BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042509
(892 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNL 258
+++ GM G GK+ LA A VR+H + C S S+ K GL + NL
Sbjct: 150 VTIYGMAGCGKSVLAAEA-----VRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 259 --------GSLQSYLLRIYEAIAK---------KKFLLVLDDVWNDDRTKWEPLNHCLMN 301
Q L I EA + + LL+LDDVW +P +
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-------DPWVLKAFD 255
Query: 302 GQCGSKILVTTRKETVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEI 360
QC +IL+TTR ++V+ +M +V+ +E E + + L+ F E +L
Sbjct: 256 NQC--QILLTTRDKSVTDSVMGPKHVVPVESGLGRE--KGLEILSLFVNMKKE--DLPAE 309
Query: 361 GRKIVHKCKGLPLAAKTIGSLL 382
I+ +CKG PL IG+LL
Sbjct: 310 AHSIIKECKGSPLVVSLIGALL 331
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 38/223 (17%)
Query: 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP 237
+ KL+ + + S+ + +++ GM G GK+ LA A VR+H + C
Sbjct: 135 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA-----VRDHSLLEG--CFPGG 187
Query: 238 FDEFSVAKSIIEGLEGETSNLGSL--------QSYLLRIYEAIAKKKFL---------LV 280
SV K GL + NL + Q L I EA + + L L+
Sbjct: 188 VHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 247
Query: 281 LDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVS-RMMESTNVMFIEELSESECWR 339
LDDVW+ K + QC +IL+TTR ++V+ +M V+ +E E +
Sbjct: 248 LDDVWDSWVLK-------AFDSQC--QILLTTRDKSVTDSVMGPKYVVPVESSLGKE--K 296
Query: 340 LFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382
+ L+ F +L E I+ +CKG PL IG+LL
Sbjct: 297 GLEILSLFVNMKKA--DLPEQAHSIIKECKGSPLVVSLIGALL 337
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 38/223 (17%)
Query: 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP 237
+ KL+ + + S+ + +++ GM G GK+ LA A VR+H + C
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA-----VRDHSLLEG--CFPGG 181
Query: 238 FDEFSVAKSIIEGLEGETSNLGSL--------QSYLLRIYEAIAKKKFL---------LV 280
SV K GL + NL + Q L I EA + + L L+
Sbjct: 182 VHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 241
Query: 281 LDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVS-RMMESTNVMFIEELSESECWR 339
LDDVW+ K + QC +IL+TTR ++V+ +M V+ +E E +
Sbjct: 242 LDDVWDSWVLK-------AFDSQC--QILLTTRDKSVTDSVMGPKYVVPVESSLGKE--K 290
Query: 340 LFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382
+ L+ F +L E I+ +CKG PL IG+LL
Sbjct: 291 GLEILSLFVNMKKA--DLPEQAHSIIKECKGSPLVVSLIGALL 331
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 512 RFSIGVDD--------PEESTSMEKLRHFMLVLGKSVAFPVS--IFKARKLRSLLIVG-P 560
++SI DD P++S ++L H L L F +S IFK L L + G
Sbjct: 200 QYSIDEDDDIENRMVMPKDSKYDDQLWH-ALDLSNLQIFNISANIFKYDFLTRLYLNGNS 258
Query: 561 ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVN 620
+ E+P EI+N LR L LS + LP F L+ D + LP E G L N
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCN 317
Query: 621 LRYL 624
L++L
Sbjct: 318 LQFL 321
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNL 258
+++ GM G GK+ LA A VR+H + C S S+ K GL + NL
Sbjct: 157 VTIYGMAGCGKSVLAAEA-----VRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 259 --------GSLQSYLLRIYEAIAK---------KKFLLVLDDVWNDDRTKWEPLNHCLMN 301
Q L I EA + + LL+LDDVW +P +
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-------DPWVLKAFD 262
Query: 302 GQCGSKILVTTRKETVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEI 360
QC +IL+TT ++V+ +M +V+ +E E + + L+ F E +L
Sbjct: 263 NQC--QILLTTSDKSVTDSVMGPKHVVPVESGLGRE--KGLEILSLFVNMKKE--DLPAE 316
Query: 361 GRKIVHKCKGLPLAAKTIGSLL 382
I+ +CKG PL IG+LL
Sbjct: 317 AHSIIKECKGSPLVVSLIGALL 338
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 505 QFLSKNERFSIGVDDPEESTSMEKLRH--FMLVLGKSV-AFPVSIF-KARKLRSLLIV-G 559
Q+L ++G + + +++++L + ++++ G + + P +F K L+ L++V
Sbjct: 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 560 PICEIPKEI-ENFMYLRFLKLSKAEIVELPETCCE-LFNLQTLEMEDCCNLKRLPQEI-G 616
+ +P + + L +L L ++ LP+ + L NL L++ D L+ LP+ +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFD 178
Query: 617 KLVNLRYLIYNDSYLHYLPRGI-ERLTCL 644
KL L+ L ND+ L +P G+ +RLT L
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 511 ERFSIGVDDPEESTSMEKLR---------HFMLV--LGKSVAFPVSIFKARKLRSLLIVG 559
+RF +G DD S+++++ H +L L + FP++ FK R L+ +L +
Sbjct: 91 QRFPLGGDDEVXSSTLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILTLK 150
Query: 560 PICEIPKEIENFMYLRFLKLSK 581
+ +I + R+ +LSK
Sbjct: 151 EVFQIASNDHDAAINRYSRLSK 172
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 511 ERFSIGVDDPEESTSMEKLR---------HFMLV--LGKSVAFPVSIFKARKLRSLLIVG 559
+RF +G DD S+++++ H +L L + FP++ FK R L+ +L +
Sbjct: 73 QRFPLGGDDEVXSSTLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILTLK 132
Query: 560 PICEIPKEIENFMYLRFLKLSK 581
+ +I + R+ +LSK
Sbjct: 133 EVFQIASNDHDAAINRYSRLSK 154
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 9/75 (12%)
Query: 23 EQVRLVVGVEQDVEKLKRNFRAIQAVLV---DAEQKQVKEETVRLWLDQLKDASYDMEDV 79
E+ +L GV++++E L + + A L+ + ++Q+ + +LW D++++ SY +EDV
Sbjct: 16 EEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQD-KLWADEVRELSYVIEDV 74
Query: 80 LDEWITARLKLQIEG 94
+D+++ +Q++G
Sbjct: 75 VDKFL-----VQVDG 84
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 365 VHKCKGLPLAAKTIGSLLCFKRTE--EEWQSILDSELW-KVEEFENDLFGPLLMSFNDLP 421
VHK KG+P A +G FK E E W+ +LD+ ++ V +DL L +S+ +LP
Sbjct: 21 VHKWKGIPYAKPPVGQWR-FKAPEPPEVWEDVLDATVYGPVCPQPSDL---LSLSYKELP 76
Query: 422 SRIKRCFTFCAVFPKD 437
+ + C + VF D
Sbjct: 77 RQSEDCL-YVNVFAPD 91
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 511 ERFSIGVDDPEESTSMEKLR---------HFMLV--LGKSVAFPVSIFKARKLRSLLIVG 559
+RF +G DD S+++++ H +L L ++ FP++ FK R L+ +L +
Sbjct: 71 QRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLK 130
Query: 560 PICEIPKEIENFMYLRFLKLSK 581
+ +I + R+ +LSK
Sbjct: 131 EVFQIASNDHDAAINRYSRLSK 152
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 365 VHKCKGLPLAAKTIGSLLCFKRTE--EEWQSILDSELW-KVEEFENDLFGPLLMSFNDLP 421
VHK KG+P A +G FK E E W+ +LD+ + V +DL L +S+ +LP
Sbjct: 21 VHKWKGIPYAKPPVGQWR-FKAPEPPEVWEDVLDATAYGPVCPQPSDL---LSLSYTELP 76
Query: 422 SRIKRCFTFCAVFPKD 437
+ + C + VF D
Sbjct: 77 RQSEDCL-YVNVFAPD 91
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 365 VHKCKGLPLAAKTIGSLLCFKRTE--EEWQSILDSELW-KVEEFENDLFGPLLMSFNDLP 421
VHK KG+P A +G FK E E W+ +LD+ + + +DL L +S+ +LP
Sbjct: 21 VHKWKGIPYAKPPVGQWR-FKAPEPPEVWEDVLDATAYGPICPQPSDL---LSLSYTELP 76
Query: 422 SRIKRCFTFCAVFPKD 437
+ + C + VF D
Sbjct: 77 RQSEDCL-YVNVFAPD 91
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 569 ENFMYLRFLKLSKAEIVELPETCCE-LFNLQTLEMEDCCN-LKRLPQEIGKLVNLRYLIY 626
++ L L L ++ LP + L +L+ L M CCN L LP+ I +L +L +L
Sbjct: 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM--CCNKLTELPRGIERLTHLTHLAL 142
Query: 627 NDSYLHYLPRG-IERLTCL 644
+ + L +P G +RL+ L
Sbjct: 143 DQNQLKSIPHGAFDRLSSL 161
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 520 PEESTSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVG--PICEIPK---------EI 568
P+ L L A P SI +LR L I + E+P+ E
Sbjct: 120 PDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 569 ENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED-----------------------C 605
+ + L+ L+L I LP + L NL++L++ + C
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 606 CNLKRLPQEIGKLVNLRYLIYND-SYLHYLPRGIERLTCLRTL 647
L+ P G L+ LI D S L LP I RLT L L
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 549 ARKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNL 608
A +LRS+ P+ + P + +L+ + A + ELP+T + L+TL + L
Sbjct: 85 ALELRSV----PLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPL 139
Query: 609 KRLPQEIGKLVNLRYL 624
+ LP I L LR L
Sbjct: 140 RALPASIASLNRLREL 155
>pdb|2Z0N|A Chain A, Crystal Structure Of Appl1-Bar Domain
Length = 280
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 509 KNERFSIGVDDPEESTSMEKLR---------HFMLV--LGKSVAFPVSIFKARKLRSLLI 557
+ +RF +G DD S+++++ H +L L + FP++ FK R L+ +L
Sbjct: 74 EKQRFPLGGDDEVXSSTLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 133
Query: 558 VGPICEIPKEIENFMYLRFLKLSK 581
+ + +I + R+ +LSK
Sbjct: 134 LKEVFQIASNDHDAAINRYSRLSK 157
>pdb|2Q12|A Chain A, Crystal Structure Of Bar Domain Of Appl1
Length = 265
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 509 KNERFSIGVDDPEESTSMEKLR---------HFMLV--LGKSVAFPVSIFKARKLRSLLI 557
+ +RF +G DD S+++++ H +L L + FP++ FK R L+ +L
Sbjct: 69 EKQRFPLGGDDEVXSSTLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 128
Query: 558 VGPICEIPKEIENFMYLRFLKLSK 581
+ + +I + R+ +LSK
Sbjct: 129 LKEVFQIASNDHDAAINRYSRLSK 152
>pdb|3EIR|A Chain A, Crystal Structure Of Chbp, A Cif Homologue From
Burkholderia Pseudomallei
pdb|3EIR|B Chain B, Crystal Structure Of Chbp, A Cif Homologue From
Burkholderia Pseudomallei
Length = 281
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 284 VWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMMESTNVMFIEELSESECWRLFQQ 343
+ N +RT P+ +++ G K VT RK T++ +M+S E S W
Sbjct: 9 ISNTNRTGENPMITPIISSNLGLKHRVTLRKATLASLMQS----LSGESSNRVMWNDRYD 64
Query: 344 LAFFGRSPSECEN 356
R P E +N
Sbjct: 65 TLLIARDPREIKN 77
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 571 FMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKR-LPQEIGKLVNLRYL 624
+M L ++ S ++E C NLQ LEM CC +R + + KL +LRYL
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCP---NLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,785,665
Number of Sequences: 62578
Number of extensions: 990632
Number of successful extensions: 2844
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2826
Number of HSP's gapped (non-prelim): 44
length of query: 892
length of database: 14,973,337
effective HSP length: 107
effective length of query: 785
effective length of database: 8,277,491
effective search space: 6497830435
effective search space used: 6497830435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)