity=-0.034 Sum_probs=131.6
Q ss_pred HHHhcCChHHHHHHHHhcCC----CChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 042503 175 GFCKKGDVDKGLYLFREMRE----RSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAF-------ELDEATVVAVLPI 241 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~ 241 (477)
+....|+.++++..+..... .+.. .=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34557788888888887664 1222 223344455666666677777777654321 0111112222222
Q ss_pred hhccCcc-cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-CCceeH--HHHHHHHHhcCCchH
Q 042503 242 CARLGAV-DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-KNVVSW--NAMISGLAFNGRGEL 317 (477)
Q Consensus 242 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~~~ 317 (477)
.+-.|.- +.+...+..+..............++...+.-.|+-+....++..+.+ .+.... -.+.-++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 3333322 244455555554331011112223445556677777766666665432 122222 223334557788888
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 318 GVELYEQMIAKGVSPNKATF--VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
+..+++.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888887642 3322222 23445677888988887788888742 122333333444455556777767777766
Q ss_pred c--CCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHh
Q 042503 396 M--SIRPNAAIWGSLLSSCRTHGHV-ELAEHAVKELIN 430 (477)
Q Consensus 396 ~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 430 (477)
+ ...|....-..+.-+....|+. .++...+..+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5 2233333333333334444443 567777777753
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.61 E-value=2.1 Score=42.73 Aligned_cols=265 Identities=9% Similarity=0.048 Sum_probs=147.7
Q ss_pred HHHhcCChhhHHHHhcccCC----Cch--HHhHHHHHHHHhcCChHHHHHHHHhcCC-CC----------hhhHHHHHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSH----RDV--IVRNLMIHGFCKKGDVDKGLYLFREMRE-RS----------VVSWNLMISS 206 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~~ 206 (477)
+....|+.++++.+++.... .+. ..-..+.-+....|..+++..++..... ++ +..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677899999999988764 222 2223444555666766677776666443 22 1122333334
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 207 LGKSGR-DSEALRLFHEMRDQAFELDEATVV--AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 207 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
++-.|. -+++...+..+.... .+...... .+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 443443 245666666665432 11111122 22233456677777788888777543 3343333445555557788
Q ss_pred hHHHHHHhccCCC-CCce-eHH---HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH
Q 042503 284 LDTARNVFKEIPR-KNVV-SWN---AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
.+.+..+++.+.. .++. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888777776653 3332 233 23446677888877777888887642 2233333333334444566666777777
Q ss_pred HhhhccCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 042503 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCV-REAYDLIRSMSIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 414 (477)
.+.+ .+ .|.+..-..+..+....|.. .+++..+..+...+|..+-...+.++..
T Consensus 619 ~L~~-~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSK-SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGG-CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHh-cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 6663 22 34444444444455555544 6788888888556666655444444443
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.34 E-value=0.071 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+--+.-++.+.|++++|.+..+.+++..|.+.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444455555555555555555555555443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.32 E-value=0.042 Score=49.37 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCC
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE-----NNVKKSPG 472 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 472 (477)
...++..+...|+++++...++.++..+|.+...+..++.+|.+.|+..+|++.|+++.+ .|+.|+|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999888999999999999999999988887643 47777654
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.67 E-value=0.17 Score=38.30 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998765
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.67 E-value=3.2 Score=39.66 Aligned_cols=376 Identities=12% Similarity=-0.011 Sum_probs=184.7
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCch
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLR 117 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 117 (477)
+..+..+.+.+++...+..+.. ...+...--....+....|+..+|....+.+-..| ...+.....++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3344445555556655555544 22222222234444555555555555555554443 223334444444444333322
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 197 (477)
. .. .-.-+......|+...|..+...+..........++..+. +...+....... .++.
T Consensus 154 ~----------------~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~ 212 (618)
T 1qsa_A 154 P----------------LA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATD 212 (618)
T ss_dssp H----------------HH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCH
T ss_pred H----------------HH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCCh
Confidence 1 11 1122234455667777777766663222222223332222 223333333322 2222
Q ss_pred h---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCcccchHHHHHHHHHhCCccchhHH
Q 042503 198 V---SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSV 270 (477)
Q Consensus 198 ~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (477)
. .+..-+.-+.+ .+.+.|...+....... ..+..... .+.......+....+...+....... .+...
T Consensus 213 ~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 287 (618)
T 1qsa_A 213 FTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHH
T ss_pred hhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC---CChHH
Confidence 2 11112222333 47899999998886543 23333322 23333344453445555555544433 22223
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 271 GNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..-.+....+.|+++.|...|+.+..... ...-=+..++...|+.++|..+|..+... .+ .|..+.. .+.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHc
Confidence 34455556678999999999999976322 11223455677889999999999998742 22 2333322 122
Q ss_pred ccHHHHHHHHHHhhhccCCCCC-hH-----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPN-LE-----HYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
|..-. +. .....+. .. .-..-+..+...|....|...+.......+......+.......|..+.+
T Consensus 361 g~~~~-------~~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 361 GEEYE-------LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp TCCCC-------CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCC-------CC-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHH
Confidence 21000 00 0000110 00 11123455778899999988888772234444445566666778888887
Q ss_pred HHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchHHH
Q 042503 422 EHAVKELINLEP---WNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 422 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
+....+....+. .-|..|..++.-+.+.-.++.++
T Consensus 433 v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 433 VQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 766554332220 11335666666666655555543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=3.1 Score=38.05 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC---------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC------CC----hhh
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH---------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE------RS----VVS 199 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~ 199 (477)
..|...|...|++.+|..++..+.. .-...+...++.|...+++.+|..++.++.. ++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3456666777777777776666532 1123455566777778888888777776532 11 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHH----HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQ-AFELDEATVV----AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
+...+..+...++|.+|.+.|.+.... ....|...+. .++.+..-.+....-..+......... -+....+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~-~~~l~~~~~L 299 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN-LKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc-ccccHHHHHH
Confidence 566777778888888888887776542 1112332222 122222222222333334444333332 4566677888
Q ss_pred HHHHHhc--CChHHHHHHhccCCCCCc
Q 042503 275 VDFYCKC--GILDTARNVFKEIPRKNV 299 (477)
Q Consensus 275 ~~~~~~~--~~~~~a~~~~~~~~~~~~ 299 (477)
+.+|... .+++.....|.....++.
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 8888765 467888888887766544
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.46 E-value=0.96 Score=33.21 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPW-NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..|+..+-..+.+++.++.+ ..+++.+++.+.+..|. ..+....|+-++.+.|++++|.++.+.+++.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 335677777777777777664 44677778877777763 4556777778888888888888888877765
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.24 E-value=3 Score=37.17 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC--------CCceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCCCHHHH-----
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPR--------KNVVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSPNKATF----- 337 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~----- 337 (477)
..|...|.+.|+.++...++..... ........++..+... +..+.-.++..+..+-. ..+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566667777777776666665543 1122344455555443 22333333333333210 0011112
Q ss_pred -HHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCHHHHHH
Q 042503 338 -VGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNAAIWGS 407 (477)
Q Consensus 338 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ 407 (477)
..++..|...|++.+|..++..+.+...-..+ ..++..-+..|...+++.++...+... .+.|++.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 24566667777777777777666532211111 223444556666777777777666655 22233332211
Q ss_pred ----HHHHHH-HcCChHHHHHHHHHHH
Q 042503 408 ----LLSSCR-THGHVELAEHAVKELI 429 (477)
Q Consensus 408 ----l~~~~~-~~~~~~~a~~~~~~~~ 429 (477)
-+..+. ..+++..|...|-++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777766665554
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=3 Score=38.07 Aligned_cols=183 Identities=10% Similarity=0.046 Sum_probs=115.7
Q ss_pred cCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----cc
Q 042503 281 CGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA----HA 347 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~ 347 (477)
.|+++.|++.+..+.+ . .......++..|...|+++...+.+.-+....-.. ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3678888877654432 2 23456678888999999999988887776543222 222233333322 22
Q ss_pred c--cHHHHHHHHHHhhhc--cCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCC---HHHHHHHHHHH
Q 042503 348 G--LVEKARELFASMTGL--HSIVP---NLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPN---AAIWGSLLSSC 412 (477)
Q Consensus 348 ~--~~~~a~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~ 412 (477)
. +.+.-..+.+.+... ..+-. .......|...|...|++.+|.+++.++ +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 222222233222210 11111 1233456888999999999999999988 22222 24666777889
Q ss_pred HHcCChHHHHHHHHHHHh---cCCCCC----chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 413 RTHGHVELAEHAVKELIN---LEPWNS----GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+|+.+|..+++++.. ..+.++ ..+...+..+...+++.+|-+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999753 223333 3567888888899999999988887754
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.04 E-value=4 Score=35.21 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELY----EQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
..+.++..-|.+.+++++|++++-. -...+.+.|+...+.++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456777788888999998887543 233455667666555544 5555578888888888887776
Q ss_pred hcccc--HHHHHHHHHHhhh---ccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 042503 345 AHAGL--VEKARELFASMTG---LHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 345 ~~~~~--~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 417 (477)
..... .+. ..+.+++.+ +.| ..-++.....+...|.+.+++.+|...|- .+.++.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 65442 111 122222211 112 23456777888999999999999999884 3545555777777666665554
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++--+ ....+--|.-.|+...|..+++...+
T Consensus 183 ~~e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHTAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGGHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3222222 22334446777888888887766654
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.90 E-value=0.62 Score=33.71 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPW-NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+-.|+..+-..+.+++.++.+ ..+++.+++.+.+.+|. ..+.+..|+-++.+.|++++|.++.+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 335666666666677766654 34567777777766663 3556777777777777777777777777654
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.28 E-value=4.9 Score=34.37 Aligned_cols=168 Identities=8% Similarity=-0.080 Sum_probs=100.8
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHH----HHHHHhCCCCCCcccHHHHHHHh
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKL----FALLKNLGIWPDEYTFAPLLKAC 110 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 110 (477)
..+..+..-|.+++++++|++++.. -...+.+.|+...|.++ .+-+.+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3666777778888999999887653 23345566777666654 44455567788887777777776
Q ss_pred hccCCch-hHHHHHHHHHH----hcc--cCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhc---C
Q 042503 111 LGVGDLR-VGQCVHGEIIR----SGF--ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK---G 180 (477)
Q Consensus 111 ~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~ 180 (477)
.....-+ .-.++++.+++ .|. .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 22344444443 222 235677888888889999999988877643333555565555544443 3
Q ss_pred ChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
...++- .. ..-.+--|.-.|+...|..+++...
T Consensus 183 ~~~e~d----------lf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVA----------EF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHH----------HH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHH----------HH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332221 11 1112233445677777777777654
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.19 E-value=4.6 Score=31.85 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (477)
.+....+.++.+.|+.+....+.+.+.+++..+-...+.++.+.++.+....+...+.+++...-...+.++...|. .+
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 33334444444444433333333333344444444445555555544333333333334554444555555555554 33
Q ss_pred HHHHHHHHHH
Q 042503 216 ALRLFHEMRD 225 (477)
Q Consensus 216 a~~~~~~m~~ 225 (477)
+...+..+..
T Consensus 170 ~~~~L~~~l~ 179 (201)
T 3ltj_A 170 VRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.15 E-value=3.9 Score=30.96 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhCC-CCCCc-------ccHHHHHHHhhccCCchhHHHHHHHHHH
Q 042503 68 FNSMIKAYSLNGPSEEPVKLFALLKNLG-IWPDE-------YTFAPLLKACLGVGDLRVGQCVHGEIIR 128 (477)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (477)
+-.-++.+...+.++.|.-+...+.... ..|+. .++..+..++...|++..|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3334455555666666665555544321 12221 1334445555556666666666665543
No 255
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.06 E-value=4.9 Score=31.98 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEA 216 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 216 (477)
+....+.++.+.|+.+....+.+.+.+++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.+. ..+
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhH
Confidence 3333344444444433333333333334444444445555555544333333333334555444455555555554 334
Q ss_pred HHHHHHHHH
Q 042503 217 LRLFHEMRD 225 (477)
Q Consensus 217 ~~~~~~m~~ 225 (477)
...+..+.+
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.99 E-value=0.47 Score=39.20 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.|+.++++..+...++.+|.|......|+..||-.|+|+.|.+-++..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444444445554444444443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.93 E-value=7.2 Score=33.64 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=111.7
Q ss_pred CCchhHhHHHHHHHHhhcc----cchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLH----QSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLF 88 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (477)
+.+++..+=++.-++.|-. ---..+.++..-|.+++++++|++++-. -...+.+.|+...|.++-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 3344444444444455522 1123667777888899999999987643 234556667776666555
Q ss_pred ----HHHHhCCCCCCcccHHHHHHHhhccCCch-hHHHHHHHHHH----hc--ccCcchHHHHHHHHHHhcCChhhHHHH
Q 042503 89 ----ALLKNLGIWPDEYTFAPLLKACLGVGDLR-VGQCVHGEIIR----SG--FERFGSIRIGVVELYTSCGQMDDGMKV 157 (477)
Q Consensus 89 ----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (477)
+-+.+.++++|......++..+.....-+ .-..+.+.+++ .| ..-++.....+...|.+.+++.+|...
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44555678888888888887776555322 22334444433 33 233567777888889999999999888
Q ss_pred hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 158 FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
|-.-.+++...+..++.-+...+...++ +... .-.+--|...++...|..+++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e~----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHTA----------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGGH----------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCccH----------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8543334445665555544444332111 1111 1223345556777777777666543
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.80 E-value=15 Score=38.25 Aligned_cols=121 Identities=16% Similarity=0.064 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---C-------------------
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---S------------------- 196 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~------------------- 196 (477)
..++..+...|.++-+.++...+.. +......+..++...|++++|.+.|.+.... +
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3455666677777777776655544 3333355667788888888888888776420 0
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 197 ----VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE----ATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 197 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
..-|..++..+.+.|.++.+.++-....+...+-+. ..|..+.+.+...|+++.|...+-.+..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 012444455555555555555554444433211111 1244455555555555555555544433
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.61 E-value=2.8 Score=28.33 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=64.2
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFAL 90 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (477)
-....++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44566889999999988874 333333445667788999999999999999999999877654 66776777777767
Q ss_pred HHhCCCCCCcccHH
Q 042503 91 LKNLGIWPDEYTFA 104 (477)
Q Consensus 91 ~~~~~~~p~~~~~~ 104 (477)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 44443333
No 260
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.77 Score=44.74 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHHHhcCC-CchHHHHHHHHHhCCCCCCcccHH--HHHHHhhccCC-chhHHHHHHHHHHh------cccCc------
Q 042503 71 MIKAYSLNGP-SEEPVKLFALLKNLGIWPDEYTFA--PLLKACLGVGD-LRVGQCVHGEIIRS------GFERF------ 134 (477)
Q Consensus 71 l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~------ 134 (477)
+++.+...++ .+.|.++|+++...+ |....+. .++..+...++ --+|.+++.+.++. ...+.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3333334455 467888888888753 4333322 22222222222 22345555444321 11111
Q ss_pred -----chHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 135 -----GSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 135 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
....+.=++.+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222224556677888888888777665 4 45678888888888888888888887775
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.28 E-value=3 Score=28.21 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=62.4
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFAL 90 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (477)
-....++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44556888889999888874 333333445667788999999999999999999999877654 55666666666666
Q ss_pred HHhCCCCCCcccH
Q 042503 91 LKNLGIWPDEYTF 103 (477)
Q Consensus 91 ~~~~~~~p~~~~~ 103 (477)
+..+| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 76665 3433333
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.00 E-value=2.3 Score=44.29 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc--CCCC-----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM--SIRP-----------------------NAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~--~~~p-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
-.+..+|...|++++|.+.|++. ++.. -..-|..++..+.+.|.++.+.++.+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666665 1110 1234566666777778888888877777
Q ss_pred HhcCCCCCc-----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 429 INLEPWNSG-----NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 429 ~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..+.+.. .|..+.+.+...|++++|...+-.+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 765533222 4666777777888888887777665543
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.87 E-value=1.5 Score=39.32 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=27.7
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555554221 334445555555555555555555555443
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.72 E-value=11 Score=33.66 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCC--------CchHHhHHHHHHHHhc-CChHHHHHHHHhcCC---CChhhH----
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHGFCKK-GDVDKGLYLFREMRE---RSVVSW---- 200 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~---~~~~~~---- 200 (477)
....|...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888888888888877665 2233445566655543 333333344333332 111222
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhhccCcccchHHHHHHHH
Q 042503 201 --NLMISSLGKSGRDSEALRLFHEMRDQAFELDEA-----TVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 201 --~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
..++..|...|++.+|..++..+.+.--+.|.. .+..-+..|...+++.++...+..+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 257788899999999999888887652222221 23334455566666666666665554
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.33 E-value=1.8 Score=29.43 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455666777777888999999999999999999999999999888544333 445666553
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.22 E-value=7.1 Score=31.01 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALR 218 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (477)
...+.++.+.|+.+....+.+.+.+++..+-...+.++.+.++.+....+.+.+.+++...-...+.++...|..+ +..
T Consensus 68 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~ 146 (211)
T 3ltm_A 68 RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVE 146 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHH
Confidence 3333444444443333333333344555555555555555555444444444444455544444555555555433 223
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 042503 219 LFHEMRDQAFELDEATVVAVLPICARLGA 247 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 247 (477)
.+..+.. .++...-...+.++.+.+.
T Consensus 147 ~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 147 PLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3333332 2344444444444444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.06 E-value=4.5 Score=31.78 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc---CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 386 VREAYDLIRSM---SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 386 ~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..++..+|..| ++ .--..-|......+...|++++|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555544 22 2233445555555555566666666666555544
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.59 E-value=11 Score=32.28 Aligned_cols=182 Identities=11% Similarity=-0.005 Sum_probs=109.5
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHH----HHHHHHcCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVEL----YEQMIAKGV 330 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~ 330 (477)
++.-.+.|..=.-...+.++..-|.+.+++++|++++.. -...+.+.|+...|.++ ++-..+.++
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 333333443233344557778888888999998887543 23345566776666554 445555688
Q ss_pred CCCHHHHHHHHHHhhcccc--------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCH
Q 042503 331 SPNKATFVGVLTCCAHAGL--------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNA 402 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 402 (477)
+++......++..+..-.. ...|+..-.+.-+ ...-++.....+...|.+.|++.+|...|-. +..-+.
T Consensus 89 ~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~ 165 (312)
T 2wpv_A 89 KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSM 165 (312)
T ss_dssp CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccH
Confidence 8888888888877654221 2223332222211 1234667788899999999999999998863 222245
Q ss_pred HHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTH---GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..+..++.-+... |...++--++- ..+--|.-.|+...|..+++...+
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666655555 54444332222 223335667888888888776643
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.38 E-value=6.3 Score=32.64 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhc
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRS 383 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 383 (477)
...+.|+.++++..+..-++.. |-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH---
Confidence 4556788888888888877775 667777788888888889998888888777632 3433 2344443321
Q ss_pred CCHHHHH-HHHHhc---C-CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 384 GCVREAY-DLIRSM---S-IRPNAAIWGSLLSSC--RTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 384 g~~~~A~-~~~~~~---~-~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
... ++|.-- + ......-...++.+. ...|+.++|.++-..+.+.-|..+..
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111 122211 1 111223334444444 34688888888888888877665543
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.98 E-value=9.8 Score=34.51 Aligned_cols=96 Identities=9% Similarity=-0.011 Sum_probs=50.6
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHH---
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKG--VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGC--- 375 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 375 (477)
++..+...|.+.|++++|.+.+.++...- ..--...+...++.+...+++..+...+.++.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666666666666666666666532 2222345555666666666777666666665432222222222111
Q ss_pred -HHHHHHhcCCHHHHHHHHHhc
Q 042503 376 -MVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 376 -l~~~~~~~g~~~~A~~~~~~~ 396 (477)
-+..+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122234556666666666554
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.67 E-value=10 Score=29.81 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 042503 142 VELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (477)
+..+...|..+....+.+.+.+++..+-...+.++...++.+....+.+.+..++...-...+.++.+.++
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333333333333333333334443333344444444443333333333333343333333333333333
No 272
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.34 E-value=6.9 Score=26.67 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 385 CVREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 385 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+.-+..+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|-.+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 333445555554 678899999999999999999999999998887655444555655543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.35 E-value=9.1 Score=28.55 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 421 AEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 421 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+.++|+.+.+.+ ...+..|...+..+...|++.+|.++++.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666665443 3334456666666666677777766666666554433
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.02 E-value=3.3 Score=37.66 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLH-SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+...+...+.+.|+++.|.+.+.++.... +...-...+-..++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455566666666666666666665311 11112344555555666666666666655555
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.53 E-value=3.4 Score=29.82 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-++.+....+-|++......+++|.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555666666778889999999999999999999999999999885443 33556766653
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.45 E-value=8.3 Score=26.10 Aligned_cols=30 Identities=3% Similarity=-0.004 Sum_probs=16.4
Q ss_pred HHHHhcCChhhHHHHhcccCCCchHHhHHH
Q 042503 143 ELYTSCGQMDDGMKVFDEMSHRDVIVRNLM 172 (477)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 172 (477)
..+...|++++|..+.+...-||...|.++
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 76 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFAL 76 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 344555666666665555555555555443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.90 E-value=8.9 Score=26.01 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=15.6
Q ss_pred HHHhcCChhhHHHHhcccCCCchHHhHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSHRDVIVRNLM 172 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 172 (477)
.+...|++++|..+.+...-||...|.++
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 34555555555555555555555555444
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.15 E-value=13 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..-|......+-..|++.+|.++|+..++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445555555555566666666666655544
No 279
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.11 E-value=16 Score=26.50 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 397 SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
..-|++.+....+.+|.+.+|+..|.++++-+...-.+...+|-.+++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 778999999999999999999999999999887665444556666544
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.70 E-value=31 Score=28.95 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=91.7
Q ss_pred hHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc---cHHHHHHHhhccCC
Q 042503 39 HFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY---TFAPLLKACLGVGD 115 (477)
Q Consensus 39 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~ 115 (477)
..+...+..|+.+.+..+++.-..++...-...+...+..|+.+ +++.+.+.|..++.. -.+.+. ..+..|+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~ 107 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALY-YAVDSGN 107 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCC
Confidence 34555667788888888887644332221122333345566654 444445556544322 223333 3344555
Q ss_pred chhHHHHHHHHHHhcccCcchH---HHHHHHHHHhcCChhhHHHHhcccCCC-chHHhHHHHHHHHhcCChHHHHHHHHh
Q 042503 116 LRVGQCVHGEIIRSGFERFGSI---RIGVVELYTSCGQMDDGMKVFDEMSHR-DVIVRNLMIHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (477)
.+ +.+.+++.|..++... +...+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.
T Consensus 108 ~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44 4445555566554332 134555566778877777777665442 221223444555667777766666655
Q ss_pred cCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 042503 192 MRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT 234 (477)
Q Consensus 192 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 234 (477)
-..+ +..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 184 gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 184 MTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 3322 211122222233344543 34445566676666543
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.18 E-value=29 Score=27.27 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR 296 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (477)
......+|..+...++-......|......+...|++.+|.++|+.-.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355555555555555344455555555555555555555555554433
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.56 E-value=48 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=10.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCC
Q 042503 210 SGRDSEALRLFHEMRDQAFELD 231 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~ 231 (477)
.++......+++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 4444444455555555554443
No 283
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=67.85 E-value=52 Score=27.32 Aligned_cols=49 Identities=4% Similarity=-0.198 Sum_probs=23.6
Q ss_pred cchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 042503 32 QSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGP 80 (477)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (477)
+++.+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|.
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 3444444555555555544333333333444555444445555555553
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.08 E-value=37 Score=29.66 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=47.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 169 RNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGR--DSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46788888999999999999999987642 234444455554433 356778888888777665544443333
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.99 E-value=29 Score=32.10 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH--HH-HHHHHHHHhcCCHHHHHHHHHhc
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE--HY-GCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
...++.+++.|...+.++.|..+..+..-.....++.. .| -.++..+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44566666667777777777777666641000011111 11 12344555666666666666655
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.11 E-value=40 Score=25.09 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhc
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK 292 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (477)
...+|..+...++-......|......+...|++.+|.++|+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555555433333344444444444444444444433
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.44 E-value=85 Score=31.98 Aligned_cols=105 Identities=6% Similarity=-0.163 Sum_probs=65.9
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCC----------------
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPN---------------- 401 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 401 (477)
++..|...|.++-+.++..- .+.++..--.+..+|...|++++|...|+++ ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 55666677777766543321 2334444345677888999999999999888 32111
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCCc----hHHHHHHHHHhcC
Q 042503 402 -------AAIWGSLLSSCRTHGHVELAEHAVKELINLE-PWNSG----NYVLLSNIYAEGG 450 (477)
Q Consensus 402 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~g 450 (477)
..-|..++..+-+.+-++-+.++.+.+++.- ++++. .|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1245667777778888888888888887643 44433 4555555554443
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.09 E-value=53 Score=26.12 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=12.3
Q ss_pred HHHHHhhcCChhHHHHHhccCC
Q 042503 40 FVSVCGTLNEIKYATKIFNQMR 61 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~ 61 (477)
.+...+..|+.+-+.-+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 4445555566666666665443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.49 E-value=34 Score=27.38 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
-..-|......+-..|++++|.++|+..++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34556666666677777777777777777655
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.40 E-value=30 Score=28.16 Aligned_cols=26 Identities=12% Similarity=-0.166 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+......+..+.+.|+-++|.++|=+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 44444555555556666665555443
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.38 E-value=43 Score=24.10 Aligned_cols=64 Identities=11% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGR--DSEALRLFHEMRDQAFELDEA 233 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 233 (477)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4556666667777777777777665422 223334444444432 355667777776666544433
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.74 E-value=36 Score=25.40 Aligned_cols=63 Identities=11% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCH
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGR--DSEALRLFHEMRDQAFELDE 232 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~ 232 (477)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...++-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4556666666677777777766655422 123333444444322 34566677776666544443
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.45 E-value=43 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCCCHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRPNAA 403 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 403 (477)
+..|.+.|.+++|.+++++. +..|+..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 34566777777777777776 4344443
No 294
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=57.12 E-value=42 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=17.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
..|.+.|.+++|.+++++..+..+.+...-.-|..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 45666677777777776666555444443333333
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.78 E-value=1.3e+02 Score=27.96 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=34.8
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc------HH-HHHHHhhccCCchhHHHHHHHHHHh
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT------FA-PLLKACLGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (477)
..+|.+++.|...+.++.|..+..+.. .+.+..+ |. .+.+...-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356777777777777777777776653 1211111 11 1234445566777777666666554
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.38 E-value=27 Score=28.37 Aligned_cols=21 Identities=14% Similarity=-0.027 Sum_probs=11.8
Q ss_pred HHHHHhcCCCchHHHHHHHHH
Q 042503 72 IKAYSLNGPSEEPVKLFALLK 92 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~ 92 (477)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555566666666655544
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.11 E-value=61 Score=25.74 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=54.4
Q ss_pred HHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc---HHHHHHHhhccCC
Q 042503 42 SVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT---FAPLLKACLGVGD 115 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~ 115 (477)
...++.|+.+....+++.-.. ++..-.+. +...++.|+. ++++.+.+.|..++... -...+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENVTL-LHWAAINNRI----DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHhCCH----HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 335667888888888876443 22222233 3344555654 44555555554333211 1122333344455
Q ss_pred chhHHHHHHHHHHhcccCcchH--HHHHHHHHHhcCChhhHHHHhcc
Q 042503 116 LRVGQCVHGEIIRSGFERFGSI--RIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
.+ +++.+++.|..++... -...+...+..|+.+-+..+++.
T Consensus 89 ~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 89 LS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 43 4455556666554321 11334444556776666666554
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.49 E-value=95 Score=25.65 Aligned_cols=62 Identities=10% Similarity=0.003 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
++..+-...+.++.+.|+....-.+...+. .|+ .-...+.++.+.|+. .+...+.++++..+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGDK-TLLPVLDTMLYKFD 265 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCCG-GGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCch-hhhHHHHHHHhcCC
Confidence 444444445555555554332222222222 122 122334455555553 45555555554433
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.99 E-value=61 Score=29.96 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 382 RSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
-...++.|...|..+ .+.|+. ..|+.|+......|+.-.|.-.|-+.+-...+.+.+...+...+.
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 334445555555554 223322 455555555555555555555555444443333444444444443
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.97 E-value=1.1e+02 Score=26.02 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=41.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHH
Q 042503 169 RNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGR--DSEALRLFHEMRDQAFELDEAT 234 (477)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 234 (477)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35677778888888888888888876622 233334444444332 3456677777777665554443
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.15 E-value=77 Score=23.95 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchH
Q 042503 82 EEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI 137 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (477)
+.+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 568899999999886544 44567777778888999999999999988887775443
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.76 E-value=92 Score=24.73 Aligned_cols=55 Identities=4% Similarity=-0.074 Sum_probs=27.3
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchh--HHHhHHHHHhhcCChhHHHHHhccC
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNL--ILAHFVSVCGTLNEIKYATKIFNQM 60 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 60 (477)
+...+..|+.+....+++.+.+.+..++.. .-...+...+..|+.+-+..+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444555666666666665555554333221 1122344444556666655555543
No 303
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=49.28 E-value=53 Score=23.98 Aligned_cols=67 Identities=13% Similarity=-0.085 Sum_probs=29.2
Q ss_pred HHHHHHHhcccCcchH--HHHHHHHHHhcCChhhHHHHhcccCCC---chHHhHHHHHHHHhcCChHHHHHHHH
Q 042503 122 VHGEIIRSGFERFGSI--RIGVVELYTSCGQMDDGMKVFDEMSHR---DVIVRNLMIHGFCKKGDVDKGLYLFR 190 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (477)
+.+.+++.|..++... -...+...+..|+.+-+.-+++. ..+ |..-. +-+...+..|+.+-+.-+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGL-TPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSC-CHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHh
Confidence 3344445554443221 12233344556666666666655 331 11111 22333345566555544443
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.26 E-value=1.9e+02 Score=27.89 Aligned_cols=80 Identities=6% Similarity=-0.010 Sum_probs=35.0
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHh---cCChhHHH
Q 042503 141 VVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGK---SGRDSEAL 217 (477)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~ 217 (477)
...++.-.|+++.|.+.+-.....+...+...+.. .|-+.....++..-......-+..|+..|.+ ..++..|+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 44555667888888887776622222222222222 2222211111111000012235566666654 46677777
Q ss_pred HHHHHH
Q 042503 218 RLFHEM 223 (477)
Q Consensus 218 ~~~~~m 223 (477)
++|--+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 776655
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.51 E-value=70 Score=29.01 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=35.1
Q ss_pred hhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCC
Q 042503 28 HKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (477)
.|++---..|..-.+.+...|++++|.++--..++ ++..+.+.+-..=...|+..--+..|..+.+.|
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34444444555556666666777777666655544 344444333333333444455555555555544
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.19 E-value=1.7e+02 Score=26.68 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=62.3
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|.....|..-.+.+...|++++|-++--..++ .++.+.+.+-..=...|+..-.+.+|..+.+.| +.+..--.-+.
T Consensus 358 pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~ 436 (494)
T 1bpo_A 358 AGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELC 436 (494)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHh
Confidence 44444445555666677777777766655544 233333333332233456666777777777766 44543333445
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMS 397 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (477)
+.-...|+.+..++.+.+= .+..+... .+.. +..+..-|..+|.+.+
T Consensus 437 r~vL~q~r~~llekWl~e~----KL~~SEeL----GDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 437 RPVLQQGRKQLLEKWLKED----KLECSEEL----GDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHTTCHHHHHHHHHHT----CSCCCHHH----HHHH-HHHCSHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHhcC----CccccHHh----Hhhh-hhcCHHHHHHHHHHcC
Confidence 5555566655555444432 23333321 1111 3335556666665554
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.03 E-value=1.1e+02 Score=24.52 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcch
Q 042503 81 SEEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGS 136 (477)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 136 (477)
.+.+.++|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4688889999988876543 4456677777788899999999988888877776433
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.81 E-value=57 Score=23.43 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCCHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGR--GELGVELYEQMIAKGVSPNKA 335 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 335 (477)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5678888888999999988888875522 222333333333322 345666777777666444433
No 309
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=46.36 E-value=1.4e+02 Score=25.54 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=32.7
Q ss_pred HhcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 394 RSMSIRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 394 ~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
...+++|.. -++...+....+.+++..|..+.+++++++|.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333666655 35677778889999999999999999999984
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.02 E-value=2.4e+02 Score=28.77 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=66.4
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHH
Q 042503 141 VVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEAL 217 (477)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 217 (477)
++..+...|.++-|.++...+.. +...-..+.++|...|++++|.+.|++.-.. +...... .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------GHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------hhhhh
Confidence 45555666666666666555554 2223345666677777777777777765420 0000000 00000
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchh----HHHHHHHHHHHhcC
Q 042503 218 RLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVV----SVGNALVDFYCKCG 282 (477)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 282 (477)
.++.... .......-|..++..+-+.+.++.+.++-+.+.+.-. +.+. ..|..+.++.+..|
T Consensus 885 ~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 1111000 0011223567777778888888888887777776533 3333 35566666665544
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.00 E-value=58 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=13.8
Q ss_pred HHhcCCCchHHHHHHHHHhCCCCCC
Q 042503 75 YSLNGPSEEPVKLFALLKNLGIWPD 99 (477)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~p~ 99 (477)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3455666666666665555544333
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.42 E-value=97 Score=24.48 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=35.9
Q ss_pred hhHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 042503 198 VSWNLMISSLG---KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA 247 (477)
Q Consensus 198 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 247 (477)
..+-.+++++. +-.+++.|+-++.+|++.|-.|....-..++-+.-..|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33444556654 468899999999999999988877666666666665554
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.36 E-value=1e+02 Score=24.40 Aligned_cols=51 Identities=6% Similarity=-0.056 Sum_probs=24.9
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchh--HHHhHHHHHhhcCChhHHHHHhccC
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNL--ILAHFVSVCGTLNEIKYATKIFNQM 60 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 60 (477)
+...+..|+.+ +.+.+++.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 33444455543 445555555443321 1123344455567777666666653
No 314
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.54 E-value=51 Score=24.05 Aligned_cols=48 Identities=6% Similarity=0.000 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChh
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIK 51 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 51 (477)
.++..+...+..-.|.++++.+.+.+...+..+....++.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 356666666667778888888877776666666666677777776543
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.24 E-value=1e+02 Score=22.61 Aligned_cols=17 Identities=18% Similarity=-0.208 Sum_probs=8.1
Q ss_pred CcccchHHHHHHHHHhC
Q 042503 246 GAVDIGQWIHSYAESSG 262 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~ 262 (477)
+..-.|.++++.+.+.+
T Consensus 35 ~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKF 51 (145)
T ss_dssp SSCCCHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 33444555555554443
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.39 E-value=73 Score=24.45 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=26.7
Q ss_pred HHhhcCChhHHHHHhccCC-C---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC
Q 042503 43 VCGTLNEIKYATKIFNQMR-N---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD 99 (477)
Q Consensus 43 ~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 99 (477)
..+..|+.+....+++.-. . .+..-++.|..+ ++.|+ .++++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCC
Confidence 3456677888887777554 2 233333344333 33444 344555555554443
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.70 E-value=72 Score=20.34 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHhCCCCCCcccHHHHHHHhhccC-CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCC
Q 042503 90 LLKNLGIWPDEYTFAPLLKACLGVG-DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQ 150 (477)
Q Consensus 90 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (477)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666665543 34445555444 556677787777776665566666556666666654
No 318
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.99 E-value=52 Score=23.62 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCCh
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEI 50 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 50 (477)
.++..+...+..-.|.++++.+.+.+...+..+....++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 35566666666777888888888777666676766777777777644
No 319
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.56 E-value=27 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.241 Sum_probs=16.4
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCC
Q 042503 448 EGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
..|+.+.|+..+-+|...+..+++|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 4566777777777776666665543
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.89 E-value=51 Score=24.57 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCCHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGR--GELGVELYEQMIAKGVSPNKA 335 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 335 (477)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5678888888999999988888876522 223333334433222 344666777777666444433
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.58 E-value=65 Score=23.31 Aligned_cols=34 Identities=0% Similarity=-0.052 Sum_probs=13.5
Q ss_pred chhHhHHHHHHHHhhcccchhHHHhHHHHHhhcC
Q 042503 15 RTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLN 48 (477)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 48 (477)
.-.|.++++.+.+.+...+..+....++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444444433333333333333333333
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.25 E-value=1.5e+02 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=34.0
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Q 042503 202 LMISSLG---KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 202 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (477)
.+|+++. +-.+++.|+-++.+|++.|-.|....-..++-+.-..|.-
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlA 58 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNA 58 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCC
Confidence 3455553 4678999999999999999887766666666666555543
No 323
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.00 E-value=75 Score=30.70 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 387 REAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 387 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
+.|.++.+-|+ ...............|++..|.++++.++..+|++..+....+.+|.+.|.-.+
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44555566553 233344455666789999999999999999999999999999999888775443
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.46 E-value=1.6e+02 Score=25.43 Aligned_cols=90 Identities=7% Similarity=-0.034 Sum_probs=45.7
Q ss_pred hHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 39 HFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 39 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
..+...+..|+.+.+..+++.-.. .|..-++.|..+ +..|+. ++++.+.+.|..++...-...+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 334555567888888888876443 222333344333 344544 444445555543433222223334455677
Q ss_pred chhHHHHHHHHHHhcccC
Q 042503 116 LRVGQCVHGEIIRSGFER 133 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~ 133 (477)
.+-+..+++.....|..+
T Consensus 97 ~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHhccccCCCH
Confidence 666666666544444443
No 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.80 E-value=1e+02 Score=25.03 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchhH-------HHhHHHHH--hhcCChhHHHHHhcc
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLI-------LAHFVSVC--GTLNEIKYATKIFNQ 59 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~--~~~~~~~~a~~~~~~ 59 (477)
.+...++.|+.+....+++.+.+.+..++... .+.|..+. ++.|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34455667888888888887777765554332 12222222 145666666555553
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.77 E-value=1.2e+02 Score=22.79 Aligned_cols=59 Identities=5% Similarity=0.021 Sum_probs=32.0
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHh--CCccchhHHHHHHHHHHHhcCC
Q 042503 223 MRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESS--GLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 223 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +. ..+..+.-.-++.+...|-
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~-~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDL-NVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGG-CCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCCC
Confidence 445566665543 23444555555666777777777665 43 3333333344555666654
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.57 E-value=1.7e+02 Score=23.00 Aligned_cols=17 Identities=0% Similarity=-0.183 Sum_probs=8.2
Q ss_pred HHhhcCChhHHHHHhcc
Q 042503 43 VCGTLNEIKYATKIFNQ 59 (477)
Q Consensus 43 ~~~~~~~~~~a~~~~~~ 59 (477)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555555555443
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.50 E-value=40 Score=20.23 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHhCCCCCCcccHHHHHHHh-hcc
Q 042503 81 SEEPVKLFALLKNLGIWPDEYTFAPLLKAC-LGV 113 (477)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~ 113 (477)
.++|.+.|.+|++..-.++.-||...++.+ +.-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367778887777654445566777777776 443
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.41 E-value=66 Score=23.80 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCc
Q 042503 21 IHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSE 82 (477)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 82 (477)
+.+.+.+.|..+++ .-..++..+...+..-.|.++++.+.+ .+..|-.-.++.+...|-..
T Consensus 14 ~~~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 14 LRMSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 33445556655543 334455566565666677777777642 34445555566666666543
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.11 E-value=83 Score=23.66 Aligned_cols=67 Identities=3% Similarity=-0.011 Sum_probs=38.8
Q ss_pred hhHhH-HHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhcCCCch
Q 042503 16 THLTQ-IHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN------PSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 16 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 83 (477)
+.+.. +-+.+.+.|...++ .-..+++.+...+..-.|.++++.+.+ .+..|--.-++.+...|-..+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 33443 33444556766654 345566777776777778888776532 334444455566777765543
No 331
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.60 E-value=2.3e+02 Score=24.26 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred HhcCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 394 RSMSIRPNAA--IWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 394 ~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
...++.|... ++...+....+.+++..|..+.++++++.|.
T Consensus 188 T~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 188 THSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3336666553 5677778888999999999999999999874
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.57 E-value=2e+02 Score=23.72 Aligned_cols=19 Identities=0% Similarity=-0.151 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHhcc
Q 042503 275 VDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~ 293 (477)
+...+..|+.+-+..+++.
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3334455555555555543
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.22 E-value=2.1e+02 Score=24.24 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=30.1
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCCCCcc----hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRNPSVL----LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD 99 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 99 (477)
+..+...++.|+++.+..+++.-..++.. -++.|..+ ++.|+. ++.+.+.+.|..|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~----~iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRE----DIVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCH----HHHHHHHHcCCchh
Confidence 33444556778888888887764443321 23344333 344543 44555556654443
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.18 E-value=1.5e+02 Score=21.90 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=9.0
Q ss_pred cCcccchHHHHHHHHHhC
Q 042503 245 LGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~ 262 (477)
.+..-.|.++++.+.+.+
T Consensus 39 ~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 39 SGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp CSSCBCHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 334445555555555444
No 335
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.85 E-value=71 Score=21.50 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=22.5
Q ss_pred ChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042503 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEA 216 (477)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 216 (477)
..++|.++++.++.....+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666677777766655554433
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.23 E-value=1.5e+02 Score=22.55 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=37.1
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhc-ccch--hHHHhHHHHHhhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCC
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKL-HQSN--LILAHFVSVCGTLNEIKYATKIFNQMRNP---SVLLFNSMIKAYSLNGP 80 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 80 (477)
...+..|+.+....++. .+. .++. ..-...+...++.|+.+-+..+++.-..+ +...++.+..+ +..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQ----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA-GAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHT----CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTC
T ss_pred HHHHHhccHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCC
Confidence 34455667665554443 221 2211 11223455566778888888888764442 22233333333 44555
Q ss_pred CchHHHH
Q 042503 81 SEEPVKL 87 (477)
Q Consensus 81 ~~~a~~~ 87 (477)
.+-+..+
T Consensus 85 ~~~~~~L 91 (201)
T 3hra_A 85 TEILAYM 91 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 337
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=32.17 E-value=2.4e+02 Score=24.13 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=72.2
Q ss_pred CCchHHHHHHHHHhC-C----CCCCcccHHHH---HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 80 PSEEPVKLFALLKNL-G----IWPDEYTFAPL---LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~-~----~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
+-++|..+|..+... + ..|+....... +..+.+..+ -++++.+.+.|+.|...+..-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 346788888877643 2 22333222211 122222222 35677777888888777777777777777778
Q ss_pred hhHHHHhcccCC--CchHHhH--HHHH----HHHhcCChHHHHHHHHh-cCCCChhhHHHHHHHHHhcCC
Q 042503 152 DDGMKVFDEMSH--RDVIVRN--LMIH----GFCKKGDVDKGLYLFRE-MRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 152 ~~A~~~~~~~~~--~~~~~~~--~l~~----~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 212 (477)
+.+.++++-+.. +....+- +++. ...+..+.++..+.+.. .+..+......++.-.....-
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 888888887654 2222221 1221 12334578888888887 443444445555544444433
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.82 E-value=72 Score=23.39 Aligned_cols=61 Identities=8% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCc
Q 042503 21 IHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSE 82 (477)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 82 (477)
+.+.+.+.|...++. -..++..+...+..-.|.++++.+.+ .+..|-...++.+...|-..
T Consensus 9 ~~~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 9 ALETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 334556667665543 33455555555666677777777643 34445555566667666543
No 339
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.14 E-value=94 Score=19.10 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.++.++..+.+..-.+.++..+.++++.+..+.+.|..-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4556666666666677777777777777766666666666655543
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.35 E-value=2e+02 Score=22.58 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=40.4
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccc-----chHHHHHHHHHhCC
Q 042503 200 WNLMISSLG---KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVD-----IGQWIHSYAESSGL 263 (477)
Q Consensus 200 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~ 263 (477)
+-.+++++. +-.+++.|+-++.+|++.| .|....-..++-+.-..|.-+ .|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334555554 5689999999999999999 766665566666665555432 33344444444554
No 341
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.09 E-value=1.8e+02 Score=23.74 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=11.8
Q ss_pred HhcCCCchHHHHHHHHHhCC
Q 042503 76 SLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~ 95 (477)
++.|+.+....+++...+.+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 45566666666666555444
No 342
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.99 E-value=72 Score=22.57 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHH
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKI 56 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 56 (477)
+...+.+++.+-|.++++..+..| +...|.+.+-.|-..=++|.+.++
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 333444444444444444444444 223333444444444444444443
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.70 E-value=78 Score=23.42 Aligned_cols=57 Identities=7% Similarity=0.076 Sum_probs=25.3
Q ss_pred HHHHhhcccchhHHHhHHHHHhhcC-ChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCC
Q 042503 24 HFLRHKLHQSNLILAHFVSVCGTLN-EIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 81 (477)
.+.+.|...++. -..++..+...+ ..-.|.++++.+.+ .+..|-..-++.+...|-.
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344455444432 223344444443 44455555555532 2333444444555555543
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.62 E-value=99 Score=19.66 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=6.0
Q ss_pred chHHHHHHHHHhcC
Q 042503 66 LLFNSMIKAYSLNG 79 (477)
Q Consensus 66 ~~~~~l~~~~~~~~ 79 (477)
.|-...+..+.+.|
T Consensus 53 ~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 53 ATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCC
Confidence 33344444444444
No 345
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.22 E-value=2.3e+02 Score=24.85 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRERS---VVSWNLMISSLGKSGRD--SEALRLFHEMRDQAFELDEATVVAVLPICAR 244 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 244 (477)
..++.-|...|+.++|.+.++++..|+ ......++......++. +.+-.++..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
..+.. .+.+.++..+.....+.
T Consensus 96 l~Dl~---------------iDiP~a~~~la~f~ar~ 117 (364)
T 3l6a_A 96 CPKLE---------------VDIPLVKSYLAQFAARA 117 (364)
T ss_dssp HHHHH---------------HHCTTHHHHHHHHHHHH
T ss_pred ChHhc---------------cccccHHHHHHHHHHHH
No 346
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.15 E-value=67 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=20.6
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccc
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQS 33 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 33 (477)
.+...+..|+.+....+++.+...|..++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 34556677888888888888887775543
No 347
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.48 E-value=39 Score=22.80 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=41.6
Q ss_pred hHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHH
Q 042503 19 TQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
..+++.+.+.|+- +..-...+-. .....+.+.|.++++.+++....+|..++.++...|+..-|.
T Consensus 24 ~~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 24 DQLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 3477777777743 2222222221 111257888999999988888888999998887666654443
No 348
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.92 E-value=1.1e+02 Score=20.29 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=40.6
Q ss_pred HhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 18 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
...+++.+.+.++- +..-...+-. .....++|..+++.+++....+|..++.++.+.+..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 44677777777743 2333333222 357788888899888888888888888888776653
No 349
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.59 E-value=2e+02 Score=24.78 Aligned_cols=87 Identities=7% Similarity=-0.019 Sum_probs=49.7
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchh--HHHhHHHHHhhcCChhHHHHHhccCCCCCc-chHHHHHHHHHhcCCC
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNL--ILAHFVSVCGTLNEIKYATKIFNQMRNPSV-LLFNSMIKAYSLNGPS 81 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 81 (477)
.|...+..|+++ +.+.+++.|..++.. .-...+...+..|+.+-+.-+++.-..++. .-++.|. ..+..|+.
T Consensus 23 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~-~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTD----EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH-LAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH-HHHHTTCH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH-HHHHcCCH
Confidence 345555667765 445555666544432 223455666778999998888887655333 2333333 34566776
Q ss_pred chHHHHHHHHHhCCC
Q 042503 82 EEPVKLFALLKNLGI 96 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~ 96 (477)
+-+..+++.....|.
T Consensus 98 ~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 98 DLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCC
Confidence 666666655443343
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.19 E-value=1.4e+02 Score=21.23 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 042503 304 AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 348 (477)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555556667778888888877766666666666666666555
No 351
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.88 E-value=3.3e+02 Score=24.09 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccc
Q 042503 275 VDFYCKCGILDTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK---ATFVGVLTCCAHAG 348 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~ 348 (477)
+...+..|+.+-+..+++.-... +....+.+. ..+..|+.+ +++.+.+.|..++. ...+. +...+..|
T Consensus 216 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~ 289 (437)
T 1n11_A 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEG 289 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcC
Confidence 44556678888777777654332 222233333 334455543 33444455544432 12222 33334556
Q ss_pred cHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCChHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPN---LEHYGCMVDVLGRSGCVREAYDLIRSMSIRPN---AAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~ 422 (477)
+.+-+..+++. |..++ ....+. +...+..|+.+-+.-+++.- ..++ ...... +......|+.+-+.
T Consensus 290 ~~~~~~~Ll~~-----g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~-L~~A~~~g~~~iv~ 361 (437)
T 1n11_A 290 HVPVADVLIKH-----GVMVDATTRMGYTP-LHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSP-LHQAAQQGHTDIVT 361 (437)
T ss_dssp CHHHHHHHHHH-----TCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCH-HHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhC-----CccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHCChHHHHH
Confidence 66655444432 22222 112222 23344567766555555543 2222 111222 23344667776555
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 423 HAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
-+++.-...+..+..-...+ ..-.+.|. .+..++++.....
T Consensus 362 ~Ll~~ga~~~~~~~~g~t~l-~~A~~~g~-~~~~~~l~~~~~~ 402 (437)
T 1n11_A 362 LLLKNGASPNEVSSDGTTPL-AIAKRLGY-ISVTDVLKVVTDE 402 (437)
T ss_dssp HHHHTTCCSCCCCSSSCCHH-HHHHHTTC-HHHHHHHHHHCCC
T ss_pred HHHHCcCCCCCCCCCCCCHH-HHHHHcCc-HHHHHHHHhcccc
Confidence 55543222222122222222 22234444 4566666665443
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.66 E-value=1.7e+02 Score=21.30 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
+-.|.++++.+.+.+...+..|.-.-+.
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~ 60 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLE 60 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHH
Confidence 3344444444444433334444333333
No 353
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.66 E-value=2.5e+02 Score=22.66 Aligned_cols=142 Identities=12% Similarity=0.031 Sum_probs=77.5
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchh---HHHhHHHHHhhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhc
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNL---ILAHFVSVCGTLNEIKYATKIFNQMRNP---SVLLFNSMIKAYSLN 78 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 78 (477)
.+...+..|+++ +.+.+++.|..++.. .-...+...+..|+.+-+.-+++.-..+ +..-++.|..+ +..
T Consensus 8 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIA 82 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHc
Confidence 455666778765 445555566444322 2234566677788988888888764442 22233333333 344
Q ss_pred CCCchHHHHHHHHHhCCCCCCcc---cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcch------------HHHHHHH
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEY---TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGS------------IRIGVVE 143 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~l~~ 143 (477)
|+ .++++.+.+.|..++.. ..+.+ ...+..|+. ++++.+++.|..++.. .-...+.
T Consensus 83 ~~----~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 83 GS----VKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp TC----HHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred CC----HHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 54 34556666666554432 22233 333445554 4555666666655432 1123444
Q ss_pred HHHhcCChhhHHHHhcc
Q 042503 144 LYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~ 160 (477)
..+..|+.+-+..+++.
T Consensus 154 ~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 55667888888777765
No 354
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.62 E-value=76 Score=25.15 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.+..|.+.|.+++|.+++++..+..|.+...-.-|..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~ 156 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLN 156 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4557899999999999999998765543333333333
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.50 E-value=2e+02 Score=20.98 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=40.4
Q ss_pred HHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc---HHHHHHHhhcc
Q 042503 41 VSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT---FAPLLKACLGV 113 (477)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~ 113 (477)
+...++.|+.+.+..+++.-.. .+..-++.|..+ +..|+ .++++.+.+.|..++... .+.+ ...+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYNR----VSVVEYLLQHGADVHAKDKGGLVPL-HNACSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-HHTTC----HHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-HHcCh----HHHHHHHHhcCCCCCccCCCCCCHH-HHHHHc
Confidence 3445566888888888774332 222223333333 34455 355555666665444322 2222 223344
Q ss_pred CCchhHHHHHHHHHHhcccCc
Q 042503 114 GDLRVGQCVHGEIIRSGFERF 134 (477)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~ 134 (477)
|+.+ +.+.+++.|..++
T Consensus 86 ~~~~----~v~~Ll~~g~~~~ 102 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVN 102 (165)
T ss_dssp TCHH----HHHHHHHTTCCTT
T ss_pred CcHH----HHHHHHhCCCCCC
Confidence 4443 4444455555543
No 356
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.38 E-value=1.9e+02 Score=21.31 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=36.7
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhccC-CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 89 ALLKNLGIWPDEYTFAPLLKACLGVG-DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 89 ~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-+..+...|-.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345566666554432 3344454454 5667888888887776666655555555566666543
No 357
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.13 E-value=2.5e+02 Score=25.96 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
|.+.......++.|...|.++... .|.+...||.|.-.....|+.-+|.-.|-+. ...|-..+...+...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 334444445678999999998843 3667789999998888889888888777766 557878888888776654
No 358
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.33 E-value=83 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=10.4
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~ 427 (477)
....+.+.|.+++|++..++
T Consensus 21 rAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 34445555555555555444
No 359
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.11 E-value=1.1e+02 Score=22.16 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=22.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444445556666666665555555555544444444444
No 360
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.01 E-value=80 Score=23.16 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCC
Q 042503 21 IHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 81 (477)
+.+.+.+.|..+++. -..++..+...+ .-.|.++++.+.+ .+..|--.-++.+...|-.
T Consensus 6 ~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 334455566655543 233444444445 5567777766543 2334444445566665544
No 361
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.94 E-value=54 Score=19.67 Aligned_cols=24 Identities=8% Similarity=0.002 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHhhhccCCCCCh
Q 042503 347 AGLVEKARELFASMTGLHSIVPNL 370 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~ 370 (477)
.-+++.|...|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457788888887776545556553
No 362
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.49 E-value=2.4e+02 Score=21.21 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=36.0
Q ss_pred HhcCCHHHHHHHHHhc--CC-CC--CHHHHHHHHH-H-----HHHcCChHHHHHHHHHHHh
Q 042503 381 GRSGCVREAYDLIRSM--SI-RP--NAAIWGSLLS-S-----CRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~--~~-~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 430 (477)
...|++-+|-+++++. .. .+ ....|..||. . ..+.|+...|..+++++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3458899998888888 21 33 3456666666 2 2467999999999999976
No 363
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.31 E-value=1.5e+02 Score=19.03 Aligned_cols=36 Identities=6% Similarity=0.129 Sum_probs=17.0
Q ss_pred HHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHH
Q 042503 55 KIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFAL 90 (477)
Q Consensus 55 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (477)
.++++++. |++.+|+-+...+-+..-..++..+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444443 5555565555544444334444444433
No 364
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.10 E-value=3.4e+02 Score=22.89 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=23.1
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCc
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD 165 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (477)
++.+.+++.|..++..+ .+...++.|+.+-+.-+++.=-++|
T Consensus 287 ~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 287 KIAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 34555566777766553 3334456677766666655443333
No 365
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.62 E-value=1.4e+02 Score=25.80 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCC-chHHhH---HHHHHH---HhcCChHHHHHHHHhcC
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHR-DVIVRN---LMIHGF---CKKGDVDKGLYLFREMR 193 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~l~~~~---~~~~~~~~a~~~~~~~~ 193 (477)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++-+... +...+. +++..+ ....++++..+.+..++
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666777777777777777777777777777788887776542 111111 111111 12346777888887765
Q ss_pred C
Q 042503 194 E 194 (477)
Q Consensus 194 ~ 194 (477)
.
T Consensus 294 ~ 294 (334)
T 2qq8_A 294 E 294 (334)
T ss_dssp T
T ss_pred C
Confidence 4
No 366
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.43 E-value=4.4e+02 Score=23.93 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc--------cHHH-HHHHhhccCCchhHHHHHHHHHHh
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY--------TFAP-LLKACLGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--------~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 129 (477)
..|.+.+.|.+.+++..+..+++.+...+..|+.. +|.. +.+.+...+++.+|.+-+.+..+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 35678899999999999999999998776533333 3333 335556788999999888888776
No 367
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.58 E-value=5.5e+02 Score=24.74 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcC---------------C-hHHHHHHHHHHHh-------cCC
Q 042503 378 DVLGRSGCVREAYDLIRSMSIRPN-AAIWGSLLSSCRTHG---------------H-VELAEHAVKELIN-------LEP 433 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~---------------~-~~~a~~~~~~~~~-------~~p 433 (477)
.-+...|++++|+.+|.-.+.... ..+.+.++.-....- + ...|.++.+.... ..+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 355678899999999888752211 134444443332211 1 1233444333221 112
Q ss_pred CCCchHHHHHHH-----HHhcCCchHHHHHHHHH
Q 042503 434 WNSGNYVLLSNI-----YAEGGRWDDAETLRMWM 462 (477)
Q Consensus 434 ~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 462 (477)
.+..++..|... +.+.|+|++|++.++++
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 233445444433 47899999999888875
No 368
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.28 E-value=3.8e+02 Score=22.74 Aligned_cols=27 Identities=7% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCc
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRD 165 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (477)
..++.-|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 456777777788888888888876654
No 369
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.86 E-value=1.7e+02 Score=24.02 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhcccCcchH--HHHHHHHHHhcCChhhHHHHhcccCCC---chHHhHHHHHHHH
Q 042503 103 FAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI--RIGVVELYTSCGQMDDGMKVFDEMSHR---DVIVRNLMIHGFC 177 (477)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 177 (477)
++.+..++........-.++++.+++.|..++... -.+.+...+..|+.+-+..+++.-.++ |..-++ -+...+
T Consensus 146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~T-pLh~A~ 224 (276)
T 4hbd_A 146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST-ALMCAC 224 (276)
T ss_dssp CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHH
Confidence 33444443333333344445555555543332211 112233334455555555555443221 111111 222334
Q ss_pred hcCChHHHHHHHH
Q 042503 178 KKGDVDKGLYLFR 190 (477)
Q Consensus 178 ~~~~~~~a~~~~~ 190 (477)
..|+.+-+.-+++
T Consensus 225 ~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 225 EHGHKEIAGLLLA 237 (276)
T ss_dssp HHTCHHHHHHHHT
T ss_pred HCCCHHHHHHHHh
Confidence 4566555555554
No 370
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.26 E-value=4.2e+02 Score=22.81 Aligned_cols=192 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
..++.-|...|+.++|...++++..|.....-.-...-....+-+...+..-.+...-......+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf------- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGL------- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-------
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNAAIWGSLLSSCRTHGHVELAEHAVK 426 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 426 (477)
.++++.+....---|....+-.-+-+.+-....-....++..+ ........+..++..+.+....+.+..+|+
T Consensus 88 --~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 88 --YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp --HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred --HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHH
Q ss_pred HH----HhcCCCCCchHHHHHHHHHhcC-----------------CchHHHHHHHHHHhCCCccCCCCccC
Q 042503 427 EL----INLEPWNSGNYVLLSNIYAEGG-----------------RWDDAETLRMWMRENNVKKSPGQSLI 476 (477)
Q Consensus 427 ~~----~~~~p~~~~~~~~l~~~~~~~g-----------------~~~~A~~~~~~~~~~~~~~~~~~s~~ 476 (477)
+. .+.-|.+.+ +...+...| ...+..+-+.++++.+..++.-..||
T Consensus 166 ~s~l~l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i 232 (339)
T 1ug3_A 166 EAGLSWKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWI 232 (339)
T ss_dssp HTTCCGGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHH
No 371
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.22 E-value=2.3e+02 Score=19.78 Aligned_cols=74 Identities=8% Similarity=0.038 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPNAAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
.+.+|..-+++..+ . ++|......++..+... ++-|+++.+.. |. .+.++...+....+.|-.+.. +.
T Consensus 3 ~~~~al~~L~e~~~-~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVERLKAALE-R--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHHHHHHHHS-S--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 45666666666653 2 44555555555554432 44444444433 44 244455556666666655444 44
Q ss_pred HHHHHh
Q 042503 425 VKELIN 430 (477)
Q Consensus 425 ~~~~~~ 430 (477)
|..|++
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
Done!