Query 042506
Match_columns 90
No_of_seqs 141 out of 1038
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 4.2E-35 1.5E-39 201.1 5.1 88 1-89 46-137 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 7.9E-35 2.7E-39 203.7 6.1 88 1-89 73-165 (204)
3 3h16_A TIR protein; bacteria T 99.9 3E-25 1E-29 147.8 0.4 78 1-79 57-134 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.7 1.3E-19 4.4E-24 120.3 -0.3 67 1-68 48-114 (146)
5 2j67_A TOLL like receptor 10; 99.7 1.3E-17 4.5E-22 113.8 3.5 65 1-66 74-140 (178)
6 1fyx_A TOLL-like receptor 2; b 99.7 4.8E-18 1.6E-22 112.7 0.9 66 1-67 44-111 (149)
7 1t3g_A X-linked interleukin-1 99.7 6.8E-17 2.3E-21 108.4 4.9 62 1-63 51-114 (159)
8 2js7_A Myeloid differentiation 99.6 2.1E-17 7.1E-22 111.0 -0.4 61 1-62 54-116 (160)
9 3j0a_A TOLL-like receptor 5; m 99.4 6.4E-14 2.2E-18 111.3 4.6 62 1-63 712-774 (844)
10 3hyn_A Putative signal transdu 93.8 0.13 4.5E-06 35.2 5.4 51 6-60 68-118 (189)
11 1eiw_A Hypothetical protein MT 91.4 0.13 4.4E-06 32.2 2.6 41 13-58 34-74 (111)
12 1byr_A Protein (endonuclease); 80.6 4.9 0.00017 24.7 5.6 52 2-60 10-61 (155)
13 1pp9_G Ubiquinol-cytochrome C 54.7 15 0.00051 21.5 3.4 33 56-88 13-45 (81)
14 4hde_A SCO1/SENC family lipopr 53.0 7.6 0.00026 24.5 2.1 43 19-64 33-79 (170)
15 2pp6_A Gifsy-2 prophage ATP-bi 49.7 6.3 0.00022 24.3 1.2 23 9-31 42-64 (102)
16 1egw_A MADS box transcription 42.9 10 0.00034 22.0 1.3 32 15-46 37-68 (77)
17 4ggj_A Mitochondrial cardiolip 38.4 80 0.0027 20.5 6.2 45 2-51 42-86 (196)
18 2i4r_A V-type ATP synthase sub 37.2 34 0.0011 20.6 3.1 25 7-31 41-65 (102)
19 1q2j_A MU-conotoxin SMIIIA; HE 36.7 5.5 0.00019 18.5 -0.4 11 27-37 7-17 (26)
20 2d00_A V-type ATP synthase sub 36.1 59 0.002 19.5 4.2 25 7-31 34-58 (109)
21 3p57_A Myocyte-specific enhanc 33.6 19 0.00065 21.5 1.5 33 14-46 36-68 (90)
22 2oe3_A Thioredoxin-3; electron 27.4 47 0.0016 19.0 2.6 17 10-26 22-38 (114)
23 3hsi_A Phosphatidylserine synt 26.8 1.3E+02 0.0046 22.3 5.5 58 2-61 33-91 (458)
24 1v0w_A Phospholipase D; hydrol 26.6 1.1E+02 0.0038 22.7 5.0 57 4-60 64-120 (506)
25 3aon_B V-type sodium ATPase su 26.4 39 0.0013 20.7 2.1 24 7-31 33-56 (115)
26 1lup_A GSMTX2; inhibitor cyste 23.9 7.4 0.00025 18.9 -1.3 13 27-39 17-29 (31)
27 3mwd_B ATP-citrate synthase; A 23.8 65 0.0022 23.3 3.2 29 3-31 88-117 (334)
28 2yan_A Glutaredoxin-3; oxidore 21.3 38 0.0013 19.4 1.3 29 7-37 6-34 (105)
29 3hsi_A Phosphatidylserine synt 20.6 1.5E+02 0.0051 22.1 4.7 37 6-42 258-294 (458)
30 2wem_A Glutaredoxin-related pr 20.4 74 0.0025 19.1 2.5 30 4-35 6-35 (118)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-35 Score=201.15 Aligned_cols=88 Identities=41% Similarity=0.695 Sum_probs=71.5
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH 80 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~ 80 (90)
|++|+.|.++|.+||++||++|+|||+||++|.||++||++|++|.++.++ +||||||+|+|++|++|+|.||++|.+|
T Consensus 46 l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~-~ViPIfy~V~ps~Vr~q~g~fg~af~~~ 124 (176)
T 3jrn_A 46 LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSI-TVMPIFYGVEPNHVRWQTGVLAEQFKKH 124 (176)
T ss_dssp -------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSC-EEEEEECSSCHHHHHHTCTHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCC-EEEEEEecCCHHHhhhccCcHHHHHHHH
Confidence 579999999999999999999999999999999999999999999988888 9999999999999999999999999999
Q ss_pred HHhH----hhhhc
Q 042506 81 EEFF----RQIWK 89 (90)
Q Consensus 81 ~~~~----~~~w~ 89 (90)
+++. .++||
T Consensus 125 ~~~~~~~~~~~Wr 137 (176)
T 3jrn_A 125 ASREDPEKVLKWR 137 (176)
T ss_dssp HTTSCHHHHHHHH
T ss_pred HhccCHHHHHHHH
Confidence 8863 37897
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.9e-35 Score=203.66 Aligned_cols=88 Identities=38% Similarity=0.719 Sum_probs=82.8
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhcc-CCCCeEEEEEeecCcchhhhccchHHHHHHH
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHT-NDQPMVYLIFYDVEPTMLRKQTRHFQEALAK 79 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~-~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~ 79 (90)
|++|+.|.++|.+||++||++|+|||+||++|.||++||++|++|.++ .++ +||||||+|+|++||+|+|.||++|.+
T Consensus 73 l~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~-~ViPIFY~VdPs~Vr~q~g~fg~af~~ 151 (204)
T 3ozi_A 73 LLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRR-IILPIFYMVDPSDVRHQTGCYKKAFRK 151 (204)
T ss_dssp TCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTS-EECCEEESSCHHHHHHTCTTHHHHHHH
T ss_pred cCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCe-eeEEEEeecCHHHHHhccccHHHHHHH
Confidence 579999999999999999999999999999999999999999999875 577 999999999999999999999999999
Q ss_pred HHHhH----hhhhc
Q 042506 80 HEEFF----RQIWK 89 (90)
Q Consensus 80 ~~~~~----~~~w~ 89 (90)
|++++ .++||
T Consensus 152 ~~~~~~~~~v~~Wr 165 (204)
T 3ozi_A 152 HANKFDGQTIQNWK 165 (204)
T ss_dssp HTTTSCHHHHHHHH
T ss_pred HHHhhCHHHHHHHH
Confidence 99875 37897
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.90 E-value=3e-25 Score=147.77 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHH
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAK 79 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~ 79 (90)
|.+|+.+.++|.++|++|+++|+|+|+||++|.||++||..++++..+++. +||||||+|+|++|++|+|.|+++|..
T Consensus 57 l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~-~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 57 LRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRS-RILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp ECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCC-CEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred CCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCC-EEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 468999999999999999999999999999999999999999998877777 999999999999999999999987744
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.74 E-value=1.3e-19 Score=120.31 Aligned_cols=67 Identities=12% Similarity=0.288 Sum_probs=55.2
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhh
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRK 68 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~ 68 (90)
+.||+.+.++|.+||++||++|+|||+||++|.||+.||..++++...... +||||||+|+++++..
T Consensus 48 ~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~-~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 48 ATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG-CTIPLLSGLSRAAYPP 114 (146)
T ss_dssp -----CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSS-EEEEEECSCCGGGSCG
T ss_pred ccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCC-cEEEEEcCCChhhCCH
Confidence 469999999999999999999999999999999999999999998754445 7789999998666543
No 5
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.68 E-value=1.3e-17 Score=113.84 Aligned_cols=65 Identities=31% Similarity=0.520 Sum_probs=53.5
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEee-cCcchh
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYD-VEPTML 66 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~-v~ps~v 66 (90)
+.||+.|.++|.+||++||++|+|||+||++|.||+.||..++++. .++++ .||||||+ +++..+
T Consensus 74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~-~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSD-HIILILLEPIPFYCI 140 (178)
T ss_dssp CCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC--------CEEEEESSCCCGGGS
T ss_pred CCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCC-EEEEEEecCCChHHC
Confidence 4799999999999999999999999999999999999999999754 55566 89999995 555444
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.68 E-value=4.8e-18 Score=112.69 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=57.3
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHh-hccCCCCeEEEEEee-cCcchhh
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILEC-KHTNDQPMVYLIFYD-VEPTMLR 67 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~-~~~~~~~~vipIfy~-v~ps~v~ 67 (90)
+.||+.+.++|.++|++||++|+|||+||++|.||+.||..++++ ..+++. .||||||+ +++..+.
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~-~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENND-AAILILLEPIEKKAIP 111 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTT-CCEEEESSCCCTTTSC
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCC-EEEEEEecCCChhhcC
Confidence 469999999999999999999999999999999999999999864 455666 89999994 6665443
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.66 E-value=6.8e-17 Score=108.37 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcc-cchhhHHHHHHHHHhh-ccCCCCeEEEEEeecCc
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYT-SSTWCLDEVVYILECK-HTNDQPMVYLIFYDVEP 63 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~-~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~p 63 (90)
+.||+.|.++|.++|++||++|+|||+||+ .|.||+.|+..++++. .+++. .||||+|+-.+
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~-~vI~I~~~~~~ 114 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEI-KVILIECSELR 114 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSS-EEEEEECSCCC
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCC-EEEEEEecccc
Confidence 469999999999999999999999999997 9999999999999986 55666 99999987444
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.63 E-value=2.1e-17 Score=110.97 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCCCcccHHHHHHHH-hcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEeecC
Q 042506 1 LERGESISPSLLKAIE-DSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYDVE 62 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~-~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~ 62 (90)
+.||+.+.++|.++|+ .||++|+|||+||++|.||+.|+..++++. .+++. +||||||+.-
T Consensus 54 ~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~-~vIpV~~~~~ 116 (160)
T 2js7_A 54 VLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQK-RLIPIKYKAM 116 (160)
T ss_dssp SSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHH-TEEEEESSCC
T ss_pred CCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCC-EEEEEEEccc
Confidence 4699999999999999 799999999999999999999999999875 44455 8999999754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=6.4e-14 Score=111.28 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=55.5
Q ss_pred CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEeecCc
Q 042506 1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYDVEP 63 (90)
Q Consensus 1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~p 63 (90)
+.||+.|.++|.+||++||++|+|+|++|+.|+||.+|+..++++. +++++ +||||||+-.|
T Consensus 712 ~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~-~~i~i~~~~~~ 774 (844)
T 3j0a_A 712 FVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNS-ALIMVVVGSLS 774 (844)
T ss_dssp CCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCT-TEEEEESSCCC
T ss_pred cCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCC-cEEEEEeccCC
Confidence 4699999999999999999999999999999999999999999875 55666 99999996443
No 10
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=93.81 E-value=0.13 Score=35.16 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=42.3
Q ss_pred cccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 6 SISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 6 ~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
.|-..|-+.|..|...|+++|++...|.|-..|+..+.+ +.+. .||-|..+
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~-PII~Vy~~ 118 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGL-PVIVIYPD 118 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCC-CEEEEETT
T ss_pred HHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCC-cEEEEECC
Confidence 456788889999999999999999999999999988872 2345 78888754
No 11
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=91.44 E-value=0.13 Score=32.18 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=31.6
Q ss_pred HHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEE
Q 042506 13 KAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIF 58 (90)
Q Consensus 13 ~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIf 58 (90)
..|+.|...|+..+++-.+|+||..|+..+.+ .+. .|+-|.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~----~gk-pIigV~ 74 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARK----SSK-PIITVR 74 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTC-CEEEEC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHH----cCC-CEEEEE
Confidence 34678888899999988999999999987754 344 566664
No 12
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=80.56 E-value=4.9 Score=24.71 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
.||+.+.+.+.++|+.++..|.+.++.|. + .++..++....+.|- -+-|+++
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~~-~----~~i~~aL~~a~~rGV--~Vril~~ 61 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSFT-A----PDIMKALVAAKKRGV--DVKIVID 61 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSBC-C----HHHHHHHHHHHHTTC--EEEEEEE
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEeC-C----HHHHHHHHHHHHCCC--EEEEEEe
Confidence 37788888999999999999999998773 3 345444443333333 3344444
No 13
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=54.70 E-value=15 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=28.0
Q ss_pred EEEeecCcchhhhccchHHHHHHHHHHhHhhhh
Q 042506 56 LIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIW 88 (90)
Q Consensus 56 pIfy~v~ps~v~~q~g~~~~~f~~~~~~~~~~w 88 (90)
-|-|.++|-+-+...|.|.+++-..-.++++.|
T Consensus 13 ivtYslSP~~Qr~~~g~~~~~i~n~~RR~~~~~ 45 (81)
T 1pp9_G 13 VITYSLSPFEQRAFPHYFSKGIPNVLRRTRACI 45 (81)
T ss_dssp EEEEEECTTTBCSSTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeChhhcccccchHhhhhhHHHHHHHhcc
Confidence 456899999999999999999988888876555
No 14
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=52.95 E-value=7.6 Score=24.54 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=24.8
Q ss_pred ceEEEEecCCccc-chhhHH---HHHHHHHhhccCCCCeEEEEEeecCcc
Q 042506 19 RISIIVLSRNYTS-STWCLD---EVVYILECKHTNDQPMVYLIFYDVEPT 64 (90)
Q Consensus 19 r~~IvV~S~ny~~-S~wcl~---EL~~i~~~~~~~~~~~vipIfy~v~ps 64 (90)
+..++-|- |.. ..||-. +|..+.+...+.+. .|..|+..++|.
T Consensus 33 k~vll~F~--~t~Cp~~Cp~~~~~l~~l~~~~~~~~~-~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFM--FTNCQTVCPPMTANMAKLQKMAKEEKL-DVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEE--CTTCSSSHHHHHHHHHHHHHHHHHTTC-CCEEEEEESCTT
T ss_pred CEEEEEEE--CCCCCCcccHHHHHHHHHHHhhhcccc-cceeEeeecCcc
Confidence 45555553 222 247854 55555555555555 677788888875
No 15
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=49.70 E-value=6.3 Score=24.29 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=12.8
Q ss_pred HHHHHHHHhcceEEEEecCCccc
Q 042506 9 PSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 9 ~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
+..+.++..+.++++|||..|.-
T Consensus 42 ~~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 42 LAELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp TC--------CEEEEECCSSCCC
T ss_pred HHHhCCccCCceEEEEecCCccc
Confidence 35677899999999999999965
No 16
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=42.94 E-value=10 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHhcceEEEEecCCcccchhhHHHHHHHHHhh
Q 042506 15 IEDSRISIIVLSRNYTSSTWCLDEVVYILECK 46 (90)
Q Consensus 15 I~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~ 46 (90)
..++.++++|||++-.-..||-..+..++++.
T Consensus 37 LCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 37 LCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred ccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 46889999999998555455544566666553
No 17
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=38.45 E-value=80 Score=20.45 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCC
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQ 51 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~ 51 (90)
..|+...+.++++|+.++.+|-+-.=.|. + +++..++....+.|-
T Consensus 42 ~~~~~~~~~ll~~I~~A~~sI~i~~y~~~-~----~~i~~aL~~aa~rGV 86 (196)
T 4ggj_A 42 PHSESSLSRLLRALLAARSSLELCLFAFS-S----PQLGRAVQLLHQRGV 86 (196)
T ss_dssp CCSCCHHHHHHHHHHTCSSEEEEEESCBC-C----HHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHhheEEEEEEEEeC-C----HHHHHHHHHHHHcCC
Confidence 46777788999999999999988763332 2 355555544333333
No 18
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=37.18 E-value=34 Score=20.55 Aligned_cols=25 Identities=8% Similarity=0.424 Sum_probs=18.9
Q ss_pred ccHHHHHHHHhcceEEEEecCCccc
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
+...+.+.+++..++|+++++++++
T Consensus 41 ~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 41 IVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3445556666778999999999876
No 19
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=36.69 E-value=5.5 Score=18.49 Aligned_cols=11 Identities=55% Similarity=0.996 Sum_probs=8.8
Q ss_pred CCcccchhhHH
Q 042506 27 RNYTSSTWCLD 37 (90)
Q Consensus 27 ~ny~~S~wcl~ 37 (90)
||--+|.||.+
T Consensus 7 pngCs~rWCrd 17 (26)
T 1q2j_A 7 RRGCSSRWCRD 17 (26)
T ss_dssp SSCCCSSSSSS
T ss_pred CCcccchhhcc
Confidence 56778999976
No 20
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=36.11 E-value=59 Score=19.54 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=19.2
Q ss_pred ccHHHHHHHHhcceEEEEecCCccc
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
+...+.+.+++..++|++++++.+.
T Consensus 34 ~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 34 AQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3445555666778999999999887
No 21
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=33.58 E-value=19 Score=21.48 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHhcceEEEEecCCcccchhhHHHHHHHHHhh
Q 042506 14 AIEDSRISIIVLSRNYTSSTWCLDEVVYILECK 46 (90)
Q Consensus 14 aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~ 46 (90)
-..++.++++|||++=.-..||--.+..++++.
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 356889999999998444445544566666653
No 22
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=27.45 E-value=47 Score=18.99 Aligned_cols=17 Identities=12% Similarity=0.127 Sum_probs=11.9
Q ss_pred HHHHHHHhcceEEEEec
Q 042506 10 SLLKAIEDSRISIIVLS 26 (90)
Q Consensus 10 ~i~~aI~~Sr~~IvV~S 26 (90)
++..+++..+..++.|.
T Consensus 22 ~~~~~~~~~k~vvv~F~ 38 (114)
T 2oe3_A 22 EFRNLIKQNDKLVIDFY 38 (114)
T ss_dssp HHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEEE
Confidence 45566777777777775
No 23
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=26.79 E-value=1.3e+02 Score=22.33 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccC-CCCeEEEEEeec
Q 042506 2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTN-DQPMVYLIFYDV 61 (90)
Q Consensus 2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~-~~~~vipIfy~v 61 (90)
.-|+...+.++++|..++..|.+-+.-|..... -.++..++....+. .. +=+-|+++-
T Consensus 33 ~~g~~~~~~l~~~I~~A~~~I~i~~~~~~~d~~-g~~l~~aL~~aa~r~~G-V~Vril~D~ 91 (458)
T 3hsi_A 33 GSSAEFKTQIIELIRNAKKRIYVTALYWQKDEA-GQEILDEIYRVKQENPH-LDVKVLIDW 91 (458)
T ss_dssp CCHHHHHHHHHHHHHTCSSEEEEEESCBCSSHH-HHHHHHHHHHHHHHSTT-CEEEEEEET
T ss_pred eCHHHHHHHHHHHHHhcCCEEEEEEEEEecCcH-HHHHHHHHHHHHhcCCC-CEEEEEEEC
Confidence 456677789999999999999999998877642 34566665543222 23 455566653
No 24
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=26.62 E-value=1.1e+02 Score=22.71 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506 4 GESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~ 60 (90)
|+.+.+.++++|+.++.+|.+-+-.+..+.-...++..++....+.+.++-+-|+++
T Consensus 64 g~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~~g~~i~~aL~~aa~rGp~V~Vril~D 120 (506)
T 1v0w_A 64 TKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVG 120 (506)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccEEEEEEeeccCCChHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 466778899999999999999775531333334567777665444442255666665
No 25
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=26.41 E-value=39 Score=20.69 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=17.6
Q ss_pred ccHHHHHHHHhcceEEEEecCCccc
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTS 31 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~ 31 (90)
+...+.+.+++ .++|++++++.+.
T Consensus 33 ~~~~~~~l~~~-digIIlIte~ia~ 56 (115)
T 3aon_B 33 IRKTIDEMAKN-EYGVIYITEQCAN 56 (115)
T ss_dssp HHHHHHHHHHT-TEEEEEEEHHHHT
T ss_pred HHHHHHHHHhc-CceEEEEeHHHHH
Confidence 33445555666 9999999998776
No 26
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=23.86 E-value=7.4 Score=18.93 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.7
Q ss_pred CCcccchhhHHHH
Q 042506 27 RNYTSSTWCLDEV 39 (90)
Q Consensus 27 ~ny~~S~wcl~EL 39 (90)
++|+-+.||.++|
T Consensus 17 eg~vC~lWCKy~~ 29 (31)
T 1lup_A 17 EGLVCRLWCKRII 29 (31)
T ss_dssp SSSBCSSBCBCCC
T ss_pred ccchHHHHHHHHh
Confidence 6888999998765
No 27
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=23.79 E-value=65 Score=23.27 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHHhcce-EEEEecCCccc
Q 042506 3 RGESISPSLLKAIEDSRI-SIIVLSRNYTS 31 (90)
Q Consensus 3 ~G~~i~~~i~~aI~~Sr~-~IvV~S~ny~~ 31 (90)
|.....+.+.+++....+ .++++|..|.+
T Consensus 88 p~~~a~~ai~ea~~~~Gv~~vViiT~G~~e 117 (334)
T 3mwd_B 88 SLRSAYDSTMETMNYAQIRTIAIIAEGIPE 117 (334)
T ss_dssp CTTTHHHHHHHHTTSTTCCEEEECCSCCCH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Confidence 444555677888886655 78888999987
No 28
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.33 E-value=38 Score=19.35 Aligned_cols=29 Identities=7% Similarity=0.150 Sum_probs=15.4
Q ss_pred ccHHHHHHHHhcceEEEEecCCcccchhhHH
Q 042506 7 ISPSLLKAIEDSRISIIVLSRNYTSSTWCLD 37 (90)
Q Consensus 7 i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~ 37 (90)
+...+.+.|...+ |+||+..-....||-.
T Consensus 6 ~~~~~~~~i~~~~--vvvf~~g~~~~~~C~~ 34 (105)
T 2yan_A 6 LEERLKVLTNKAS--VMLFMKGNKQEAKCGF 34 (105)
T ss_dssp HHHHHHHHHTSSS--EEEEESBCSSSBCTTH
T ss_pred HHHHHHHHhccCC--EEEEEecCCCCCCCcc
Confidence 3445555665544 6667764433456643
No 29
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=20.56 E-value=1.5e+02 Score=22.09 Aligned_cols=37 Identities=0% Similarity=0.078 Sum_probs=28.1
Q ss_pred cccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHH
Q 042506 6 SISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYI 42 (90)
Q Consensus 6 ~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i 42 (90)
.+...+.++|..++..|.+-||-|..+.--+..|..+
T Consensus 258 ~i~~~~~~lI~~A~~~I~I~tpYf~p~~~~~~aL~~A 294 (458)
T 3hsi_A 258 ELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATL 294 (458)
T ss_dssp HHHHHHHHHHHTCSSEEEEECSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccEEEEEEeccCCCHHHHHHHHHH
Confidence 4556788999999999999999998776444444443
No 30
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=20.36 E-value=74 Score=19.08 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=15.9
Q ss_pred CCcccHHHHHHHHhcceEEEEecCCcccchhh
Q 042506 4 GESISPSLLKAIEDSRISIIVLSRNYTSSTWC 35 (90)
Q Consensus 4 G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wc 35 (90)
|......+.+.|...+ |+|||+....-.||
T Consensus 6 ~~~~~~~v~~~i~~~~--Vvvfsk~t~~~p~C 35 (118)
T 2wem_A 6 GGGSAEQLDALVKKDK--VVVFLKGTPEQPQC 35 (118)
T ss_dssp ---CHHHHHHHHHHSS--EEEEESBCSSSBSS
T ss_pred CccHHHHHHHHhccCC--EEEEEecCCCCCcc
Confidence 3444556777788776 55566653333344
Done!