BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042504
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 34/271 (12%)
Query: 37 NLPTEFIWPNLELAQ------EELRE-----PLIDLHGFLSGDERATAEAIDLVRGACVN 85
++P E+I P EL EE +E P IDL S DE+ I+ ++ A ++
Sbjct: 16 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75
Query: 86 HGFFQVINHGVDASLLKAAIEETDSIFKLPLERK--LSIPIKTGLAKGYAGAHAGRFTTN 143
G +INHG+ A L++ + + F L +E K + TG +GY A +
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135
Query: 144 LPWKETFTFNYHEKDAEPLFV------DYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLF 197
L W++ F + ++ L + DY ++ +Y + + L+ +F
Sbjct: 136 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVF 183
Query: 198 ELLAMSLGVDRKHYKK---FFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE 254
+ L++ LG++ +K E+ ++ N+YP C L LG H D ++LT +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243
Query: 255 QVEGLEVFSNNKWQTIRPRSDALVINIGDTF 285
V GL++F KW T + D++V++IGDT
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTL 274
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 34/271 (12%)
Query: 37 NLPTEFIWPNLELAQ------EELRE-----PLIDLHGFLSGDERATAEAIDLVRGACVN 85
++P E+I P EL EE +E P IDL S DE+ I+ ++ A ++
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 86 HGFFQVINHGVDASLLKAAIEETDSIFKLPLERK--LSIPIKTGLAKGYAGAHAGRFTTN 143
G +INHG+ A L++ + + F L +E K + TG +GY A +
Sbjct: 77 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 144 LPWKETFTFNYHEKDAEPLFV------DYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLF 197
L W++ F + ++ L + DY ++ +Y + + L+ +F
Sbjct: 137 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVF 184
Query: 198 ELLAMSLGVDRKHYKK---FFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE 254
+ L++ LG++ +K E+ ++ N+YP C L LG H D ++LT +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 255 QVEGLEVFSNNKWQTIRPRSDALVINIGDTF 285
V GL++F KW T + D++V++IGDT
Sbjct: 245 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTL 275
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 34/271 (12%)
Query: 37 NLPTEFIWPNLELAQ------EELRE-----PLIDLHGFLSGDERATAEAIDLVRGACVN 85
++P E+I P EL EE +E P IDL S DE+ I+ ++ A ++
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 86 HGFFQVINHGVDASLLKAAIEETDSIFKLPLERK--LSIPIKTGLAKGYAGAHAGRFTTN 143
G +INHG+ A L + + + F L +E K + TG +GY A +
Sbjct: 77 WGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 144 LPWKETFTFNYHEKDAEPLFV------DYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLF 197
L W++ F + ++ L + DY ++ +Y + + L+ +F
Sbjct: 137 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVF 184
Query: 198 ELLAMSLGVDRKHYKK---FFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE 254
+ L++ LG++ +K E+ + N+YP C L LG H D ++LT +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 255 QVEGLEVFSNNKWQTIRPRSDALVINIGDTF 285
V GL++F KW T + D++V +IGDT
Sbjct: 245 XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTL 275
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 26/236 (11%)
Query: 57 PLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPL 116
P+I L ++G ERA + ++ AC N GFF+++NHG+ + + T +K
Sbjct: 5 PIISLDK-VNGVERAAT--XEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 117 ERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFE 176
E++ + + K G A T+ W+ TF + L + V D E
Sbjct: 62 EQRFKELVAS---KALEGVQAE--VTDXDWESTFFLKH-------LPISNISEVPDLD-E 108
Query: 177 RKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNF------YPPC 230
R + + + + + KL+ L +LL +LG+++ + K F Y NF YPPC
Sbjct: 109 EYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF---YGSKGPNFGTKVSNYPPC 165
Query: 231 KNSALTLGTGPHYDPNSLTILHQ-EQVEGLEVFSNNKWQTIRPRSDALVINIGDTF 285
L G H D + +L Q ++V GL++ + +W + P ++V+N+GD
Sbjct: 166 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQL 221
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 86 HGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYA--GAHAGRFTTN 143
+GF + ++ +D + + AA++ + F LP+E K G A+GY G + +
Sbjct: 33 YGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADH 92
Query: 144 LPWKETF----------TFNYHEKD-AEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKL 192
KE + F H D P + FK W+Y ++
Sbjct: 93 YDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFK-------HDVSWLYN----SLDGX 141
Query: 193 SGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILH 252
G + E +A L ++R +K +DG S++R YPP A + G H D N++T+L
Sbjct: 142 GGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 253 QEQVEGLEVFS-NNKWQTIRPRSDALVINIGDTF 285
+ GLEV + +W I P LVINIGD
Sbjct: 202 GAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXL 235
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 57 PLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPL 116
P ID+ D+ A + A + GFF +NHG++ L +E +
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITP 67
Query: 117 ERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEP--------------- 161
E K + I+ + AG + + K +F Y + P
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 162 LFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYS- 220
++ D K QDF ++Y ++ LS L + A++LG + + + F+ +
Sbjct: 128 VWPDETKHPGFQDFA------EQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 221 ----IVRFNFYPPCKNSAL-TLGTGP------HYDPNSLTILHQEQVEGLEVFSNNKWQT 269
++R+ + P +A+ T G H D + +T+L+Q V+ L+V + +Q
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 270 IRPRSDALVINIG 282
I +IN G
Sbjct: 242 IEADDTGYLINCG 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 57 PLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPL 116
P ID+ D+ A + A + GFF +NHG++ L +E +
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITP 67
Query: 117 ERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEP--------------- 161
E K + I+ + AG + + K +F Y + P
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 162 LFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYS- 220
++ D K QDF ++Y ++ LS L + A++LG + + + F+ +
Sbjct: 128 VWPDETKHPGFQDFA------EQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 221 ----IVRFNFYPPCKNSAL-TLGTGP------HYDPNSLTILHQEQVEGLEVFSNNKWQT 269
++R+ + P +A+ T G H D + +T+L+Q V+ L+V + +Q
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 270 IRPRSDALVINIG 282
I +IN G
Sbjct: 242 IEADDTGYLINCG 254
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 16/59 (27%)
Query: 205 GVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLT--ILHQEQVEGLEV 261
GVD K ++K+FE ++ T G G HY P+ LT HQ G V
Sbjct: 425 GVDPKEFQKYFE--------------QHGRFTAGVGTHYAPSLLTGQAKHQALASGFTV 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,233,260
Number of Sequences: 62578
Number of extensions: 398104
Number of successful extensions: 772
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 10
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)