Query 042504
Match_columns 286
No_of_seqs 245 out of 1394
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02758 oxidoreductase, 2OG-F 100.0 6.6E-65 1.4E-69 467.7 24.6 255 26-286 16-279 (361)
2 PLN02276 gibberellin 20-oxidas 100.0 1.2E-64 2.6E-69 466.3 25.7 260 27-286 9-272 (361)
3 PLN02216 protein SRG1 100.0 3.5E-64 7.6E-69 462.2 25.3 252 27-286 17-277 (357)
4 PLN02947 oxidoreductase 100.0 3.9E-63 8.5E-68 456.9 24.9 252 25-286 26-291 (374)
5 PLN02393 leucoanthocyanidin di 100.0 8E-63 1.7E-67 454.3 24.6 255 26-286 14-280 (362)
6 PLN03178 leucoanthocyanidin di 100.0 5.4E-63 1.2E-67 455.4 22.6 254 27-286 8-277 (360)
7 PLN02254 gibberellin 3-beta-di 100.0 2.5E-62 5.5E-67 449.4 23.1 237 34-286 26-277 (358)
8 PLN02515 naringenin,2-oxogluta 100.0 7.6E-62 1.7E-66 446.3 24.1 248 32-286 9-263 (358)
9 PLN00417 oxidoreductase, 2OG-F 100.0 1.7E-61 3.7E-66 443.0 24.7 252 27-286 9-270 (348)
10 PLN02912 oxidoreductase, 2OG-F 100.0 1.7E-61 3.8E-66 443.0 23.5 250 25-286 6-263 (348)
11 PLN02904 oxidoreductase 100.0 5.3E-61 1.1E-65 440.9 24.7 257 20-286 9-274 (357)
12 KOG0143 Iron/ascorbate family 100.0 6.2E-60 1.3E-64 427.3 24.3 228 52-286 14-244 (322)
13 PLN02639 oxidoreductase, 2OG-F 100.0 6.5E-60 1.4E-64 431.6 23.7 245 28-286 3-257 (337)
14 PLN02750 oxidoreductase, 2OG-F 100.0 1.1E-59 2.4E-64 431.3 23.5 241 36-286 2-261 (345)
15 PLN02704 flavonol synthase 100.0 1.5E-59 3.3E-64 428.8 22.2 248 27-286 6-265 (335)
16 PTZ00273 oxidase reductase; Pr 100.0 1.9E-58 4.1E-63 419.9 22.4 229 53-286 3-245 (320)
17 COG3491 PcbC Isopenicillin N s 100.0 2.2E-58 4.8E-63 401.2 19.4 228 53-286 3-241 (322)
18 PLN02997 flavonol synthase 100.0 1E-57 2.2E-62 414.2 23.0 219 52-286 29-249 (325)
19 PLN02299 1-aminocyclopropane-1 100.0 8E-57 1.7E-61 408.0 21.2 219 52-286 3-225 (321)
20 PLN02485 oxidoreductase 100.0 9.1E-57 2E-61 410.1 21.5 229 53-286 5-256 (329)
21 PLN03002 oxidoreductase, 2OG-F 100.0 2.1E-56 4.5E-61 407.5 21.1 224 53-286 12-254 (332)
22 PLN02984 oxidoreductase, 2OG-F 100.0 9.8E-56 2.1E-60 403.1 23.5 219 53-286 36-266 (341)
23 PLN02156 gibberellin 2-beta-di 100.0 3E-55 6.4E-60 399.1 23.0 229 33-286 12-247 (335)
24 PLN02403 aminocyclopropanecarb 100.0 4E-55 8.8E-60 393.4 21.8 215 55-286 2-221 (303)
25 PLN02365 2-oxoglutarate-depend 100.0 2.5E-53 5.5E-58 382.4 21.3 211 54-286 4-218 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 8.8E-45 1.9E-49 320.1 15.4 177 104-286 1-182 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 1.7E-26 3.8E-31 179.8 7.7 108 56-168 1-115 (116)
28 PLN03176 flavanone-3-hydroxyla 99.9 8.8E-24 1.9E-28 164.9 10.5 100 36-136 13-117 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.6 2.7E-15 5.8E-20 113.1 4.3 64 220-286 2-67 (98)
30 smart00702 P4Hc Prolyl 4-hydro 90.2 2 4.4E-05 35.3 8.3 79 192-281 60-152 (178)
31 PF13640 2OG-FeII_Oxy_3: 2OG-F 89.9 0.3 6.4E-06 36.1 2.7 55 222-282 1-76 (100)
32 PRK05467 Fe(II)-dependent oxyg 78.5 16 0.00036 31.6 8.6 56 221-283 81-156 (226)
33 PLN00052 prolyl 4-hydroxylase; 64.1 29 0.00064 31.6 7.2 53 221-279 133-217 (310)
34 PRK08130 putative aldolase; Va 64.0 9.9 0.00021 32.4 4.0 37 55-97 127-163 (213)
35 PRK08333 L-fuculose phosphate 63.8 10 0.00022 31.6 3.9 37 55-97 120-156 (184)
36 PF07350 DUF1479: Protein of u 62.5 6 0.00013 37.4 2.5 55 52-113 46-100 (416)
37 COG2140 Thermophilic glucose-6 59.5 21 0.00045 30.5 5.0 60 220-284 90-152 (209)
38 PRK15401 alpha-ketoglutarate-d 56.5 1.3E+02 0.0028 25.8 12.7 57 221-284 117-183 (213)
39 PRK06755 hypothetical protein; 53.7 13 0.00028 31.8 2.9 37 55-97 136-172 (209)
40 PRK05874 L-fuculose-phosphate 52.2 20 0.00043 30.8 3.9 37 55-97 127-163 (217)
41 cd00491 4Oxalocrotonate_Tautom 49.6 22 0.00048 23.0 3.0 29 57-85 1-29 (58)
42 TIGR02409 carnitine_bodg gamma 49.1 23 0.00051 32.8 4.1 53 52-112 106-158 (366)
43 PRK02289 4-oxalocrotonate taut 47.0 27 0.00059 23.1 3.1 29 57-85 2-30 (60)
44 cd00379 Ribosomal_L10_P0 Ribos 45.1 55 0.0012 26.0 5.2 39 72-110 3-42 (155)
45 COG1402 Uncharacterized protei 44.8 84 0.0018 27.7 6.6 44 70-113 86-132 (250)
46 PRK08087 L-fuculose phosphate 44.4 33 0.00071 29.3 4.0 37 55-97 122-158 (215)
47 PF00596 Aldolase_II: Class II 43.3 16 0.00035 30.1 1.9 37 54-96 122-159 (184)
48 PRK06833 L-fuculose phosphate 42.8 30 0.00065 29.5 3.5 37 55-97 124-160 (214)
49 PF03668 ATP_bind_2: P-loop AT 42.5 31 0.00068 30.9 3.6 29 79-109 17-45 (284)
50 PF13532 2OG-FeII_Oxy_2: 2OG-F 42.4 82 0.0018 25.8 6.1 58 220-284 97-164 (194)
51 PRK08660 L-fuculose phosphate 41.8 39 0.00084 27.9 4.0 35 55-96 115-149 (181)
52 PF06560 GPI: Glucose-6-phosph 40.8 51 0.0011 27.6 4.5 37 247-284 93-136 (182)
53 PRK02220 4-oxalocrotonate taut 40.6 36 0.00079 22.3 3.0 29 57-85 2-30 (61)
54 KOG0256 1-aminocyclopropane-1- 40.4 76 0.0016 30.1 5.9 56 58-113 392-460 (471)
55 PRK03634 rhamnulose-1-phosphat 40.3 37 0.00081 30.2 3.8 37 55-97 179-215 (274)
56 cd00398 Aldolase_II Class II A 40.0 27 0.00058 29.6 2.8 40 54-97 121-160 (209)
57 PF01361 Tautomerase: Tautomer 39.3 28 0.0006 22.9 2.2 29 57-85 1-29 (60)
58 cd05797 Ribosomal_L10 Ribosoma 38.7 1.1E+02 0.0024 24.5 6.1 40 71-110 4-44 (157)
59 TIGR02624 rhamnu_1P_ald rhamnu 38.1 40 0.00087 30.0 3.7 37 55-97 177-213 (270)
60 TIGR00013 taut 4-oxalocrotonat 37.8 43 0.00093 22.1 3.0 29 57-85 1-30 (63)
61 TIGR00568 alkb DNA alkylation 37.1 1.2E+02 0.0025 25.0 6.0 59 220-284 95-162 (169)
62 PRK06661 hypothetical protein; 36.0 44 0.00096 28.9 3.5 39 55-97 123-161 (231)
63 PRK00745 4-oxalocrotonate taut 35.3 52 0.0011 21.6 3.1 29 57-85 2-30 (62)
64 PRK00099 rplJ 50S ribosomal pr 34.9 1.4E+02 0.0029 24.4 6.2 40 71-110 5-45 (172)
65 PRK06357 hypothetical protein; 34.6 60 0.0013 27.8 4.1 37 55-97 130-172 (216)
66 PF11243 DUF3045: Protein of u 34.5 33 0.00071 24.4 2.0 20 78-97 37-56 (89)
67 TIGR01086 fucA L-fuculose phos 33.9 47 0.001 28.3 3.4 36 55-96 121-156 (214)
68 cd05796 Ribosomal_P0_like Ribo 33.6 91 0.002 25.4 4.8 39 72-110 3-42 (163)
69 PF06820 Phage_fiber_C: Putati 33.5 32 0.00069 23.0 1.7 36 236-271 15-61 (64)
70 COG3384 Aromatic ring-opening 32.8 1E+02 0.0022 27.4 5.2 43 51-95 128-170 (268)
71 PF00046 Homeobox: Homeobox do 32.2 60 0.0013 20.8 3.0 39 177-215 10-48 (57)
72 PF00466 Ribosomal_L10: Riboso 31.7 2E+02 0.0044 20.8 6.2 42 70-111 4-46 (100)
73 cd05795 Ribosomal_P0_L10e Ribo 31.4 1.1E+02 0.0024 25.1 5.1 39 72-110 3-42 (175)
74 PRK06557 L-ribulose-5-phosphat 31.4 56 0.0012 27.9 3.4 37 55-97 130-168 (221)
75 COG2450 Uncharacterized conser 31.3 72 0.0016 24.9 3.6 37 54-91 64-100 (124)
76 KOG2631 Class II aldolase/addu 30.6 1.5E+02 0.0032 25.4 5.6 62 52-120 153-222 (238)
77 TIGR02410 carnitine_TMLD trime 30.1 71 0.0015 29.6 4.1 52 54-112 99-150 (362)
78 PRK04019 rplP0 acidic ribosoma 30.1 1.5E+02 0.0032 27.2 6.1 41 70-110 6-47 (330)
79 PRK01964 4-oxalocrotonate taut 29.2 70 0.0015 21.2 3.0 29 57-85 2-30 (64)
80 PRK05834 hypothetical protein; 28.6 54 0.0012 27.6 2.8 38 55-96 121-160 (194)
81 PF04914 DltD_C: DltD C-termin 27.7 77 0.0017 24.9 3.3 25 68-93 70-94 (130)
82 PF10055 DUF2292: Uncharacteri 26.6 49 0.0011 20.1 1.6 19 243-262 13-31 (38)
83 PRK08193 araD L-ribulose-5-pho 26.3 87 0.0019 27.0 3.7 43 55-97 124-173 (231)
84 PRK06754 mtnB methylthioribulo 26.2 61 0.0013 27.5 2.7 35 55-96 137-172 (208)
85 PF01471 PG_binding_1: Putativ 26.1 62 0.0013 20.8 2.2 40 76-115 5-44 (57)
86 COG1741 Pirin-related protein 25.9 1.3E+02 0.0027 27.0 4.7 33 233-265 53-91 (276)
87 COG3113 Predicted NTP binding 25.5 1.4E+02 0.003 22.3 4.1 45 55-101 40-84 (99)
88 PLN02433 uroporphyrinogen deca 25.5 1.8E+02 0.0039 26.7 5.9 47 66-112 288-338 (345)
89 COG0244 RplJ Ribosomal protein 24.8 2.5E+02 0.0054 23.2 6.0 41 70-110 6-47 (175)
90 TIGR00370 conserved hypothetic 24.5 2.2E+02 0.0048 24.1 5.8 47 233-285 150-199 (202)
91 KOG4513 Phosphoglycerate mutas 24.1 77 0.0017 29.7 3.0 29 70-98 432-462 (531)
92 COG1660 Predicted P-loop-conta 24.1 95 0.0021 27.7 3.5 28 80-109 18-45 (286)
93 PRK09553 tauD taurine dioxygen 23.9 1.8E+02 0.0038 25.7 5.4 52 54-114 14-65 (277)
94 PF03460 NIR_SIR_ferr: Nitrite 23.9 90 0.002 21.0 2.8 36 75-110 25-68 (69)
95 PRK09220 methylthioribulose-1- 23.4 77 0.0017 26.8 2.8 24 73-96 145-171 (204)
96 PRK15331 chaperone protein Sic 22.2 81 0.0017 25.9 2.5 43 70-113 7-49 (165)
97 cd00086 homeodomain Homeodomai 22.0 1.2E+02 0.0025 19.3 2.9 40 177-216 10-49 (59)
98 PF12851 Tet_JBP: Oxygenase do 21.5 4.6E+02 0.0099 21.5 8.6 48 237-284 85-144 (171)
99 TIGR03328 salvage_mtnB methylt 21.4 96 0.0021 25.9 3.0 36 55-97 126-164 (193)
100 TIGR01565 homeo_ZF_HD homeobox 20.9 65 0.0014 21.5 1.5 37 179-215 13-53 (58)
101 smart00460 TGc Transglutaminas 20.7 94 0.002 20.4 2.3 16 259-274 53-68 (68)
102 PF08699 DUF1785: Domain of un 20.6 88 0.0019 20.2 2.0 24 257-281 19-42 (52)
103 PF00586 AIRS: AIR synthase re 20.4 1.4E+02 0.0029 21.5 3.3 27 68-94 69-95 (96)
104 PF08823 PG_binding_2: Putativ 20.3 1.3E+02 0.0028 21.1 3.0 34 74-107 16-49 (74)
No 1
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.6e-65 Score=467.66 Aligned_cols=255 Identities=31% Similarity=0.523 Sum_probs=226.9
Q ss_pred eehhhhhccCCCCCCCccCCCCcc-C-c-----CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCH
Q 042504 26 VFDYHKLQKQANLPTEFIWPNLEL-A-Q-----EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDA 98 (286)
Q Consensus 26 ~~~~~~~~~~~~iP~~~i~p~~~~-~-~-----~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~ 98 (286)
.++.|+++|.++||.+|++|.+++ . . ...+||||||+.+.+++..++++++++|++||++||||||+||||+.
T Consensus 16 ~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~ 95 (361)
T PLN02758 16 DVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIEL 95 (361)
T ss_pred cHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCH
Confidence 368999999999999999999877 2 1 34589999999998777777778899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHH
Q 042504 99 SLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERK 178 (286)
Q Consensus 99 ~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~f 178 (286)
++++++++.+++||+||.|+|+++...++..+||+........+..||+|.|.++..|.. ....+.||.. .++|
T Consensus 96 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~WP~~-----~~~f 169 (361)
T PLN02758 96 ELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHF-IRNPKLWPTK-----PARF 169 (361)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCcc-ccccccCccc-----cHHH
Confidence 999999999999999999999999876556789976544333566799999998766543 2346778864 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCC--C
Q 042504 179 RWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQ--V 256 (286)
Q Consensus 179 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~--v 256 (286)
|+++++|+++|++|+.+||++|+++||+++++|.+.+....+.||+||||+|+.++..+|+++|||+|+||||+||+ +
T Consensus 170 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v 249 (361)
T PLN02758 170 SETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSC 249 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCC
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999974 8
Q ss_pred CceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 257 EGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 257 ~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+||||+++|+|++|+|+||++|||+||+||
T Consensus 250 ~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~ 279 (361)
T PLN02758 250 VGLQILKDNTWVPVHPVPNALVINIGDTLE 279 (361)
T ss_pred CCeeeeeCCEEEeCCCCCCeEEEEccchhh
Confidence 999999999999999999999999999996
No 2
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1.2e-64 Score=466.28 Aligned_cols=260 Identities=62% Similarity=1.063 Sum_probs=226.9
Q ss_pred ehhhhhccCCCCCCCccCCCCcc-C--cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHH
Q 042504 27 FDYHKLQKQANLPTEFIWPNLEL-A--QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKA 103 (286)
Q Consensus 27 ~~~~~~~~~~~iP~~~i~p~~~~-~--~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~ 103 (286)
.+..+....++||..|++|.+++ . ....+||||||+.+.++++++|++++++|++||++||||||+||||+.+++++
T Consensus 9 ~~~~~~~~~~~vp~~~~~~~~~~p~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~ 88 (361)
T PLN02276 9 FDASVLQKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRA 88 (361)
T ss_pred echHhhcCCCCCCHHhcCCccccCCCCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHH
Confidence 34444444568999999999886 2 24468999999999887888888999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCC-ccchhccccccCCcchhHHHHHH
Q 042504 104 AIEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDA-EPLFVDYFKSVFGQDFERKRWIY 182 (286)
Q Consensus 104 ~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~-~~~~~~wp~~~~~~~~~~fr~~~ 182 (286)
+++.+++||+||.|+|+++....+..+||.+...+...+..||+|.|.++..+... ......|+.+.||+++++||+++
T Consensus 89 ~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~ 168 (361)
T PLN02276 89 AHEYMDAFFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVY 168 (361)
T ss_pred HHHHHHHHHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHH
Confidence 99999999999999999987765568899887665555678999999998654321 11122455566777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCceEEE
Q 042504 183 QKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGLEVF 262 (286)
Q Consensus 183 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~ 262 (286)
++|+..|.+|+.+||++||++||+++++|.+++.++.+.||+||||+|+.++..+|+++|||+|+||||+||+++||||+
T Consensus 169 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~ 248 (361)
T PLN02276 169 QEYCEAMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVF 248 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEE
Confidence 99999999999999999999999999999999988889999999999999988999999999999999999999999999
Q ss_pred eCCeEEEeccCCCcEEEecCCCCC
Q 042504 263 SNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 263 ~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
++|+|++|+|+||++||||||+||
T Consensus 249 ~~g~Wi~V~p~pgalVVNiGD~L~ 272 (361)
T PLN02276 249 VDNKWRSVRPRPGALVVNIGDTFM 272 (361)
T ss_pred ECCEEEEcCCCCCeEEEEcHHHHH
Confidence 999999999999999999999986
No 3
>PLN02216 protein SRG1
Probab=100.00 E-value=3.5e-64 Score=462.23 Aligned_cols=252 Identities=27% Similarity=0.487 Sum_probs=220.1
Q ss_pred ehhhhhc-cCCCCCCCccCCCCcc-C-c--C--CCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHH
Q 042504 27 FDYHKLQ-KQANLPTEFIWPNLEL-A-Q--E--ELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDAS 99 (286)
Q Consensus 27 ~~~~~~~-~~~~iP~~~i~p~~~~-~-~--~--~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~ 99 (286)
++.++.+ +++.||.+||+|++++ . . . ..+||||||+.+.+++. +++++++|++||++||||||+||||+.+
T Consensus 17 ~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~--~~~~~~~l~~Ac~~~GFF~v~nHGI~~~ 94 (357)
T PLN02216 17 VQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA--MDSEVEKLDFACKEWGFFQLVNHGIDSS 94 (357)
T ss_pred HHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc--HHHHHHHHHHHHHHCcEEEEECCCCCHH
Confidence 6788776 8899999999999887 2 1 1 25899999999876553 3468899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHH
Q 042504 100 LLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKR 179 (286)
Q Consensus 100 l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr 179 (286)
+++++++.+++||+||.|+|+++....+..+||+........+..||+|.|.++..|.. ....+.||..+ +.||
T Consensus 95 li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~~WP~~p-----~~fr 168 (357)
T PLN02216 95 FLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVR-LRKPHLFPKLP-----LPFR 168 (357)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcc-cccchhcccch-----HHHH
Confidence 99999999999999999999999776556789976654434567899999988755543 34467788643 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcC-CcceeEEeecCCCCCCCCCccccccccCCceEEEec-CCCC
Q 042504 180 WIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFED-GYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQ-EQVE 257 (286)
Q Consensus 180 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q-d~v~ 257 (286)
+++++|+++|.+|+.+||++||++||+++++|.+++.+ ..+.||+||||||+.++.++|+++|||+|+||||+| ++++
T Consensus 169 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~ 248 (357)
T PLN02216 169 DTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVE 248 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCC
Confidence 99999999999999999999999999999999998875 457899999999999999999999999999999999 5799
Q ss_pred ceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 258 GLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 258 GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
||||+++|+|++|+|+||++||||||+||
T Consensus 249 GLQV~~~g~Wi~V~p~pgalvVNiGD~L~ 277 (357)
T PLN02216 249 GLQIKKDGKWVSVKPLPNALVVNVGDILE 277 (357)
T ss_pred ceeEEECCEEEECCCCCCeEEEEcchhhH
Confidence 99999999999999999999999999996
No 4
>PLN02947 oxidoreductase
Probab=100.00 E-value=3.9e-63 Score=456.88 Aligned_cols=252 Identities=27% Similarity=0.460 Sum_probs=217.8
Q ss_pred eeehhhhhccCCCCCCCccCCCCcc-C--c-------CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeC
Q 042504 25 IVFDYHKLQKQANLPTEFIWPNLEL-A--Q-------EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINH 94 (286)
Q Consensus 25 ~~~~~~~~~~~~~iP~~~i~p~~~~-~--~-------~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nh 94 (286)
..++.|+.+|+++||.+||+|++++ . . ...+||||||+.+.+ ..+.+++++|++||++||||||+||
T Consensus 26 ~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~---~~~~~~~~~l~~Ac~~~GFF~v~nH 102 (374)
T PLN02947 26 KGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG---SNRPHVLATLAAACREYGFFQVVNH 102 (374)
T ss_pred cCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC---ccHHHHHHHHHHHHHHCcEEEEEcC
Confidence 4578999999999999999998877 2 1 445899999999864 2366789999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCC-CCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCc
Q 042504 95 GVDASLLKAAIEETDSIFKLPLERKLSIPIKT-GLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQ 173 (286)
Q Consensus 95 Gi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~ 173 (286)
||+.++++++++.+++||+||.|+|+++.... ....||+.......++..+|+|.+.+...|.. ...+.||.++
T Consensus 103 GIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~--~~~~~WP~~~--- 177 (374)
T PLN02947 103 GVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLS--DVLPHWPSSP--- 177 (374)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcc--cccccCccch---
Confidence 99999999999999999999999999986532 23457765443333566799999887655533 2356788653
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEE
Q 042504 174 DFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVD---RKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTI 250 (286)
Q Consensus 174 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~---~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTl 250 (286)
++||+++++|+++|.+|+.+||++|+++||++ .++|.+.+....+.||+||||+|++++.++|+++|||+|+|||
T Consensus 178 --~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTl 255 (374)
T PLN02947 178 --ADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTL 255 (374)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEE
Confidence 78999999999999999999999999999996 4577777777788999999999999999999999999999999
Q ss_pred EecCCCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 251 LHQEQVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 251 L~qd~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
|+||+++||||+++|+|++|+|+||+|||||||+||
T Consensus 256 L~Qd~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 256 LLQDEVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred EEecCCCCeeEeECCEEEeCCCCCCeEEEEeCceee
Confidence 999999999999999999999999999999999997
No 5
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=8e-63 Score=454.29 Aligned_cols=255 Identities=29% Similarity=0.515 Sum_probs=222.5
Q ss_pred eehhhhhccCCCCCCCccCCCCcc-C-------cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 26 VFDYHKLQKQANLPTEFIWPNLEL-A-------QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 26 ~~~~~~~~~~~~iP~~~i~p~~~~-~-------~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.++.++.++..+||..||+|++++ . ....+||+|||+.+.++++.+|.+++++|++||++||||||+||||+
T Consensus 14 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~ 93 (362)
T PLN02393 14 RVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVR 93 (362)
T ss_pred hHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCC
Confidence 378888888999999999999877 2 14568999999999888877889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhH
Q 042504 98 ASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFER 177 (286)
Q Consensus 98 ~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~ 177 (286)
.++++++++.+++||+||.|+|+++......++||............||+|.|.++..+.. ....+.||.. .++
T Consensus 94 ~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~-~~~~n~wP~~-----~~~ 167 (362)
T PLN02393 94 PELMDRAREAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSS-LKDPNKWPSL-----PPS 167 (362)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeeecCcc-ccchhhCccc-----chH
Confidence 9999999999999999999999999876556789953322222356799999887654433 2346778864 378
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCC---cceeEEeecCCCCCCCCCccccccccCCceEEEec-
Q 042504 178 KRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDG---YSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQ- 253 (286)
Q Consensus 178 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~---~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q- 253 (286)
||+++++|+++|.+|+.+||++||++||+++++|.+++... .+.||++|||+|+.++.++|+++|||+|+||||+|
T Consensus 168 fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~ 247 (362)
T PLN02393 168 CRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPD 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeC
Confidence 99999999999999999999999999999999999988643 36899999999999888999999999999999998
Q ss_pred CCCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 254 EQVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 254 d~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
++++||||+++|+|++|+|.||++|||+||+||
T Consensus 248 ~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~ 280 (362)
T PLN02393 248 DNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQ 280 (362)
T ss_pred CCCCcceeeECCEEEECCCCCCeEEEEcchhhH
Confidence 579999999999999999999999999999986
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=5.4e-63 Score=455.40 Aligned_cols=254 Identities=26% Similarity=0.446 Sum_probs=222.5
Q ss_pred ehhhhhccCCCCCCCccCCCCcc-Cc----------CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCC
Q 042504 27 FDYHKLQKQANLPTEFIWPNLEL-AQ----------EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHG 95 (286)
Q Consensus 27 ~~~~~~~~~~~iP~~~i~p~~~~-~~----------~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhG 95 (286)
++.++.+++..||..|++|++++ .. ...+||||||+.+.++++++|++++++|++||++||||||+|||
T Consensus 8 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHG 87 (360)
T PLN03178 8 VEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHG 87 (360)
T ss_pred HHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCC
Confidence 68888889999999999999876 21 24579999999998888778899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCHHHHhcCCcCC--CCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCc
Q 042504 96 VDASLLKAAIEETDSIFKLPLERKLSIPIKT--GLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQ 173 (286)
Q Consensus 96 i~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~ 173 (286)
|+.++++++++.+++||+||.|+|+++.... +.++||+........+..||+|.|.+...|.. ....+.||..
T Consensus 88 I~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~n~wP~~---- 162 (360)
T PLN03178 88 IPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPED-KRDPSLWPKT---- 162 (360)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCcc-ccccccCCCC----
Confidence 9999999999999999999999999997743 34789976544434566789998766433433 2335678754
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhc---CCcceeEEeecCCCCCCCCCccccccccCCceEE
Q 042504 174 DFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFE---DGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTI 250 (286)
Q Consensus 174 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTl 250 (286)
.++||+++++|+++|++|+.+||++||++||+++++|.+.+. ...+.||++|||+|+.++..+|+++|||+|+|||
T Consensus 163 -~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTl 241 (360)
T PLN03178 163 -PPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTF 241 (360)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEE
Confidence 478999999999999999999999999999999999999887 3457899999999999888999999999999999
Q ss_pred EecCCCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 251 LHQEQVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 251 L~qd~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
|+||+++||||+++|+|++|+|.||++||||||+||
T Consensus 242 L~qd~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~ 277 (360)
T PLN03178 242 ILHNMVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLE 277 (360)
T ss_pred EeeCCCCceeEeECCEEEEcCCCCCeEEEEccHHHH
Confidence 999999999999999999999999999999999986
No 7
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=2.5e-62 Score=449.44 Aligned_cols=237 Identities=30% Similarity=0.473 Sum_probs=205.9
Q ss_pred cCCCCCCCccCCCCcc--C-------cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHH
Q 042504 34 KQANLPTEFIWPNLEL--A-------QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAA 104 (286)
Q Consensus 34 ~~~~iP~~~i~p~~~~--~-------~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~ 104 (286)
+..+||.+|++|.+++ . ....+||||||+. + .++++|++||++||||||+||||+.++++++
T Consensus 26 ~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~-----~----~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~ 96 (358)
T PLN02254 26 SLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD-----P----NALTLIGHACETWGVFQVTNHGIPLSLLDDI 96 (358)
T ss_pred hhccCChhhcCChhhccCccccccccCcCCCCCeEeCCC-----H----HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHH
Confidence 4568999999999776 1 1235799999984 2 3578999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHH
Q 042504 105 IEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQK 184 (286)
Q Consensus 105 ~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~ 184 (286)
++.+++||+||.|+|+++.+..+..+||+.........+.+|+|.|.+...|.. ...+.||.. .++||+++++
T Consensus 97 ~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~--~~~~~wP~~-----~~~fr~~~~~ 169 (358)
T PLN02254 97 ESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLE--HARQLWPQD-----HTKFCDVMEE 169 (358)
T ss_pred HHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccc--cchhhCCCC-----chHHHHHHHH
Confidence 999999999999999999776556789987655544567899999988654432 235678864 3789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHhh-----cCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCce
Q 042504 185 YCQAMWKLSGVLFELLAMSLGVDRKHYKKFF-----EDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGL 259 (286)
Q Consensus 185 y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~-----~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GL 259 (286)
|+++|++|+.+||++|+++||+++++|.+++ .++.+.||+||||||+.++.++|+++|||+|+||||+||+++||
T Consensus 170 Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GL 249 (358)
T PLN02254 170 YQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGL 249 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCc
Confidence 9999999999999999999999999998766 45668999999999999999999999999999999999999999
Q ss_pred EEEeCC-eEEEeccCCCcEEEecCCCCC
Q 042504 260 EVFSNN-KWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 260 qV~~~g-~W~~V~p~pg~~vVNiGD~lq 286 (286)
||+++| +|++|+|+||++||||||+||
T Consensus 250 QV~~~~~~Wi~V~p~pgalVVNiGD~lq 277 (358)
T PLN02254 250 QVFREGVGWVTVPPVPGSLVVNVGDLLH 277 (358)
T ss_pred eEECCCCEEEEcccCCCCEEEEhHHHHH
Confidence 999766 899999999999999999986
No 8
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=7.6e-62 Score=446.28 Aligned_cols=248 Identities=28% Similarity=0.440 Sum_probs=212.4
Q ss_pred hccCCCCCCCccCCCCcc-C----cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHH
Q 042504 32 LQKQANLPTEFIWPNLEL-A----QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIE 106 (286)
Q Consensus 32 ~~~~~~iP~~~i~p~~~~-~----~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~ 106 (286)
..|++.||..|++|.+++ . ....+||||||+.+..++ .+|.+++++|++||++||||||+||||+.++++++++
T Consensus 9 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~ 87 (358)
T PLN02515 9 LAGESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVG-GRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTR 87 (358)
T ss_pred ccCCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCc-hHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHH
Confidence 346789999999998776 1 122479999999987544 5678899999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHH
Q 042504 107 ETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYC 186 (286)
Q Consensus 107 ~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~ 186 (286)
.+++||+||.|+|+++....+..+||.........+..||+|.|.+...+.. ....+.||.. .+.||+++++|+
T Consensus 88 ~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~-~~~~n~WP~~-----~~~fr~~~~~y~ 161 (358)
T PLN02515 88 LARDFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVR-TRDYSRWPDK-----PEGWRAVTEEYS 161 (358)
T ss_pred HHHHHhcCCHHHHhhhCcCCCCccCcccccccccccccCceeeeccccCccc-cccccccccc-----chHHHHHHHHHH
Confidence 9999999999999998775545689964332222345799999976533432 2335778864 378999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCceEEEeCC-
Q 042504 187 QAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGLEVFSNN- 265 (286)
Q Consensus 187 ~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~g- 265 (286)
++|.+|+.+||++|+++||+++++|.+.+....+.||++|||+|+.++..+|+++|||+|+||||+||+++||||++++
T Consensus 162 ~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~ 241 (358)
T PLN02515 162 EKLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGG 241 (358)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECCC
Confidence 9999999999999999999999999998887778999999999999888999999999999999999999999998653
Q ss_pred -eEEEeccCCCcEEEecCCCCC
Q 042504 266 -KWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 266 -~W~~V~p~pg~~vVNiGD~lq 286 (286)
+|++|+|.||+||||+||+||
T Consensus 242 ~~Wi~Vpp~pgalVVNiGD~L~ 263 (358)
T PLN02515 242 KTWITVQPVEGAFVVNLGDHGH 263 (358)
T ss_pred CeEEECCCCCCeEEEEccHHHH
Confidence 799999999999999999986
No 9
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.7e-61 Score=443.05 Aligned_cols=252 Identities=24% Similarity=0.397 Sum_probs=215.2
Q ss_pred ehhhhhccCCCCCCCccCCCCcc----C----cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCH
Q 042504 27 FDYHKLQKQANLPTEFIWPNLEL----A----QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDA 98 (286)
Q Consensus 27 ~~~~~~~~~~~iP~~~i~p~~~~----~----~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~ 98 (286)
+++++.++ ..||..|++|+.+. . ....+||||||+.+.++++..+++ +++|++||++||||||+||||+.
T Consensus 9 ~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~-~~~l~~A~~~~GFf~l~nHGI~~ 86 (348)
T PLN00417 9 VQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREE-LSKLHSALSTWGVVQVMNHGITE 86 (348)
T ss_pred HHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHH-HHHHHHHHHHCCEEEEEcCCCCH
Confidence 68887765 69999999999874 1 134589999999998776655444 58999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHH
Q 042504 99 SLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERK 178 (286)
Q Consensus 99 ~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~f 178 (286)
++++++++.+++||+||.|+|+++....+..+||+...........||+|.+++...|.. ....+.||.. .++|
T Consensus 87 ~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~n~wP~~-----~~~f 160 (348)
T PLN00417 87 AFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTYPED-QRQLKFWPQV-----PVGF 160 (348)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccCCcc-cccccccccc-----cHHH
Confidence 999999999999999999999999876556789976432222456789998877644433 2335778864 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcC-CcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CC
Q 042504 179 RWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFED-GYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QV 256 (286)
Q Consensus 179 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v 256 (286)
|+++++|+++|.+|+.+||++||++||+++++|.+++.. ..+.||+||||||+.++.++|+++|||+|+||||+|| ++
T Consensus 161 r~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v 240 (348)
T PLN00417 161 RETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDV 240 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCC
Confidence 999999999999999999999999999999999988865 3467999999999998889999999999999999996 69
Q ss_pred CceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 257 EGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 257 ~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+||||+++|+|++|+|+||++||||||+||
T Consensus 241 ~GLQV~~~g~Wi~V~p~pg~lVVNiGD~Le 270 (348)
T PLN00417 241 EGLQFLKDGKWYKAPIVPDTILINVGDQME 270 (348)
T ss_pred CceeEeECCeEEECCCCCCcEEEEcChHHH
Confidence 999999999999999999999999999986
No 10
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.7e-61 Score=442.97 Aligned_cols=250 Identities=22% Similarity=0.416 Sum_probs=212.0
Q ss_pred eeehhhhhccCCCCCCCccCCCCcc-C-c----CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCH
Q 042504 25 IVFDYHKLQKQANLPTEFIWPNLEL-A-Q----EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDA 98 (286)
Q Consensus 25 ~~~~~~~~~~~~~iP~~~i~p~~~~-~-~----~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~ 98 (286)
..||++. +|+..||+.|++|.+++ . . ...+||+|||+.+.+.+ +.+++++|++||++||||||+||||+.
T Consensus 6 ~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~---~~~~~~~l~~A~~~~GFf~v~nHGI~~ 81 (348)
T PLN02912 6 LLVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPN---RADIINQFAHACSSYGFFQIKNHGVPE 81 (348)
T ss_pred hHHHHHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcC---HHHHHHHHHHHHHHCCEEEEEeCCCCH
Confidence 4567776 78999999999998776 2 1 34579999999986533 567899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHhcCCc-CCCC-CCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchh
Q 042504 99 SLLKAAIEETDSIFKLPLERKLSIPI-KTGL-AKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFE 176 (286)
Q Consensus 99 ~l~~~~~~~~~~FF~lp~eeK~~~~~-~~~~-~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~ 176 (286)
++++++++.+++||+||.|+|+++.. .... .+||...... ..+..+|+|.+.+...+.. ...+.||.. .+
T Consensus 82 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~--~~~n~wP~~-----~~ 153 (348)
T PLN02912 82 ETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVS-KEKVSNWRDFLRLHCYPIE--DFIEEWPST-----PI 153 (348)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCccccccccccc-ccccCCchheEEEeecCcc--cccccCcch-----hH
Confidence 99999999999999999999999543 3222 3344332211 2345789999887643332 235678864 37
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCC
Q 042504 177 RKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQV 256 (286)
Q Consensus 177 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v 256 (286)
+||+++++|+++|.+|+.+||++||++||+++++|.+++....+.||+||||||+.++..+|+++|||+|+||||+||++
T Consensus 154 ~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v 233 (348)
T PLN02912 154 SFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEV 233 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCC
Confidence 89999999999999999999999999999999999998888888999999999999888999999999999999999999
Q ss_pred CceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 257 EGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 257 ~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+||||+++|+|++|+|.||++|||+||+||
T Consensus 234 ~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~ 263 (348)
T PLN02912 234 SGLQVFKDGKWIAVNPIPNTFIVNLGDQMQ 263 (348)
T ss_pred CceEEEECCcEEECCCcCCeEEEEcCHHHH
Confidence 999999999999999999999999999986
No 11
>PLN02904 oxidoreductase
Probab=100.00 E-value=5.3e-61 Score=440.88 Aligned_cols=257 Identities=24% Similarity=0.394 Sum_probs=216.4
Q ss_pred ccCcceeehhhhhccCCCCCCCccCCCCcc-Cc------CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEE
Q 042504 20 QKNGSIVFDYHKLQKQANLPTEFIWPNLEL-AQ------EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVI 92 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~iP~~~i~p~~~~-~~------~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~ 92 (286)
.+.+...|++++.+|+.+||.+|++|.+++ .. ....||+|||+.+.+ +..|.+++++|++||++||||||+
T Consensus 9 ~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~--~~~r~~~~~~l~~Ac~~~GFf~v~ 86 (357)
T PLN02904 9 LDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHD--PLLRSCVIHEIEMACKGFGFFQVI 86 (357)
T ss_pred hhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCC--chhHHHHHHHHHHHHHHCceEEEE
Confidence 334445689999999999999999999887 21 235799999998864 356778999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCC-CCCCCccCCCCCccccCCCccccccccccCCCCccchhccccccC
Q 042504 93 NHGVDASLLKAAIEETDSIFKLPLERKLSIPIKT-GLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVF 171 (286)
Q Consensus 93 nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~ 171 (286)
||||+.++++++++.+++||+||.|+|+++.... ....||+.......+...+|+|.+.....|.. ...+.||..
T Consensus 87 nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~--~~~n~WP~~-- 162 (357)
T PLN02904 87 NHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLS--KWINLWPSN-- 162 (357)
T ss_pred eCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcc--cccccCccc--
Confidence 9999999999999999999999999999986532 22346654333222445689988765433322 225678754
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEE
Q 042504 172 GQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTIL 251 (286)
Q Consensus 172 ~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL 251 (286)
.+.||+++++|+++|.+|+.+||++||++||+++++|.+.+....+.||+||||+|+.++.++|+++|||+|+||||
T Consensus 163 ---~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL 239 (357)
T PLN02904 163 ---PPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTIL 239 (357)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEE
Confidence 37899999999999999999999999999999999999998888889999999999998889999999999999999
Q ss_pred ecCCCCceEEEe-CCeEEEeccCCCcEEEecCCCCC
Q 042504 252 HQEQVEGLEVFS-NNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 252 ~qd~v~GLqV~~-~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+|+ ++||||+. +|+|++|+|.||+|||||||+||
T Consensus 240 ~qd-~~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le 274 (357)
T PLN02904 240 LQS-SQGLQIMDCNKNWVCVPYIEGALIVQLGDQVE 274 (357)
T ss_pred ecC-CCeeeEEeCCCCEEECCCCCCeEEEEccHHHH
Confidence 997 59999986 79999999999999999999986
No 12
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=6.2e-60 Score=427.29 Aligned_cols=228 Identities=36% Similarity=0.610 Sum_probs=204.8
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCC
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKG 131 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~G 131 (286)
...+||+|||+.+...++ .+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+..+...|
T Consensus 14 ~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~g 92 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRG 92 (322)
T ss_pred cCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccc
Confidence 356899999998877665 7888999999999999999999999999999999999999999999999999987666799
Q ss_pred ccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 042504 132 YAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHY 211 (286)
Q Consensus 132 Y~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 211 (286)
|............+|.|.+.+...|.. ....+.||..+ +.||+++++|.+++.+|+.+|+++|+++||++..++
T Consensus 93 Y~~~~~~~~~~~~~w~d~~~~~~~p~~-~~~~~~wp~~p-----~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~ 166 (322)
T KOG0143|consen 93 YGTSFILSPLKELDWRDYLTLLSAPES-SFDPNLWPEGP-----PEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYL 166 (322)
T ss_pred ccccccccccccccchhheeeeccCcc-ccCcccCcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 988776544567899999987766653 23467888754 889999999999999999999999999999987778
Q ss_pred HHhhcC-CcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CCCceEEE-eCCeEEEeccCCCcEEEecCCCCC
Q 042504 212 KKFFED-GYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QVEGLEVF-SNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 212 ~~~~~~-~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~-~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
.+.+.. ..+.||+|||||||+|+.++|+++|||.++||||+|| +|+||||+ ++|+|++|+|.||+|||||||+||
T Consensus 167 ~~~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~ 244 (322)
T KOG0143|consen 167 EKLFGETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQ 244 (322)
T ss_pred HHhhCCccceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHh
Confidence 888876 5679999999999999999999999999999999997 89999999 599999999999999999999997
No 13
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.5e-60 Score=431.58 Aligned_cols=245 Identities=30% Similarity=0.504 Sum_probs=207.9
Q ss_pred hhhhhccC--CCCCCCccCCCCcc-C----cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHH
Q 042504 28 DYHKLQKQ--ANLPTEFIWPNLEL-A----QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASL 100 (286)
Q Consensus 28 ~~~~~~~~--~~iP~~~i~p~~~~-~----~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l 100 (286)
++++.+|+ .+||+.|++|++++ . ....+||||||+.. .+++++++|++||++||||||+||||+.++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l 76 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP------DRAQVVQQIGDACRRYGFFQVINHGVSAEL 76 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHH
Confidence 35777877 89999999999776 2 23468999999963 356789999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHhcCCcC-CCC-CCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHH
Q 042504 101 LKAAIEETDSIFKLPLERKLSIPIK-TGL-AKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERK 178 (286)
Q Consensus 101 ~~~~~~~~~~FF~lp~eeK~~~~~~-~~~-~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~f 178 (286)
++++++.+++||+||.|+|+++... ... .++|..... ......+|+|.+.+...|.. ...+.||.. .++|
T Consensus 77 ~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~p~~--~~~n~wP~~-----~~~f 148 (337)
T PLN02639 77 VEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNV-RKEKVHNWRDYLRLHCYPLD--KYVPEWPSN-----PPSF 148 (337)
T ss_pred HHHHHHHHHHHhcCCHHHHhhhhccCCCCcccccccccc-ccCcccCchheEEeeecCCc--ccchhCccc-----chHH
Confidence 9999999999999999999997553 222 233332221 12345689999988654432 225678864 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CCC
Q 042504 179 RWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QVE 257 (286)
Q Consensus 179 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v~ 257 (286)
|+++++|+++|.+|+.+||++||++||+++++|.+++....+.||++|||+|+.++..+|+++|||+|+||||+|| +++
T Consensus 149 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~ 228 (337)
T PLN02639 149 KEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVA 228 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcC
Confidence 9999999999999999999999999999999999988888889999999999998889999999999999999998 499
Q ss_pred ceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 258 GLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 258 GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
||||+++|+|++|+|.||++|||+||+||
T Consensus 229 GLQV~~~g~Wi~V~p~pg~lVVNiGD~L~ 257 (337)
T PLN02639 229 GLQVLKDGKWVAVNPHPGAFVINIGDQLQ 257 (337)
T ss_pred ceEeecCCeEEeccCCCCeEEEechhHHH
Confidence 99999999999999999999999999986
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.1e-59 Score=431.29 Aligned_cols=241 Identities=31% Similarity=0.511 Sum_probs=205.8
Q ss_pred CCCCCCccCCCCcc-C--c--CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHh
Q 042504 36 ANLPTEFIWPNLEL-A--Q--EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDS 110 (286)
Q Consensus 36 ~~iP~~~i~p~~~~-~--~--~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~ 110 (286)
.++|..|++|++++ . . ...+||||||+.+.. .++++++++|++||++||||||+||||+.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~ 78 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVSTS---HDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKE 78 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCCc---ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899999998776 2 1 245899999998532 34678899999999999999999999999999999999999
Q ss_pred hcCCCHHHHhcCCcCCCCCCCccCCCCCccccCCCcccccccccc-CC----C-Cc------cchhccccccCCcchhHH
Q 042504 111 IFKLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYH-EK----D-AE------PLFVDYFKSVFGQDFERK 178 (286)
Q Consensus 111 FF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~-p~----~-~~------~~~~~wp~~~~~~~~~~f 178 (286)
||+||.|+|+++.......+||..... ..+..||+|.|.++.. +. . .. ...+.||.. .++|
T Consensus 79 FF~LP~eeK~~~~~~~~~~~GY~~~~~--~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~-----~~~f 151 (345)
T PLN02750 79 FFDQTTEEKRKVKRDEVNPMGYHDSEH--TKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQN-----PSHF 151 (345)
T ss_pred HHcCCHHHHHhhccCCCCccCcCcccc--cccCCCceeEEEEeecccccccccccccccccccccccCCCC-----cHHH
Confidence 999999999999765444679964322 2345699999998743 11 0 00 013567653 4789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCc
Q 042504 179 RWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEG 258 (286)
Q Consensus 179 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~G 258 (286)
|+++++|++.|.+|+.+||++||++||+++++|.+++.+..+.||++|||||+.++..+|+++|||+|+||||+||+++|
T Consensus 152 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~G 231 (345)
T PLN02750 152 RELCQEYARQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGG 231 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCc
Confidence 99999999999999999999999999999999999998888999999999999888899999999999999999999999
Q ss_pred eEEE--eCCeEEEeccCCCcEEEecCCCCC
Q 042504 259 LEVF--SNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 259 LqV~--~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
|||+ .+|+|++|+|+||++|||+||+||
T Consensus 232 LQV~~~~~g~Wi~V~p~pg~~vVNiGD~L~ 261 (345)
T PLN02750 232 LQISRRSDGEWIPVKPIPDAFIINIGNCMQ 261 (345)
T ss_pred eEEeecCCCeEEEccCCCCeEEEEhHHHHH
Confidence 9997 479999999999999999999986
No 15
>PLN02704 flavonol synthase
Probab=100.00 E-value=1.5e-59 Score=428.83 Aligned_cols=248 Identities=25% Similarity=0.425 Sum_probs=210.5
Q ss_pred ehhhhhcc--CCCCCCCccCCCCcc-Cc-----CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCH
Q 042504 27 FDYHKLQK--QANLPTEFIWPNLEL-AQ-----EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDA 98 (286)
Q Consensus 27 ~~~~~~~~--~~~iP~~~i~p~~~~-~~-----~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~ 98 (286)
++.++.++ ..+||.+|++|+.++ .. ...+||||||+... +++++++|++||++||||||+||||+.
T Consensus 6 ~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~~------~~~~~~~l~~Ac~~~GFf~l~nHGI~~ 79 (335)
T PLN02704 6 VQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDPD------EEKLTRLIAEASKEWGMFQIVNHGIPS 79 (335)
T ss_pred HHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCcc------HHHHHHHHHHHHHHcCEEEEEcCCCCH
Confidence 46666654 789999999999887 21 34579999999641 356789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHhcCCcCCC--CCCCccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchh
Q 042504 99 SLLKAAIEETDSIFKLPLERKLSIPIKTG--LAKGYAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFE 176 (286)
Q Consensus 99 ~l~~~~~~~~~~FF~lp~eeK~~~~~~~~--~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~ 176 (286)
++++++++.+++||+||.|+|+++..... .++||.........+..+|+|.+.....|.. ....+.||.. .+
T Consensus 80 ~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~-~~~~n~wP~~-----~p 153 (335)
T PLN02704 80 EVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPS-AINYQFWPKN-----PP 153 (335)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCc-ccchhhCccc-----cc
Confidence 99999999999999999999999876432 3689976654444566789998755433322 1235678864 37
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCC--cceeEEeecCCCCCCCCCccccccccCCceEEEecC
Q 042504 177 RKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDG--YSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE 254 (286)
Q Consensus 177 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~--~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd 254 (286)
.||+++++|+++|.+|+.+||++|+++||+++++|.+++... .++||++|||+|+.++..+|+++|||+|+||||+||
T Consensus 154 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd 233 (335)
T PLN02704 154 SYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPN 233 (335)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecC
Confidence 899999999999999999999999999999999999887643 468999999999998889999999999999999999
Q ss_pred CCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 255 QVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 255 ~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+++||||+++|+|++|+|.||++|||+||+||
T Consensus 234 ~v~GLQV~~~g~Wi~V~p~pg~lvVNvGD~L~ 265 (335)
T PLN02704 234 EVQGLQVFRDDHWFDVKYIPNALVIHIGDQIE 265 (335)
T ss_pred CCCceeEeECCEEEeCCCCCCeEEEEechHHH
Confidence 99999999999999999999999999999986
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.9e-58 Score=419.87 Aligned_cols=229 Identities=26% Similarity=0.450 Sum_probs=200.1
Q ss_pred CCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcC-CCCCCC
Q 042504 53 ELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIK-TGLAKG 131 (286)
Q Consensus 53 ~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~-~~~~~G 131 (286)
..+||||||+.+.++++.++++++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ....+|
T Consensus 3 ~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~G 82 (320)
T PTZ00273 3 RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRG 82 (320)
T ss_pred CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCC
Confidence 4579999999998888888899999999999999999999999999999999999999999999999998654 344789
Q ss_pred ccCCCCCcc--ccCCCcccccccccc-CCCCc--------cchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042504 132 YAGAHAGRF--TTNLPWKETFTFNYH-EKDAE--------PLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELL 200 (286)
Q Consensus 132 Y~~~~~~~~--~~~~d~~E~~~~~~~-p~~~~--------~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~l 200 (286)
|.+...+.. ....||+|.|.++.. |.... ...+.||. ..++||+++++|+++|.+|+.+||++|
T Consensus 83 Y~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~-----~~p~fr~~~~~y~~~~~~l~~~ll~~l 157 (320)
T PTZ00273 83 YGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPT-----QVEGWMELMETHYRDMQALALVLLRAL 157 (320)
T ss_pred CCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987655432 345799999998743 22110 12455654 458899999999999999999999999
Q ss_pred HHHcCCChhHHHHhhcCCcceeEEeecCCCCC-CCCCccccccccCCceEEEecCCCCceEEE-eCCeEEEeccCCCcEE
Q 042504 201 AMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKN-SALTLGTGPHYDPNSLTILHQEQVEGLEVF-SNNKWQTIRPRSDALV 278 (286)
Q Consensus 201 a~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~-~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~-~~g~W~~V~p~pg~~v 278 (286)
|++||+++++|.+.+..+.+.||++|||+|+. ++.++|+++|||+|+||||+||.++||||+ ++|+|++|+|.||++|
T Consensus 158 a~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lv 237 (320)
T PTZ00273 158 ALAIGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFV 237 (320)
T ss_pred HHHhCcCHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEE
Confidence 99999999999999988888999999999987 356899999999999999999999999998 5899999999999999
Q ss_pred EecCCCCC
Q 042504 279 INIGDTFV 286 (286)
Q Consensus 279 VNiGD~lq 286 (286)
||+||+||
T Consensus 238 VNvGD~l~ 245 (320)
T PTZ00273 238 VNIGDMME 245 (320)
T ss_pred EEHHHHHH
Confidence 99999986
No 17
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=2.2e-58 Score=401.24 Aligned_cols=228 Identities=29% Similarity=0.400 Sum_probs=209.0
Q ss_pred CCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCC-CCCC
Q 042504 53 ELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTG-LAKG 131 (286)
Q Consensus 53 ~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~-~~~G 131 (286)
...||+|||+.+..+++.+|..++++|++||++||||||+||||+..+++++++.+++||+||.|+|+++.+..+ ..+|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 457999999999988888999999999999999999999999999999999999999999999999999998765 4899
Q ss_pred ccCCCCCccccCCCccccccccccCC--C-C------ccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042504 132 YAGAHAGRFTTNLPWKETFTFNYHEK--D-A------EPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAM 202 (286)
Q Consensus 132 Y~~~~~~~~~~~~d~~E~~~~~~~p~--~-~------~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~ 202 (286)
|.....+..++..||+|.|+++.+-. . . ..++|.|| ..|+||+++.+|+++|.+++.+||++||.
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP------~ip~~r~~ll~~~~~~~~~~~rLL~aiA~ 156 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP------AIPGLRDALLQYYRAMTAVGLRLLRAIAL 156 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888889999999985411 1 0 12466777 24899999999999999999999999999
Q ss_pred HcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCceEEEeC-CeEEEeccCCCcEEEec
Q 042504 203 SLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGLEVFSN-NKWQTIRPRSDALVINI 281 (286)
Q Consensus 203 ~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~-g~W~~V~p~pg~~vVNi 281 (286)
+|+|++++|+..++++.+.||+++||+.+..+..-|.|+|||+|+||||+||+++||||+.. |+|++|+|.||++||||
T Consensus 157 ~LdL~~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P~pgtlvVNi 236 (322)
T COG3491 157 GLDLPEDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVNI 236 (322)
T ss_pred HcCCChhhhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCCCCCeEEEeH
Confidence 99999999999999999999999999999988888999999999999999999999999965 99999999999999999
Q ss_pred CCCCC
Q 042504 282 GDTFV 286 (286)
Q Consensus 282 GD~lq 286 (286)
||+||
T Consensus 237 GdmLe 241 (322)
T COG3491 237 GDMLE 241 (322)
T ss_pred HHHHH
Confidence 99986
No 18
>PLN02997 flavonol synthase
Probab=100.00 E-value=1e-57 Score=414.22 Aligned_cols=219 Identities=23% Similarity=0.405 Sum_probs=191.3
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCC
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKG 131 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~G 131 (286)
...+||||||+.+. +++++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+|
T Consensus 29 ~~~~IPvIDls~~~------~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~G 101 (325)
T PLN02997 29 SAVDVPVVDLSVSD------EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE-EDFEG 101 (325)
T ss_pred CCCCCCeEECCCCC------HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCccc
Confidence 46689999999752 356899999999999999999999999999999999999999999999998764 34789
Q ss_pred ccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 042504 132 YAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHY 211 (286)
Q Consensus 132 Y~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 211 (286)
|..... .+..+|+|.+.....|.. ....+.||.. .++||+++++|++.|.+|+.+||++|+++||+++++|
T Consensus 102 Y~~~~~---~~~~d~~e~~~~~~~p~~-~~~~n~wP~~-----~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f 172 (325)
T PLN02997 102 YKRNYL---GGINNWDEHLFHRLSPPS-IINYKYWPKN-----PPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETF 172 (325)
T ss_pred cCcccc---cCCCCccceeEeeecCcc-ccccccCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 986543 356689998765443432 2235678754 3789999999999999999999999999999999999
Q ss_pred HHhhcCC--cceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 212 KKFFEDG--YSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 212 ~~~~~~~--~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
.+.+... .+.||+||||+|+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++|||+||+||
T Consensus 173 ~~~~~~~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le 249 (325)
T PLN02997 173 TQSIGGETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAFKDEQWLDLNYINSAVVVIIGDQLM 249 (325)
T ss_pred HHHhcCCcccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEeECCcEEECCCCCCeEEEEechHHH
Confidence 9988643 35899999999999888999999999999999999999999999999999999999999999999986
No 19
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=8e-57 Score=408.01 Aligned_cols=219 Identities=26% Similarity=0.513 Sum_probs=188.7
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCC
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKG 131 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~G 131 (286)
...+||+|||+.+.. .++++++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... .+|
T Consensus 3 ~~~~iPvIDls~~~~---~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~---~~g 76 (321)
T PLN02299 3 KMESFPVIDMEKLNG---EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA---SKG 76 (321)
T ss_pred CCCCCCEEECcCCCc---ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC---CCC
Confidence 356799999998853 24567899999999999999999999999999999999999999999999997543 367
Q ss_pred ccCCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 042504 132 YAGAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHY 211 (286)
Q Consensus 132 Y~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 211 (286)
|.+...+ .+..||+|.|.++..|.. ..+.||.. .++||+++++|++.|.+|+.+||++|+++||+++++|
T Consensus 77 y~~~~~~--~~~~d~ke~~~~~~~~~~---~~~~wP~~-----~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 146 (321)
T PLN02299 77 LEGVQTE--VEDLDWESTFFLRHLPES---NLADIPDL-----DDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYL 146 (321)
T ss_pred ccccccc--CCCcCHHHHcccccCCcc---ccccCccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 7654322 245699999988633322 24568754 3789999999999999999999999999999999999
Q ss_pred HHhhcC---CcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 212 KKFFED---GYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 212 ~~~~~~---~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
.+++.+ ..+.||++|||||+.++..+|+++|||+|+||||+|| +++||||+++|+|++|+|.||++||||||+||
T Consensus 147 ~~~~~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~ 225 (321)
T PLN02299 147 KKAFHGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLE 225 (321)
T ss_pred HHHhcCCCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHH
Confidence 988752 4557999999999998888999999999999999996 59999999999999999999999999999986
No 20
>PLN02485 oxidoreductase
Probab=100.00 E-value=9.1e-57 Score=410.14 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=193.7
Q ss_pred CCCCceeeCCCCCCC--C-----HHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcC
Q 042504 53 ELREPLIDLHGFLSG--D-----ERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIK 125 (286)
Q Consensus 53 ~~~iPvIDl~~l~~~--d-----~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~ 125 (286)
...||||||+.|.++ + +.++++++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++...
T Consensus 5 ~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~ 84 (329)
T PLN02485 5 FKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMT 84 (329)
T ss_pred CCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccc
Confidence 357999999998642 2 235678999999999999999999999999999999999999999999999998764
Q ss_pred C-CCCCCccCCCCCccccCCCcccccccccc--CCCC------ccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 042504 126 T-GLAKGYAGAHAGRFTTNLPWKETFTFNYH--EKDA------EPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVL 196 (286)
Q Consensus 126 ~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~--p~~~------~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~l 196 (286)
. ...+||.+.+.+...+..||+|.|.+... +... ....+.||. ..++||+++++|+++|.+|+.+|
T Consensus 85 ~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~-----~~~~fr~~~~~y~~~~~~l~~~l 159 (329)
T PLN02485 85 PAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPE-----NPQEFKALMEEYIKLCTDLSRKI 159 (329)
T ss_pred CCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34789987655544567899999988642 1110 122456764 34889999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHhh-cCCcceeEEeecCCCCC----CCCCccccccccCCceEEEecC-CCCceEEE-eCCeEEE
Q 042504 197 FELLAMSLGVDRKHYKKFF-EDGYSIVRFNFYPPCKN----SALTLGTGPHYDPNSLTILHQE-QVEGLEVF-SNNKWQT 269 (286)
Q Consensus 197 l~~la~~Lgl~~~~~~~~~-~~~~~~lr~~~YP~~~~----~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~-~~g~W~~ 269 (286)
|++||++||+++++|.+.+ .+..+.||++|||+|+. ++..+|+++|||+|+||||+|| +++||||+ ++|+|++
T Consensus 160 l~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~ 239 (329)
T PLN02485 160 LRGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIW 239 (329)
T ss_pred HHHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEE
Confidence 9999999999999988765 45667899999999986 4568999999999999999997 58999998 6899999
Q ss_pred eccCCCcEEEecCCCCC
Q 042504 270 IRPRSDALVINIGDTFV 286 (286)
Q Consensus 270 V~p~pg~~vVNiGD~lq 286 (286)
|+|.||++||||||+||
T Consensus 240 V~p~pg~~vVNiGD~L~ 256 (329)
T PLN02485 240 AIPIPGTFVCNIGDMLK 256 (329)
T ss_pred CCCCCCcEEEEhHHHHH
Confidence 99999999999999986
No 21
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.1e-56 Score=407.51 Aligned_cols=224 Identities=24% Similarity=0.400 Sum_probs=188.5
Q ss_pred CCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCc
Q 042504 53 ELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGY 132 (286)
Q Consensus 53 ~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY 132 (286)
..+||+|||+.. .+..++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+||
T Consensus 12 ~~~iP~IDl~~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~-~~~~GY 84 (332)
T PLN03002 12 VSSLNCIDLAND------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN-EKHRGY 84 (332)
T ss_pred CCCCCEEeCCch------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC-CCCCCc
Confidence 447999999941 3456889999999999999999999999999999999999999999999998654 347899
Q ss_pred cCCCCCccc----cCCCcccccccccc-CCCCc------cchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042504 133 AGAHAGRFT----TNLPWKETFTFNYH-EKDAE------PLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLA 201 (286)
Q Consensus 133 ~~~~~~~~~----~~~d~~E~~~~~~~-p~~~~------~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la 201 (286)
.+...+... ...||+|.|+++.. |.... ...+.||... ..++||+++++|+++|.+|+.+||++||
T Consensus 85 ~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~---~~p~fr~~~~~y~~~~~~l~~~ll~~la 161 (332)
T PLN03002 85 TPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDAD---VLPGWRETMEKYHQEALRVSMAIAKLLA 161 (332)
T ss_pred CcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCc---ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876544322 23699999998753 22211 1245676431 2478999999999999999999999999
Q ss_pred HHcCCChhHHHH--hhcCCcceeEEeecCCCCCCC-CCccccccccCCceEEEecCCCCceEEEeC-----CeEEEeccC
Q 042504 202 MSLGVDRKHYKK--FFEDGYSIVRFNFYPPCKNSA-LTLGTGPHYDPNSLTILHQEQVEGLEVFSN-----NKWQTIRPR 273 (286)
Q Consensus 202 ~~Lgl~~~~~~~--~~~~~~~~lr~~~YP~~~~~~-~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~-----g~W~~V~p~ 273 (286)
++||+++++|.+ .+..+.+.||+||||+|+.++ ..+|+++|||+|+||||+||+++||||+++ |+|++|+|+
T Consensus 162 ~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~ 241 (332)
T PLN03002 162 LALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPI 241 (332)
T ss_pred HHcCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCC
Confidence 999999999986 445667889999999998765 479999999999999999999999999863 689999999
Q ss_pred CCcEEEecCCCCC
Q 042504 274 SDALVINIGDTFV 286 (286)
Q Consensus 274 pg~~vVNiGD~lq 286 (286)
||+|||||||+||
T Consensus 242 pg~~VVNiGD~L~ 254 (332)
T PLN03002 242 KGAFIVNLGDMLE 254 (332)
T ss_pred CCeEEEEHHHHHH
Confidence 9999999999986
No 22
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9.8e-56 Score=403.12 Aligned_cols=219 Identities=26% Similarity=0.506 Sum_probs=183.1
Q ss_pred CCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCC---CC
Q 042504 53 ELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTG---LA 129 (286)
Q Consensus 53 ~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~---~~ 129 (286)
..+||+|||+.+ .+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++..... ..
T Consensus 36 ~~~IPvIDls~~----------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECL----------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYF 105 (341)
T ss_pred cCCCCeEeCcHH----------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccc
Confidence 457999999965 14689999999999999999999999999999999999999999999852111 12
Q ss_pred CCccCCCCC---c----cccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042504 130 KGYAGAHAG---R----FTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAM 202 (286)
Q Consensus 130 ~GY~~~~~~---~----~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~ 202 (286)
.||...... . ..+..||+|.|.++..+.. ..+.||.. ++.++.||+++++|+++|.+|+.+||++||+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~---~~~~~p~~--~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~ 180 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLS---LLQTLSCS--DPKLESFRVLMEEYGKHLTRIAVTLFEAIAK 180 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcCCchh---hhhhcCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233211111 0 0125699999998643221 12335432 2456899999999999999999999999999
Q ss_pred HcCCC--hhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCceEEEeCCeEEEeccCCCcEEEe
Q 042504 203 SLGVD--RKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEGLEVFSNNKWQTIRPRSDALVIN 280 (286)
Q Consensus 203 ~Lgl~--~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~~~g~W~~V~p~pg~~vVN 280 (286)
+||++ +++|.+++....+.||++|||||+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++|||
T Consensus 181 ~Lgl~~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~Wv~V~p~pgalVVN 260 (341)
T PLN02984 181 TLSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVMKDGEWFNVKPIANTLVVN 260 (341)
T ss_pred HcCCCcchhHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEeeCCceEECCCCCCeEEEE
Confidence 99999 9999999988888999999999998888899999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042504 281 IGDTFV 286 (286)
Q Consensus 281 iGD~lq 286 (286)
+||+||
T Consensus 261 iGD~Le 266 (341)
T PLN02984 261 LGDMMQ 266 (341)
T ss_pred CChhhh
Confidence 999996
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=3e-55 Score=399.08 Aligned_cols=229 Identities=24% Similarity=0.400 Sum_probs=187.6
Q ss_pred ccCCCCCCCccCCCCccCcCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhc
Q 042504 33 QKQANLPTEFIWPNLELAQEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIF 112 (286)
Q Consensus 33 ~~~~~iP~~~i~p~~~~~~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF 112 (286)
+++..+|..|. .+.+||||||+. ++ ..++|++||++||||||+||||+.++++++++.+++||
T Consensus 12 ~~~~~~~~~~~--------~~~~iPvIDls~-----~~----~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 74 (335)
T PLN02156 12 SNLYVNPKCKP--------VPVLIPVIDLTD-----SD----AKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFF 74 (335)
T ss_pred cccccCCcccC--------CCCCCCcccCCC-----hH----HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 44555665554 334699999983 22 25689999999999999999999999999999999999
Q ss_pred CCCHHHHhcCCcCCCCCCCccCCCCCccccCCCccccccccccCCCC-ccchhccccccCCcchhHHHHHHHHHHHHHHH
Q 042504 113 KLPLERKLSIPIKTGLAKGYAGAHAGRFTTNLPWKETFTFNYHEKDA-EPLFVDYFKSVFGQDFERKRWIYQKYCQAMWK 191 (286)
Q Consensus 113 ~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~-~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~ 191 (286)
+||.|+|+++... ..+||+...... .+..+|+|.|.+...+... ....+.||.. .+.||+++++|+++|++
T Consensus 75 ~LP~e~K~~~~~~--~~~Gy~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~-----p~~fr~~~~~Y~~~~~~ 146 (335)
T PLN02156 75 ALPHSLKDKAGPP--DPFGYGTKRIGP-NGDVGWLEYILLNANLCLESHKTTAVFRHT-----PAIFREAVEEYMKEMKR 146 (335)
T ss_pred cCCHHHHhhcCCC--CCcccCccccCC-CCCCCceeeEeeecCCccccccchhcCccc-----cHHHHHHHHHHHHHHHH
Confidence 9999999998643 345886533221 2346899999887544321 1235667753 27899999999999999
Q ss_pred HHHHHHHHHHHHcCCC-hhHHHHhhc--CCcceeEEeecCCCCCC--CCCccccccccCCceEEEecCCCCceEEE-eCC
Q 042504 192 LSGVLFELLAMSLGVD-RKHYKKFFE--DGYSIVRFNFYPPCKNS--ALTLGTGPHYDPNSLTILHQEQVEGLEVF-SNN 265 (286)
Q Consensus 192 l~~~ll~~la~~Lgl~-~~~~~~~~~--~~~~~lr~~~YP~~~~~--~~~~g~~~HtD~~~lTlL~qd~v~GLqV~-~~g 265 (286)
|+.+||++||++||++ +++|.+++. ...+.||+||||+|+.. +..+|+++|||+|+||||+||+++||||+ ++|
T Consensus 147 L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g 226 (335)
T PLN02156 147 MSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDG 226 (335)
T ss_pred HHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCC
Confidence 9999999999999996 478998875 34578999999999863 35799999999999999999999999997 689
Q ss_pred eEEEeccCCCcEEEecCCCCC
Q 042504 266 KWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 266 ~W~~V~p~pg~~vVNiGD~lq 286 (286)
+|++|+|+||++||||||+||
T Consensus 227 ~Wi~Vpp~pga~VVNiGD~l~ 247 (335)
T PLN02156 227 TWVDVPPDHSSFFVLVGDTLQ 247 (335)
T ss_pred CEEEccCCCCcEEEEhHHHHH
Confidence 999999999999999999986
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=4e-55 Score=393.40 Aligned_cols=215 Identities=27% Similarity=0.455 Sum_probs=182.1
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAG 134 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~ 134 (286)
+||||||+.+.. .+|++++++|++||++||||||+||||+.++++++++.+++||+||.++|.. .... ..+|..
T Consensus 2 ~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~~--~~~~~~ 75 (303)
T PLN02403 2 EIPVIDFDQLDG---EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESEI--AKALDN 75 (303)
T ss_pred CCCeEeCccCCc---ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-cccc--cCcccc
Confidence 699999998853 3467889999999999999999999999999999999999999999999962 2111 112211
Q ss_pred CCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHh
Q 042504 135 AHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKF 214 (286)
Q Consensus 135 ~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~ 214 (286)
.. ..+..||+|.|.++..|.. ..+.||..+ ++||+++++|+++|.+|+.+|+++++++||+++++|.+.
T Consensus 76 ~~---~~~~~d~kE~~~~~~~p~~---~~~~wP~~~-----p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~ 144 (303)
T PLN02403 76 EG---KTSDVDWESSFFIWHRPTS---NINEIPNLS-----EDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEA 144 (303)
T ss_pred cC---CCCCccHhhhcccccCCcc---chhhCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1235699999998754532 356798643 789999999999999999999999999999999999988
Q ss_pred hc---CCcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CCCceEEEeCCeEEEeccCC-CcEEEecCCCCC
Q 042504 215 FE---DGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QVEGLEVFSNNKWQTIRPRS-DALVINIGDTFV 286 (286)
Q Consensus 215 ~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~~~g~W~~V~p~p-g~~vVNiGD~lq 286 (286)
+. ...+.||++|||+|+.++..+|+++|||+|+||||+|+ +++||||+++|+|++|+|.| |++|||+||+||
T Consensus 145 ~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 145 FSGNKGPSVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred hccCCCccceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHH
Confidence 86 33456999999999988888899999999999999997 59999999999999999999 699999999986
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=2.5e-53 Score=382.37 Aligned_cols=211 Identities=29% Similarity=0.411 Sum_probs=177.4
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCcc
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYA 133 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~ 133 (286)
..||||||+.+. +.+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+||.
T Consensus 4 ~~iPvIDls~~~--------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~-~~~~GY~ 74 (300)
T PLN02365 4 VNIPTIDLEEFP--------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV-ILGSGYM 74 (300)
T ss_pred CCCCEEEChhhH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC-CCCCCCC
Confidence 469999999862 1247899999999999999999999999999999999999999999997543 2357997
Q ss_pred CCCCCccccCCCccccccccccCCCCccchhccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHH
Q 042504 134 GAHAGRFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERKRWIYQKYCQAMWKLSGVLFELLAMSLGV-DRKHYK 212 (286)
Q Consensus 134 ~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl-~~~~~~ 212 (286)
..... .+++|.|.+.... . ....+.||.. + +..++||+++++|+++|++|+.+||++|+++||+ ++++|.
T Consensus 75 ~~~~~-----~~~~e~~~~~~~~-~-~~~~~~~~~~-~-~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~ 145 (300)
T PLN02365 75 APSEV-----NPLYEALGLYDMA-S-PQAVDTFCSQ-L-DASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQ 145 (300)
T ss_pred CcCCC-----CCchhheeccccc-C-chhhhhcccc-C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHh
Confidence 65432 4689988765211 1 1123456542 1 2347899999999999999999999999999999 888887
Q ss_pred HhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecC-CCCceEEEe--CCeEEEeccCCCcEEEecCCCCC
Q 042504 213 KFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQE-QVEGLEVFS--NNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 213 ~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd-~v~GLqV~~--~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+. .+.||++|||+|+.++..+|+++|||+|+||||+|| +++||||++ +|+|++|+|+||++|||+||+||
T Consensus 146 ~~----~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~ 218 (300)
T PLN02365 146 GW----PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVAT 218 (300)
T ss_pred hc----ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHH
Confidence 64 478999999999988889999999999999999998 499999985 68999999999999999999986
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=8.8e-45 Score=320.11 Aligned_cols=177 Identities=28% Similarity=0.432 Sum_probs=152.9
Q ss_pred HHHHHHhhcC-CCHHHHhcCCcCCC--CCCCccCCCCC--ccccCCCccccccccccCCCCccchhccccccCCcchhHH
Q 042504 104 AIEETDSIFK-LPLERKLSIPIKTG--LAKGYAGAHAG--RFTTNLPWKETFTFNYHEKDAEPLFVDYFKSVFGQDFERK 178 (286)
Q Consensus 104 ~~~~~~~FF~-lp~eeK~~~~~~~~--~~~GY~~~~~~--~~~~~~d~~E~~~~~~~p~~~~~~~~~wp~~~~~~~~~~f 178 (286)
+.+.+++||+ ||.|+|+++....+ ..+||+..... ...+..||+|.|.+...|.. ....+.||..+ +.|
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~-~~~~n~wP~~~-----~~f 74 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLS-RRNPSHWPDFP-----PDY 74 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCcc-ccchhhCCCCc-----HHH
Confidence 3578999997 99999999987543 36899654332 12345699999998654433 23467888643 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCCceEEEecCCCCc
Q 042504 179 RWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPNSLTILHQEQVEG 258 (286)
Q Consensus 179 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~qd~v~G 258 (286)
|+++++|+++|.+|+.+||++|+++||+++++|.+++.+..+.||++|||+|+.++.++|+++|||+|+||||+||+++|
T Consensus 75 ~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~G 154 (262)
T PLN03001 75 REVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEG 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCCCCc
Confidence 99999999999999999999999999999999999988777889999999999988899999999999999999999999
Q ss_pred eEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 259 LEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 259 LqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
|||+++|+|++|+|.||++||||||+||
T Consensus 155 LqV~~~g~Wi~V~p~p~a~vVNiGD~l~ 182 (262)
T PLN03001 155 LQLLKDAEWLMVPPISDAILIIIADQTE 182 (262)
T ss_pred eEEeeCCeEEECCCCCCcEEEEccHHHH
Confidence 9999999999999999999999999985
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.93 E-value=1.7e-26 Score=179.78 Aligned_cols=108 Identities=27% Similarity=0.431 Sum_probs=89.9
Q ss_pred CceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCCHHHHhcCCcCCCCCCCccCC
Q 042504 56 EPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLPLERKLSIPIKTGLAKGYAGA 135 (286)
Q Consensus 56 iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~GY~~~ 135 (286)
||||||+. +.+.|.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+. ...+||.+.
T Consensus 1 iPvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~ 75 (116)
T PF14226_consen 1 IPVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS-PSYRGYSPP 75 (116)
T ss_dssp --EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC-TTCSEEEES
T ss_pred CCeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC-CCCcccccC
Confidence 79999997 5678999999999999999999999999999999999999999999999999999555 478999987
Q ss_pred CCCcccc-CCCcccccccccc-CCCC-----ccchhcccc
Q 042504 136 HAGRFTT-NLPWKETFTFNYH-EKDA-----EPLFVDYFK 168 (286)
Q Consensus 136 ~~~~~~~-~~d~~E~~~~~~~-p~~~-----~~~~~~wp~ 168 (286)
..+...+ ..||+|+|.++.. +..+ ...+|.||.
T Consensus 76 ~~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~ 115 (116)
T PF14226_consen 76 GSESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPD 115 (116)
T ss_dssp EEECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-T
T ss_pred CccccCCCCCCceEEeEEECCCCccccccccccCCCCCCC
Confidence 7666555 8999999999876 3321 145677875
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.90 E-value=8.8e-24 Score=164.93 Aligned_cols=100 Identities=28% Similarity=0.454 Sum_probs=87.4
Q ss_pred CCCCCCccCCCCccC-c----CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHh
Q 042504 36 ANLPTEFIWPNLELA-Q----EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDS 110 (286)
Q Consensus 36 ~~iP~~~i~p~~~~~-~----~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~ 110 (286)
..+|..|+||..++. . ...+||||||+.+.+++ ..+++++++|++||++||||||+||||+.++++++++.+++
T Consensus 13 ~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~ 91 (120)
T PLN03176 13 KTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGG-EKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKE 91 (120)
T ss_pred CCCCHhhcCChhhCcCccccccCCCCCeEECccccCCc-hHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 789999999988772 1 23479999999998766 45778899999999999999999999999999999999999
Q ss_pred hcCCCHHHHhcCCcCCCCCCCccCCC
Q 042504 111 IFKLPLERKLSIPIKTGLAKGYAGAH 136 (286)
Q Consensus 111 FF~lp~eeK~~~~~~~~~~~GY~~~~ 136 (286)
||+||.|+|+++...++...||+...
T Consensus 92 FF~LP~e~K~k~~~~~~~~~gy~~~~ 117 (120)
T PLN03176 92 FFALPPEEKLRFDMSGGKKGGFIVSS 117 (120)
T ss_pred HHCCCHHHHHhcccCCCccCCcchhc
Confidence 99999999999988776778996543
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.56 E-value=2.7e-15 Score=113.11 Aligned_cols=64 Identities=39% Similarity=0.758 Sum_probs=53.0
Q ss_pred ceeEEeecCCCCCCCCCccccccccC--CceEEEecCCCCceEEEeCCeEEEeccCCCcEEEecCCCCC
Q 042504 220 SIVRFNFYPPCKNSALTLGTGPHYDP--NSLTILHQEQVEGLEVFSNNKWQTIRPRSDALVINIGDTFV 286 (286)
Q Consensus 220 ~~lr~~~YP~~~~~~~~~g~~~HtD~--~~lTlL~qd~v~GLqV~~~g~W~~V~p~pg~~vVNiGD~lq 286 (286)
+.||+++||+ ++...|+++|+|. +++|+|+|++++||||..+++|+.|++.++.++||+||+|+
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHH
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccccccccCccCccceeeeeceeeee
Confidence 5799999998 5668899999999 99999999999999999999999999999999999999663
No 30
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=90.24 E-value=2 Score=35.30 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHhhcCCcceeEEeecCCCCCCCCCccccccccCC--------ceEEEec--C-CC-Cce
Q 042504 192 LSGVLFELLAMSLGVDRKHYKKFFEDGYSIVRFNFYPPCKNSALTLGTGPHYDPN--------SLTILHQ--E-QV-EGL 259 (286)
Q Consensus 192 l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~--------~lTlL~q--d-~v-~GL 259 (286)
+...|.+.++..++++.. .......+++.+|.+-. ...+|.|.. .+|+++. + .. |.|
T Consensus 60 ~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~Y~~g~------~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~ 128 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-----LPLSAEDAQVARYGPGG------HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGEL 128 (178)
T ss_pred HHHHHHHHHHHHHCCCch-----hhccCcceEEEEECCCC------cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceE
Confidence 444455556666665421 11233458899998722 367899966 6888875 2 23 445
Q ss_pred EEEeCC--eEEEeccCCCcEEEec
Q 042504 260 EVFSNN--KWQTIRPRSDALVINI 281 (286)
Q Consensus 260 qV~~~g--~W~~V~p~pg~~vVNi 281 (286)
.+...+ ....|.|..|.+||.-
T Consensus 129 ~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 129 VFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred EecCCCCccceEEeCCCCcEEEEe
Confidence 555443 2678999999888854
No 31
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=89.87 E-value=0.3 Score=36.13 Aligned_cols=55 Identities=29% Similarity=0.467 Sum_probs=36.1
Q ss_pred eEEeecCCCCCCCCCccccccccC-----CceEEEec--CC-----CCceEEEe----CCeEEEec-----cCCCcEEEe
Q 042504 222 VRFNFYPPCKNSALTLGTGPHYDP-----NSLTILHQ--EQ-----VEGLEVFS----NNKWQTIR-----PRSDALVIN 280 (286)
Q Consensus 222 lr~~~YP~~~~~~~~~g~~~HtD~-----~~lTlL~q--d~-----v~GLqV~~----~g~W~~V~-----p~pg~~vVN 280 (286)
|++++|++ .-.+.+|+|. ..+|+|+. +. -|.|++.. ++....+. |.+|.+|+.
T Consensus 1 ~~~~~y~~------G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPP------GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEET------TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECc------CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 57888865 2247899999 58898854 23 36677763 35566666 999999988
Q ss_pred cC
Q 042504 281 IG 282 (286)
Q Consensus 281 iG 282 (286)
-+
T Consensus 75 ~~ 76 (100)
T PF13640_consen 75 PS 76 (100)
T ss_dssp ES
T ss_pred eC
Confidence 76
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=78.54 E-value=16 Score=31.58 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=33.4
Q ss_pred eeEEeecCCCCCCCCCccccccccCC-------------ceEEE--ecC----CCCceEEEe-CCeEEEeccCCCcEEEe
Q 042504 221 IVRFNFYPPCKNSALTLGTGPHYDPN-------------SLTIL--HQE----QVEGLEVFS-NNKWQTIRPRSDALVIN 280 (286)
Q Consensus 221 ~lr~~~YP~~~~~~~~~g~~~HtD~~-------------~lTlL--~qd----~v~GLqV~~-~g~W~~V~p~pg~~vVN 280 (286)
-.++++|.+-. ..++|.|.. .+|++ +.+ +-|.|.+.. .|. ..|+|..|.+||-
T Consensus 81 ~~~f~rY~~G~------~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~-~~Vkp~aG~~vlf 153 (226)
T PRK05467 81 PPLFNRYEGGM------SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE-HRVKLPAGDLVLY 153 (226)
T ss_pred cceEEEECCCC------ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc-EEEecCCCeEEEE
Confidence 46789998642 345566553 23333 222 245676653 343 6889999999886
Q ss_pred cCC
Q 042504 281 IGD 283 (286)
Q Consensus 281 iGD 283 (286)
-..
T Consensus 154 ps~ 156 (226)
T PRK05467 154 PST 156 (226)
T ss_pred CCC
Confidence 543
No 33
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=64.07 E-value=29 Score=31.55 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=33.0
Q ss_pred eeEEeecCCCCCCCCCccccccccC------------CceEEEec--C-CCCceEEEeCCeE-----------------E
Q 042504 221 IVRFNFYPPCKNSALTLGTGPHYDP------------NSLTILHQ--E-QVEGLEVFSNNKW-----------------Q 268 (286)
Q Consensus 221 ~lr~~~YP~~~~~~~~~g~~~HtD~------------~~lTlL~q--d-~v~GLqV~~~g~W-----------------~ 268 (286)
.|++.+|-+-.. ..+|.|+ .+.|+|+. | ..||=-++.+.+| +
T Consensus 133 ~lQVlrY~~Gq~------Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl 206 (310)
T PLN00052 133 NIQILRYEHGQK------YEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGL 206 (310)
T ss_pred ceEEEecCCCCC------CCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCe
Confidence 478888865332 5677774 26788875 2 3455455543221 7
Q ss_pred EeccCCCcEEE
Q 042504 269 TIRPRSDALVI 279 (286)
Q Consensus 269 ~V~p~pg~~vV 279 (286)
.|+|..|..|+
T Consensus 207 ~VkPkkG~ALl 217 (310)
T PLN00052 207 AVKPVKGDAVL 217 (310)
T ss_pred EeccCcceEEE
Confidence 89999997666
No 34
>PRK08130 putative aldolase; Validated
Probab=63.99 E-value=9.9 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++++... +++ ++++++.+++.+...+.+.|||+=
T Consensus 127 ~i~v~~y~~~--g~~----~la~~~~~~l~~~~~vll~nHGvi 163 (213)
T PRK08130 127 HVPLIPYYRP--GDP----AIAEALAGLAARYRAVLLANHGPV 163 (213)
T ss_pred ccceECCCCC--ChH----HHHHHHHHHhccCCEEEEcCCCCe
Confidence 5899887652 332 567888899999999999999973
No 35
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=63.78 E-value=10 Score=31.56 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++++... +++ ++++++.+++.+...+.+.|||+=
T Consensus 120 ~v~v~~~~~~--g~~----~la~~~~~~l~~~~~vll~nHGv~ 156 (184)
T PRK08333 120 KIPILPFRPA--GSV----ELAEQVAEAMKEYDAVIMERHGIV 156 (184)
T ss_pred CEeeecCCCC--CcH----HHHHHHHHHhccCCEEEEcCCCCE
Confidence 6999988752 333 567788888888889999999973
No 36
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=62.45 E-value=6 Score=37.36 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=37.6
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcC
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFK 113 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~ 113 (286)
...-||.||++++.++. +.++..+..++.|++.|.|+ ||.+......+..++|.+
T Consensus 46 G~~~IP~i~f~di~~~~------~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGG------VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp T--SS-EEEHHHHHCT---------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHHhCCC------CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 34469999999887642 24567788899999998875 788777777777777654
No 37
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=59.46 E-value=21 Score=30.49 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=40.4
Q ss_pred ceeEEeecCCC-CCCCCCccccccccCCceEEEecCCCCceEEE--eCCeEEEeccCCCcEEEecCCC
Q 042504 220 SIVRFNFYPPC-KNSALTLGTGPHYDPNSLTILHQEQVEGLEVF--SNNKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 220 ~~lr~~~YP~~-~~~~~~~g~~~HtD~~~lTlL~qd~v~GLqV~--~~g~W~~V~p~pg~~vVNiGD~ 284 (286)
..||.+||-|. ++++-...+..+ -..++|+..+-..+. +.|.=+.|||--|+.++|+||-
T Consensus 90 G~~~~~H~Hp~ade~E~y~vi~G~-----g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 90 GAMRELHYHPNADEPEIYYVLKGE-----GRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDE 152 (209)
T ss_pred CcccccccCCCCCcccEEEEEecc-----EEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCC
Confidence 35787777654 345444444433 344566655556664 4689999999999999999984
No 38
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=56.54 E-value=1.3e+02 Score=25.84 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=34.9
Q ss_pred eeEEeecCCCCCCCCCccccccccCC-------ceEEEecCCCCceEEE---eCCeEEEeccCCCcEEEecCCC
Q 042504 221 IVRFNFYPPCKNSALTLGTGPHYDPN-------SLTILHQEQVEGLEVF---SNNKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 221 ~lr~~~YP~~~~~~~~~g~~~HtD~~-------~lTlL~qd~v~GLqV~---~~g~W~~V~p~pg~~vVNiGD~ 284 (286)
..-+|+|.+- . +++.|.|-. ++.|=+-. ..=+.+. +.+.+..+.-..|.++|.-|+.
T Consensus 117 a~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSLG~-~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s 183 (213)
T PRK15401 117 ACLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSLGL-PAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS 183 (213)
T ss_pred EEEEEeccCc-----C-ccccccCCCcccCCCCEEEEeCCC-CeEEEecccCCCCceEEEEeCCCCEEEECchH
Confidence 3668999862 3 789999942 11111111 1112221 2456899999999999998874
No 39
>PRK06755 hypothetical protein; Validated
Probab=53.71 E-value=13 Score=31.76 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||+|+...-. .+++++.+.+++++...+.|.|||+-
T Consensus 136 ~IPiv~~~~~~------~~~la~~~~~~~~~~~avLl~~HGv~ 172 (209)
T PRK06755 136 TIPIVEDEKKF------ADLLENNVPNFIEGGGVVLVHNYGMI 172 (209)
T ss_pred EEEEEeCCCch------hHHHHHHHHhhccCCCEEEEcCCCeE
Confidence 69999886421 24667777788888889999999973
No 40
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=52.20 E-value=20 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.+|++++.. .++ .++++.+.+++.+...+.+.|||+=
T Consensus 127 ~v~~~~y~~--~gs----~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 127 DVRCTEYAA--SGT----PEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred ceeeecCCC--CCc----HHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 478887764 233 3667888889999999999999973
No 41
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=49.60 E-value=22 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-+...+++.+++++++|.+++.+
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~ 29 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSE 29 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 55665544444678888888888887755
No 42
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=49.11 E-value=23 Score=32.81 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=38.2
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhc
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIF 112 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF 112 (286)
....+|.||++.+.+.+ +.+.++.+|+.++|+..|.+-.++.+. +.+.++.|-
T Consensus 106 ~~~~~~~~d~~~~~~~~-----~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G 158 (366)
T TIGR02409 106 IELSLPKFDHEAVMKDD-----SVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIG 158 (366)
T ss_pred hcccCCceeHHHHhCCH-----HHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhc
Confidence 34678999998876533 335678999999999999998876644 344444453
No 43
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=47.04 E-value=27 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=20.9
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-+...+++.+++++++|.+|+.+
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~ 30 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSR 30 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 66666555455778888888888888664
No 44
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=45.14 E-value=55 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhccEEEEEeC-CCCHHHHHHHHHHHHh
Q 042504 72 TAEAIDLVRGACVNHGFFQVINH-GVDASLLKAAIEETDS 110 (286)
Q Consensus 72 ~~~~~~~l~~A~~~~GfF~v~nh-Gi~~~l~~~~~~~~~~ 110 (286)
+..+++++++.++++.+++++++ |++...+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 46778899999999988888875 8988877777766543
No 45
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=44.80 E-value=84 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhccE--EEEEe-CCCCHHHHHHHHHHHHhhcC
Q 042504 70 RATAEAIDLVRGACVNHGF--FQVIN-HGVDASLLKAAIEETDSIFK 113 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~Gf--F~v~n-hGi~~~l~~~~~~~~~~FF~ 113 (286)
+.-..+...+.+++..+|| |+++| ||=....+..+.+..+..|.
T Consensus 86 ~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 86 ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 4566778889999999999 66666 88777777777766666554
No 46
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=44.41 E-value=33 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++.+... +++ ++++++.+++.+...+.+.|||+=
T Consensus 122 ~v~~~~y~~~--gs~----~la~~~~~~l~~~~~vLl~nHGv~ 158 (215)
T PRK08087 122 SIPCAPYATF--GTR----ELSEHVALALKNRKATLLQHHGLI 158 (215)
T ss_pred CceeecCCCC--CCH----HHHHHHHHHhCcCCEEEecCCCCE
Confidence 4888877653 333 567778888888889999999973
No 47
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=43.35 E-value=16 Score=30.11 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=28.1
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhh-hccEEEEEeCCC
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACV-NHGFFQVINHGV 96 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~-~~GfF~v~nhGi 96 (286)
..+|+|+.... +++ ++++.|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~--~~~----~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPP--GSE----ELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THST--TCH----HHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccc--cch----hhhhhhhhhhcCCceEEeecCCce
Confidence 57999998763 333 44677888888 889999999996
No 48
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=42.84 E-value=30 Score=29.51 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=26.6
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++.+.. .++ .++++.+.+++.+...+.+.|||+=
T Consensus 124 ~i~~~~y~~--~gs----~~la~~v~~~l~~~~~vll~nHGv~ 160 (214)
T PRK06833 124 NVRCAEYAT--FGT----KELAENAFEAMEDRRAVLLANHGLL 160 (214)
T ss_pred CeeeccCCC--CCh----HHHHHHHHHHhCcCCEEEECCCCCE
Confidence 467766643 222 2567778888888899999999973
No 49
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=42.52 E-value=31 Score=30.95 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHhhhccEEEEEeCCCCHHHHHHHHHHHH
Q 042504 79 VRGACVNHGFFQVINHGVDASLLKAAIEETD 109 (286)
Q Consensus 79 l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~ 109 (286)
..+++++.|||.|.| +|..++.++.+...
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 358899999999999 99999998887655
No 50
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=42.43 E-value=82 Score=25.84 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=32.9
Q ss_pred ceeEEeecCCCCCCCCCccccccccCCce-------EEEecCCCCceEEEe---CCeEEEeccCCCcEEEecCCC
Q 042504 220 SIVRFNFYPPCKNSALTLGTGPHYDPNSL-------TILHQEQVEGLEVFS---NNKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 220 ~~lr~~~YP~~~~~~~~~g~~~HtD~~~l-------TlL~qd~v~GLqV~~---~g~W~~V~p~pg~~vVNiGD~ 284 (286)
...-+|+|.+ +. ++++|.|...+ ||=+- ...-+.+.. .+..+.|.-.+|+++|.-|++
T Consensus 97 n~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG-~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~ 164 (194)
T PF13532_consen 97 NQCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLG-SSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEA 164 (194)
T ss_dssp SEEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEE-S-EEEEEEECGGTS-EEEEEE-TTEEEEEETTH
T ss_pred CEEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEc-cCceEEEeeccCCCccEEEEcCCCCEEEeChHH
Confidence 3567899986 34 79999998633 11111 111233332 368999999999999998874
No 51
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=41.81 E-value=39 Score=27.90 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGV 96 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi 96 (286)
.||++ ... .+++ ++++.+.+++.+.-.+.+.|||+
T Consensus 115 ~ipv~-~~~--~~~~----~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGD--IGSG----ELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCC--CCCH----HHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 332 2332 56777888888889999999996
No 52
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=40.83 E-value=51 Score=27.55 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEecCCCCc-----eEEE--eCCeEEEeccCCCcEEEecCCC
Q 042504 247 SLTILHQEQVEG-----LEVF--SNNKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 247 ~lTlL~qd~v~G-----LqV~--~~g~W~~V~p~pg~~vVNiGD~ 284 (286)
-=.+|+|+. .| ..+. ..|.-+.|||.=+..+||+||.
T Consensus 93 ~g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 93 EGLILLQKE-EGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SEEEEEE-T-TS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred EEEEEEEec-CCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 345778863 44 2221 5799999999999999999984
No 53
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=40.65 E-value=36 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.6
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-+...+++.+++++++|.+++.+
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~ 30 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSK 30 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 66666544445778888888888887664
No 54
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=40.44 E-value=76 Score=30.11 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=43.1
Q ss_pred eeeCCCCC-CCCHHHHHHHHHHHHHH------------hhhccEEEEEeCCCCHHHHHHHHHHHHhhcC
Q 042504 58 LIDLHGFL-SGDERATAEAIDLVRGA------------CVNHGFFQVINHGVDASLLKAAIEETDSIFK 113 (286)
Q Consensus 58 vIDl~~l~-~~d~~~~~~~~~~l~~A------------~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~ 113 (286)
-+||+.++ +.+-++-.++-++|..+ |.+-|.|.|+-....+++++-+++..+.|-.
T Consensus 392 wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 392 WVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred EEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 37898876 44544445666667766 9999999999999999999877777777765
No 55
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=40.34 E-value=37 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=27.6
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++.+... +++ ++++.+.+++.+...+.+.|||+=
T Consensus 179 ~i~vvpy~~p--gs~----eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 179 GVGIVPWMVP--GTD----EIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred ceeEecCCCC--CCH----HHHHHHHHHhccCCEEEEcCCCCe
Confidence 4788777642 333 567778888888889999999974
No 56
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=40.05 E-value=27 Score=29.58 Aligned_cols=40 Identities=18% Similarity=-0.012 Sum_probs=28.4
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
..||++++.....++ +++++.+.+++.+.-.+.+.|||+=
T Consensus 121 ~~ip~~~~~~~~~~~----~~la~~~~~~l~~~~~vll~nHG~~ 160 (209)
T cd00398 121 GDIPCTPYMTPETGE----DEIGTQRALGFPNSKAVLLRNHGLF 160 (209)
T ss_pred CCeeecCCcCCCccH----HHHHHHHhcCCCcCCEEEEcCCCCe
Confidence 368998887642122 2556667777788889999999973
No 57
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=39.26 E-value=28 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=18.7
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-....+.+.+++++++|.+++.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~ 29 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVE 29 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 56666544444677788888888887665
No 58
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=38.69 E-value=1.1e+02 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhccEEEEEeC-CCCHHHHHHHHHHHHh
Q 042504 71 ATAEAIDLVRGACVNHGFFQVINH-GVDASLLKAAIEETDS 110 (286)
Q Consensus 71 ~~~~~~~~l~~A~~~~GfF~v~nh-Gi~~~l~~~~~~~~~~ 110 (286)
.+.+++++|.+.+++.-+++++++ |++...+.++....+.
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 456778888888888887777764 8888777777766553
No 59
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=38.06 E-value=40 Score=30.01 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||++.+.. .|+. ++++.+.+++++..-+.+.|||+=
T Consensus 177 ~i~vvp~~~--pGs~----eLA~~v~~~l~~~~avLL~nHGvv 213 (270)
T TIGR02624 177 GVGIIPWMV--PGTN----EIGEATAEKMKEHRLVLWPHHGIF 213 (270)
T ss_pred ccccccCcC--CCCH----HHHHHHHHHhccCCEEEEcCCCCe
Confidence 478877665 3343 678888899998899999999973
No 60
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=37.83 E-value=43 Score=22.06 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=18.9
Q ss_pred ceeeCCCC-CCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGF-LSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l-~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-+ ...+++.+++++++|.+++.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~ 30 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAE 30 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 56666555 234677777777777776654
No 61
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=37.05 E-value=1.2e+02 Score=24.98 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=36.0
Q ss_pred ceeEEeecCCCCCCCCCccccccccCCceE---EEe--cCCCCc-eEEE---eCCeEEEeccCCCcEEEecCCC
Q 042504 220 SIVRFNFYPPCKNSALTLGTGPHYDPNSLT---ILH--QEQVEG-LEVF---SNNKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 220 ~~lr~~~YP~~~~~~~~~g~~~HtD~~~lT---lL~--qd~v~G-LqV~---~~g~W~~V~p~pg~~vVNiGD~ 284 (286)
...-+|+|++- -++++|.|-.-+. .+. .=+... +.+. +++..+.+.-.+|.++|.-|+.
T Consensus 95 n~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 95 DACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred CEEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 34679999874 2689999952221 010 001111 1221 2456889999999999999874
No 62
>PRK06661 hypothetical protein; Provisional
Probab=35.95 E-value=44 Score=28.91 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=26.3
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~ 97 (286)
.||..++......+ .+.++.+.+++.+...+.+.|||+=
T Consensus 123 ~i~~~~~~~~~~~~----~~~~~~~a~~l~~~~avll~nHG~v 161 (231)
T PRK06661 123 RISYHNYNSLALDA----DKQSSRLVNDLKQNYVMLLRNHGAI 161 (231)
T ss_pred CceecCCCccccCc----hhHHHHHHHHhCCCCEEEECCCCCe
Confidence 35666555433221 2446678888889999999999974
No 63
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=35.26 E-value=52 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=20.0
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|.+.-+...+.+.++++++.|.+++.+
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~ 30 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVE 30 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 66666544445778888888888876554
No 64
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=34.88 E-value=1.4e+02 Score=24.43 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhccEEEEEeC-CCCHHHHHHHHHHHHh
Q 042504 71 ATAEAIDLVRGACVNHGFFQVINH-GVDASLLKAAIEETDS 110 (286)
Q Consensus 71 ~~~~~~~~l~~A~~~~GfF~v~nh-Gi~~~l~~~~~~~~~~ 110 (286)
.+.+++++|.+.++++-+++++++ |++...+.++....+.
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 456777788888888766666664 7777777666666554
No 65
>PRK06357 hypothetical protein; Provisional
Probab=34.55 E-value=60 Score=27.80 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhc------cEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNH------GFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~------GfF~v~nhGi~ 97 (286)
.+|++.+... ++ +++++.+.+++++. ..+.+.|||+=
T Consensus 130 ~i~~~p~~~~--gs----~ela~~v~~~l~~~~~~~~~~~vLl~nHGvv 172 (216)
T PRK06357 130 KIPTLPFAPA--TS----PELAEIVRKHLIELGDKAVPSAFLLNSHGIV 172 (216)
T ss_pred CcceecccCC--Cc----HHHHHHHHHHHhhcCcccCCCEEEECCCCCe
Confidence 4677766543 23 36677777777764 48899999973
No 66
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=34.55 E-value=33 Score=24.42 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=16.8
Q ss_pred HHHHHhhhccEEEEEeCCCC
Q 042504 78 LVRGACVNHGFFQVINHGVD 97 (286)
Q Consensus 78 ~l~~A~~~~GfF~v~nhGi~ 97 (286)
.|..-|.+.||.||..|-+.
T Consensus 37 ~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 37 PIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred HHHHHHHhcceEEEEeeeec
Confidence 47888999999999887664
No 67
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=33.94 E-value=47 Score=28.26 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGV 96 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi 96 (286)
.||++.+.... +. ++++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~g--s~----~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG--ST----KLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC--hH----HHHHHHHHHhhhCCEEehhcCCC
Confidence 46777666432 22 45677778888889999999996
No 68
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=33.57 E-value=91 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhccEEEEEe-CCCCHHHHHHHHHHHHh
Q 042504 72 TAEAIDLVRGACVNHGFFQVIN-HGVDASLLKAAIEETDS 110 (286)
Q Consensus 72 ~~~~~~~l~~A~~~~GfF~v~n-hGi~~~l~~~~~~~~~~ 110 (286)
+.+.+++|++.+.++-.++|++ +|++...++++.+..|.
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 5678899999999988777765 79999999988887654
No 69
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=33.47 E-value=32 Score=22.96 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=23.8
Q ss_pred CccccccccCCce---EEE-------ecCCCCceEEE-eCCeEEEec
Q 042504 236 TLGTGPHYDPNSL---TIL-------HQEQVEGLEVF-SNNKWQTIR 271 (286)
Q Consensus 236 ~~g~~~HtD~~~l---TlL-------~qd~v~GLqV~-~~g~W~~V~ 271 (286)
.-|.-+-+|..++ |+| +|--+.-|||+ -||.|.+|.
T Consensus 15 snG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 15 SNGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CCccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhcc
Confidence 3466777785554 455 23235779997 489999885
No 70
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=32.84 E-value=1e+02 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=32.9
Q ss_pred cCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCC
Q 042504 51 QEELREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHG 95 (286)
Q Consensus 51 ~~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhG 95 (286)
.+...||||-+|-.....++..-++.++|+++-++ | ..|+.-|
T Consensus 128 ~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSG 170 (268)
T COG3384 128 FPDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASG 170 (268)
T ss_pred CCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecC
Confidence 36789999999987765677788899999998888 6 4444444
No 71
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=32.16 E-value=60 Score=20.81 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhh
Q 042504 177 RKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFF 215 (286)
Q Consensus 177 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 215 (286)
.-...+++++.........-.+.||..|||+...+...|
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccCH
Confidence 345788888888777888889999999999987766665
No 72
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=31.70 E-value=2e+02 Score=20.81 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhccEEEEE-eCCCCHHHHHHHHHHHHhh
Q 042504 70 RATAEAIDLVRGACVNHGFFQVI-NHGVDASLLKAAIEETDSI 111 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~GfF~v~-nhGi~~~l~~~~~~~~~~F 111 (286)
+.+++++++|.+.+.++=.++|+ .+|++...+.++....+..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 45678889999999988555555 5799998888888776654
No 73
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=31.37 E-value=1.1e+02 Score=25.15 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhccEEEEEe-CCCCHHHHHHHHHHHHh
Q 042504 72 TAEAIDLVRGACVNHGFFQVIN-HGVDASLLKAAIEETDS 110 (286)
Q Consensus 72 ~~~~~~~l~~A~~~~GfF~v~n-hGi~~~l~~~~~~~~~~ 110 (286)
+.+.+++|.+.+.++-.++|++ .|++...++++.+..+.
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 5678889999999998777775 69999988888887664
No 74
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=31.37 E-value=56 Score=27.94 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=25.4
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHh--hhccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGAC--VNHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~--~~~GfF~v~nhGi~ 97 (286)
.||++.+... +++ ++++.+.+++ .+...+.+.|||+-
T Consensus 130 ~ip~~~y~~~--g~~----ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 130 PIPVGPFALI--GDE----AIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred CeeccCCcCC--CcH----HHHHHHHHHhCcCCCCEEEECCCCce
Confidence 5777766543 232 4566777777 67788999999974
No 75
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=72 Score=24.85 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=30.8
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEE
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQV 91 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v 91 (286)
-+|-+.|++.+.. ++....+++++++.-.+++|-+.+
T Consensus 64 GNIvIaDit~l~~-d~~~~~~V~e~lr~~a~~~ggdi~ 100 (124)
T COG2450 64 GNIVIADITPLER-DDDLFERVIEELRDTAEEVGGDIA 100 (124)
T ss_pred CCEEEEEcCCccc-ChhHHHHHHHHHHHHHHHhCchhh
Confidence 3788999999976 777889999999999999886543
No 76
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=30.58 E-value=1.5e+02 Score=25.44 Aligned_cols=62 Identities=24% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCCCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhc---cEEEEEeCCC-----CHHHHHHHHHHHHhhcCCCHHHHh
Q 042504 52 EELREPLIDLHGFLSGDERATAEAIDLVRGACVNH---GFFQVINHGV-----DASLLKAAIEETDSIFKLPLERKL 120 (286)
Q Consensus 52 ~~~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~---GfF~v~nhGi-----~~~l~~~~~~~~~~FF~lp~eeK~ 120 (286)
..+.||+|+=.+.. .++.+.|.+|...+ =-+.|.|||| .-+-...+-++-..+|++..+-|+
T Consensus 153 D~L~vPIIeNt~~E-------~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm~k 222 (238)
T KOG2631|consen 153 DTLVVPIIENTPSE-------SDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKMKK 222 (238)
T ss_pred ceEEEeeecCCchH-------HHHHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999876532 24456677777654 4567779997 244444555556667877666553
No 77
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=30.13 E-value=71 Score=29.59 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhc
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIF 112 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF 112 (286)
..+|.+|+..+...++ +...++.+++.++|+..|.|-.++.+.. .+.+++|.
T Consensus 99 ~~~~~~~~~~~~~~~d----~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG 150 (362)
T TIGR02410 99 LKDPSVHFKTTYDHTD----STLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERIS 150 (362)
T ss_pred ccCCceeHHHHhccCH----HHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhc
Confidence 3468889887765422 3467799999999999999988876544 34444554
No 78
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=30.12 E-value=1.5e+02 Score=27.24 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEe-CCCCHHHHHHHHHHHHh
Q 042504 70 RATAEAIDLVRGACVNHGFFQVIN-HGVDASLLKAAIEETDS 110 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~GfF~v~n-hGi~~~l~~~~~~~~~~ 110 (286)
+.+.+.+++|.+.+.++.+++|++ +|++...++++.+..|.
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 456677778888888887777775 57887777777766653
No 79
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=29.23 E-value=70 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.6
Q ss_pred ceeeCCCCCCCCHHHHHHHHHHHHHHhhh
Q 042504 57 PLIDLHGFLSGDERATAEAIDLVRGACVN 85 (286)
Q Consensus 57 PvIDl~~l~~~d~~~~~~~~~~l~~A~~~ 85 (286)
|+|-+.-....+.+.++++++.|.+++.+
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~ 30 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISA 30 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 55555543345777888888888887664
No 80
>PRK05834 hypothetical protein; Provisional
Probab=28.64 E-value=54 Score=27.56 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhcc--EEEEEeCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHG--FFQVINHGV 96 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~G--fF~v~nhGi 96 (286)
+||++...... + ..+..++.+.+++.+.. .+.+.|||+
T Consensus 121 ~ipv~~~~~~~--~--~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFD--D--WYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccc--h--HHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 47887654432 1 11234566777777644 899999996
No 81
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.70 E-value=77 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHhhhccEEEEEe
Q 042504 68 DERATAEAIDLVRGACVNHGFFQVIN 93 (286)
Q Consensus 68 d~~~~~~~~~~l~~A~~~~GfF~v~n 93 (286)
+.+.|++..++|+..|++.|| .|.+
T Consensus 70 ~~~~r~~~y~kI~~~~~~~gf-~v~D 94 (130)
T PF04914_consen 70 SKEMRQEYYKKIKYQLKSQGF-NVAD 94 (130)
T ss_dssp -HHHHHHHHHHHHHHHHTTT---EEE
T ss_pred CHHHHHHHHHHHHHHHHHCCC-EEEe
Confidence 468899999999999999999 7765
No 82
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.60 E-value=49 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=13.4
Q ss_pred ccCCceEEEecCCCCceEEE
Q 042504 243 YDPNSLTILHQEQVEGLEVF 262 (286)
Q Consensus 243 tD~~~lTlL~qd~v~GLqV~ 262 (286)
..+|.+||..||+ .=.|+.
T Consensus 13 i~yGsV~iiiqdG-~vvQIe 31 (38)
T PF10055_consen 13 IRYGSVTIIIQDG-RVVQIE 31 (38)
T ss_pred CCcceEEEEEECC-EEEEEE
Confidence 4689999999986 334444
No 83
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=26.25 E-value=87 Score=27.04 Aligned_cols=43 Identities=12% Similarity=-0.123 Sum_probs=24.5
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhc-------cEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNH-------GFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~-------GfF~v~nhGi~ 97 (286)
.||+++...-..-......+.++.+.+++++. ..+.+.|||+-
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~v 173 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGPF 173 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCce
Confidence 57887654311000001135566777777754 47889999973
No 84
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=26.15 E-value=61 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=26.0
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhh-hccEEEEEeCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACV-NHGFFQVINHGV 96 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~-~~GfF~v~nhGi 96 (286)
.||+++.- .+. +++++.+.++++ +...+.+.|||+
T Consensus 137 ~vpv~~~~---~~~----~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENH---ADI----PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCC---CCH----HHHHHHHHHHhccCCcEEEECCCce
Confidence 47887621 122 378888999987 888999999996
No 85
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=26.11 E-value=62 Score=20.79 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCCC
Q 042504 76 IDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKLP 115 (286)
Q Consensus 76 ~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~lp 115 (286)
++.|...+...||......|+-.....++....+.++.|+
T Consensus 5 v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 5 VKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 5678899999999855555676777777788788888776
No 86
>COG1741 Pirin-related protein [General function prediction only]
Probab=25.90 E-value=1.3e+02 Score=27.01 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.4
Q ss_pred CCCCccccccccCCceEEEec------CCCCceEEEeCC
Q 042504 233 SALTLGTGPHYDPNSLTILHQ------EQVEGLEVFSNN 265 (286)
Q Consensus 233 ~~~~~g~~~HtD~~~lTlL~q------d~v~GLqV~~~g 265 (286)
|...++-.+|.|..+||.+++ |..+.-++.+.|
T Consensus 53 pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pG 91 (276)
T COG1741 53 PGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPG 91 (276)
T ss_pred CCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeeccc
Confidence 434577889999999999976 555555555443
No 87
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=25.55 E-value=1.4e+02 Score=22.31 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=32.4
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHH
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLL 101 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~ 101 (286)
.+--||++++..=|...-. +.-.+.+-|+..|. .|.-+|+|+.+.
T Consensus 40 ~~~~idLs~v~rvDSaglA-LL~~~~~~~k~~g~-~~~L~~~p~~L~ 84 (99)
T COG3113 40 DTVRIDLSGVSRVDSAGLA-LLLHLIRLAKKQGN-AVTLTGVPEQLR 84 (99)
T ss_pred CeEEEehhhcceechHHHH-HHHHHHHHHHHcCC-eeEEecCcHHHH
Confidence 5677899988655544444 44457778888888 778889998654
No 88
>PLN02433 uroporphyrinogen decarboxylase
Probab=25.54 E-value=1.8e+02 Score=26.68 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhccEEEEEeCCCC----HHHHHHHHHHHHhhc
Q 042504 66 SGDERATAEAIDLVRGACVNHGFFQVINHGVD----ASLLKAAIEETDSIF 112 (286)
Q Consensus 66 ~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~----~~l~~~~~~~~~~FF 112 (286)
.+++++-.+.++++.+++..-||+.=.+|||+ .+-++.+.++++++-
T Consensus 288 ~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 288 FGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 56776666666667776666787777789986 577888888888753
No 89
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=24.81 E-value=2.5e+02 Score=23.20 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEe-CCCCHHHHHHHHHHHHh
Q 042504 70 RATAEAIDLVRGACVNHGFFQVIN-HGVDASLLKAAIEETDS 110 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~GfF~v~n-hGi~~~l~~~~~~~~~~ 110 (286)
+.+.++.+.|.+.+++...|.|++ +|++...+.++....|+
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 456778888999999887777776 69998888888877765
No 90
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=24.45 E-value=2.2e+02 Score=24.11 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCCCccccccccCCceEEEe-cCCCCceEEE--eCCeEEEeccCCCcEEEecCCCC
Q 042504 233 SALTLGTGPHYDPNSLTILH-QEQVEGLEVF--SNNKWQTIRPRSDALVINIGDTF 285 (286)
Q Consensus 233 ~~~~~g~~~HtD~~~lTlL~-qd~v~GLqV~--~~g~W~~V~p~pg~~vVNiGD~l 285 (286)
|.+.+|++ |..|-++ .+.-+|-|+. ..-.|.+.. .....++..||.+
T Consensus 150 PaGSVgIa-----g~qt~IYp~~sPGGW~iIGrTp~~lfd~~-~~~p~ll~~GD~V 199 (202)
T TIGR00370 150 PAGSVGIG-----GLQTGVYPISTPGGWQLIGKTPLALFDPQ-ENPPTLLRAGDIV 199 (202)
T ss_pred CCceeEEc-----ccceEEEccCCCCcceEeeecchhhhCCC-CCCCcccCCCCEE
Confidence 44555555 4466677 5778888884 344454432 2344688888865
No 91
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=24.14 E-value=77 Score=29.71 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhccEEEEE--eCCCCH
Q 042504 70 RATAEAIDLVRGACVNHGFFQVI--NHGVDA 98 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~GfF~v~--nhGi~~ 98 (286)
++..+++.+|.+||++.|+.+|+ .||-.+
T Consensus 432 EatD~aig~Iy~A~~~~~y~lvvTADHGNAE 462 (531)
T KOG4513|consen 432 EATDEAIGKIYDAIEQVGYILVVTADHGNAE 462 (531)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEcCCCCHH
Confidence 34567788999999999999998 477543
No 92
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=24.05 E-value=95 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHhhhccEEEEEeCCCCHHHHHHHHHHHH
Q 042504 80 RGACVNHGFFQVINHGVDASLLKAAIEETD 109 (286)
Q Consensus 80 ~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~ 109 (286)
.+++++.|||.|.| +|.+++.++.+.+.
T Consensus 18 l~~lEDlGyycvDN--LPp~Llp~~~~~~~ 45 (286)
T COG1660 18 LRVLEDLGYYCVDN--LPPQLLPKLADLML 45 (286)
T ss_pred HHHHHhcCeeeecC--CCHHHHHHHHHHHh
Confidence 46789999999999 99999998888554
No 93
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=23.94 E-value=1.8e+02 Score=25.75 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=36.2
Q ss_pred CCCceeeCCCCCCCCHHHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcCC
Q 042504 54 LREPLIDLHGFLSGDERATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFKL 114 (286)
Q Consensus 54 ~~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~l 114 (286)
++|-=+||+...+ . +..++|++|+.++|+..+.|-.++. +...+.++.|-.+
T Consensus 14 aev~g~dl~~~l~--~----~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 14 AQISGIDLTRPLS--D----NQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred eEEeCcccCCcCC--H----HHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 3455577765322 2 3467799999999999999988875 5556666677654
No 94
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=23.93 E-value=90 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhcc--EEEEEe------CCCCHHHHHHHHHHHHh
Q 042504 75 AIDLVRGACVNHG--FFQVIN------HGVDASLLKAAIEETDS 110 (286)
Q Consensus 75 ~~~~l~~A~~~~G--fF~v~n------hGi~~~l~~~~~~~~~~ 110 (286)
..+.|.+.++++| .+.+.. |||+.+.+..+++..++
T Consensus 25 ~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 25 QLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 3556777777776 777664 67888888887776543
No 95
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=23.39 E-value=77 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhcc---EEEEEeCCC
Q 042504 73 AEAIDLVRGACVNHG---FFQVINHGV 96 (286)
Q Consensus 73 ~~~~~~l~~A~~~~G---fF~v~nhGi 96 (286)
+++++.+.+++.+.. .+.|.|||+
T Consensus 145 ~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 145 ARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 467888888988864 899999996
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=22.22 E-value=81 Score=25.94 Aligned_cols=43 Identities=7% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHHHHhhcC
Q 042504 70 RATAEAIDLVRGACVNHGFFQVINHGVDASLLKAAIEETDSIFK 113 (286)
Q Consensus 70 ~~~~~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~~~~FF~ 113 (286)
...+++++.|.+|+.+-|- .-.-|||+++.++.++..+..||.
T Consensus 7 ~~~~~~~~~i~~al~~G~t-lk~l~gis~~~le~iY~~Ay~~y~ 49 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGAT-LKDVHGIPQDMMDGLYAHAYEFYN 49 (165)
T ss_pred hhHHHHHHHHHHHHHCCCC-HHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3456778889999887332 223589999999999999999995
No 97
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=22.00 E-value=1.2e+02 Score=19.29 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHhhc
Q 042504 177 RKRWIYQKYCQAMWKLSGVLFELLAMSLGVDRKHYKKFFE 216 (286)
Q Consensus 177 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~ 216 (286)
.-...+++++.........-+..||..+|++..-+...|.
T Consensus 10 ~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 10 EQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 3467788888887777888899999999999877776664
No 98
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=21.47 E-value=4.6e+02 Score=21.45 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=33.8
Q ss_pred ccccccccC----CceEEEec----CCCCceEEEeC----CeEEEeccCCCcEEEecCCC
Q 042504 237 LGTGPHYDP----NSLTILHQ----EQVEGLEVFSN----NKWQTIRPRSDALVINIGDT 284 (286)
Q Consensus 237 ~g~~~HtD~----~~lTlL~q----d~v~GLqV~~~----g~W~~V~p~pg~~vVNiGD~ 284 (286)
.....|.|. ...|++.. |..+|+-++.. ..=+.|.+.||++|+-.|-.
T Consensus 85 r~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~ 144 (171)
T PF12851_consen 85 RCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAKR 144 (171)
T ss_pred cCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcccc
Confidence 347889998 77777765 23567666643 13378899999999988754
No 99
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=21.43 E-value=96 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=25.8
Q ss_pred CCceeeCCCCCCCCHHHHHHHHHHHHHHhh---hccEEEEEeCCCC
Q 042504 55 REPLIDLHGFLSGDERATAEAIDLVRGACV---NHGFFQVINHGVD 97 (286)
Q Consensus 55 ~iPvIDl~~l~~~d~~~~~~~~~~l~~A~~---~~GfF~v~nhGi~ 97 (286)
.||+++. ..+. .++++.+.++++ +...+.+.|||+=
T Consensus 126 ~vp~~~~---~~gs----~ela~~~~~~l~~~~~~~avll~nHGv~ 164 (193)
T TIGR03328 126 TIPIFEN---TQDI----ARLADSVAPYLEAYPDVPGVLIRGHGLY 164 (193)
T ss_pred EEeeecC---CCCh----HHHHHHHHHHHhcCCCCCEEEEcCCcce
Confidence 5888864 2333 357778888885 4789999999973
No 100
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=20.94 E-value=65 Score=21.52 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHcCCChhHHHHhh
Q 042504 179 RWIYQKYCQAMWK----LSGVLFELLAMSLGVDRKHYKKFF 215 (286)
Q Consensus 179 r~~~~~y~~~~~~----l~~~ll~~la~~Lgl~~~~~~~~~ 215 (286)
.+.|+++++...- ......+.||..|||++..+.-.|
T Consensus 13 ~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWf 53 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWM 53 (58)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeec
Confidence 4666677666554 777788899999999987665444
No 101
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=20.74 E-value=94 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=12.5
Q ss_pred eEEEeCCeEEEeccCC
Q 042504 259 LEVFSNNKWQTIRPRS 274 (286)
Q Consensus 259 LqV~~~g~W~~V~p~p 274 (286)
+||..+++|+.+.|.+
T Consensus 53 ~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 53 AEVYLEGGWVPVDPTP 68 (68)
T ss_pred EEEEECCCeEEEeCCC
Confidence 5676779999998864
No 102
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=20.62 E-value=88 Score=20.23 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=20.1
Q ss_pred CceEEEeCCeEEEeccCCCcEEEec
Q 042504 257 EGLEVFSNNKWQTIRPRSDALVINI 281 (286)
Q Consensus 257 ~GLqV~~~g~W~~V~p~pg~~vVNi 281 (286)
+|||++ .|=...|.|..+.++|||
T Consensus 19 ~Gle~~-rG~~qSvRp~~~~l~lNv 42 (52)
T PF08699_consen 19 GGLEAW-RGFFQSVRPTQGGLLLNV 42 (52)
T ss_dssp TTEEEE-EEEEEEEEEETTEEEEEE
T ss_pred CcEEEe-EeEEeeeEEcCCCCEEEE
Confidence 688887 467889999888899997
No 103
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=20.37 E-value=1.4e+02 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHhhhccEEEEEeC
Q 042504 68 DERATAEAIDLVRGACVNHGFFQVINH 94 (286)
Q Consensus 68 d~~~~~~~~~~l~~A~~~~GfF~v~nh 94 (286)
+++..+++.+-+.++|+++|.-.+-+|
T Consensus 69 ~~~~l~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 69 SPEELKEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp BHHHHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEeCcC
Confidence 456788999999999999999887654
No 104
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=20.35 E-value=1.3e+02 Score=21.09 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhccEEEEEeCCCCHHHHHHHHHH
Q 042504 74 EAIDLVRGACVNHGFFQVINHGVDASLLKAAIEE 107 (286)
Q Consensus 74 ~~~~~l~~A~~~~GfF~v~nhGi~~~l~~~~~~~ 107 (286)
++++.|.++++..||..=..||.-.+-..+++..
T Consensus 16 ~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 16 DVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 5678899999999998888888766555555543
Done!