Query 042506
Match_columns 90
No_of_seqs 141 out of 1038
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.3E-30 9.2E-35 213.0 8.2 89 1-90 49-141 (1153)
2 PLN03194 putative disease resi 99.9 4.5E-26 9.6E-31 158.2 6.4 67 1-72 64-131 (187)
3 PF01582 TIR: TIR domain; Int 99.8 4.4E-22 9.5E-27 131.2 0.4 83 1-83 38-122 (141)
4 smart00255 TIR Toll - interleu 99.6 1.6E-15 3.4E-20 98.4 8.6 77 3-80 40-117 (140)
5 PF13676 TIR_2: TIR domain; PD 98.9 1.4E-10 3E-15 72.0 0.1 54 2-60 34-87 (102)
6 PF08937 DUF1863: MTH538 TIR-l 96.6 0.0052 1.1E-07 39.8 4.7 51 5-60 58-108 (130)
7 KOG3678 SARM protein (with ste 93.1 0.2 4.4E-06 40.4 4.9 58 7-69 654-728 (832)
8 PF10137 TIR-like: Predicted n 70.5 5.4 0.00012 26.1 2.8 27 2-28 35-61 (125)
9 cd00138 PLDc Phospholipase D. 60.5 18 0.0004 23.5 4.0 29 3-31 18-46 (176)
10 PF13271 DUF4062: Domain of un 59.5 14 0.00031 21.9 3.0 29 4-32 39-67 (83)
11 PHA02456 zinc metallopeptidase 54.7 31 0.00068 22.7 4.1 46 13-60 58-105 (141)
12 PF14258 DUF4350: Domain of un 54.6 37 0.0008 19.1 4.1 42 11-55 27-68 (70)
13 PF10890 DUF2741: Protein of u 48.8 16 0.00034 22.0 1.9 33 57-89 11-43 (72)
14 cd03028 GRX_PICOT_like Glutare 40.9 15 0.00034 21.9 1.1 18 20-37 8-25 (90)
15 COG4916 Uncharacterized protei 39.3 17 0.00036 27.3 1.2 48 17-67 234-282 (329)
16 KOG1136 Predicted cleavage and 37.3 66 0.0014 25.3 4.1 59 15-74 192-256 (501)
17 KOG2792 Putative cytochrome C 34.7 45 0.00096 24.9 2.8 30 35-64 155-187 (280)
18 KOG3974 Predicted sugar kinase 33.3 1E+02 0.0023 23.2 4.5 35 17-51 99-133 (306)
19 PRK11263 cardiolipin synthase 32.7 76 0.0016 24.6 3.9 45 1-46 13-57 (411)
20 PF11214 Med2: Mediator comple 31.9 25 0.00054 22.6 1.0 17 29-45 68-84 (105)
21 PF02630 SCO1-SenC: SCO1/SenC; 31.6 62 0.0013 21.7 2.9 41 36-77 72-113 (174)
22 PLN02866 phospholipase D 30.6 90 0.002 27.6 4.3 57 3-60 341-405 (1068)
23 PF00319 SRF-TF: SRF-type tran 30.6 55 0.0012 18.1 2.1 15 14-28 29-43 (51)
24 PF11074 DUF2779: Domain of un 29.3 35 0.00076 22.3 1.4 35 7-43 60-94 (130)
25 COG4271 Predicted nucleotide-b 29.0 52 0.0011 23.8 2.3 29 2-30 118-146 (233)
26 PRK02228 V-type ATP synthase s 28.9 1.1E+02 0.0025 18.8 3.6 25 7-31 32-56 (100)
27 PTZ00187 succinyl-CoA syntheta 27.9 1.2E+02 0.0026 23.0 4.1 39 3-43 97-135 (317)
28 PF03479 DUF296: Domain of unk 27.7 29 0.00064 22.0 0.8 25 1-25 8-32 (120)
29 PRK05339 PEP synthetase regula 26.8 78 0.0017 23.4 2.9 50 4-55 195-244 (269)
30 PF08357 SEFIR: SEFIR domain; 26.6 1.8E+02 0.0038 18.5 5.9 25 4-28 45-69 (150)
31 TIGR02887 spore_ger_x_C germin 25.9 1.1E+02 0.0024 22.7 3.7 49 18-69 93-141 (371)
32 TIGR01101 V_ATP_synt_F vacuola 25.4 93 0.002 20.1 2.8 26 6-31 47-72 (115)
33 cd04142 RRP22 RRP22 subfamily. 25.4 2.1E+02 0.0047 19.2 4.8 32 11-45 74-105 (198)
34 COG2077 Tpx Peroxiredoxin [Pos 25.2 52 0.0011 22.6 1.6 23 16-38 73-97 (158)
35 cd02986 DLP Dim1 family, Dim1- 25.1 1.2E+02 0.0026 19.5 3.3 56 11-74 5-65 (114)
36 PF05060 MGAT2: N-acetylglucos 24.6 1.7E+02 0.0037 22.6 4.5 38 15-60 56-93 (356)
37 PRK01642 cls cardiolipin synth 24.5 1.4E+02 0.003 23.5 4.1 35 7-41 319-353 (483)
38 PF13091 PLDc_2: PLD-like doma 24.4 1.7E+02 0.0037 17.6 4.4 20 11-30 1-20 (126)
39 PF11945 WASH_WAHD: WAHD domai 24.3 55 0.0012 24.5 1.8 18 11-28 65-82 (297)
40 KOG3043 Predicted hydrolase re 23.3 1.2E+02 0.0026 22.2 3.3 61 17-80 37-97 (242)
41 TIGR03707 PPK2_P_aer polyphosp 23.1 1.8E+02 0.0039 20.8 4.2 20 45-65 129-148 (230)
42 PRK05337 beta-hexosaminidase; 22.9 2.2E+02 0.0048 21.4 4.8 30 3-32 9-39 (337)
43 PF02939 UcrQ: UcrQ family; I 22.7 71 0.0015 19.3 1.8 30 57-86 14-43 (80)
44 PF12128 DUF3584: Protein of u 22.4 18 0.0004 31.6 -1.2 18 53-70 35-52 (1201)
45 PLN00125 Succinyl-CoA ligase [ 22.3 1.6E+02 0.0034 22.1 3.9 31 3-33 78-108 (300)
46 PF03618 Kinase-PPPase: Kinase 22.0 92 0.002 22.9 2.5 51 4-55 189-240 (255)
47 PRK11263 cardiolipin synthase 21.2 1.6E+02 0.0035 22.8 3.9 37 6-42 206-242 (411)
48 COG1999 Uncharacterized protei 21.1 1.8E+02 0.0038 20.3 3.8 57 17-75 66-127 (207)
49 PF14033 DUF4246: Protein of u 20.8 1.9E+02 0.0042 23.1 4.3 57 33-89 58-119 (501)
50 cd01857 HSR1_MMR1 HSR1/MMR1. 20.8 2.3E+02 0.005 17.8 5.6 52 8-62 2-53 (141)
51 cd00154 Rab Rab family. Rab G 20.7 2.1E+02 0.0045 17.2 5.4 50 10-63 65-117 (159)
52 PHA02087 hypothetical protein 20.6 36 0.00077 20.5 0.1 18 27-44 15-32 (83)
53 COG1533 SplB DNA repair photol 20.3 3.7E+02 0.0081 20.0 6.7 68 1-70 161-232 (297)
54 cd02953 DsbDgamma DsbD gamma f 20.2 1.3E+02 0.0027 17.8 2.6 23 10-37 3-25 (104)
55 PF03976 PPK2: Polyphosphate k 20.2 2E+02 0.0044 20.5 4.0 18 46-64 130-147 (228)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=4.3e-30 Score=213.00 Aligned_cols=89 Identities=44% Similarity=0.824 Sum_probs=83.9
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH 80 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~ 80 (90)
+++|+.|.+++++||++||++|||||+|||+|.|||+||++|++|+++.++ +|+||||+|+|++|++|+|.||++|.++
T Consensus 49 ~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~-~v~pvfy~v~p~~v~~~~g~f~~~f~~~ 127 (1153)
T PLN03210 49 IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQ-LVIPVFYGLDPSHVRKQTGDFGEAFEKT 127 (1153)
T ss_pred ccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCc-eEEEEEecccHHHHhhccchHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhH----hhhhcC
Q 042506 81 EEFF----RQIWKR 90 (90)
Q Consensus 81 ~~~~----~~~w~~ 90 (90)
+++. .++||.
T Consensus 128 ~~~~~~~~~~~w~~ 141 (1153)
T PLN03210 128 CQNKTEDEKIQWKQ 141 (1153)
T ss_pred hcccchhHHHHHHH
Confidence 7653 378973
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.93 E-value=4.5e-26 Score=158.22 Aligned_cols=67 Identities=31% Similarity=0.576 Sum_probs=62.3
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhc-cch
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQ-TRH 72 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q-~g~ 72 (90)
+++|+.|.+.|.+||++|+++|+|||+||++|.|||+||++|+++. . .||||||+|+|++|++| .|.
T Consensus 64 l~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~-~ViPIFY~VdPsdVr~q~~~~ 131 (187)
T PLN03194 64 MKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----K-RVIPIFCDVKPSQLRVVDNGT 131 (187)
T ss_pred ccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----C-EEEEEEecCCHHHhhccccCC
Confidence 4689999999999999999999999999999999999999999863 4 89999999999999997 554
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=4.4e-22 Score=131.16 Aligned_cols=83 Identities=39% Similarity=0.573 Sum_probs=73.8
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCC-CCeEEEEEeecCcchhh-hccchHHHHHH
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTND-QPMVYLIFYDVEPTMLR-KQTRHFQEALA 78 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~-~~~vipIfy~v~ps~v~-~q~g~~~~~f~ 78 (90)
+.||..+.+++.++|++||++|+|||+||++|.||++||..+++++.+.+ ..+|+|+||+++++++. .+++.|+..|.
T Consensus 38 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~ 117 (141)
T PF01582_consen 38 FLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFL 117 (141)
T ss_dssp TSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCT
T ss_pred hcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhh
Confidence 46899999999999999999999999999999999999999999986644 23999999999999999 79999999987
Q ss_pred HHHHh
Q 042506 79 KHEEF 83 (90)
Q Consensus 79 ~~~~~ 83 (90)
.+...
T Consensus 118 ~~~~w 122 (141)
T PF01582_consen 118 TYLRW 122 (141)
T ss_dssp HCEET
T ss_pred hheeC
Confidence 76553
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.64 E-value=1.6e-15 Score=98.38 Aligned_cols=77 Identities=44% Similarity=0.655 Sum_probs=68.3
Q ss_pred CCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhcc-CCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506 3 RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHT-NDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH 80 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~-~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~ 80 (90)
+|.....+|.++|++|++.|+|+|++|..|.||..|+..+.++..+ ... .||||+|+..|+.+..+.+.++..+..+
T Consensus 40 ~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~-~iIPI~~~~~~~~~~~~~~~l~~~~~~~ 117 (140)
T smart00255 40 PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGL-RVIPIFYEVIPSDVRKQPGKFRKVLKKN 117 (140)
T ss_pred cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCC-eEEEEEEecChHHHHhcccHHHHHHHHH
Confidence 4444455999999999999999999999999999999999998755 445 9999999988999999999999999876
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.94 E-value=1.4e-10 Score=71.99 Aligned_cols=54 Identities=30% Similarity=0.426 Sum_probs=46.4
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
.+|+.+.+.|.++|++|...|+++|++|..|.||..|+..+.+ .+. .|+||..+
T Consensus 34 ~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~-~iipv~~~ 87 (102)
T PF13676_consen 34 PPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGK-PIIPVRLD 87 (102)
T ss_dssp -TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSE-SEEEEECS
T ss_pred CCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCC-EEEEEEEC
Confidence 5799999999999999999999999999999999999998833 445 89999953
No 6
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.58 E-value=0.0052 Score=39.84 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 5 ESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 5 ~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
+.|...|-+.|..|..+||+.|++=..|.|+..|+..+++ .+. .||.|...
T Consensus 58 ~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~-~Ii~V~~~ 108 (130)
T PF08937_consen 58 EYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGK-PIIGVYLP 108 (130)
T ss_dssp TTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T----EEEEETT
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCC-CEEEEECC
Confidence 3667788889999999999999999999999999998877 334 67777653
No 7
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=93.08 E-value=0.2 Score=40.41 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhcceEEEEecCCccc--------chhhHHHHHHHHHhhccCCCCeEEEEEee---------cCcchhhhc
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTS--------STWCLDEVVYILECKHTNDQPMVYLIFYD---------VEPTMLRKQ 69 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~--------S~wcl~EL~~i~~~~~~~~~~~vipIfy~---------v~ps~v~~q 69 (90)
+.+.+++.|+..+..|.|+|||-.. -.|-..||..+.+|.+ .|||||-. +-|.|++--
T Consensus 654 FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K-----NIiPI~D~aFE~Pt~ed~iPnDirmi 728 (832)
T KOG3678|consen 654 FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK-----NIIPIFDTAFEFPTKEDQIPNDIRMI 728 (832)
T ss_pred ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC-----CeeeeecccccCCCchhcCcHHHHHH
Confidence 3568999999999999999999432 3466678888888775 89999832 566666543
No 8
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=70.53 E-value=5.4 Score=26.11 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCC
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRN 28 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~n 28 (90)
..|..+.+.+.+...++..+|++++|+
T Consensus 35 ~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 35 NLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CCCCchHHHHHHHhccCCEEEEEEccc
Confidence 368888899999999999999999996
No 9
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=60.45 E-value=18 Score=23.47 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCCcccHHHHHHHHhcceEEEEecCCccc
Q 042506 3 RGESISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
.|+++.+.+.++|..++..|.+.+..|..
T Consensus 18 ~~~~~~~~i~~~I~~A~~~I~i~~~~~~~ 46 (176)
T cd00138 18 GGRSDLDALLEAISNAKKSIYIASFYLSP 46 (176)
T ss_pred CcchHHHHHHHHHHhhheEEEEEEeEecc
Confidence 46777889999999999999999997765
No 10
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=59.51 E-value=14 Score=21.87 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHhcceEEEEecCCcccc
Q 042506 4 GESISPSLLKAIEDSRISIIVLSRNYTSS 32 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S 32 (90)
+....+.+++.|++|.+.|.++...|-..
T Consensus 39 ~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 39 DQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 44555688889999999999998888654
No 11
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=54.75 E-value=31 Score=22.73 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHhcceEEEEecCCcccchhhHHHHHHHHHhh--ccCCCCeEEEEEee
Q 042506 13 KAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK--HTNDQPMVYLIFYD 60 (90)
Q Consensus 13 ~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~--~~~~~~~vipIfy~ 60 (90)
.-...|-.+.+++-|||++.. |.+-|..-+.+. -+.=. .|.||-|-
T Consensus 58 ~~LCG~~~~~i~IDP~~~~KG-C~~TL~HEL~H~WQ~RsYG-~i~PITY~ 105 (141)
T PHA02456 58 QDLCGQFVGWIEIDPDYANKG-CRDTLAHELNHAWQFRTYG-LVQPITYA 105 (141)
T ss_pred cchhhcceeEEEECCcccccc-hHHHHHHHHHHHHhhhccc-eeeeeehh
Confidence 345678899999999999976 887665544432 22223 79999885
No 12
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=54.57 E-value=37 Score=19.11 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEE
Q 042506 11 LLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVY 55 (90)
Q Consensus 11 i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vi 55 (90)
...+++...-+++++++++.-+. -.++..+.+..+.+++ .||
T Consensus 27 ~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~-lvl 68 (70)
T PF14258_consen 27 PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNT-LVL 68 (70)
T ss_pred cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCE-EEE
Confidence 34566678889999999966554 3566666666666665 544
No 13
>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex. The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.
Probab=48.85 E-value=16 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=27.1
Q ss_pred EEeecCcchhhhccchHHHHHHHHHHhHhhhhc
Q 042506 57 IFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWK 89 (90)
Q Consensus 57 Ify~v~ps~v~~q~g~~~~~f~~~~~~~~~~w~ 89 (90)
|.|-++|.+..--.|.|.+.=.+...++++.|.
T Consensus 11 VvY~LSP~qq~Vm~GLwKDlp~ki~hk~~enwv 43 (72)
T PF10890_consen 11 VVYALSPFQQKVMPGLWKDLPKKIHHKFSENWV 43 (72)
T ss_pred heeeeChhhhhhhhhhhhhcHHHHHHHHhhcce
Confidence 578899999888899888877777777888884
No 14
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=40.93 E-value=15 Score=21.89 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=13.0
Q ss_pred eEEEEecCCcccchhhHH
Q 042506 20 ISIIVLSRNYTSSTWCLD 37 (90)
Q Consensus 20 ~~IvV~S~ny~~S~wcl~ 37 (90)
.-|+|||+.+.+..||-+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~ 25 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGF 25 (90)
T ss_pred CCEEEEEcCCCCCCCCcH
Confidence 357788888877777754
No 15
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=39.29 E-value=17 Score=27.33 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=32.9
Q ss_pred hcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEe-ecCcchhh
Q 042506 17 DSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFY-DVEPTMLR 67 (90)
Q Consensus 17 ~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy-~v~ps~v~ 67 (90)
.++..+|.+..||....||..|...+.+-.. .+...||.| .++-+.+.
T Consensus 234 rC~~~~VF~~~~Y~~K~~c~~E~~~~r~~~~---~d~~~rI~~~~~d~~a~d 282 (329)
T COG4916 234 RCVVTTVFNTGSYICKSTCHIEGLEGRLNPI---LDTGFRIKYLYADNIAID 282 (329)
T ss_pred eEEEEEEEeCCceEEeeeeccchhhcccccc---ccccceEEEEecCCcccc
Confidence 5778889999999999999999988755321 114455554 35544443
No 16
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=37.34 E-value=66 Score=25.31 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHhcceEEEEecCCcc----cchhhHH-H-HHHHHHhhccCCCCeEEEEEeecCcchhhhccchHH
Q 042506 15 IEDSRISIIVLSRNYT----SSTWCLD-E-VVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQ 74 (90)
Q Consensus 15 I~~Sr~~IvV~S~ny~----~S~wcl~-E-L~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~ 74 (90)
|...|-.+.+--..|+ .|+.|.+ | |.+.++|...++. ++||||--....++.-....|.
T Consensus 192 id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGk-vlIPvFALGRAQElCiLLd~YW 256 (501)
T KOG1136|consen 192 IDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGK-VLIPVFALGRAQELCILLDDYW 256 (501)
T ss_pred hccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCe-EEEEeeecchHHHHHHHHHHHH
Confidence 5566666666655665 4788877 4 4566789888888 9999996544444443333443
No 17
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=34.67 E-value=45 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=20.8
Q ss_pred hHHHHHHHHHh---hccCCCCeEEEEEeecCcc
Q 042506 35 CLDEVVYILEC---KHTNDQPMVYLIFYDVEPT 64 (90)
Q Consensus 35 cl~EL~~i~~~---~~~~~~~~vipIfy~v~ps 64 (90)
|-+||.++... .+......++|||--|||.
T Consensus 155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 88888776554 4443333677999999994
No 18
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=33.33 E-value=1e+02 Score=23.20 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=30.8
Q ss_pred hcceEEEEecCCcccchhhHHHHHHHHHhhccCCC
Q 042506 17 DSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQ 51 (90)
Q Consensus 17 ~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~ 51 (90)
-.|+..+|+-|.--.++|-+.++.++++..++++-
T Consensus 99 L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dv 133 (306)
T KOG3974|consen 99 LQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDV 133 (306)
T ss_pred HhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999999999998665543
No 19
>PRK11263 cardiolipin synthase 2; Provisional
Probab=32.70 E-value=76 Score=24.60 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK 46 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~ 46 (90)
|.-|++..+.++++|+.++.+|.+-+.-+..... -.+|..++...
T Consensus 13 l~~G~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~~-g~~l~~aL~~a 57 (411)
T PRK11263 13 LENGEQYYPRVFEAIAAAQEEILLETFILFEDKV-GKQLHAALLAA 57 (411)
T ss_pred EeCHHHHHHHHHHHHHHhCCEEEEEEEEEecCch-HHHHHHHHHHH
Confidence 4568899999999999999999988766655433 24555555443
No 20
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=31.93 E-value=25 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.6
Q ss_pred cccchhhHHHHHHHHHh
Q 042506 29 YTSSTWCLDEVVYILEC 45 (90)
Q Consensus 29 y~~S~wcl~EL~~i~~~ 45 (90)
|..|.||++.++.+-..
T Consensus 68 l~~sk~~v~~m~e~~q~ 84 (105)
T PF11214_consen 68 LNDSKWYVDTMVELKQK 84 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999998877543
No 21
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=31.62 E-value=62 Score=21.71 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEeecCcch-hhhccchHHHHH
Q 042506 36 LDEVVYILECKHTNDQPMVYLIFYDVEPTM-LRKQTRHFQEAL 77 (90)
Q Consensus 36 l~EL~~i~~~~~~~~~~~vipIfy~v~ps~-v~~q~g~~~~~f 77 (90)
+.+|..+++.+.+.+. .+-+||.-+||.. -......|.+.|
T Consensus 72 l~~l~~~~~~l~~~~~-~v~~v~ISvDP~~DTp~~L~~Y~~~~ 113 (174)
T PF02630_consen 72 LANLSQLQKQLGEEGK-DVQFVFISVDPERDTPEVLKKYAKKF 113 (174)
T ss_dssp HHHHHHHHHHHHHTTT-TEEEEEEESSTTTC-HHHHHHHHHCH
T ss_pred HHHHHHHHHHhhhccC-ceEEEEEEeCCCCCCHHHHHHHHHhc
Confidence 3456666666655555 7888898999973 434445555544
No 22
>PLN02866 phospholipase D
Probab=30.61 E-value=90 Score=27.59 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCcccHHHHHHHHhcceEEEE----ecCCc-cc---chhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 3 RGESISPSLLKAIEDSRISIIV----LSRNY-TS---STWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~~IvV----~S~ny-~~---S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
-|+....++.+||+.++-+|.+ |||.+ .. ....-..|..++....+.+- .|-.++|+
T Consensus 341 DG~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAkrGV-kVrVLLyD 405 (1068)
T PLN02866 341 DGHAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAKQGV-QIYILLYK 405 (1068)
T ss_pred CHHHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHHCCC-EEEEEEEC
Confidence 4677778999999999999999 77554 21 23445567777766545565 55555565
No 23
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=30.60 E-value=55 Score=18.06 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHhcceEEEEecCC
Q 042506 14 AIEDSRISIIVLSRN 28 (90)
Q Consensus 14 aI~~Sr~~IvV~S~n 28 (90)
-..+..++++|+||+
T Consensus 29 ~LC~~~v~~iv~~~~ 43 (51)
T PF00319_consen 29 TLCGVDVALIVFSPD 43 (51)
T ss_dssp HHHT-EEEEEEEETT
T ss_pred eecCCeEEEEEECCC
Confidence 456888999999987
No 24
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=29.34 E-value=35 Score=22.32 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHH
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYIL 43 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~ 43 (90)
+..++.++|..-.-+|+|++..|-.+ |+.||+.+.
T Consensus 60 ~~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~~ 94 (130)
T PF11074_consen 60 LIEALIKAIGSIYGSIVVYNKSFEKT--RLKELAELF 94 (130)
T ss_pred HHHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHHh
Confidence 34566667766668999999988766 899988774
No 25
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=28.99 E-value=52 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCCcc
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRNYT 30 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~ 30 (90)
..|..|.+.+.+.|.++..+|++.+|+=.
T Consensus 118 ~~g~~ile~lek~i~~v~FAi~latPDDk 146 (233)
T COG4271 118 SEGQTILESLEKYIAEVKFAIVLATPDDK 146 (233)
T ss_pred cccHHHHHHHHHHhhhceEEEEEecCccc
Confidence 36888889999999999999999999854
No 26
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=28.89 E-value=1.1e+02 Score=18.78 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=17.4
Q ss_pred ccHHHHHHHHhcceEEEEecCCccc
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
+...+.+.+.+-..+|++++++++.
T Consensus 32 ~~~~l~~l~~~~d~gII~Ite~~~~ 56 (100)
T PRK02228 32 LDEAVEEVLEDDDVGILVMHDDDLE 56 (100)
T ss_pred HHHHHHHHhhCCCEEEEEEehhHhH
Confidence 3334444556778999999998765
No 27
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=27.87 E-value=1.2e+02 Score=22.98 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHH
Q 042506 3 RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYIL 43 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~ 43 (90)
|.....+.+.++++.--..++++|..|.+.. +.++..++
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d--~~~l~~~~ 135 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHD--MVKVKHAL 135 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhh--HHHHHHHH
Confidence 4445567788888877788999999998866 45555443
No 28
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=27.72 E-value=29 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=18.3
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEe
Q 042506 1 LERGESISPSLLKAIEDSRISIIVL 25 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~ 25 (90)
|.||+.+.+.|.+..++-.+...++
T Consensus 8 l~~Gedl~~~l~~~~~~~~i~~~~i 32 (120)
T PF03479_consen 8 LDPGEDLLESLEAFAREHGIRSGVI 32 (120)
T ss_dssp EETTSBHHHHHHHHHHHHT-SSEEE
T ss_pred ECCCCHHHHHHHHHHHHCCCcEEEE
Confidence 4689999999988888777655554
No 29
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=26.78 E-value=78 Score=23.45 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEE
Q 042506 4 GESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVY 55 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vi 55 (90)
|=-|.++-+..|.+-|..-+=. .+|++=.-|..||..+-.-+++.+- .+|
T Consensus 195 GLtIdp~rL~~IR~~Rl~~lg~-s~Ya~~~~i~~El~~A~~l~~k~~~-pvI 244 (269)
T PRK05339 195 GLTIDPERLIEIRKERLPNLGL-SRYASLEQCREELAEAERLFRREGI-PVI 244 (269)
T ss_pred EEeCCHHHHHHHHHHHhcccCc-CcCCCHHHHHHHHHHHHHHHHHcCC-CEE
Confidence 5567888899999988855433 6899999999999999887665555 444
No 30
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.59 E-value=1.8e+02 Score=18.51 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=18.8
Q ss_pred CCcccHHHHHHHHhcceEEEEecCC
Q 042506 4 GESISPSLLKAIEDSRISIIVLSRN 28 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S~n 28 (90)
+.....=+.++++++...|+|.|+.
T Consensus 45 ~~g~~~W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 45 RQGPPRWMERQIREADKVLIVCSPG 69 (150)
T ss_pred cCCHHHHHHHHHhcCCEEEEEeccc
Confidence 3344455677899999999999954
No 31
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=25.93 E-value=1.1e+02 Score=22.73 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=32.2
Q ss_pred cceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhc
Q 042506 18 SRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQ 69 (90)
Q Consensus 18 Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q 69 (90)
+..-++|||+++|..+ +.++.-.+.+..+.+. .+.....+-++.++-..
T Consensus 93 ~h~~vilige~lA~~g--i~~~lD~l~R~~~~r~-~~~v~v~~g~a~dil~~ 141 (371)
T TIGR02887 93 GHLRVIVFGEKLARDG--IEEVLDFLIRDPEIRR-TIYIAVTDGKAEELLKT 141 (371)
T ss_pred hceEEEEEeHHHHhhC--HHHhhhHHhcChhhcc-cEEEEEECCcHHHHhcc
Confidence 6678999999999965 5565555555444455 45544556577776643
No 32
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=25.36 E-value=93 Score=20.07 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=18.4
Q ss_pred cccHHHHHHHHhcceEEEEecCCccc
Q 042506 6 SISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 6 ~i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
++...+-+.+.+..++|+++++++++
T Consensus 47 ei~~~~~~~l~~~digIIlIte~~a~ 72 (115)
T TIGR01101 47 EIEDCFNRFLKRDDIAIILINQHIAE 72 (115)
T ss_pred HHHHHHHHHhhcCCeEEEEEcHHHHH
Confidence 33334444477899999999998765
No 33
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=25.35 E-value=2.1e+02 Score=19.24 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.8
Q ss_pred HHHHHHhcceEEEEecCCcccchhhHHHHHHHHHh
Q 042506 11 LLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILEC 45 (90)
Q Consensus 11 i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~ 45 (90)
...+++.+...|+|++.+ +..-++++....+.
T Consensus 74 ~~~~~~~ad~iilv~D~~---~~~S~~~~~~~~~~ 105 (198)
T cd04142 74 RFRGLRNSRAFILVYDIC---SPDSFHYVKLLRQQ 105 (198)
T ss_pred HHhhhccCCEEEEEEECC---CHHHHHHHHHHHHH
Confidence 445688999999999975 45555555554443
No 34
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=52 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=18.4
Q ss_pred HhcceEEEEecCC--cccchhhHHH
Q 042506 16 EDSRISIIVLSRN--YTSSTWCLDE 38 (90)
Q Consensus 16 ~~Sr~~IvV~S~n--y~~S~wcl~E 38 (90)
+-....+..+|-| |+.+.||-.|
T Consensus 73 ~~~~~~Vl~IS~DLPFAq~RfC~ae 97 (158)
T COG2077 73 KLGNTVVLCISMDLPFAQKRFCGAE 97 (158)
T ss_pred ccCCcEEEEEeCCChhHHhhhhhhc
Confidence 3445788889998 9999999765
No 35
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=25.08 E-value=1.2e+02 Score=19.53 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=31.6
Q ss_pred HHHHHH--hcceEEEEecCCcccchhhHH--HHHHHHHhhc-cCCCCeEEEEEeecCcchhhhccchHH
Q 042506 11 LLKAIE--DSRISIIVLSRNYTSSTWCLD--EVVYILECKH-TNDQPMVYLIFYDVEPTMLRKQTRHFQ 74 (90)
Q Consensus 11 i~~aI~--~Sr~~IvV~S~ny~~S~wcl~--EL~~i~~~~~-~~~~~~vipIfy~v~ps~v~~q~g~~~ 74 (90)
.-++|. +.++.|+-|+. .||.- .+.-+++.+. +-.. . .+||.|+..++..-...|+
T Consensus 5 ~d~~i~~~~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~-~--~~f~kVDVDev~dva~~y~ 65 (114)
T cd02986 5 VDQAIKSTAEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSK-M--ASIYLVDVDKVPVYTQYFD 65 (114)
T ss_pred HHHHHHhcCCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccC-c--eEEEEEeccccHHHHHhcC
Confidence 334555 45677777765 57744 3334444432 2223 3 5788888888776555444
No 36
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=24.60 E-value=1.7e+02 Score=22.63 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 15 IEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 15 I~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
.+.-..+++|||.+|-+ .|+..+++..+ -..|+.|||-
T Consensus 56 ~~~I~~~llifSHd~~~-----~ein~~v~~I~---Fc~v~QIf~P 93 (356)
T PF05060_consen 56 ARGIEEALLIFSHDFYS-----EEINDLVQSID---FCRVMQIFYP 93 (356)
T ss_pred hhCccceEEEEeccCCh-----HHHHHHHHhCC---cceeEEEecc
Confidence 35556799999999966 45655554321 2268999874
No 37
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=24.49 E-value=1.4e+02 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=26.2
Q ss_pred ccHHHHHHHHhcceEEEEecCCcccchhhHHHHHH
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVY 41 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~ 41 (90)
+...+.++|..++..|.+.+|-|..+.--++.|..
T Consensus 319 ~~~~~~~~I~~A~~~I~I~tpYfip~~~i~~aL~~ 353 (483)
T PRK01642 319 IHQFLLTAIYSARERLWITTPYFVPDEDLLAALKT 353 (483)
T ss_pred HHHHHHHHHHHhccEEEEEcCCcCCCHHHHHHHHH
Confidence 34467889999999999999999877644444433
No 38
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=24.45 E-value=1.7e+02 Score=17.57 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHHHHhcceEEEEecCCcc
Q 042506 11 LLKAIEDSRISIIVLSRNYT 30 (90)
Q Consensus 11 i~~aI~~Sr~~IvV~S~ny~ 30 (90)
|.++|+.++..|.+.++.+.
T Consensus 1 l~~~i~~A~~~i~i~~~~~~ 20 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT 20 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-
T ss_pred CHHHHhccCCEEEEEEEecC
Confidence 56789999999999999883
No 39
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=24.26 E-value=55 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHhcceEEEEecCC
Q 042506 11 LLKAIEDSRISIIVLSRN 28 (90)
Q Consensus 11 i~~aI~~Sr~~IvV~S~n 28 (90)
=+++|.+|+++|.|||+.
T Consensus 65 Ki~~l~gs~kAi~vfs~a 82 (297)
T PF11945_consen 65 KIEKLQGSKKAITVFSPA 82 (297)
T ss_pred HHHHHhCCCccEEEeCcc
Confidence 356788999999999986
No 40
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=23.31 E-value=1.2e+02 Score=22.23 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=42.0
Q ss_pred hcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506 17 DSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH 80 (90)
Q Consensus 17 ~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~ 80 (90)
.+.+.|++|+.=|--+.-...+....+ ...+-.+++|=||.-+|-....|...+.+-+..|
T Consensus 37 ~~~~~li~i~DvfG~~~~n~r~~Adk~---A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~ 97 (242)
T KOG3043|consen 37 SSKKVLIVIQDVFGFQFPNTREGADKV---ALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGH 97 (242)
T ss_pred CCCeEEEEEEeeeccccHHHHHHHHHH---hcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcC
Confidence 345789999998877655444444443 3345558999999999988888877666554443
No 41
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=23.14 E-value=1.8e+02 Score=20.85 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=15.3
Q ss_pred hhccCCCCeEEEEEeecCcch
Q 042506 45 CKHTNDQPMVYLIFYDVEPTM 65 (90)
Q Consensus 45 ~~~~~~~~~vipIfy~v~ps~ 65 (90)
.+.+.+- .||=+|+++++..
T Consensus 129 ~L~~~G~-~IlKfflhIsk~e 148 (230)
T TIGR03707 129 MLVRDGI-HLFKYWLSVSREE 148 (230)
T ss_pred HHHHCCC-EEEEEEEECCHHH
Confidence 3456777 9999999998654
No 42
>PRK05337 beta-hexosaminidase; Provisional
Probab=22.89 E-value=2.2e+02 Score=21.43 Aligned_cols=30 Identities=13% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCCcccHHHHHHHHhcce-EEEEecCCcccc
Q 042506 3 RGESISPSLLKAIEDSRI-SIIVLSRNYTSS 32 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~-~IvV~S~ny~~S 32 (90)
+|..+++...+.|++-++ .|++|++|+.+-
T Consensus 9 ~g~~~~~~~~~~i~~~~~gGvilf~~n~~~~ 39 (337)
T PRK05337 9 AGTELTAEERERLQHPLVGGVILFARNFEDP 39 (337)
T ss_pred CCCCCCHHHHHHHHccCceEEEEECCCCCCH
Confidence 588888888888887665 788888998764
No 43
>PF02939 UcrQ: UcrQ family; InterPro: IPR004205 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multi-enzyme complex [], which recognises a mitochondrial targeting presequence. The bc1 complex contains 11 subunits: 3 respiratory subunits (cytochrome b, cytochrome c1 and Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 9.5 kDa subunit of the complex. This subunit together with cytochrome B binds to ubiquinone.; GO: 0008121 ubiquinol-cytochrome-c reductase activity; PDB: 1L0N_G 1SQQ_G 1PP9_G 1PPJ_T 2FYU_G 2BCC_G 1BCC_G 2A06_G 1NTZ_G 2YBB_g ....
Probab=22.70 E-value=71 Score=19.32 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=22.0
Q ss_pred EEeecCcchhhhccchHHHHHHHHHHhHhh
Q 042506 57 IFYDVEPTMLRKQTRHFQEALAKHEEFFRQ 86 (90)
Q Consensus 57 Ify~v~ps~v~~q~g~~~~~f~~~~~~~~~ 86 (90)
|-|.++|-+-+...|.+.+++-..-.++.+
T Consensus 14 ~tYslSP~eQr~~ag~~~~~i~N~~RR~~~ 43 (80)
T PF02939_consen 14 ITYSLSPFEQRPFAGAFSKGIFNTFRRFRS 43 (80)
T ss_dssp EEEEE-TTGB-SSTTTTTTHHHHHHHHHHH
T ss_pred EEEEeChhhhcccccchHhhHhHHHHHHHH
Confidence 568999999999999988877776666543
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.36 E-value=18 Score=31.60 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.0
Q ss_pred eEEEEEeecCcchhhhcc
Q 042506 53 MVYLIFYDVEPTMLRKQT 70 (90)
Q Consensus 53 ~vipIfy~v~ps~v~~q~ 70 (90)
+.||+||+-+|+.|-+.+
T Consensus 35 Rlip~FYGa~p~rlv~k~ 52 (1201)
T PF12128_consen 35 RLIPFFYGADPSRLVPKT 52 (1201)
T ss_pred HHHHHhcCCCccccCCcc
Confidence 789999999999975443
No 45
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=22.26 E-value=1.6e+02 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.5
Q ss_pred CCCcccHHHHHHHHhcceEEEEecCCcccch
Q 042506 3 RGESISPSLLKAIEDSRISIIVLSRNYTSST 33 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~ 33 (90)
|.+.+.+.+.++.+.=-..++|+|..|.+..
T Consensus 78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g 108 (300)
T PLN00125 78 PPPFAAAAILEAMEAELDLVVCITEGIPQHD 108 (300)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCccc
Confidence 4445566777777766678999999999877
No 46
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=21.96 E-value=92 Score=22.85 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHhcceEEEEec-CCcccchhhHHHHHHHHHhhccCCCCeEE
Q 042506 4 GESISPSLLKAIEDSRISIIVLS-RNYTSSTWCLDEVVYILECKHTNDQPMVY 55 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S-~ny~~S~wcl~EL~~i~~~~~~~~~~~vi 55 (90)
|=-|.++-+..|.+.|..-.=++ .+|++-.-|.+||..+-+-+++.+- .||
T Consensus 189 GLtidp~~L~~IR~~Rl~~lg~~~s~Ya~~~~i~~El~~A~~l~~~~~~-pvI 240 (255)
T PF03618_consen 189 GLTIDPERLIEIRRERLKSLGLDDSSYADLERIEEELEYAERLFRKLGC-PVI 240 (255)
T ss_pred EEECCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHHHHcCC-CEE
Confidence 33466777888888887554344 5799999999999999887766665 444
No 47
>PRK11263 cardiolipin synthase 2; Provisional
Probab=21.20 E-value=1.6e+02 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.0
Q ss_pred cccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHH
Q 042506 6 SISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYI 42 (90)
Q Consensus 6 ~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i 42 (90)
.|...+..+|..++..|.+-++-|..+.=-+..|..+
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpYf~p~~~l~~aL~~A 242 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAYFFPGYRLLRALRNA 242 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecCcCCCHHHHHHHHHH
Confidence 3445678899999999999999997764444444443
No 48
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=21.11 E-value=1.8e+02 Score=20.29 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=32.9
Q ss_pred hcceEEEEecCCcccchhh---HHHHHHHHHhhc-cCCCCeEEEEEeecCcchhh-hccchHHH
Q 042506 17 DSRISIIVLSRNYTSSTWC---LDEVVYILECKH-TNDQPMVYLIFYDVEPTMLR-KQTRHFQE 75 (90)
Q Consensus 17 ~Sr~~IvV~S~ny~~S~wc---l~EL~~i~~~~~-~~~~~~vipIfy~v~ps~v~-~q~g~~~~ 75 (90)
+-+.+|+.|.=.+... =| +.+|...+.... ..+. .|-+||..|||.+=. .+...|+.
T Consensus 66 ~Gk~~lv~FgyT~Cpd-VCP~~l~~l~~~~~~l~~~~~~-~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPD-VCPTTLAELKALLKKLGEGEGD-DVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCc-cChHHHHHHHHHHHHhccccCC-CEEEEEEEECCCCCCHHHHHHHhc
Confidence 4456666665222222 35 445566666665 4444 888999999998643 33444544
No 49
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=20.79 E-value=1.9e+02 Score=23.14 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhhccCCCCeEEEEEeecCcchh---hhccchHHHHHHHHHHhH--hhhhc
Q 042506 33 TWCLDEVVYILECKHTNDQPMVYLIFYDVEPTML---RKQTRHFQEALAKHEEFF--RQIWK 89 (90)
Q Consensus 33 ~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v---~~q~g~~~~~f~~~~~~~--~~~w~ 89 (90)
.||+.||..-....++.+...++...-.|-.||- ......+.+|+..++... ...|.
T Consensus 58 ~~~~~EL~~ka~~~~~tg~v~v~d~~~~V~kSD~~v~~~l~~~L~~av~~Le~~p~~~kdwh 119 (501)
T PF14033_consen 58 DWCIAELRDKAKYFEETGLVPVLDSSSGVWKSDTLVPEELREELKDAVAPLEDVPEDQKDWH 119 (501)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEECCccceEEecCCCCHHHHHHHHHHHHHHHhhhccccccC
Confidence 4999999876665555555123332112222321 122345666777766654 34553
No 50
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=20.76 E-value=2.3e+02 Score=17.77 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecC
Q 042506 8 SPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVE 62 (90)
Q Consensus 8 ~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ 62 (90)
..++.++|+++...++|++-.-..+.+. .++...+.... .+. .++.|+=++|
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k-~~iivlNK~D 53 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRK-KNILLLNKAD 53 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCC-cEEEEEechh
Confidence 3567889999999999998765555442 14444443321 233 5666664444
No 51
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=20.74 E-value=2.1e+02 Score=17.20 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=28.1
Q ss_pred HHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhcc---CCCCeEEEEEeecCc
Q 042506 10 SLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHT---NDQPMVYLIFYDVEP 63 (90)
Q Consensus 10 ~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~---~~~~~vipIfy~v~p 63 (90)
.....++++...|+|++.+-.++ ..++...+..... .+. .++.|.-+.|.
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~ 117 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRES---FENLDKWLKELKEYAPENI-PIILVGNKIDL 117 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCC-cEEEEEEcccc
Confidence 34556778999999998865443 2333334433322 233 55656555443
No 52
>PHA02087 hypothetical protein
Probab=20.56 E-value=36 Score=20.47 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCcccchhhHHHHHHHHH
Q 042506 27 RNYTSSTWCLDEVVYILE 44 (90)
Q Consensus 27 ~ny~~S~wcl~EL~~i~~ 44 (90)
+.|++|.|-..|+.+.|-
T Consensus 15 k~fa~s~~yn~~f~k~mp 32 (83)
T PHA02087 15 KAFAESEWYNEEFEKFMP 32 (83)
T ss_pred HHHHhhhHHHHHHHhhCc
Confidence 359999999999988863
No 53
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=20.25 E-value=3.7e+02 Score=19.95 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.9
Q ss_pred CCCCCcccHHHHHHHH---hcce-EEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhcc
Q 042506 1 LERGESISPSLLKAIE---DSRI-SIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQT 70 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~---~Sr~-~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~ 70 (90)
++|+-+-...-++|++ ++.+ +-+.++|=.....| +|+..+++...+.+...++..++.+.....+...
T Consensus 161 ~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~~v~~~~l~~~~~~~~~~~ 232 (297)
T COG1533 161 LEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLND--EELERILEAAAEAGARVVVYGTLRLRLDILRRFK 232 (297)
T ss_pred cCCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCCh--HHHHHHHHHHHHcCCCeeEeeeeeccHHHHHHHH
Confidence 4566666666666555 4444 55678999888889 8888888765444443777777777665544333
No 54
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=20.20 E-value=1.3e+02 Score=17.75 Aligned_cols=23 Identities=17% Similarity=0.642 Sum_probs=13.9
Q ss_pred HHHHHHHhcceEEEEecCCcccchhhHH
Q 042506 10 SLLKAIEDSRISIIVLSRNYTSSTWCLD 37 (90)
Q Consensus 10 ~i~~aI~~Sr~~IvV~S~ny~~S~wcl~ 37 (90)
++.++++..+..+|.|+ +.||-.
T Consensus 3 ~~~~~~~~~k~vlv~f~-----a~wC~~ 25 (104)
T cd02953 3 ALAQALAQGKPVFVDFT-----ADWCVT 25 (104)
T ss_pred HHHHHHHcCCeEEEEEE-----cchhHH
Confidence 45567776666666664 456643
No 55
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=20.16 E-value=2e+02 Score=20.48 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=12.1
Q ss_pred hccCCCCeEEEEEeecCcc
Q 042506 46 KHTNDQPMVYLIFYDVEPT 64 (90)
Q Consensus 46 ~~~~~~~~vipIfy~v~ps 64 (90)
+.+.|- .||=+|++++..
T Consensus 130 L~~~G~-~IiKfflhIsk~ 147 (228)
T PF03976_consen 130 LADDGT-LIIKFFLHISKK 147 (228)
T ss_dssp HHHTTE-EEEEEEEE--HH
T ss_pred HHHCCC-eEEEEEEEeCHH
Confidence 456677 899999998854
Done!