Query 042509
Match_columns 892
No_of_seqs 603 out of 4039
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-88 4.7E-93 787.5 43.5 621 11-653 6-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-61 5.7E-66 594.9 46.9 684 125-891 134-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-44 6E-49 381.4 14.5 279 174-459 1-286 (287)
4 KOG0444 Cytoskeletal regulator 99.9 4.2E-28 9.1E-33 254.2 -8.4 320 521-891 49-375 (1255)
5 PLN00113 leucine-rich repeat r 99.9 9.3E-24 2E-28 262.5 12.1 350 526-889 163-558 (968)
6 PLN00113 leucine-rich repeat r 99.9 2.6E-23 5.6E-28 258.5 14.7 129 526-654 139-272 (968)
7 KOG4194 Membrane glycoprotein 99.9 4.1E-23 8.9E-28 215.9 2.3 128 526-654 101-233 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.1E-23 2.5E-28 221.1 -6.8 320 520-888 25-349 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3.1E-28 210.1 -6.1 218 526-776 90-308 (565)
10 KOG4194 Membrane glycoprotein 99.8 6.3E-22 1.4E-26 207.1 3.2 313 526-885 124-446 (873)
11 PLN03210 Resistant to P. syrin 99.8 7.5E-20 1.6E-24 227.2 17.8 301 526-872 588-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 7.2E-22 1.6E-26 197.9 -6.3 182 520-716 107-289 (565)
13 KOG0618 Serine/threonine phosp 99.7 2.3E-19 5E-24 198.5 -4.2 253 527-805 45-327 (1081)
14 KOG0618 Serine/threonine phosp 99.7 2.2E-18 4.8E-23 190.8 -5.5 114 733-868 375-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 6.3E-16 1.4E-20 177.7 12.1 252 530-866 204-456 (788)
16 KOG0617 Ras suppressor protein 99.6 2.5E-17 5.5E-22 146.3 -5.0 166 569-787 30-195 (264)
17 PRK15370 E3 ubiquitin-protein 99.6 2.6E-15 5.5E-20 174.1 8.0 225 528-804 179-404 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 6.9E-15 1.5E-19 170.5 5.8 226 526-801 198-428 (754)
19 PRK15387 E3 ubiquitin-protein 99.5 2.8E-14 6.1E-19 164.2 9.8 234 526-833 221-455 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.5 1.6E-14 3.4E-19 170.2 5.7 316 526-874 544-866 (889)
21 KOG0617 Ras suppressor protein 99.4 1.6E-15 3.5E-20 134.9 -5.2 129 525-653 31-161 (264)
22 KOG4237 Extracellular matrix p 99.4 1.9E-14 4E-19 145.2 -0.6 261 526-808 66-342 (498)
23 PRK04841 transcriptional regul 99.4 2.2E-11 4.7E-16 151.3 24.9 292 169-508 14-332 (903)
24 PRK00411 cdc6 cell division co 99.4 1.6E-10 3.4E-15 128.5 27.8 318 164-497 25-374 (394)
25 KOG4237 Extracellular matrix p 99.3 1.9E-13 4.1E-18 138.0 -3.5 295 536-866 55-357 (498)
26 TIGR03015 pepcterm_ATPase puta 99.2 5.9E-10 1.3E-14 116.9 20.7 182 196-382 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.2 3.8E-09 8.2E-14 116.2 27.7 304 166-484 12-351 (365)
28 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-12 2.8E-17 141.2 -3.1 92 700-802 191-292 (319)
29 PF01637 Arch_ATPase: Archaeal 99.2 6.2E-11 1.3E-15 121.8 9.3 194 171-377 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.1 3.8E-10 8.3E-15 121.1 12.9 276 169-483 25-310 (328)
31 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.5E-17 135.9 -3.8 193 526-775 74-270 (722)
32 TIGR00635 ruvB Holliday juncti 99.1 1.6E-09 3.5E-14 115.7 16.2 274 169-482 4-288 (305)
33 cd00116 LRR_RI Leucine-rich re 99.1 7.9E-12 1.7E-16 135.1 -1.6 259 526-799 22-318 (319)
34 COG2909 MalT ATP-dependent tra 99.1 7.3E-09 1.6E-13 116.2 19.5 291 178-509 24-339 (894)
35 PF05729 NACHT: NACHT domain 99.0 2.3E-09 5E-14 103.4 11.3 143 197-345 1-163 (166)
36 PRK06893 DNA replication initi 98.9 2.5E-08 5.4E-13 100.8 15.5 155 196-381 39-206 (229)
37 KOG0532 Leucine-rich repeat (L 98.9 2.9E-11 6.3E-16 128.0 -6.6 212 531-799 54-271 (722)
38 KOG3207 Beta-tubulin folding c 98.9 4.5E-10 9.8E-15 115.6 1.2 215 566-865 115-336 (505)
39 COG3899 Predicted ATPase [Gene 98.8 9.9E-08 2.2E-12 113.8 18.4 312 171-506 2-384 (849)
40 PTZ00112 origin recognition co 98.8 9.9E-08 2.1E-12 108.0 17.0 214 167-382 753-986 (1164)
41 COG4886 Leucine-rich repeat (L 98.8 3.4E-09 7.3E-14 118.0 4.1 121 532-653 98-220 (394)
42 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 106.8 -0.7 138 568-760 280-417 (490)
43 COG2256 MGS1 ATPase related to 98.7 2.6E-07 5.6E-12 95.4 15.5 172 168-375 29-209 (436)
44 PRK13342 recombination factor 98.7 2E-07 4.3E-12 103.3 15.8 178 169-380 12-198 (413)
45 COG4886 Leucine-rich repeat (L 98.7 8.7E-09 1.9E-13 114.7 4.5 102 554-656 97-200 (394)
46 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.1E-07 4.6E-12 94.7 13.9 171 174-381 22-204 (226)
47 PRK07003 DNA polymerase III su 98.7 8.8E-07 1.9E-11 100.2 19.4 194 169-378 16-221 (830)
48 PRK14961 DNA polymerase III su 98.7 5.6E-07 1.2E-11 97.8 17.3 192 169-377 16-219 (363)
49 PRK05564 DNA polymerase III su 98.7 5.2E-07 1.1E-11 96.3 16.4 179 169-377 4-189 (313)
50 KOG3207 Beta-tubulin folding c 98.7 5.5E-09 1.2E-13 107.8 1.0 211 526-755 120-340 (505)
51 PF13401 AAA_22: AAA domain; P 98.7 3.7E-08 8E-13 90.6 6.4 116 195-314 3-125 (131)
52 KOG1909 Ran GTPase-activating 98.7 3.3E-09 7.1E-14 106.5 -0.6 82 525-606 28-131 (382)
53 PRK14949 DNA polymerase III su 98.7 4.4E-07 9.5E-12 104.7 16.2 194 169-378 16-220 (944)
54 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.3E-13 95.1 4.5 124 526-652 18-150 (175)
55 PF05496 RuvB_N: Holliday junc 98.6 2.8E-07 6E-12 88.9 11.4 181 169-382 24-225 (233)
56 PRK14960 DNA polymerase III su 98.6 5.9E-07 1.3E-11 100.5 15.4 194 169-378 15-219 (702)
57 PF14580 LRR_9: Leucine-rich r 98.6 2.1E-08 4.6E-13 94.8 2.8 117 536-655 6-126 (175)
58 COG1474 CDC6 Cdc6-related prot 98.6 3.7E-06 8E-11 90.2 20.0 175 168-347 16-205 (366)
59 PRK04195 replication factor C 98.6 5.8E-06 1.3E-10 93.6 22.6 247 169-458 14-272 (482)
60 PRK14963 DNA polymerase III su 98.6 1.7E-07 3.7E-12 104.8 9.8 194 170-375 15-214 (504)
61 TIGR02903 spore_lon_C ATP-depe 98.6 1.6E-05 3.5E-10 91.9 26.0 202 170-381 155-398 (615)
62 PRK14957 DNA polymerase III su 98.6 1.3E-06 2.8E-11 98.0 16.3 184 169-379 16-222 (546)
63 KOG1909 Ran GTPase-activating 98.6 3.8E-09 8.3E-14 106.1 -3.4 256 568-868 26-310 (382)
64 PF13191 AAA_16: AAA ATPase do 98.5 1.1E-07 2.4E-12 93.4 6.6 78 170-252 1-83 (185)
65 PRK12402 replication factor C 98.5 1.1E-06 2.3E-11 95.7 14.8 195 169-377 15-225 (337)
66 PRK08727 hypothetical protein; 98.5 1.8E-06 3.9E-11 87.5 15.1 148 197-375 42-201 (233)
67 PRK12323 DNA polymerase III su 98.5 1.3E-06 2.9E-11 97.4 14.9 199 169-378 16-225 (700)
68 PTZ00202 tuzin; Provisional 98.5 3.2E-06 7E-11 89.0 16.6 164 165-344 258-433 (550)
69 PRK07994 DNA polymerase III su 98.5 1.9E-06 4.2E-11 98.1 15.5 195 169-379 16-221 (647)
70 PF13173 AAA_14: AAA domain 98.5 3.8E-07 8.2E-12 83.1 8.0 120 196-337 2-127 (128)
71 PRK06645 DNA polymerase III su 98.5 3.5E-06 7.6E-11 93.9 17.2 195 169-376 21-227 (507)
72 PRK14956 DNA polymerase III su 98.5 1.9E-06 4.1E-11 93.9 14.2 193 169-377 18-221 (484)
73 cd00009 AAA The AAA+ (ATPases 98.5 8.1E-07 1.7E-11 83.7 10.0 125 172-316 1-131 (151)
74 KOG1259 Nischarin, modulator o 98.5 2.6E-08 5.7E-13 97.5 -0.5 130 525-656 282-413 (490)
75 PRK08084 DNA replication initi 98.5 4.4E-06 9.5E-11 84.8 15.6 153 197-380 46-211 (235)
76 PRK14964 DNA polymerase III su 98.5 4.1E-06 8.9E-11 92.5 16.4 183 169-377 13-216 (491)
77 PRK08691 DNA polymerase III su 98.4 2.2E-06 4.8E-11 97.0 14.2 194 169-378 16-220 (709)
78 PRK05896 DNA polymerase III su 98.4 3.7E-06 8E-11 94.3 15.4 196 169-380 16-223 (605)
79 PRK14951 DNA polymerase III su 98.4 4.1E-06 8.9E-11 95.3 15.9 197 169-378 16-225 (618)
80 PRK09112 DNA polymerase III su 98.4 5E-06 1.1E-10 88.9 15.7 195 168-379 22-241 (351)
81 PLN03025 replication factor C 98.4 3.5E-06 7.5E-11 90.1 14.6 183 169-376 13-198 (319)
82 TIGR02397 dnaX_nterm DNA polym 98.4 7E-06 1.5E-10 90.0 17.3 184 169-379 14-219 (355)
83 PRK00440 rfc replication facto 98.4 4.4E-06 9.5E-11 90.1 15.5 181 169-376 17-201 (319)
84 cd01128 rho_factor Transcripti 98.4 4.4E-07 9.5E-12 91.7 6.7 89 196-285 16-113 (249)
85 KOG2028 ATPase related to the 98.4 5E-06 1.1E-10 84.1 13.9 157 195-373 161-331 (554)
86 PRK14958 DNA polymerase III su 98.4 5E-06 1.1E-10 93.5 15.2 193 169-377 16-219 (509)
87 PRK14962 DNA polymerase III su 98.4 6.1E-06 1.3E-10 91.7 15.6 195 169-382 14-223 (472)
88 TIGR00678 holB DNA polymerase 98.4 6.4E-06 1.4E-10 80.8 14.1 91 274-374 95-187 (188)
89 PRK07940 DNA polymerase III su 98.4 6.8E-06 1.5E-10 89.1 15.2 191 170-378 6-213 (394)
90 PRK05642 DNA replication initi 98.4 7.7E-06 1.7E-10 82.9 14.5 156 196-382 45-212 (234)
91 PRK08903 DnaA regulatory inact 98.4 6.8E-06 1.5E-10 83.5 14.2 152 196-382 42-203 (227)
92 PRK07471 DNA polymerase III su 98.4 1.1E-05 2.4E-10 86.7 16.4 197 169-379 19-239 (365)
93 PRK14969 DNA polymerase III su 98.3 7.1E-06 1.5E-10 93.0 14.8 191 169-375 16-217 (527)
94 PRK13341 recombination factor 98.3 5.9E-06 1.3E-10 96.3 14.3 172 169-373 28-212 (725)
95 PRK14955 DNA polymerase III su 98.3 7.4E-06 1.6E-10 90.1 14.3 199 169-377 16-227 (397)
96 PF00308 Bac_DnaA: Bacterial d 98.3 6.4E-06 1.4E-10 82.4 12.1 184 170-378 10-208 (219)
97 PRK09087 hypothetical protein; 98.3 6.6E-06 1.4E-10 82.5 12.0 141 196-377 44-194 (226)
98 PRK14952 DNA polymerase III su 98.3 2.1E-05 4.5E-10 89.3 17.2 198 169-382 13-224 (584)
99 PRK09111 DNA polymerase III su 98.3 1.5E-05 3.1E-10 91.1 15.9 197 169-378 24-233 (598)
100 PRK07764 DNA polymerase III su 98.2 2E-05 4.4E-10 93.1 16.6 191 170-376 16-219 (824)
101 PRK09376 rho transcription ter 98.2 2.5E-06 5.4E-11 89.6 7.9 89 196-285 169-266 (416)
102 PRK14970 DNA polymerase III su 98.2 2.8E-05 6E-10 85.3 16.6 181 169-375 17-206 (367)
103 PRK14959 DNA polymerase III su 98.2 2.5E-05 5.4E-10 88.2 15.6 197 169-382 16-225 (624)
104 PRK14950 DNA polymerase III su 98.2 1.6E-05 3.4E-10 91.9 14.4 194 169-378 16-221 (585)
105 PRK07133 DNA polymerase III su 98.2 4E-05 8.7E-10 88.0 17.0 191 169-377 18-218 (725)
106 PRK14953 DNA polymerase III su 98.2 5.3E-05 1.2E-09 84.8 17.7 184 169-379 16-221 (486)
107 KOG2227 Pre-initiation complex 98.2 5E-05 1.1E-09 80.2 16.0 180 167-348 148-341 (529)
108 PRK14087 dnaA chromosomal repl 98.2 3E-05 6.6E-10 86.2 15.3 167 196-380 141-321 (450)
109 PRK14954 DNA polymerase III su 98.2 5.8E-05 1.3E-09 86.4 17.4 200 169-377 16-228 (620)
110 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.2E-12 103.9 -2.6 240 526-802 71-319 (414)
111 PRK08451 DNA polymerase III su 98.1 7.2E-05 1.6E-09 83.6 17.2 194 169-378 14-218 (535)
112 PF05621 TniB: Bacterial TniB 98.1 7.1E-05 1.5E-09 76.1 15.4 205 168-376 33-259 (302)
113 TIGR01242 26Sp45 26S proteasom 98.1 2.5E-05 5.4E-10 85.3 13.3 180 167-372 120-328 (364)
114 COG2255 RuvB Holliday junction 98.1 3.1E-05 6.7E-10 76.4 11.9 179 169-380 26-225 (332)
115 PRK14948 DNA polymerase III su 98.1 7.9E-05 1.7E-09 85.9 17.1 196 169-378 16-222 (620)
116 PRK14971 DNA polymerase III su 98.1 7.2E-05 1.6E-09 86.2 16.6 177 169-376 17-220 (614)
117 KOG0531 Protein phosphatase 1, 98.1 3.5E-07 7.6E-12 101.9 -2.2 104 549-655 71-175 (414)
118 PRK06305 DNA polymerase III su 98.1 6.3E-05 1.4E-09 83.7 15.5 182 169-378 17-223 (451)
119 PLN03150 hypothetical protein; 98.1 4.1E-06 8.9E-11 97.7 6.5 101 552-652 420-525 (623)
120 PF13855 LRR_8: Leucine rich r 98.1 2.5E-06 5.5E-11 66.0 2.9 56 573-629 2-59 (61)
121 KOG2543 Origin recognition com 98.1 0.00011 2.4E-09 75.6 15.1 167 168-344 5-192 (438)
122 COG3903 Predicted ATPase [Gene 98.0 6.5E-06 1.4E-10 85.9 6.3 236 195-441 13-258 (414)
123 PLN03150 hypothetical protein; 98.0 9.9E-06 2.1E-10 94.5 8.5 102 528-629 419-525 (623)
124 PF13855 LRR_8: Leucine rich r 98.0 2.4E-06 5.3E-11 66.1 2.2 58 741-799 1-60 (61)
125 PF14516 AAA_35: AAA-like doma 98.0 0.00063 1.4E-08 72.9 21.4 201 168-385 10-246 (331)
126 TIGR00767 rho transcription te 98.0 1.9E-05 4.1E-10 83.7 9.4 90 195-285 167-265 (415)
127 PRK11331 5-methylcytosine-spec 98.0 3.2E-05 6.9E-10 83.5 10.9 119 169-299 175-297 (459)
128 PRK06647 DNA polymerase III su 98.0 0.00015 3.3E-09 82.5 16.9 194 169-378 16-220 (563)
129 PRK06620 hypothetical protein; 98.0 0.00012 2.6E-09 72.9 14.1 135 197-376 45-187 (214)
130 KOG0989 Replication factor C, 98.0 4.6E-05 9.9E-10 76.1 10.8 189 169-378 36-231 (346)
131 PHA02544 44 clamp loader, smal 98.0 5.7E-05 1.2E-09 81.2 12.7 148 169-343 21-171 (316)
132 PRK14965 DNA polymerase III su 98.0 0.0001 2.3E-09 84.7 15.5 194 169-378 16-221 (576)
133 TIGR00362 DnaA chromosomal rep 98.0 0.00014 3E-09 80.8 15.8 158 196-375 136-307 (405)
134 TIGR03345 VI_ClpV1 type VI sec 98.0 9.2E-05 2E-09 88.8 15.0 152 169-344 187-362 (852)
135 KOG2120 SCF ubiquitin ligase, 98.0 3.7E-07 8E-12 89.7 -4.4 12 643-654 186-197 (419)
136 CHL00181 cbbX CbbX; Provisiona 98.0 0.00023 4.9E-09 74.3 15.9 136 196-347 59-211 (287)
137 KOG2120 SCF ubiquitin ligase, 98.0 1.5E-07 3.3E-12 92.4 -7.2 60 551-610 186-249 (419)
138 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 57.0 3.8 40 572-612 1-40 (44)
139 PRK05563 DNA polymerase III su 97.9 0.00037 8E-09 79.8 18.1 192 169-376 16-218 (559)
140 PRK15386 type III secretion pr 97.9 1.5E-05 3.3E-10 84.9 6.1 65 568-637 48-113 (426)
141 PRK03992 proteasome-activating 97.9 0.0001 2.3E-09 80.7 12.2 179 167-371 129-336 (389)
142 PRK12422 chromosomal replicati 97.9 0.0005 1.1E-08 76.3 17.5 154 196-371 141-306 (445)
143 PRK00149 dnaA chromosomal repl 97.9 0.0003 6.6E-09 79.1 15.9 158 196-375 148-319 (450)
144 TIGR02881 spore_V_K stage V sp 97.9 0.00015 3.3E-09 75.1 12.4 161 170-346 7-192 (261)
145 PRK07399 DNA polymerase III su 97.8 0.00048 1E-08 72.8 16.2 195 170-378 5-221 (314)
146 PF05673 DUF815: Protein of un 97.8 0.00057 1.2E-08 67.4 14.7 109 166-301 24-133 (249)
147 PRK14088 dnaA chromosomal repl 97.8 0.00027 5.9E-09 78.6 14.3 158 196-374 130-301 (440)
148 PRK14086 dnaA chromosomal repl 97.8 0.00051 1.1E-08 77.5 15.4 155 197-373 315-483 (617)
149 PRK05707 DNA polymerase III su 97.8 0.00036 7.8E-09 74.1 13.6 167 196-378 22-203 (328)
150 TIGR02639 ClpA ATP-dependent C 97.7 0.0002 4.2E-09 85.5 12.5 156 169-345 182-358 (731)
151 CHL00095 clpC Clp protease ATP 97.7 0.00025 5.3E-09 85.7 13.3 154 169-343 179-352 (821)
152 TIGR02880 cbbX_cfxQ probable R 97.7 0.00039 8.5E-09 72.6 12.7 133 198-346 60-209 (284)
153 COG3267 ExeA Type II secretory 97.7 0.002 4.3E-08 63.3 16.3 183 195-382 50-249 (269)
154 COG0593 DnaA ATPase involved i 97.7 0.0019 4.2E-08 69.3 17.2 138 195-349 112-261 (408)
155 KOG2982 Uncharacterized conser 97.7 1.6E-05 3.5E-10 78.4 1.5 199 570-795 69-286 (418)
156 TIGR00763 lon ATP-dependent pr 97.7 0.0017 3.7E-08 78.1 18.7 165 169-345 320-505 (775)
157 PRK06090 DNA polymerase III su 97.6 0.001 2.3E-08 69.8 14.7 176 177-378 11-201 (319)
158 KOG2004 Mitochondrial ATP-depe 97.6 0.0016 3.5E-08 72.5 16.1 166 168-345 410-596 (906)
159 PRK10787 DNA-binding ATP-depen 97.6 0.0012 2.6E-08 78.5 16.4 166 168-345 321-506 (784)
160 KOG4341 F-box protein containi 97.6 3.1E-06 6.6E-11 87.5 -4.5 287 572-892 138-440 (483)
161 KOG1859 Leucine-rich repeat pr 97.6 2.5E-06 5.4E-11 93.8 -5.8 127 526-655 163-292 (1096)
162 PRK08116 hypothetical protein; 97.6 0.00021 4.5E-09 73.8 8.4 104 197-315 115-221 (268)
163 PRK08769 DNA polymerase III su 97.6 0.0015 3.2E-08 68.7 14.8 97 273-379 111-209 (319)
164 KOG1859 Leucine-rich repeat pr 97.6 4.4E-06 9.6E-11 91.9 -4.2 87 566-656 181-268 (1096)
165 PRK06871 DNA polymerase III su 97.6 0.0022 4.7E-08 67.6 15.6 177 178-376 11-201 (325)
166 PRK08058 DNA polymerase III su 97.5 0.00085 1.9E-08 71.8 12.7 162 170-343 6-180 (329)
167 PF00004 AAA: ATPase family as 97.5 0.00011 2.4E-09 67.4 5.1 21 199-219 1-21 (132)
168 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00092 2E-08 81.1 14.1 154 169-345 173-349 (852)
169 TIGR00602 rad24 checkpoint pro 97.5 0.0004 8.6E-09 79.5 10.2 206 167-377 82-322 (637)
170 PF13177 DNA_pol3_delta2: DNA 97.5 0.00062 1.3E-08 64.5 9.7 139 173-333 1-162 (162)
171 KOG4341 F-box protein containi 97.5 1E-05 2.2E-10 83.8 -2.7 294 550-882 138-455 (483)
172 PRK10865 protein disaggregatio 97.5 0.0015 3.1E-08 79.0 14.9 153 169-345 178-354 (857)
173 PRK15386 type III secretion pr 97.5 0.00025 5.3E-09 75.8 7.4 76 698-799 48-123 (426)
174 PRK10536 hypothetical protein; 97.5 0.0015 3.3E-08 65.3 12.4 136 169-316 55-214 (262)
175 KOG3665 ZYG-1-like serine/thre 97.5 4.5E-05 9.6E-10 88.7 1.7 81 571-653 147-231 (699)
176 smart00382 AAA ATPases associa 97.5 0.00048 1E-08 64.0 8.5 87 197-287 3-90 (148)
177 KOG4579 Leucine-rich repeat (L 97.4 2.8E-05 6E-10 67.9 -0.5 105 532-637 32-141 (177)
178 KOG1514 Origin recognition com 97.4 0.004 8.7E-08 69.6 15.8 208 168-382 395-625 (767)
179 COG0542 clpA ATP-binding subun 97.4 0.0034 7.3E-08 72.5 15.7 134 169-313 491-642 (786)
180 PRK11034 clpA ATP-dependent Cl 97.4 0.001 2.2E-08 78.4 11.9 156 169-345 186-362 (758)
181 TIGR03689 pup_AAA proteasome A 97.4 0.0018 4E-08 72.2 13.2 165 169-345 182-378 (512)
182 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.4E-09 51.1 3.1 40 595-635 1-40 (44)
183 COG0466 Lon ATP-dependent Lon 97.4 0.0037 8.1E-08 70.1 14.9 166 168-345 322-508 (782)
184 COG1373 Predicted ATPase (AAA+ 97.4 0.0023 5E-08 70.2 13.3 119 198-341 39-163 (398)
185 PRK07993 DNA polymerase III su 97.3 0.006 1.3E-07 65.1 15.2 180 177-377 10-203 (334)
186 KOG4579 Leucine-rich repeat (L 97.3 2.5E-05 5.4E-10 68.2 -2.3 89 565-654 46-135 (177)
187 PTZ00361 26 proteosome regulat 97.3 0.0008 1.7E-08 73.9 8.7 158 169-346 183-368 (438)
188 PRK08181 transposase; Validate 97.3 0.00058 1.3E-08 70.0 7.1 101 197-315 107-209 (269)
189 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0023 5E-08 77.7 13.4 138 169-314 565-717 (852)
190 COG5238 RNA1 Ran GTPase-activa 97.3 0.0001 2.2E-09 72.0 1.4 13 853-865 301-313 (388)
191 PRK12377 putative replication 97.3 0.00066 1.4E-08 68.7 7.2 102 196-314 101-205 (248)
192 PF01695 IstB_IS21: IstB-like 97.2 0.00036 7.9E-09 67.1 4.9 100 196-314 47-149 (178)
193 PTZ00454 26S protease regulato 97.2 0.0033 7.1E-08 68.7 12.7 179 169-372 145-351 (398)
194 PRK10865 protein disaggregatio 97.2 0.0022 4.9E-08 77.4 12.6 138 169-314 568-720 (857)
195 TIGR02639 ClpA ATP-dependent C 97.2 0.0029 6.4E-08 75.6 13.4 121 169-302 454-580 (731)
196 PF04665 Pox_A32: Poxvirus A32 97.2 0.00051 1.1E-08 68.3 5.8 36 197-234 14-49 (241)
197 COG2812 DnaX DNA polymerase II 97.2 0.0022 4.7E-08 71.1 11.0 188 170-373 17-215 (515)
198 COG5238 RNA1 Ran GTPase-activa 97.2 0.00029 6.2E-09 69.0 3.6 81 526-606 29-131 (388)
199 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.7E-09 85.0 1.4 128 526-655 121-263 (699)
200 KOG0991 Replication factor C, 97.2 0.0027 5.9E-08 60.9 10.0 44 169-218 27-70 (333)
201 PRK06964 DNA polymerase III su 97.2 0.0047 1E-07 65.7 12.9 94 273-378 130-225 (342)
202 PRK08118 topology modulation p 97.2 0.00015 3.3E-09 69.1 1.5 34 198-231 3-37 (167)
203 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0087 1.9E-07 61.9 14.3 139 198-344 23-197 (262)
204 PRK08939 primosomal protein Dn 97.1 0.0012 2.5E-08 69.5 7.8 121 173-313 135-259 (306)
205 KOG1644 U2-associated snRNP A' 97.1 0.00061 1.3E-08 64.0 4.9 60 742-803 43-103 (233)
206 CHL00176 ftsH cell division pr 97.1 0.0048 1E-07 71.4 12.9 177 169-370 183-386 (638)
207 KOG1644 U2-associated snRNP A' 97.1 0.00065 1.4E-08 63.9 4.5 106 702-833 42-150 (233)
208 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0015 3.3E-08 78.6 8.9 137 168-314 565-718 (852)
209 KOG2982 Uncharacterized conser 97.1 0.00017 3.7E-09 71.5 0.6 25 847-871 241-265 (418)
210 COG1222 RPT1 ATP-dependent 26S 97.0 0.013 2.9E-07 60.4 13.8 189 169-383 151-372 (406)
211 TIGR01241 FtsH_fam ATP-depende 97.0 0.011 2.3E-07 67.6 15.0 178 169-371 55-259 (495)
212 PRK06526 transposase; Provisio 97.0 0.0012 2.5E-08 67.5 6.3 100 197-315 99-201 (254)
213 PRK09183 transposase/IS protei 97.0 0.0019 4.1E-08 66.5 7.9 100 197-314 103-205 (259)
214 PRK07952 DNA replication prote 97.0 0.0029 6.3E-08 63.9 9.0 103 196-314 99-204 (244)
215 PRK06921 hypothetical protein; 97.0 0.002 4.4E-08 66.4 8.1 99 196-314 117-224 (266)
216 PRK04132 replication factor C 97.0 0.012 2.6E-07 69.6 14.9 155 204-378 574-731 (846)
217 PF07728 AAA_5: AAA domain (dy 97.0 0.00038 8.2E-09 64.5 2.1 88 199-300 2-90 (139)
218 PF10443 RNA12: RNA12 protein; 97.0 0.026 5.6E-07 60.5 15.8 203 174-389 1-289 (431)
219 PF07693 KAP_NTPase: KAP famil 97.0 0.026 5.7E-07 60.9 16.6 42 175-219 2-43 (325)
220 PRK13531 regulatory ATPase Rav 96.9 0.0029 6.3E-08 69.3 8.8 151 170-344 21-193 (498)
221 PRK04296 thymidine kinase; Pro 96.9 0.0017 3.8E-08 63.5 6.4 113 197-316 3-117 (190)
222 PRK06835 DNA replication prote 96.9 0.001 2.2E-08 70.5 5.1 102 197-314 184-288 (329)
223 PRK07261 topology modulation p 96.9 0.0018 3.9E-08 62.1 6.4 65 198-285 2-67 (171)
224 PRK12608 transcription termina 96.9 0.0048 1E-07 65.4 9.7 101 177-284 119-229 (380)
225 CHL00095 clpC Clp protease ATP 96.9 0.0033 7.2E-08 76.1 9.5 138 169-314 509-661 (821)
226 COG1484 DnaC DNA replication p 96.9 0.0021 4.7E-08 65.6 6.7 81 196-293 105-185 (254)
227 COG2607 Predicted ATPase (AAA+ 96.8 0.0045 9.8E-08 60.0 8.2 122 166-314 57-182 (287)
228 TIGR02237 recomb_radB DNA repa 96.8 0.0037 8E-08 62.5 8.2 48 195-245 11-58 (209)
229 COG0470 HolB ATPase involved i 96.8 0.0057 1.2E-07 66.1 9.7 142 170-331 2-167 (325)
230 PRK11034 clpA ATP-dependent Cl 96.8 0.0091 2E-07 70.5 11.8 123 169-302 458-584 (758)
231 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0015 3.2E-08 68.9 4.3 50 170-219 52-101 (361)
232 PRK09361 radB DNA repair and r 96.7 0.0072 1.6E-07 61.2 9.3 46 195-243 22-67 (225)
233 PHA00729 NTP-binding motif con 96.7 0.013 2.9E-07 57.7 10.6 24 196-219 17-40 (226)
234 TIGR02902 spore_lonB ATP-depen 96.7 0.0089 1.9E-07 68.4 10.6 43 170-218 66-108 (531)
235 PRK08699 DNA polymerase III su 96.7 0.011 2.5E-07 62.7 10.6 70 274-343 112-183 (325)
236 PF05659 RPW8: Arabidopsis bro 96.6 0.031 6.7E-07 51.3 11.7 83 2-84 3-86 (147)
237 KOG2228 Origin recognition com 96.6 0.026 5.7E-07 57.7 11.9 172 170-345 25-219 (408)
238 PRK05541 adenylylsulfate kinas 96.6 0.0037 7.9E-08 60.6 5.9 36 195-232 6-41 (176)
239 PF14532 Sigma54_activ_2: Sigm 96.6 0.00098 2.1E-08 61.5 1.5 108 172-315 1-110 (138)
240 KOG0741 AAA+-type ATPase [Post 96.5 0.089 1.9E-06 57.1 15.6 149 194-368 536-704 (744)
241 cd01393 recA_like RecA is a b 96.5 0.015 3.2E-07 59.0 9.9 88 195-285 18-124 (226)
242 KOG0733 Nuclear AAA ATPase (VC 96.5 0.028 6.1E-07 61.9 12.1 178 169-371 190-395 (802)
243 cd01394 radB RadB. The archaea 96.5 0.012 2.6E-07 59.2 9.0 43 195-239 18-60 (218)
244 PF00158 Sigma54_activat: Sigm 96.5 0.0042 9.2E-08 59.1 5.2 132 171-314 1-143 (168)
245 PF13207 AAA_17: AAA domain; P 96.5 0.0019 4.1E-08 58.1 2.7 21 198-218 1-21 (121)
246 KOG0735 AAA+-type ATPase [Post 96.4 0.031 6.7E-07 62.7 12.2 153 195-371 430-608 (952)
247 cd01133 F1-ATPase_beta F1 ATP 96.4 0.013 2.9E-07 59.6 8.7 87 196-284 69-172 (274)
248 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.0093 2E-07 60.9 7.8 89 195-284 18-124 (235)
249 TIGR01243 CDC48 AAA family ATP 96.4 0.017 3.7E-07 69.4 11.1 181 168-373 177-382 (733)
250 KOG0730 AAA+-type ATPase [Post 96.4 0.034 7.3E-07 62.1 12.0 61 164-226 429-496 (693)
251 PF02562 PhoH: PhoH-like prote 96.4 0.0066 1.4E-07 59.1 6.0 129 173-316 4-157 (205)
252 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.016 3.5E-07 54.0 7.8 117 197-316 3-139 (159)
253 PRK06696 uridine kinase; Valid 96.3 0.0091 2E-07 60.2 6.8 43 173-218 2-44 (223)
254 KOG2035 Replication factor C, 96.3 0.031 6.6E-07 55.5 9.8 208 171-401 15-261 (351)
255 COG1875 NYN ribonuclease and A 96.3 0.0084 1.8E-07 61.9 6.2 137 171-316 226-389 (436)
256 COG4608 AppF ABC-type oligopep 96.2 0.02 4.2E-07 57.5 8.5 125 196-323 39-178 (268)
257 PRK13695 putative NTPase; Prov 96.2 0.0055 1.2E-07 59.2 4.6 21 199-219 3-23 (174)
258 cd03247 ABCC_cytochrome_bd The 96.2 0.015 3.3E-07 56.3 7.4 118 196-319 28-161 (178)
259 cd03228 ABCC_MRP_Like The MRP 96.2 0.022 4.8E-07 54.8 8.5 120 196-319 28-159 (171)
260 COG1136 SalX ABC-type antimicr 96.2 0.034 7.4E-07 54.8 9.7 62 261-322 146-210 (226)
261 cd03214 ABC_Iron-Siderophores_ 96.2 0.031 6.6E-07 54.3 9.5 119 196-318 25-161 (180)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.024 5.1E-07 52.7 8.3 104 196-318 26-130 (144)
263 COG0542 clpA ATP-binding subun 96.1 0.019 4.1E-07 66.6 9.1 154 169-343 170-344 (786)
264 PRK11889 flhF flagellar biosyn 96.1 0.037 8E-07 59.0 10.5 89 195-285 240-330 (436)
265 TIGR02012 tigrfam_recA protein 96.1 0.016 3.4E-07 60.9 7.8 83 195-284 54-142 (321)
266 cd03238 ABC_UvrA The excision 96.1 0.02 4.3E-07 54.9 7.9 122 196-329 21-161 (176)
267 COG2884 FtsE Predicted ATPase 96.1 0.038 8.2E-07 51.9 9.2 124 196-322 28-204 (223)
268 TIGR01650 PD_CobS cobaltochela 96.1 0.11 2.5E-06 54.3 13.8 60 171-243 47-106 (327)
269 cd01120 RecA-like_NTPases RecA 96.1 0.027 5.8E-07 53.6 8.8 40 198-239 1-40 (165)
270 TIGR03499 FlhF flagellar biosy 96.1 0.02 4.2E-07 59.9 8.3 88 195-284 193-281 (282)
271 KOG1969 DNA replication checkp 96.1 0.011 2.3E-07 66.5 6.5 87 193-299 323-411 (877)
272 cd03223 ABCD_peroxisomal_ALDP 96.1 0.039 8.4E-07 52.7 9.6 117 196-319 27-152 (166)
273 cd00983 recA RecA is a bacter 96.0 0.018 4E-07 60.4 7.7 83 195-284 54-142 (325)
274 TIGR01243 CDC48 AAA family ATP 96.0 0.086 1.9E-06 63.4 14.5 179 169-372 453-657 (733)
275 COG1223 Predicted ATPase (AAA+ 96.0 0.064 1.4E-06 52.7 10.6 158 168-346 120-298 (368)
276 cd01131 PilT Pilus retraction 96.0 0.011 2.4E-07 58.3 5.7 109 197-319 2-113 (198)
277 PRK07132 DNA polymerase III su 96.0 0.24 5.3E-06 51.8 15.8 156 196-377 18-184 (299)
278 COG0572 Udk Uridine kinase [Nu 96.0 0.016 3.4E-07 56.5 6.4 77 195-276 7-85 (218)
279 PF00448 SRP54: SRP54-type pro 96.0 0.023 5.1E-07 55.6 7.7 88 196-285 1-93 (196)
280 PRK11608 pspF phage shock prot 96.0 0.017 3.8E-07 61.8 7.4 133 170-314 7-150 (326)
281 COG1618 Predicted nucleotide k 96.0 0.0066 1.4E-07 55.1 3.5 23 197-219 6-28 (179)
282 PRK15455 PrkA family serine pr 96.0 0.0044 9.5E-08 68.8 2.8 49 170-218 77-125 (644)
283 PRK08233 hypothetical protein; 95.9 0.021 4.6E-07 55.6 7.4 24 196-219 3-26 (182)
284 PRK09354 recA recombinase A; P 95.9 0.023 5E-07 60.2 8.0 83 195-284 59-147 (349)
285 CHL00195 ycf46 Ycf46; Provisio 95.9 0.066 1.4E-06 60.1 12.0 180 169-372 228-429 (489)
286 KOG1051 Chaperone HSP104 and r 95.9 0.039 8.5E-07 65.0 10.2 122 170-302 563-687 (898)
287 PTZ00301 uridine kinase; Provi 95.9 0.017 3.6E-07 57.2 6.2 24 195-218 2-25 (210)
288 PF03215 Rad17: Rad17 cell cyc 95.9 0.02 4.3E-07 64.6 7.6 60 169-233 19-78 (519)
289 TIGR01817 nifA Nif-specific re 95.8 0.063 1.4E-06 62.1 11.8 135 167-314 194-340 (534)
290 cd03216 ABC_Carb_Monos_I This 95.8 0.025 5.4E-07 53.8 7.1 115 196-317 26-144 (163)
291 cd03222 ABC_RNaseL_inhibitor T 95.8 0.037 8E-07 53.1 8.2 103 196-319 25-136 (177)
292 PF00485 PRK: Phosphoribulokin 95.8 0.03 6.6E-07 55.1 7.8 80 198-279 1-87 (194)
293 PF07724 AAA_2: AAA domain (Cd 95.8 0.0026 5.6E-08 60.7 0.1 41 196-238 3-44 (171)
294 KOG2739 Leucine-rich acidic nu 95.8 0.0047 1E-07 60.9 1.8 81 571-652 42-126 (260)
295 PRK09270 nucleoside triphospha 95.7 0.037 8E-07 56.1 8.3 25 194-218 31-55 (229)
296 cd03115 SRP The signal recogni 95.7 0.039 8.4E-07 53.2 8.0 21 198-218 2-22 (173)
297 PRK12727 flagellar biosynthesi 95.7 0.042 9E-07 61.1 9.0 89 195-285 349-438 (559)
298 PRK06067 flagellar accessory p 95.7 0.033 7.2E-07 56.7 7.9 86 195-285 24-130 (234)
299 cd02025 PanK Pantothenate kina 95.7 0.037 8.1E-07 55.4 8.0 73 198-273 1-76 (220)
300 cd03246 ABCC_Protease_Secretio 95.7 0.035 7.5E-07 53.5 7.5 120 196-319 28-160 (173)
301 cd03230 ABC_DR_subfamily_A Thi 95.7 0.034 7.5E-07 53.5 7.5 118 196-319 26-159 (173)
302 PRK15429 formate hydrogenlyase 95.7 0.033 7.2E-07 66.4 8.9 134 169-314 376-520 (686)
303 PF00560 LRR_1: Leucine Rich R 95.7 0.0043 9.3E-08 36.3 0.7 19 574-592 2-20 (22)
304 PF13604 AAA_30: AAA domain; P 95.6 0.04 8.8E-07 54.1 8.0 107 197-315 19-131 (196)
305 COG0468 RecA RecA/RadA recombi 95.6 0.048 1E-06 55.9 8.6 89 194-284 58-150 (279)
306 PTZ00494 tuzin-like protein; P 95.6 0.14 3E-06 54.8 11.9 165 166-344 368-543 (664)
307 TIGR02238 recomb_DMC1 meiotic 95.6 0.043 9.3E-07 58.0 8.5 89 195-284 95-200 (313)
308 PF08423 Rad51: Rad51; InterP 95.6 0.036 7.9E-07 56.9 7.5 89 195-284 37-142 (256)
309 KOG1532 GTPase XAB1, interacts 95.6 0.039 8.3E-07 54.6 7.1 62 194-255 17-87 (366)
310 PRK03839 putative kinase; Prov 95.5 0.02 4.2E-07 55.7 5.3 22 198-219 2-23 (180)
311 PRK07667 uridine kinase; Provi 95.5 0.024 5.2E-07 55.6 5.9 37 178-218 3-39 (193)
312 TIGR02974 phageshock_pspF psp 95.5 0.033 7.1E-07 59.6 7.3 45 171-219 1-45 (329)
313 KOG3864 Uncharacterized conser 95.5 0.00059 1.3E-08 64.2 -5.2 64 821-890 123-188 (221)
314 PRK05703 flhF flagellar biosyn 95.5 0.068 1.5E-06 59.1 9.9 88 196-285 221-309 (424)
315 PRK05917 DNA polymerase III su 95.5 0.21 4.5E-06 51.7 12.6 130 177-332 5-154 (290)
316 KOG2739 Leucine-rich acidic nu 95.5 0.0063 1.4E-07 60.0 1.6 83 570-654 63-155 (260)
317 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.029 6.2E-07 55.4 6.2 121 196-323 29-159 (204)
318 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.02 4.2E-07 57.1 5.1 121 196-321 29-160 (213)
319 TIGR00554 panK_bact pantothena 95.5 0.067 1.5E-06 55.5 9.1 80 194-275 60-141 (290)
320 PRK14722 flhF flagellar biosyn 95.4 0.045 9.8E-07 58.8 7.9 86 196-285 137-225 (374)
321 PRK04301 radA DNA repair and r 95.4 0.043 9.4E-07 58.6 7.9 56 195-251 101-160 (317)
322 PRK05439 pantothenate kinase; 95.4 0.072 1.6E-06 55.8 9.2 79 194-276 84-166 (311)
323 PF12775 AAA_7: P-loop contain 95.4 0.013 2.7E-07 60.7 3.6 97 178-293 22-118 (272)
324 PLN03186 DNA repair protein RA 95.4 0.071 1.5E-06 56.9 9.3 58 195-253 122-183 (342)
325 PRK08533 flagellar accessory p 95.4 0.066 1.4E-06 54.1 8.6 48 196-247 24-71 (230)
326 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.064 1.4E-06 53.8 8.2 120 196-317 30-201 (254)
327 KOG2123 Uncharacterized conser 95.4 0.0016 3.5E-08 64.2 -3.0 36 570-606 39-74 (388)
328 TIGR00959 ffh signal recogniti 95.4 0.094 2E-06 57.7 10.2 24 195-218 98-121 (428)
329 PHA02244 ATPase-like protein 95.3 0.052 1.1E-06 57.5 7.8 21 198-218 121-141 (383)
330 PRK00889 adenylylsulfate kinas 95.3 0.042 9E-07 53.1 6.6 24 196-219 4-27 (175)
331 TIGR02239 recomb_RAD51 DNA rep 95.3 0.079 1.7E-06 56.2 9.2 57 195-252 95-155 (316)
332 PRK05022 anaerobic nitric oxid 95.3 0.066 1.4E-06 61.3 9.2 135 168-314 186-331 (509)
333 KOG2123 Uncharacterized conser 95.3 0.0023 5.1E-08 63.0 -2.2 84 570-656 17-102 (388)
334 cd02027 APSK Adenosine 5'-phos 95.2 0.04 8.7E-07 51.4 6.1 22 198-219 1-22 (149)
335 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.12 2.5E-06 52.7 10.0 49 195-247 20-68 (237)
336 PRK12726 flagellar biosynthesi 95.2 0.093 2E-06 55.8 9.3 89 195-285 205-295 (407)
337 PRK12724 flagellar biosynthesi 95.2 0.043 9.3E-07 59.3 6.9 24 195-218 222-245 (432)
338 cd01125 repA Hexameric Replica 95.2 0.099 2.2E-06 53.4 9.4 142 198-339 3-198 (239)
339 TIGR02858 spore_III_AA stage I 95.2 0.073 1.6E-06 54.8 8.3 129 177-319 97-233 (270)
340 PLN03187 meiotic recombination 95.2 0.084 1.8E-06 56.2 9.0 58 195-253 125-186 (344)
341 cd03229 ABC_Class3 This class 95.2 0.049 1.1E-06 52.7 6.8 24 196-219 26-49 (178)
342 COG0396 sufC Cysteine desulfur 95.2 0.12 2.7E-06 50.2 9.1 64 265-328 152-217 (251)
343 KOG0744 AAA+-type ATPase [Post 95.2 0.045 9.7E-07 55.6 6.4 79 196-284 177-259 (423)
344 PRK14974 cell division protein 95.2 0.1 2.2E-06 55.5 9.5 87 195-286 139-233 (336)
345 KOG0731 AAA+-type ATPase conta 95.2 0.36 7.8E-06 55.9 14.4 182 169-375 311-521 (774)
346 PLN00020 ribulose bisphosphate 95.2 0.037 8.1E-07 58.2 6.0 26 194-219 146-171 (413)
347 PRK12723 flagellar biosynthesi 95.1 0.11 2.4E-06 56.3 9.9 90 195-286 173-265 (388)
348 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.068 1.5E-06 52.9 7.7 119 196-319 26-168 (200)
349 TIGR02236 recomb_radA DNA repa 95.1 0.071 1.5E-06 56.9 8.3 56 195-251 94-153 (310)
350 COG4618 ArpD ABC-type protease 95.1 0.18 3.8E-06 54.9 10.8 23 196-218 362-384 (580)
351 cd01122 GP4d_helicase GP4d_hel 95.1 0.14 3E-06 53.6 10.3 53 196-251 30-82 (271)
352 PRK07276 DNA polymerase III su 95.1 0.46 1E-05 49.3 13.7 70 273-343 102-173 (290)
353 PRK00771 signal recognition pa 95.1 0.096 2.1E-06 57.8 9.3 57 195-253 94-151 (437)
354 TIGR00708 cobA cob(I)alamin ad 95.1 0.12 2.5E-06 48.9 8.5 118 196-315 5-140 (173)
355 TIGR00390 hslU ATP-dependent p 95.1 0.05 1.1E-06 58.6 6.8 81 169-251 12-104 (441)
356 COG1102 Cmk Cytidylate kinase 95.0 0.041 8.9E-07 50.2 5.1 44 198-254 2-45 (179)
357 cd02028 UMPK_like Uridine mono 95.0 0.038 8.3E-07 53.4 5.5 21 198-218 1-21 (179)
358 PF13238 AAA_18: AAA domain; P 95.0 0.015 3.2E-07 52.9 2.5 21 199-219 1-21 (129)
359 cd02019 NK Nucleoside/nucleoti 95.0 0.014 3.1E-07 46.1 2.0 21 198-218 1-21 (69)
360 PRK13539 cytochrome c biogenes 95.0 0.072 1.6E-06 53.0 7.5 63 267-332 137-201 (207)
361 PRK06002 fliI flagellum-specif 95.0 0.099 2.1E-06 57.3 9.0 86 196-284 165-263 (450)
362 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.2 4.3E-06 49.9 10.6 23 196-218 34-56 (207)
363 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.056 1.2E-06 51.1 6.3 117 196-320 25-145 (157)
364 PTZ00035 Rad51 protein; Provis 94.9 0.17 3.7E-06 54.1 10.5 89 195-284 117-222 (337)
365 TIGR00235 udk uridine kinase. 94.9 0.021 4.6E-07 56.8 3.4 24 195-218 5-28 (207)
366 PF13671 AAA_33: AAA domain; P 94.9 0.02 4.3E-07 53.2 3.1 21 198-218 1-21 (143)
367 KOG0743 AAA+-type ATPase [Post 94.9 0.35 7.5E-06 52.1 12.4 122 197-347 236-385 (457)
368 PRK10867 signal recognition pa 94.9 0.081 1.8E-06 58.2 8.0 24 195-218 99-122 (433)
369 PRK05480 uridine/cytidine kina 94.8 0.019 4.2E-07 57.3 3.0 24 195-218 5-28 (209)
370 PRK06217 hypothetical protein; 94.8 0.064 1.4E-06 52.2 6.5 22 198-219 3-24 (183)
371 smart00534 MUTSac ATPase domai 94.8 0.029 6.3E-07 54.7 3.9 119 198-322 1-129 (185)
372 KOG0728 26S proteasome regulat 94.8 0.95 2.1E-05 44.4 13.9 175 171-366 148-351 (404)
373 COG0464 SpoVK ATPases of the A 94.8 0.25 5.4E-06 56.6 12.2 158 169-346 242-424 (494)
374 PF00006 ATP-synt_ab: ATP synt 94.7 0.083 1.8E-06 52.3 7.0 84 197-284 16-114 (215)
375 cd03245 ABCC_bacteriocin_expor 94.7 0.17 3.6E-06 51.0 9.5 24 196-219 30-53 (220)
376 COG0563 Adk Adenylate kinase a 94.7 0.037 8E-07 53.1 4.4 22 198-219 2-23 (178)
377 PRK10733 hflB ATP-dependent me 94.7 0.29 6.3E-06 57.6 12.7 157 170-346 153-336 (644)
378 TIGR00064 ftsY signal recognit 94.7 0.11 2.3E-06 53.9 8.1 88 195-285 71-164 (272)
379 PF01583 APS_kinase: Adenylyls 94.7 0.039 8.4E-07 51.2 4.2 36 196-233 2-37 (156)
380 PF08433 KTI12: Chromatin asso 94.7 0.045 9.8E-07 56.4 5.1 23 197-219 2-24 (270)
381 KOG1947 Leucine rich repeat pr 94.7 0.0037 8.1E-08 71.8 -3.2 36 570-605 186-224 (482)
382 PRK06547 hypothetical protein; 94.7 0.037 8.1E-07 52.9 4.2 25 195-219 14-38 (172)
383 PF08298 AAA_PrkA: PrkA AAA do 94.6 0.031 6.7E-07 58.5 3.9 50 169-218 61-110 (358)
384 COG2842 Uncharacterized ATPase 94.6 0.55 1.2E-05 47.8 12.4 99 196-302 94-192 (297)
385 PRK08972 fliI flagellum-specif 94.6 0.13 2.8E-06 56.1 8.6 85 196-284 162-261 (444)
386 TIGR00382 clpX endopeptidase C 94.6 0.13 2.9E-06 56.1 8.8 51 168-218 76-138 (413)
387 PRK05201 hslU ATP-dependent pr 94.6 0.061 1.3E-06 58.0 6.0 82 168-251 14-107 (443)
388 PF07726 AAA_3: ATPase family 94.6 0.034 7.4E-07 49.1 3.4 27 199-227 2-28 (131)
389 cd01124 KaiC KaiC is a circadi 94.6 0.099 2.1E-06 51.1 7.2 45 198-246 1-45 (187)
390 cd03215 ABC_Carb_Monos_II This 94.6 0.16 3.5E-06 49.3 8.6 24 196-219 26-49 (182)
391 PTZ00088 adenylate kinase 1; P 94.6 0.029 6.4E-07 56.3 3.4 20 199-218 9-28 (229)
392 KOG0734 AAA+-type ATPase conta 94.6 0.06 1.3E-06 58.4 5.8 52 169-220 304-361 (752)
393 PF12061 DUF3542: Protein of u 94.5 0.1 2.3E-06 52.5 7.0 76 9-84 297-373 (402)
394 COG1419 FlhF Flagellar GTP-bin 94.5 0.1 2.2E-06 55.7 7.4 88 195-285 202-291 (407)
395 PRK06762 hypothetical protein; 94.5 0.024 5.3E-07 54.2 2.7 23 196-218 2-24 (166)
396 TIGR00150 HI0065_YjeE ATPase, 94.5 0.042 9.1E-07 49.5 3.9 40 176-219 6-45 (133)
397 COG4088 Predicted nucleotide k 94.5 0.11 2.5E-06 49.3 6.7 22 197-218 2-23 (261)
398 cd03233 ABC_PDR_domain1 The pl 94.5 0.22 4.8E-06 49.3 9.4 24 196-219 33-56 (202)
399 PRK03846 adenylylsulfate kinas 94.4 0.081 1.8E-06 52.2 6.2 24 195-218 23-46 (198)
400 COG0467 RAD55 RecA-superfamily 94.4 0.071 1.5E-06 55.3 6.1 51 195-249 22-72 (260)
401 PRK10820 DNA-binding transcrip 94.4 0.1 2.2E-06 59.8 7.9 134 169-315 204-349 (520)
402 cd01135 V_A-ATPase_B V/A-type 94.4 0.21 4.6E-06 50.9 9.2 89 196-284 69-175 (276)
403 KOG0733 Nuclear AAA ATPase (VC 94.4 0.36 7.8E-06 53.6 11.3 155 196-372 545-718 (802)
404 cd01121 Sms Sms (bacterial rad 94.4 0.16 3.5E-06 55.0 8.9 82 195-284 81-167 (372)
405 PRK05973 replicative DNA helic 94.4 0.18 4E-06 50.6 8.5 50 195-248 63-112 (237)
406 cd03283 ABC_MutS-like MutS-lik 94.4 0.052 1.1E-06 53.4 4.6 22 197-218 26-47 (199)
407 PRK05986 cob(I)alamin adenolsy 94.3 0.15 3.2E-06 49.0 7.4 118 196-315 22-158 (191)
408 PRK14721 flhF flagellar biosyn 94.3 0.18 4E-06 55.1 9.1 88 195-284 190-278 (420)
409 cd03244 ABCC_MRP_domain2 Domai 94.3 0.21 4.6E-06 50.3 9.2 24 196-219 30-53 (221)
410 COG1126 GlnQ ABC-type polar am 94.3 0.42 9E-06 46.3 10.2 23 196-218 28-50 (240)
411 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.3E-07 33.5 0.9 22 596-618 1-22 (22)
412 TIGR03498 FliI_clade3 flagella 94.3 0.14 3E-06 56.0 8.1 85 196-284 140-239 (418)
413 TIGR01360 aden_kin_iso1 adenyl 94.3 0.032 6.9E-07 54.7 2.9 24 195-218 2-25 (188)
414 PRK04040 adenylate kinase; Pro 94.3 0.032 6.9E-07 54.3 2.8 22 197-218 3-24 (188)
415 cd01136 ATPase_flagellum-secre 94.2 0.27 5.8E-06 51.9 9.8 85 196-284 69-168 (326)
416 PF00154 RecA: recA bacterial 94.2 0.081 1.8E-06 55.4 5.9 83 195-284 52-140 (322)
417 cd03213 ABCG_EPDR ABCG transpo 94.2 0.17 3.7E-06 49.7 8.0 117 196-315 35-171 (194)
418 KOG0729 26S proteasome regulat 94.2 0.16 3.4E-06 50.1 7.3 56 169-226 177-239 (435)
419 cd03251 ABCC_MsbA MsbA is an e 94.2 0.38 8.3E-06 48.9 10.9 24 196-219 28-51 (234)
420 PRK04328 hypothetical protein; 94.2 0.13 2.7E-06 52.8 7.3 47 195-245 22-68 (249)
421 TIGR01069 mutS2 MutS2 family p 94.2 0.023 4.9E-07 67.7 2.0 185 196-395 322-517 (771)
422 cd03232 ABC_PDR_domain2 The pl 94.2 0.12 2.7E-06 50.6 6.9 23 196-218 33-55 (192)
423 PRK07594 type III secretion sy 94.1 0.22 4.7E-06 54.6 9.2 85 196-284 155-254 (433)
424 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.24 5.2E-06 50.3 9.1 40 195-236 19-58 (229)
425 cd03253 ABCC_ATM1_transporter 94.1 0.28 6E-06 50.0 9.6 55 266-320 146-201 (236)
426 cd03240 ABC_Rad50 The catalyti 94.1 0.16 3.4E-06 50.4 7.4 54 267-320 131-188 (204)
427 PRK00625 shikimate kinase; Pro 94.1 0.033 7.1E-07 53.3 2.4 21 198-218 2-22 (173)
428 PRK08927 fliI flagellum-specif 94.0 0.2 4.3E-06 55.0 8.5 85 196-284 158-257 (442)
429 PF10236 DAP3: Mitochondrial r 94.0 0.25 5.5E-06 52.3 9.2 49 326-375 258-306 (309)
430 TIGR01420 pilT_fam pilus retra 94.0 0.097 2.1E-06 56.5 6.1 111 196-317 122-232 (343)
431 TIGR03522 GldA_ABC_ATP gliding 93.9 0.3 6.5E-06 51.8 9.7 24 196-219 28-51 (301)
432 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.17 3.8E-06 52.1 7.6 40 195-236 35-74 (259)
433 cd03285 ABC_MSH2_euk MutS2 hom 93.9 0.045 9.9E-07 54.9 3.2 121 195-322 29-160 (222)
434 PRK14723 flhF flagellar biosyn 93.9 0.24 5.2E-06 58.1 9.3 88 196-285 185-273 (767)
435 PRK08149 ATP synthase SpaL; Va 93.9 0.25 5.4E-06 54.1 9.0 85 196-284 151-250 (428)
436 cd03243 ABC_MutS_homologs The 93.9 0.074 1.6E-06 52.7 4.6 22 197-218 30-51 (202)
437 PRK06731 flhF flagellar biosyn 93.8 0.29 6.2E-06 50.4 8.9 89 196-286 75-165 (270)
438 PF00910 RNA_helicase: RNA hel 93.8 0.032 7E-07 48.7 1.7 21 199-219 1-21 (107)
439 PRK12597 F0F1 ATP synthase sub 93.8 0.22 4.9E-06 55.0 8.6 88 196-284 143-246 (461)
440 PF01078 Mg_chelatase: Magnesi 93.8 0.087 1.9E-06 51.1 4.8 42 169-218 3-44 (206)
441 PRK09280 F0F1 ATP synthase sub 93.8 0.21 4.5E-06 55.1 8.3 88 196-284 144-247 (463)
442 PLN02348 phosphoribulokinase 93.8 0.29 6.4E-06 52.5 9.1 24 195-218 48-71 (395)
443 cd02024 NRK1 Nicotinamide ribo 93.8 0.034 7.3E-07 53.7 2.0 22 198-219 1-22 (187)
444 PRK15453 phosphoribulokinase; 93.8 0.27 5.8E-06 50.3 8.4 78 195-274 4-89 (290)
445 PRK09580 sufC cysteine desulfu 93.8 0.36 7.9E-06 49.6 9.8 24 196-219 27-50 (248)
446 cd03254 ABCC_Glucan_exporter_l 93.8 0.44 9.4E-06 48.3 10.3 24 196-219 29-52 (229)
447 TIGR02322 phosphon_PhnN phosph 93.8 0.042 9E-07 53.3 2.6 23 197-219 2-24 (179)
448 COG1066 Sms Predicted ATP-depe 93.7 0.17 3.6E-06 53.7 6.9 82 195-285 92-178 (456)
449 PF13481 AAA_25: AAA domain; P 93.7 0.22 4.8E-06 48.9 7.8 41 197-237 33-81 (193)
450 PF03308 ArgK: ArgK protein; 93.7 0.099 2.2E-06 52.2 5.1 39 177-219 14-52 (266)
451 cd02023 UMPK Uridine monophosp 93.7 0.035 7.6E-07 54.9 2.0 21 198-218 1-21 (198)
452 cd02029 PRK_like Phosphoribulo 93.7 0.17 3.6E-06 51.2 6.7 76 198-275 1-84 (277)
453 PRK10751 molybdopterin-guanine 93.7 0.057 1.2E-06 51.2 3.2 25 195-219 5-29 (173)
454 TIGR01359 UMP_CMP_kin_fam UMP- 93.7 0.036 7.8E-07 54.0 2.0 21 198-218 1-21 (183)
455 PRK12678 transcription termina 93.7 0.12 2.5E-06 57.7 5.9 85 196-284 416-512 (672)
456 COG0714 MoxR-like ATPases [Gen 93.7 0.13 2.9E-06 55.3 6.5 110 170-300 25-137 (329)
457 PF03969 AFG1_ATPase: AFG1-lik 93.6 0.069 1.5E-06 57.5 4.2 101 195-314 61-166 (362)
458 PTZ00185 ATPase alpha subunit; 93.6 0.4 8.7E-06 53.0 9.8 89 196-284 189-298 (574)
459 TIGR00764 lon_rel lon-related 93.6 0.15 3.2E-06 59.3 7.2 74 169-253 18-92 (608)
460 TIGR00455 apsK adenylylsulfate 93.6 0.27 5.8E-06 47.9 8.0 24 195-218 17-40 (184)
461 KOG3347 Predicted nucleotide k 93.6 0.086 1.9E-06 47.3 3.9 69 196-274 7-75 (176)
462 COG1428 Deoxynucleoside kinase 93.6 0.043 9.4E-07 52.7 2.2 24 196-219 4-27 (216)
463 COG1703 ArgK Putative periplas 93.6 0.09 2E-06 53.3 4.5 64 179-246 38-101 (323)
464 cd00544 CobU Adenosylcobinamid 93.6 0.14 3.1E-06 48.6 5.8 79 199-284 2-82 (169)
465 PRK06995 flhF flagellar biosyn 93.5 0.25 5.3E-06 55.1 8.4 87 196-284 256-343 (484)
466 COG2019 AdkA Archaeal adenylat 93.5 0.058 1.3E-06 49.4 2.8 23 196-218 4-26 (189)
467 TIGR03575 selen_PSTK_euk L-ser 93.5 0.18 3.9E-06 53.5 7.0 21 199-219 2-22 (340)
468 cd01132 F1_ATPase_alpha F1 ATP 93.5 0.35 7.6E-06 49.4 8.7 85 196-284 69-170 (274)
469 COG2274 SunT ABC-type bacterio 93.5 0.34 7.3E-06 57.1 9.8 23 196-218 499-521 (709)
470 PRK05922 type III secretion sy 93.5 0.41 9E-06 52.5 9.8 85 196-284 157-256 (434)
471 PF03205 MobB: Molybdopterin g 93.5 0.086 1.9E-06 48.4 4.0 39 197-236 1-39 (140)
472 TIGR03496 FliI_clade1 flagella 93.5 0.29 6.3E-06 53.6 8.6 85 196-284 137-236 (411)
473 TIGR01425 SRP54_euk signal rec 93.4 0.3 6.6E-06 53.5 8.7 24 195-218 99-122 (429)
474 PRK11823 DNA repair protein Ra 93.4 0.46 9.9E-06 53.2 10.4 82 195-284 79-165 (446)
475 PRK10923 glnG nitrogen regulat 93.4 0.22 4.8E-06 56.8 8.2 47 169-219 138-184 (469)
476 COG1124 DppF ABC-type dipeptid 93.4 0.083 1.8E-06 51.9 3.9 23 196-218 33-55 (252)
477 cd02021 GntK Gluconate kinase 93.4 0.047 1E-06 51.1 2.2 22 198-219 1-22 (150)
478 TIGR02329 propionate_PrpR prop 93.4 0.13 2.8E-06 58.5 6.0 47 169-219 212-258 (526)
479 cd00984 DnaB_C DnaB helicase C 93.4 0.42 9.1E-06 48.9 9.4 54 195-251 12-65 (242)
480 PRK09099 type III secretion sy 93.3 0.28 6.2E-06 54.0 8.4 86 195-284 162-262 (441)
481 TIGR03263 guanyl_kin guanylate 93.3 0.057 1.2E-06 52.4 2.8 23 197-219 2-24 (180)
482 PF06745 KaiC: KaiC; InterPro 93.3 0.11 2.4E-06 52.5 4.9 86 195-284 18-124 (226)
483 PF03266 NTPase_1: NTPase; In 93.3 0.05 1.1E-06 51.7 2.2 21 199-219 2-22 (168)
484 PRK13765 ATP-dependent proteas 93.3 0.12 2.6E-06 59.9 5.6 75 169-253 31-105 (637)
485 PRK11388 DNA-binding transcrip 93.3 0.2 4.2E-06 59.5 7.6 131 169-314 325-466 (638)
486 COG0541 Ffh Signal recognition 93.3 0.74 1.6E-05 49.5 10.9 74 178-253 79-156 (451)
487 PRK08760 replicative DNA helic 93.2 3.8 8.3E-05 46.3 17.4 54 195-251 228-281 (476)
488 PRK00131 aroK shikimate kinase 93.2 0.054 1.2E-06 52.2 2.4 23 196-218 4-26 (175)
489 PF13504 LRR_7: Leucine rich r 93.2 0.054 1.2E-06 29.3 1.3 16 573-588 2-17 (17)
490 PRK10463 hydrogenase nickel in 93.2 0.44 9.6E-06 49.2 9.0 25 194-218 102-126 (290)
491 TIGR02655 circ_KaiC circadian 93.2 0.42 9.1E-06 54.3 9.9 49 195-247 262-310 (484)
492 TIGR00041 DTMP_kinase thymidyl 93.2 0.28 6.1E-06 48.3 7.5 23 197-219 4-26 (195)
493 COG0003 ArsA Predicted ATPase 93.2 0.13 2.9E-06 54.1 5.3 49 196-246 2-50 (322)
494 PF00625 Guanylate_kin: Guanyl 93.2 0.071 1.5E-06 51.9 3.2 36 196-233 2-37 (183)
495 cd00227 CPT Chloramphenicol (C 93.2 0.056 1.2E-06 52.2 2.4 23 197-219 3-25 (175)
496 KOG0652 26S proteasome regulat 93.1 0.71 1.5E-05 45.5 9.7 56 169-226 171-233 (424)
497 PRK09519 recA DNA recombinatio 93.1 0.28 6.2E-06 57.6 8.3 84 195-285 59-148 (790)
498 COG2401 ABC-type ATPase fused 93.1 0.13 2.7E-06 54.3 4.9 156 170-326 372-579 (593)
499 COG5635 Predicted NTPase (NACH 93.1 0.085 1.8E-06 64.2 4.2 137 196-338 222-371 (824)
500 PF10923 DUF2791: P-loop Domai 93.1 0.56 1.2E-05 51.1 9.9 81 170-255 26-113 (416)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-88 Score=787.54 Aligned_cols=621 Identities=27% Similarity=0.447 Sum_probs=510.0
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 042509 11 ERLISTTVGEAEEQVRLVVGVEQDVEKLKRNFRAIQAVLVDAEQKQVKEETVRLWLDQLKDASYDMEDVLDEWITARLKL 90 (892)
Q Consensus 11 ~~~~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~lD~~~~~~~~~ 90 (892)
+..++++.+.+.+++..+.+.++.+..|+++|..++++++||+.++.....+..|.+.+++++|++||+++.|.......
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~ 85 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIER 85 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778889999999999999999999999999999999988888999999999999999999999999888765
Q ss_pred hhhcCCccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc---cccCCCCccccccccC
Q 042509 91 QIEGAPHQRKKKVCSFIPASCFGVQQVFVRRDIALKIKAINERLDEIAEQKGMFNFNMNVI---KSIETPGRVQSVSFID 167 (892)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (892)
+..+....+ ....+ ..|++ .+++..+..+..+.+++-.+.+....+.....-. ....+...+++.+..+
T Consensus 86 ~~~~~l~~~-~~~~~---~~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 86 KANDLLSTR-SVERQ---RLCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHhHHhhhh-HHHHH---HHhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 433221100 00011 11111 3456666666666666666666666555332111 1111222345555555
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh-hhcccceeEEEEeCCCCCHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD-VRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
... ||.+..++++.+.|..++ .++++|+||||+||||||++++|+.. ++.+||.++||+||+.++...++++
T Consensus 158 ~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 158 ESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred ccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 555 999999999999999875 28999999999999999999999987 9999999999999999999999999
Q ss_pred HHHhccCCCCCCC--CHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhh-ccC
Q 042509 247 IIEGLEGETSNLG--SLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRM-MES 323 (892)
Q Consensus 247 i~~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~ 323 (892)
|++.++....... ..++++..|.+.|++|||+|||||||+. .+|+.+..++|....||+|++|||++.|+.. +++
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 9999877543332 3468899999999999999999999975 5699999999999999999999999999998 888
Q ss_pred CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhcccc--
Q 042509 324 TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSELWK-- 401 (892)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~-- 401 (892)
...++++.|+++|||+||++.++.... ..++.++++|++++++|+|+|||++++|+.|+.|++.++|+++.+...+.
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 889999999999999999999976543 33455999999999999999999999999999999999999999876554
Q ss_pred --ccccccchhhHHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCC-CchHHHHHHHHHHHHHhcc
Q 042509 402 --VEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKE-NKEMEIIGDEYFDYLATRS 478 (892)
Q Consensus 402 --~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~~e~~~~~~~~~L~~~~ 478 (892)
..+..+.+++++++||+.||+++|.||+|||+||+||.|+++.||.+|+|||||.+.. +.+++++|+.|+.+|++++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~ 467 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS 467 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence 2334578999999999999999999999999999999999999999999999999854 5679999999999999999
Q ss_pred CcccccccCCCceeeEEecHHHHHHHHhhcc-----CceeEeecC-C---CCCccccccceEEEEEeCCCCCccccccCC
Q 042509 479 FFQDFVKHGVNTVRKCKMHDVIHDFAQFLSK-----NERFSIGVD-D---PEESTSMEKLRHFMLVLGKSVAFPVSIFKA 549 (892)
Q Consensus 479 ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s~-----~e~~~~~~~-~---~~~~~~~~~lr~L~l~~~~~~~~p~~~~~~ 549 (892)
|++..... ++..+|+|||+||++|.+++. +++.++..+ + ......+..+|++++.+|.+..++.. ..+
T Consensus 468 Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~ 544 (889)
T KOG4658|consen 468 LLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SEN 544 (889)
T ss_pred HHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC-CCC
Confidence 99986543 677799999999999999999 666555543 1 22233567899999999998877744 455
Q ss_pred CcceEEEecCC---ccccChh-hcCcCCcceEEcCCCC-CCcccccccCCCCCCEEeccCcCCccccchhhhccccCCee
Q 042509 550 RKLRSLLIVGP---ICEIPKE-IENFMYLRFLKLSKAE-IVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYL 624 (892)
Q Consensus 550 ~~Lr~L~l~~~---~~~lp~~-i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 624 (892)
+.|++|.+.++ +..++.. |..+++|++|||++|. +.++|++|++|.+||+|+++++. +..+|.++++|++|.||
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhee
Confidence 68999999987 4556554 6889999999999887 88999999999999999999998 88999999999999999
Q ss_pred cccccc-cccccccccCCcCCCcCCceEec
Q 042509 625 IYNDSY-LHYLPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 625 ~~~~~~-l~~lp~~i~~L~~L~~L~l~~~~ 653 (892)
++..+. +..+|.....|++|++|.++...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666543 34444445569999999987765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-61 Score=594.91 Aligned_cols=684 Identities=20% Similarity=0.258 Sum_probs=431.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccccc-------cccCCCCccccccccCCCceecchhhHHHHHHHHhcCCcccccceE
Q 042509 125 LKIKAINERLDEIAEQKGMFNFNMNVI-------KSIETPGRVQSVSFIDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQ 197 (892)
Q Consensus 125 ~~i~~i~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 197 (892)
.+++++++.+.+++.... +....... ...........++..+.+.+|||++.++++..+|.... .+.+
T Consensus 134 ~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 467788888877766422 22111000 00001111112233455679999999999999886443 3689
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe---CCC-----------CC-HHHHHHHHHHhccCCCC-CCCCH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV---SDP-----------FD-EFSVAKSIIEGLEGETS-NLGSL 261 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~~ 261 (892)
+|+|+||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...+.++++.++..... ....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC-
Confidence 999999999999999999999 67889998887742 111 01 12334444444432211 1111
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhccCCceEeCCCCCHHHHHHHH
Q 042509 262 QSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 262 ~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
...+++.++++|+||||||||+. ..|+.+.......++||+||||||+..++..++...+|+++.+++++||+||
T Consensus 286 ---~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 286 ---LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ---HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 24567789999999999999854 5788887766667789999999999999988777889999999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhccccccccccchhhHHHhhhcCCh
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLP 421 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 421 (892)
+++||+...+ ..++.+++++|+++|+|+|||++++|++|+.+ +.++|+.+++..... .+..+..+|++||++|+
T Consensus 361 ~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 361 CRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLN 434 (1153)
T ss_pred HHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccC
Confidence 9999976433 34688999999999999999999999999876 689999999875433 23579999999999998
Q ss_pred H-hHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHHHHHHHHHHHhccCcccccccCCCceeeEEecHHH
Q 042509 422 S-RIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEIIGDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVI 500 (892)
Q Consensus 422 ~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv 500 (892)
+ ..|.||+++|+|+.++.++ .+..|+|.+..... .-++.|+++||++... + .+.|||++
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~~L~~ksLi~~~~----~---~~~MHdLl 494 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLKNLVDKSLIHVRE----D---IVEMHSLL 494 (1153)
T ss_pred ccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChHHHHhcCCEEEcC----C---eEEhhhHH
Confidence 7 5999999999999987654 47788887765432 2388999999998632 2 58999999
Q ss_pred HHHHHhhccCce-------eEeec----------C-------------C-------CCCccccccceEEEEEeCCC----
Q 042509 501 HDFAQFLSKNER-------FSIGV----------D-------------D-------PEESTSMEKLRHFMLVLGKS---- 539 (892)
Q Consensus 501 ~dl~~~~s~~e~-------~~~~~----------~-------------~-------~~~~~~~~~lr~L~l~~~~~---- 539 (892)
|++++.+++++. +.... . . ...+..+.+++.|.+..+..
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 999999876542 11100 0 0 00011344455555443321
Q ss_pred ---CCccccccCC-CcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchh
Q 042509 540 ---VAFPVSIFKA-RKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQE 614 (892)
Q Consensus 540 ---~~~p~~~~~~-~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 614 (892)
..+|..+..+ .+||.|.+.++ +..+|..+ ...+|++|++++|.+..+|..+..+++|++|+|++|..++.+|.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 1233333333 23555555543 44555554 34566666666666666666666666666666666555555553
Q ss_pred hhccccCCee-cccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhh-
Q 042509 615 IGKLVNLRYL-IYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDE- 692 (892)
Q Consensus 615 i~~l~~L~~L-~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~- 692 (892)
++.+++|++| +.+|+.+..+|..++++++|+.|++.++..... .|... .+..|+.| .+.++..+.....
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-Lp~~i-~l~sL~~L-------~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-LPTGI-NLKSLYRL-------NLSGCSRLKSFPDI 723 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-cCCcC-CCCCCCEE-------eCCCCCCccccccc
Confidence 5566666666 334445556666666666666666655432221 11111 22222222 2222211111000
Q ss_pred ---------------hhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 042509 693 ---------------AKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVF 757 (892)
Q Consensus 693 ---------------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 757 (892)
..+. ...+++|+.|.+..+.... ... ......+.....+++|+.|+|++|.....+
T Consensus 724 ~~nL~~L~L~~n~i~~lP~-~~~l~~L~~L~l~~~~~~~------l~~--~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPS-NLRLENLDELILCEMKSEK------LWE--RVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred cCCcCeeecCCCccccccc-cccccccccccccccchhh------ccc--cccccchhhhhccccchheeCCCCCCcccc
Confidence 0000 1123444444444322100 000 000000011123578999999998776668
Q ss_pred CchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceE-EEEeCCcccCCCCCCCCCCCCCCCccceeeccccccc
Q 042509 758 ENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMN-VKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEW 836 (892)
Q Consensus 758 p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l 836 (892)
|.+++++++|+.|+|++|...+.+|....+++|+.|+|++|. +..++. ..++|+.|.+.+. .+
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------------~~~nL~~L~Ls~n-~i 858 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------------ISTNISDLNLSRT-GI 858 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------------cccccCEeECCCC-CC
Confidence 999999999999999999877777775578999999999986 443321 2245555555442 33
Q ss_pred cccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCCCC
Q 042509 837 EEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCPTL 891 (892)
Q Consensus 837 ~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~~l 891 (892)
++++ ..+..+++|+.|++.+|++|+.+|..+..+++|+ +++++|++|
T Consensus 859 ~~iP--------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 859 EEVP--------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccCh--------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 3222 2334566777777777777777766666666676 777777654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.8e-44 Score=381.42 Aligned_cols=279 Identities=36% Similarity=0.615 Sum_probs=226.7
Q ss_pred chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 174 RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|++++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998854 368999999999999999999999977789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhccC-CceEeC
Q 042509 254 ETS---NLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMMES-TNVMFI 329 (892)
Q Consensus 254 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 329 (892)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567888999999999999999999999864 4888888888877789999999999999887665 679999
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhcccccc---ccc
Q 042509 330 EELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSELWKVE---EFE 406 (892)
Q Consensus 330 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 406 (892)
++|+++||++||.+.++... ....+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|..+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 22234456788999999999999999999999776677899998876544432 235
Q ss_pred cchhhHHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCC
Q 042509 407 NDLFGPLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKE 459 (892)
Q Consensus 407 ~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~ 459 (892)
..++.++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|+|||..++
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 67999999999999999999999999999999999999999999999998653
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4.2e-28 Score=254.18 Aligned_cols=320 Identities=23% Similarity=0.251 Sum_probs=251.6
Q ss_pred CCccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-c--cccChhhcCcCCcceEEcCCCCCCcccccccCCCCC
Q 042509 521 EESTSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-I--CEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNL 597 (892)
Q Consensus 521 ~~~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 597 (892)
.+++.+.++.||++.+|++..+-..+..++.||++.+..| + ..+|..|-++..|..||||+|.+++.|..+..-.++
T Consensus 49 eEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCc
Confidence 3444578899999999998888778888999999998875 2 358999999999999999999999999999999999
Q ss_pred CEEeccCcCCccccchh-hhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCC
Q 042509 598 QTLEMEDCCNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLR 676 (892)
Q Consensus 598 ~~L~L~~~~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 676 (892)
-+|+||+|+ +..+|.. +.+|..|-+|++++|.+..+|+.+..|.+|++|.+++|.+.. +.+.+|..++.|+
T Consensus 129 iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-------fQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 129 IVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-------FQLRQLPSMTSLS 200 (1255)
T ss_pred EEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-------HHHhcCccchhhh
Confidence 999999998 8889865 468899999999999999999999999999999999987653 3444444444333
Q ss_pred CceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCC
Q 042509 677 GFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAV 756 (892)
Q Consensus 677 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 756 (892)
.|. +.+...-....+.++..+.||..++++.|++ ..+|+.+..+++|+.|+|++|.++.
T Consensus 201 -vLh---ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L----------------p~vPecly~l~~LrrLNLS~N~ite- 259 (1255)
T KOG0444|consen 201 -VLH---MSNTQRTLDNIPTSLDDLHNLRDVDLSENNL----------------PIVPECLYKLRNLRRLNLSGNKITE- 259 (1255)
T ss_pred -hhh---cccccchhhcCCCchhhhhhhhhccccccCC----------------CcchHHHhhhhhhheeccCcCceee-
Confidence 333 2232222334456788889999999999988 5588889999999999999999988
Q ss_pred CCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccc-
Q 042509 757 FENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSE- 835 (892)
Q Consensus 757 ~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~- 835 (892)
+.-......+|++|+|+.|.....|..+.+|+.|+.|.+.+|.+..-+. +.+..+|..|......+
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi-------------PSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI-------------PSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC-------------ccchhhhhhhHHHHhhcc
Confidence 7766777789999999999766655569999999999999988654221 23444455444443322
Q ss_pred -ccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCCCC
Q 042509 836 -WEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCPTL 891 (892)
Q Consensus 836 -l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~~l 891 (892)
++- .++++..++.|++|.+..| .|-++|..+.-++-|+ |++.+.|+|
T Consensus 327 ~LEl--------VPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 327 KLEL--------VPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccc--------CchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCc
Confidence 222 4577778888999988766 7888998888888898 999888876
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=9.3e-24 Score=262.54 Aligned_cols=350 Identities=21% Similarity=0.210 Sum_probs=173.8
Q ss_pred cccceEEEEEeCCCC-CccccccCCCcceEEEecCCc--cccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSV-AFPVSIFKARKLRSLLIVGPI--CEIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~-~~p~~~~~~~~Lr~L~l~~~~--~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~ 601 (892)
++++++|++++|.+. .+|..+.++++|++|+++++. ..+|..++++.+|++|+|++|.+. .+|..++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 445555555554432 344444555555555554431 234444555555555555555544 4444455555555555
Q ss_pred ccCcCCccccchhhhccccCCeecccccccc-cccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccc-------
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLH-YLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLN------- 673 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~------- 673 (892)
+++|...+.+|..++++++|++|.++.|.+. .+|..+.++++|++|+++.|.... ..|.....+.+|+.|.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccC
Confidence 5555433444545555555555533333332 344444444555555544443332 1111112222222221
Q ss_pred -----------cCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhh---------hhhccHHHH
Q 042509 674 -----------HLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESME---------ENQANQGAI 733 (892)
Q Consensus 674 -----------~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~---------~~~~~~~~~ 733 (892)
+|+ .+.+.+.. .....+..+..+++|+.|++++|.+.+..+..... ..+.....+
T Consensus 322 ~~~~~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 322 GKIPVALTSLPRLQ-VLQLWSNK----FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CcCChhHhcCCCCC-EEECcCCC----CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 111 11111110 00111233455566666666666554322111000 000111233
Q ss_pred hhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCC-------
Q 042509 734 SEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGD------- 805 (892)
Q Consensus 734 ~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~------- 805 (892)
+..+..+++|+.|++++|.+++.+|..+..+++|+.|+|++|.+...++. +..+++|+.|++++|.+....+
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 476 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccccc
Confidence 44455566677777777766655666666777777777777666555444 5667777777777777543222
Q ss_pred -cccCCCCCCCCCCCC----CCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcc
Q 042509 806 -EFLGIKSNHSSGPAI----AFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTK 880 (892)
Q Consensus 806 -~~~~~~~n~~~~~~~----~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~ 880 (892)
+.+.++.|.+++..+ .+++|+.|.+.++. +.+..+..+..+++|+.|+|++|.-...+|..+..+++
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK--------LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCc--------ceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 223445555543321 23445555554421 11223445567889999999998544577888888899
Q ss_pred eE-EEEcCCC
Q 042509 881 LN-LNISLCP 889 (892)
Q Consensus 881 L~-L~i~~c~ 889 (892)
|+ |++++|.
T Consensus 549 L~~L~Ls~N~ 558 (968)
T PLN00113 549 LSQLDLSQNQ 558 (968)
T ss_pred CCEEECCCCc
Confidence 99 9998886
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=2.6e-23 Score=258.54 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=60.5
Q ss_pred cccceEEEEEeCCCC-CccccccCCCcceEEEecCCc--cccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSV-AFPVSIFKARKLRSLLIVGPI--CEIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~-~~p~~~~~~~~Lr~L~l~~~~--~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~ 601 (892)
..++++|++++|.+. .+|..+.++++|++|+++++. ..+|..++++++|++|+|++|.+. .+|..++++.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344445555444442 334444445555555554431 234444555555555555555443 3444455555555555
Q ss_pred ccCcCCccccchhhhccccCCeecccccccc-cccccccCCcCCCcCCceEecc
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLH-YLPRGIERLTCLRTLSEFVVSR 654 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~ 654 (892)
+++|.....+|..++++++|++|.+++|.+. .+|..++++++|++|++..|..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 5554433444555555555555533333332 3444445555555555544443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-23 Score=215.91 Aligned_cols=128 Identities=21% Similarity=0.245 Sum_probs=68.2
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEec
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEM 602 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 602 (892)
+.+++.+++..|.++.+|.......+|..|+|.+| +.++ .+.+..++.||.||||.|.|+.+|.. +..-.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 44555555555555555544444444555555554 2222 23345555566666666666655532 444456666666
Q ss_pred cCcCCcccc-chhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEecc
Q 042509 603 EDCCNLKRL-PQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSR 654 (892)
Q Consensus 603 ~~~~~~~~l-p~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 654 (892)
++|. ++.+ -..|..+.+|-.|-++.|.+..+|.. |.+|++|+.|++..|.+
T Consensus 181 a~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 181 ASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred cccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 6665 3332 23455555666665556666666543 44466666666665554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.1e-23 Score=221.14 Aligned_cols=320 Identities=18% Similarity=0.188 Sum_probs=243.4
Q ss_pred CCCccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCC--cccccccCCCC
Q 042509 520 PEESTSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIV--ELPETCCELFN 596 (892)
Q Consensus 520 ~~~~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~~L~~ 596 (892)
|.....++.++.|.+....+..+|..++.+.+|..|.+.+| +.++...+..++.||.+.++.|+++ .+|..|..|..
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 33344578899999999999999999999999999999875 6778888999999999999999987 79999999999
Q ss_pred CCEEeccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccC
Q 042509 597 LQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHL 675 (892)
Q Consensus 597 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 675 (892)
|.+||||.|+ +.+.|..+..-+++-.|++++|.|..+|.. +.+|+.|-.|+++.|.+.. .|.....+..|+.|
T Consensus 105 Lt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL--- 178 (1255)
T KOG0444|consen 105 LTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTL--- 178 (1255)
T ss_pred ceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhh---
Confidence 9999999998 899999999999999999999999999977 5789999999999998754 22222223333322
Q ss_pred CCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCC
Q 042509 676 RGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKA 755 (892)
Q Consensus 676 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 755 (892)
.+++. .+.......+-.+++|+.|.+++.+-+ ...+|.++..+.||..++++.|.+..
T Consensus 179 ----~Ls~N----PL~hfQLrQLPsmtsL~vLhms~TqRT--------------l~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 179 ----KLSNN----PLNHFQLRQLPSMTSLSVLHMSNTQRT--------------LDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred ----hcCCC----hhhHHHHhcCccchhhhhhhcccccch--------------hhcCCCchhhhhhhhhccccccCCCc
Confidence 21111 011111123445667777777765432 24567777778888888888888887
Q ss_pred CCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccc
Q 042509 756 VFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSE 835 (892)
Q Consensus 756 ~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~ 835 (892)
+|..+..+++|+.|+|++|.+.+.-...+...+|+.|+++.|.++.+|.... .+++|+.|...+ +.
T Consensus 237 -vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc------------KL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 237 -VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVC------------KLTKLTKLYANN-NK 302 (1255)
T ss_pred -chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHh------------hhHHHHHHHhcc-Cc
Confidence 8888888888888888888766554456667788888888888877764332 456676666544 12
Q ss_pred ccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCC
Q 042509 836 WEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLC 888 (892)
Q Consensus 836 l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c 888 (892)
+.--. .+.+++.+.+|+.+...+| +|.-+|+++..+..|+ |.++..
T Consensus 303 L~FeG------iPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 303 LTFEG------IPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred ccccC------CccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc
Confidence 21111 5577888999999999988 8999999999999999 887654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.4e-23 Score=210.09 Aligned_cols=218 Identities=22% Similarity=0.218 Sum_probs=131.0
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
...+..+..++|++..+|..+....+|+.|+++.+ ...+|++|+.+..|..|+..+|++..+|.++.++..|..|++.+
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence 44455555556666566656666666666655543 44566666666666666666666666666666666666666666
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|. +..+|+...+++.|++|+...|.++.+|+.++.|.+|..|++..|.+.. .| .+.+++.|+.|. ....
T Consensus 170 n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lP-ef~gcs~L~Elh-----~g~N-- 238 (565)
T KOG0472|consen 170 NK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LP-EFPGCSLLKELH-----VGEN-- 238 (565)
T ss_pred cc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--CC-CCCccHHHHHHH-----hccc--
Confidence 55 5555555555666666665556666666666666666666666665543 12 122333333221 0000
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
.......+..+++++|..|++..|++ .++|..+..+.+|+.|++++|.+++ +|..++++
T Consensus 239 ----~i~~lpae~~~~L~~l~vLDLRdNkl----------------ke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 239 ----QIEMLPAEHLKHLNSLLVLDLRDNKL----------------KEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred ----HHHhhHHHHhcccccceeeecccccc----------------ccCchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence 00011113455777888888888877 4567777777888888888888887 88888877
Q ss_pred cCCcEEEEeccC
Q 042509 765 NKLKKLFLINCY 776 (892)
Q Consensus 765 ~~L~~L~L~~~~ 776 (892)
+|+.|-+.+|+
T Consensus 298 -hL~~L~leGNP 308 (565)
T KOG0472|consen 298 -HLKFLALEGNP 308 (565)
T ss_pred -eeeehhhcCCc
Confidence 78888777774
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-22 Score=207.15 Aligned_cols=313 Identities=21% Similarity=0.202 Sum_probs=233.0
Q ss_pred cccceEEEEEeCCCCCcc-ccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 601 (892)
..++.+|++.+|.+.++. +.+..++.||+|+|+.| +..+|. ++..-.++++|+|++|.|+.+-. .|..|.+|-+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 667999999999998774 45778899999999987 556654 35666789999999999997764 488899999999
Q ss_pred ccCcCCccccch-hhhccccCCeecccccccccc-cccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCce
Q 042509 602 MEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYLHYL-PRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFL 679 (892)
Q Consensus 602 L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 679 (892)
|+.|+ ++.+|. .|.+|++|+.|++..|.+..+ -..|..|++|+.|.+..|.+.. .....+..+.+++.|+ |
T Consensus 204 LsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme~l~-----L 276 (873)
T KOG4194|consen 204 LSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKMEHLN-----L 276 (873)
T ss_pred cccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccceee-----c
Confidence 99999 777774 566799999999999988765 3458899999999999887754 2233355666666653 2
Q ss_pred EEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCc
Q 042509 680 AIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFEN 759 (892)
Q Consensus 680 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~ 759 (892)
....+..+. ...+.+++.|+.|+++.|.+. ..-++.....++|++|+|+.|.++..-+.
T Consensus 277 ~~N~l~~vn------~g~lfgLt~L~~L~lS~NaI~---------------rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 277 ETNRLQAVN------EGWLFGLTSLEQLDLSYNAIQ---------------RIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccchhhhhh------cccccccchhhhhccchhhhh---------------eeecchhhhcccceeEeccccccccCChh
Confidence 222222222 256788899999999999874 22345566788999999999999983455
Q ss_pred hhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCc-ccCCCCCCCCCCCCCCCccceeecccccccc
Q 042509 760 WIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDE-FLGIKSNHSSGPAIAFPKLKHLKFMKLSEWE 837 (892)
Q Consensus 760 ~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~-~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~ 837 (892)
.+..+..|+.|+|++|.+...-.. +..+.+|+.|+|++|.++..-.. ... ..++|+|++|.+.+ ++++
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~---------f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA---------FNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh---------hccchhhhheeecC-ceee
Confidence 677899999999999976654444 77889999999999997654322 111 23688999999887 4666
Q ss_pred ccccccccCcccccCcCCccceeeecccccCcCCC-cCCCCCcceE-EEE
Q 042509 838 EWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLP-NQLLQRTKLN-LNI 885 (892)
Q Consensus 838 ~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~l~~l~~L~-L~i 885 (892)
.++ ...+..+++|++|++.+|+ +.++. ..+..+ .|+ |.+
T Consensus 406 ~I~-------krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 406 SIP-------KRAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred ecc-------hhhhccCcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence 665 3445679999999999994 55553 344444 666 554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=7.5e-20 Score=227.16 Aligned_cols=301 Identities=21% Similarity=0.255 Sum_probs=222.8
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCC-CCcccccccCCCCCCEEecc
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAE-IVELPETCCELFNLQTLEME 603 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~ 603 (892)
+.++|.|.+.++.+..+|..+ .+.+|+.|++.++ +..+|..+..+++|++|+|+++. ++.+|. ++.+++|++|+++
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 567999999999999999765 6799999999885 67788889999999999999876 778874 7889999999999
Q ss_pred CcCCccccchhhhccccCCee-cccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccc----cCCCc
Q 042509 604 DCCNLKRLPQEIGKLVNLRYL-IYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLN----HLRGF 678 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l~~L~~L-~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~----~L~~~ 678 (892)
+|..+..+|..++++++|++| ..+|+.+..+|.++ ++++|+.|++++|.... ..|... .+|+.|. .+. .
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~-~~p~~~---~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK-SFPDIS---TNISWLDLDETAIE-E 739 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc-cccccc---CCcCeeecCCCccc-c
Confidence 999899999999999999999 55677888999877 78899999888775432 111111 1222210 000 0
Q ss_pred eEE-eccCCCCChhhh--------------hhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCC
Q 042509 679 LAI-VGLGNVKDVDEA--------------KNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNL 743 (892)
Q Consensus 679 l~i-~~l~~~~~~~~~--------------~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 743 (892)
++. ..+.++..+... ........++|+.|+|+.|... ..+|..+..+++|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l---------------~~lP~si~~L~~L 804 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL---------------VELPSSIQNLHKL 804 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc---------------cccChhhhCCCCC
Confidence 000 000111100000 0001123468999999988643 4467778889999
Q ss_pred CeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCC
Q 042509 744 ESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFP 823 (892)
Q Consensus 744 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~ 823 (892)
+.|+|++|...+.+|..+ .+++|+.|+|++|.....+|.+ .++|+.|+|++|.++.+|.. ...|+
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~s------------i~~l~ 869 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWW------------IEKFS 869 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHH------------HhcCC
Confidence 999999986554488766 7899999999999877666653 47899999999988876642 23688
Q ss_pred ccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCC
Q 042509 824 KLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLP 872 (892)
Q Consensus 824 ~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp 872 (892)
+|+.|.+.+|+++..++ . ....+++|+.|++++|++|+.++
T Consensus 870 ~L~~L~L~~C~~L~~l~------~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVS------L--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCEEECCCCCCcCccC------c--ccccccCCCeeecCCCccccccc
Confidence 99999999999888766 2 34478999999999999998654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=7.2e-22 Score=197.93 Aligned_cols=182 Identities=24% Similarity=0.287 Sum_probs=145.8
Q ss_pred CCCccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCC
Q 042509 520 PEESTSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQ 598 (892)
Q Consensus 520 ~~~~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 598 (892)
+..+.+...++++..+.|...++|++++.+-.|..|+..++ +.++|..++++..|..|++.+|+++.+|+..-+++.|+
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLK 186 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHH
Confidence 44455677899999999999999999999999998887764 88999999999999999999999999999877799999
Q ss_pred EEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCc
Q 042509 599 TLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGF 678 (892)
Q Consensus 599 ~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 678 (892)
.||...|- ++.+|+.++.+.+|..|.+..|++..+| +|..+..|.+|++..|.+.. .+.+ .+++|+.+. .
T Consensus 187 ~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae------~~~~L~~l~-v 256 (565)
T KOG0472|consen 187 HLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAE------HLKHLNSLL-V 256 (565)
T ss_pred hcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHH------Hhcccccce-e
Confidence 99998876 8999999999999999999999999999 79999999999998887653 1122 233333332 2
Q ss_pred eEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCc
Q 042509 679 LAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEE 716 (892)
Q Consensus 679 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 716 (892)
++.... .+ +..+..++.+.+|.+|++++|.+++
T Consensus 257 LDLRdN-kl----ke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 257 LDLRDN-KL----KEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred eecccc-cc----ccCchHHHHhhhhhhhcccCCcccc
Confidence 222211 11 1223456678899999999998864
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-19 Score=198.46 Aligned_cols=253 Identities=26% Similarity=0.246 Sum_probs=162.1
Q ss_pred ccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCc
Q 042509 527 EKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDC 605 (892)
Q Consensus 527 ~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 605 (892)
-++..|++++|.+..+|..+..+.+|+.|.++.+ +.++|.+++++.+|++|.|.+|.+..+|.++..+.+|++|++++|
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 3488999999999999999999999999999887 678899999999999999999999999999999999999999998
Q ss_pred CCccccchhhhccccCCeeccccc-cccccc-------------------ccccCCcCCCcCCceEeccCCCccCCCCCC
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDS-YLHYLP-------------------RGIERLTCLRTLSEFVVSRSGGKYGSKASN 665 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~-~l~~lp-------------------~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 665 (892)
. ...+|..+..+..+..+..++| .+..++ .++.+++. .|++..|.... .....
T Consensus 125 ~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~ 197 (1081)
T KOG0618|consen 125 H-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSN 197 (1081)
T ss_pred c-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhh
Confidence 8 7888888888888777755555 222221 22222222 24444443321 00112
Q ss_pred ccccccc----ccCCCceEEeccCCCCChhhhhhh--c---ccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhh
Q 042509 666 LEGLRHL----NHLRGFLAIVGLGNVKDVDEAKNA--E---LEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEA 736 (892)
Q Consensus 666 l~~L~~L----~~L~~~l~i~~l~~~~~~~~~~~~--~---l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (892)
+..|+.+ +++. .+.+.+.. +..+....+. . -..-.+|++++++.|++ ..++++
T Consensus 198 ~~~l~~l~c~rn~ls-~l~~~g~~-l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l----------------~~lp~w 259 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLS-ELEISGPS-LTALYADHNPLTTLDVHPVPLNLQYLDISHNNL----------------SNLPEW 259 (1081)
T ss_pred ccchhhhhhhhcccc-eEEecCcc-hheeeeccCcceeeccccccccceeeecchhhh----------------hcchHH
Confidence 2222222 1111 22222110 0000000000 0 01123555666655554 334555
Q ss_pred CCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC
Q 042509 737 LRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD 805 (892)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 805 (892)
+..+.+|+.+++..|.++. +|..+...++|+.|.+..|.....+|.++++.+|++|+|..|.|...++
T Consensus 260 i~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred HHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch
Confidence 6666666666666666655 6666666666666666666665666667889999999999998887765
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=2.2e-18 Score=190.78 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=59.9
Q ss_pred HhhhCCCCCCCCeEEEeeecCCCCCCch-hhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCC
Q 042509 733 ISEALRPPPNLESLEIWEYKGKAVFENW-IVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIK 811 (892)
Q Consensus 733 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 811 (892)
..+.+..+++|+.|+|++|.+.. +|.. +.+++.|+.|+|++|.....+..+..++.|+.|...+|.+...| ++
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~---- 448 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL---- 448 (1081)
T ss_pred chhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh----
Confidence 33445555666666666666555 5543 33566666666666655444444555666666666666555544 11
Q ss_pred CCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccC
Q 042509 812 SNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKL 868 (892)
Q Consensus 812 ~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L 868 (892)
..+|.|+.+++.. +++.... .++... -|+|+.|++++|+.+
T Consensus 449 --------~~l~qL~~lDlS~-N~L~~~~------l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 --------AQLPQLKVLDLSC-NNLSEVT------LPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred --------hhcCcceEEeccc-chhhhhh------hhhhCC-CcccceeeccCCccc
Confidence 1334444444432 3444433 222211 167777777777653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=6.3e-16 Score=177.68 Aligned_cols=252 Identities=17% Similarity=0.115 Sum_probs=148.4
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCc
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNL 608 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~ 608 (892)
..|+++.+.++.+|..+. .+|+.|.+.+| +..+|. .+++|++|+|++|.|+.+|.. ..+|+.|++++|. +
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-L 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-h
Confidence 345666666666666554 36677776654 555554 246677777777777777643 3567777777776 5
Q ss_pred cccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCC
Q 042509 609 KRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVK 688 (892)
Q Consensus 609 ~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~ 688 (892)
..+|.. ..+|+.|.++.|.+..+|.. +++|+.|++++|.+.. .|... ..|+.|. +.-..+..+.
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~--Lp~lp---~~L~~L~-----Ls~N~L~~LP 338 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS--LPALP---SELCKLW-----AYNNQLTSLP 338 (788)
T ss_pred hhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc--CCCCc---ccccccc-----cccCcccccc
Confidence 566552 24566666666677766652 3567777777665543 11111 1122221 0000000000
Q ss_pred ChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCc
Q 042509 689 DVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLK 768 (892)
Q Consensus 689 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 768 (892)
. + ..+|+.|+|++|++.. ++. .+++|+.|++++|.+.. +|.. +++|+
T Consensus 339 ~--------l--p~~Lq~LdLS~N~Ls~----------------LP~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~ 385 (788)
T PRK15387 339 T--------L--PSGLQELSVSDNQLAS----------------LPT---LPSELYKLWAYNNRLTS-LPAL---PSGLK 385 (788)
T ss_pred c--------c--ccccceEecCCCccCC----------------CCC---CCcccceehhhcccccc-Cccc---ccccc
Confidence 0 0 1468888888887742 222 13578888888888877 7754 35788
Q ss_pred EEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcc
Q 042509 769 KLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGK 848 (892)
Q Consensus 769 ~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~ 848 (892)
.|+|++|.+.. +|.+ .++|+.|++++|.++.++. .+.+|+.|.+.+ +++..+ +
T Consensus 386 ~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~LssIP~---------------l~~~L~~L~Ls~-NqLt~L--------P 438 (788)
T PRK15387 386 ELIVSGNRLTS-LPVL--PSELKELMVSGNRLTSLPM---------------LPSGLLSLSVYR-NQLTRL--------P 438 (788)
T ss_pred eEEecCCcccC-CCCc--ccCCCEEEccCCcCCCCCc---------------chhhhhhhhhcc-Cccccc--------C
Confidence 88888886654 3332 3578888888888766542 223566666655 233332 3
Q ss_pred cccCcCCccceeeecccc
Q 042509 849 EEITIMPQLNSLEIILCA 866 (892)
Q Consensus 849 ~~~~~lp~L~~L~i~~c~ 866 (892)
..+..+++|+.|++++|+
T Consensus 439 ~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hHHhhccCCCeEECCCCC
Confidence 345578888888888884
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.5e-17 Score=146.29 Aligned_cols=166 Identities=23% Similarity=0.258 Sum_probs=135.2
Q ss_pred cCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCC
Q 042509 569 ENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLS 648 (892)
Q Consensus 569 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~ 648 (892)
-++.+...|-||+|+++.+|..|..|.+|+.|++.+|+ ++++|.+++.+++|++|..+-|.+..+|.+|+.++.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 46778888999999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred ceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhc
Q 042509 649 EFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQA 728 (892)
Q Consensus 649 l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 728 (892)
+..|.......| ..+..++.|+.|.|+.|.+
T Consensus 109 ltynnl~e~~lp-----------------------------------gnff~m~tlralyl~dndf-------------- 139 (264)
T KOG0617|consen 109 LTYNNLNENSLP-----------------------------------GNFFYMTTLRALYLGDNDF-------------- 139 (264)
T ss_pred ccccccccccCC-----------------------------------cchhHHHHHHHHHhcCCCc--------------
Confidence 988876552111 1233445667777777765
Q ss_pred cHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCC
Q 042509 729 NQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKL 787 (892)
Q Consensus 729 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l 787 (892)
+.++.....+++|+.|.++.|.+.. +|..++.+..|++|++.+|...-.+|.++++
T Consensus 140 --e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 140 --EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred --ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 4566777778888888888888777 8888888888888888888766666655543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=2.6e-15 Score=174.08 Aligned_cols=225 Identities=17% Similarity=0.235 Sum_probs=129.3
Q ss_pred cceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcC
Q 042509 528 KLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 528 ~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 606 (892)
+...|.+.+++++.+|..+. ++|+.|++++| +..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 34566777777777775543 46777777765 556676554 477888888877777776553 367788888776
Q ss_pred CccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCC
Q 042509 607 NLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGN 686 (892)
Q Consensus 607 ~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~ 686 (892)
+..+|..+. .+|++|.+++|.+..+|..+. ++|+.|++++|.+.. .|... ...|..|. +.+. .
T Consensus 253 -L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~-------Ls~N-~ 315 (754)
T PRK15370 253 -ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT--LPAHL--PSGITHLN-------VQSN-S 315 (754)
T ss_pred -cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc--Ccccc--hhhHHHHH-------hcCC-c
Confidence 567776654 467777777777777776553 467777777665543 11000 01122111 0000 0
Q ss_pred CCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccC
Q 042509 687 VKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNK 766 (892)
Q Consensus 687 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~ 766 (892)
+..+ +..+ .++|+.|++++|.+. .++..+ +++|+.|++++|.+.. +|..+ .++
T Consensus 316 Lt~L----P~~l--~~sL~~L~Ls~N~Lt----------------~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~ 368 (754)
T PRK15370 316 LTAL----PETL--PPGLKTLEAGENALT----------------SLPASL--PPELQVLDVSKNQITV-LPETL--PPT 368 (754)
T ss_pred cccC----Cccc--cccceeccccCCccc----------------cCChhh--cCcccEEECCCCCCCc-CChhh--cCC
Confidence 0000 0001 145666677666653 123222 2567777777777665 66544 256
Q ss_pred CcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeC
Q 042509 767 LKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVG 804 (892)
Q Consensus 767 L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 804 (892)
|+.|+|++|.+...++.+. ++|+.|++++|.++.++
T Consensus 369 L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 369 ITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred cCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCc
Confidence 7777777776554443332 35667777776665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=6.9e-15 Score=170.51 Aligned_cols=226 Identities=19% Similarity=0.238 Sum_probs=167.3
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
++.++.|++++|++..+|..+. .+|++|+++++ +..+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 5689999999999999997665 58999999986 667887664 479999999999999998775 5899999998
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|. +..+|..+. ++|++|.+++|.+..+|..+. ++|+.|++++|.+.. .+... ...|+.|. +.++
T Consensus 272 N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~-------Ls~N 335 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL---PPGLKTLE-------AGEN 335 (754)
T ss_pred Cc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc---cccceecc-------ccCC
Confidence 87 778888664 589999888889998887653 478999999887764 11111 12333332 1111
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
. +..+ +..+ .++|+.|++++|++. .++..+ +++|+.|+|++|.++. +|..+.
T Consensus 336 ~-Lt~L----P~~l--~~sL~~L~Ls~N~L~----------------~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~-- 387 (754)
T PRK15370 336 A-LTSL----PASL--PPELQVLDVSKNQIT----------------VLPETL--PPTITTLDVSRNALTN-LPENLP-- 387 (754)
T ss_pred c-cccC----Chhh--cCcccEEECCCCCCC----------------cCChhh--cCCcCEEECCCCcCCC-CCHhHH--
Confidence 0 1111 1112 268999999999874 233333 3689999999999998 888764
Q ss_pred cCCcEEEEeccCCCCcCCC----CCCCCCCCeEEEcceEEE
Q 042509 765 NKLKKLFLINCYNCEIMPP----LGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 765 ~~L~~L~L~~~~~~~~~~~----l~~l~~L~~L~L~~~~l~ 801 (892)
.+|+.|++++|.+...+.. .+.+|++..|++.+|+++
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4799999999987654332 345689999999998865
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=2.8e-14 Score=164.22 Aligned_cols=234 Identities=17% Similarity=0.184 Sum_probs=165.3
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
..+++.|.+..|+++.+|. .+++|++|++++| +..+|.. ..+|++|++++|.++.+|..+ .+|+.|++++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcC
Confidence 4578999999999998884 3588999999986 6677753 468899999999999888643 5688999999
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|. +..+|.. +++|++|++++|.+..+|... .+|+.|++.+|.+.. .|. ....|+.| .+.+
T Consensus 292 N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~--LP~---lp~~Lq~L-------dLS~- 351 (788)
T PRK15387 292 NQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTS--LPT---LPSGLQEL-------SVSD- 351 (788)
T ss_pred Cc-ccccccc---ccccceeECCCCccccCCCCc---ccccccccccCcccc--ccc---cccccceE-------ecCC-
Confidence 87 7788863 578999988888888887633 357778888777654 121 11223333 2211
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
.++..+ + . ...+|+.|+++.|.+.. ++.. +.+|+.|++++|.++. +|.. .
T Consensus 352 N~Ls~L----P-~--lp~~L~~L~Ls~N~L~~----------------LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 352 NQLASL----P-T--LPSELYKLWAYNNRLTS----------------LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred CccCCC----C-C--CCcccceehhhcccccc----------------Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 111111 0 0 12578889999888742 3321 3579999999999988 8864 3
Q ss_pred cCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccc
Q 042509 765 NKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKL 833 (892)
Q Consensus 765 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l 833 (892)
++|+.|++++|.+.. +|.+ +.+|+.|++++|.++.+|..+. .+++|+.|.+.+.
T Consensus 402 s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt~LP~sl~------------~L~~L~~LdLs~N 455 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLTRLPESLI------------HLSSETTVNLEGN 455 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCcccccChHHh------------hccCCCeEECCCC
Confidence 689999999998765 4432 3578999999999988765422 4567777777663
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=1.6e-14 Score=170.21 Aligned_cols=316 Identities=24% Similarity=0.256 Sum_probs=192.8
Q ss_pred cccceEEEEEeCC--CCCcccc-ccCCCcceEEEecCC--ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGK--SVAFPVS-IFKARKLRSLLIVGP--ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~--~~~~p~~-~~~~~~Lr~L~l~~~--~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 600 (892)
.++++.|-+..|. +..++.. |..++.||+|+++++ ..++|+.|++|.|||||+|+++.|+.+|.++.+|..|++|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4579999999986 5666654 566999999999986 5689999999999999999999999999999999999999
Q ss_pred eccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceE
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLA 680 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 680 (892)
|+..+.....+|..+..|++||+|.+.......-...++.+.+|++|........+. .....+..+..|..+...+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhh
Confidence 999988777777777789999999444332221112244555555555544433321 00111111122211111122
Q ss_pred EeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch
Q 042509 681 IVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENW 760 (892)
Q Consensus 681 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 760 (892)
+.+ .........+..+.+|+.|.+..+......- .......... .++++..+.+.++.... .+.|
T Consensus 701 ~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~------~~~~~~~~~~---~f~~l~~~~~~~~~~~r-~l~~ 765 (889)
T KOG4658|consen 701 IEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVI------EWEESLIVLL---CFPNLSKVSILNCHMLR-DLTW 765 (889)
T ss_pred hcc-----cccceeecccccccCcceEEEEcCCCchhhc------ccccccchhh---hHHHHHHHHhhcccccc-ccch
Confidence 111 1112223567778899999998887642000 0000000000 13456666666666665 6777
Q ss_pred hhhccCCcEEEEeccCCCCcC-CCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccccc
Q 042509 761 IVSLNKLKKLFLINCYNCEIM-PPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEW 839 (892)
Q Consensus 761 ~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~ 839 (892)
....++|+.|.+..|...+.+ |....+..+..+.+..+.+.... ...+ .++||++..+.+.... +++|
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~-~~~~---------l~~l~~i~~~~l~~~~-l~~~ 834 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR-MLCS---------LGGLPQLYWLPLSFLK-LEEL 834 (889)
T ss_pred hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce-eeec---------CCCCceeEecccCccc-hhhe
Confidence 777889999999988766544 44666666666544444332221 0001 3456666555555443 5555
Q ss_pred ccccccCcccccCcCCccceeeeccc-ccCcCCCcC
Q 042509 840 DFGITRSGKEEITIMPQLNSLEIILC-AKLKSLPNQ 874 (892)
Q Consensus 840 ~~~~~~~~~~~~~~lp~L~~L~i~~c-~~L~~lp~~ 874 (892)
... .......||.+.++.+.+| +++..+|..
T Consensus 835 ~ve----~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 835 IVE----ECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ehh----cCcccccCccccccceeccccceeecCCc
Confidence 411 1112346777878888776 667677764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-15 Score=134.91 Aligned_cols=129 Identities=24% Similarity=0.301 Sum_probs=90.1
Q ss_pred ccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEecc
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEME 603 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 603 (892)
.++.+.+|.+++|++..+|+.+..+.+|++|+++++ ++++|.+|+.+++||.|++.-|.+..+|..|+.++-|++|||.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 356777788888887777777777777777777765 6677777777777777777777777777777777777777777
Q ss_pred CcCCc-cccchhhhccccCCeecccccccccccccccCCcCCCcCCceEec
Q 042509 604 DCCNL-KRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 604 ~~~~~-~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 653 (892)
+|+.. ..+|..|-.+..|+-|.++.|..+.+|..+++|++||.|.+..|.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 66532 346666666667777766666667777777777777766655443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-14 Score=145.17 Aligned_cols=261 Identities=17% Similarity=0.106 Sum_probs=151.8
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCC-CCCCccccc-ccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSK-AEIVELPET-CCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~L 600 (892)
+.....+.+..|.++.+|+ .|..+++||.|+|+.| +..| |+.|.++..|-.|-+.+ |+|+.+|+. |++|..||-|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 6677788888888888875 3667788888888875 4444 67777777776665555 668888765 7778888888
Q ss_pred eccCcCCccccchhhhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCce
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFL 679 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 679 (892)
.+.-|.......+.+..|++|..|.+..|.+..++. .+..+.+++++.+-.|..-. ..+++-+..-...- .+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~a~~-~i 218 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDLAMN-PI 218 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhHHhhc-hh
Confidence 887777444445667788888888777777777776 47777777777766554321 11221111100000 01
Q ss_pred EEeccCCCCChhhhhh--hcccC---CCCCCeE----EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEee
Q 042509 680 AIVGLGNVKDVDEAKN--AELEK---KKNLFRL----ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWE 750 (892)
Q Consensus 680 ~i~~l~~~~~~~~~~~--~~l~~---~~~L~~L----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (892)
...+...+........ ..+.. ...++.+ ...++... ..-...+..+++|++|++++
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~---------------~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS---------------ICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC---------------cChHHHHhhcccceEeccCC
Confidence 1111110000000000 00000 0001111 00000000 00112356678888888888
Q ss_pred ecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCccc
Q 042509 751 YKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFL 808 (892)
Q Consensus 751 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~ 808 (892)
|.++.+-+.||..+..++.|.|..|.+...-.. +..+.+|+.|+|.+|.|+.+.+..|
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 888876677777888888888887765443333 6677788888888888877765433
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.2e-11 Score=151.27 Aligned_cols=292 Identities=14% Similarity=0.172 Sum_probs=179.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i 247 (892)
..+|-|+.-.+.+ ... ...+++.|+|++|.||||++.++... ++.++|+++.. ..+.......+
T Consensus 14 ~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 3456666444444 322 24689999999999999999998752 23699999964 44666666777
Q ss_pred HHhccCCCCC-------------CCCHHHHHHHHHHHhc--CCeEEEEEecCCCCCcCChhh-hhhhcCCCCCCcEEEEE
Q 042509 248 IEGLEGETSN-------------LGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDDRTKWEP-LNHCLMNGQCGSKILVT 311 (892)
Q Consensus 248 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~~~~~~~-l~~~l~~~~~gs~iivT 311 (892)
+..+...... ..+.......+...+. +.+++|||||++..+...... +...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7766421111 0222333444444443 678999999997654344333 33334444566788899
Q ss_pred cCchh---HHhhccCCceEeCC----CCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhcc
Q 042509 312 TRKET---VSRMMESTNVMFIE----ELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCF 384 (892)
Q Consensus 312 tr~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~ 384 (892)
||... ............+. +|+.+|+.++|.......- -.+...+|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99742 11111112345555 9999999999986542211 1445678999999999999998877654
Q ss_pred CCC-HHHHHHhhhhccccccc-cccchhhHHH-hhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCc
Q 042509 385 KRT-EEEWQSILDSELWKVEE-FENDLFGPLL-MSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENK 461 (892)
Q Consensus 385 ~~~-~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 461 (892)
... .... . +.... ....+...+. -.++.||++.+..+...|+++ .|+.+-+ ..+...
T Consensus 232 ~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~------~~l~~~---- 291 (903)
T PRK04841 232 NNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALI------VRVTGE---- 291 (903)
T ss_pred CCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHH------HHHcCC----
Confidence 321 1110 0 11111 1123444433 348899999999999999997 3443221 111111
Q ss_pred hHHHHHHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHHHhhc
Q 042509 462 EMEIIGDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQFLS 508 (892)
Q Consensus 462 ~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s 508 (892)
+-+...+++|...+++..... +....|.+|++++++.....
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 123668999999999753211 11235788999999997653
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=1.6e-10 Score=128.45 Aligned_cols=318 Identities=13% Similarity=0.103 Sum_probs=183.4
Q ss_pred cccCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHH
Q 042509 164 SFIDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 164 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 243 (892)
+...+..++||+++++++...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...+
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 334566899999999999999854321 123456789999999999999999985322221234677777777788899
Q ss_pred HHHHHHhccCCC--CCCCCHHHHHHHHHHHhc--CCeEEEEEecCCCCC----cCChhhhhhhcCCCCCCcE--EEEEcC
Q 042509 244 AKSIIEGLEGET--SNLGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDD----RTKWEPLNHCLMNGQCGSK--ILVTTR 313 (892)
Q Consensus 244 ~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~----~~~~~~l~~~l~~~~~gs~--iivTtr 313 (892)
+..+++++.... ....+.++....+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 999999987522 223456677777777774 556899999996532 1122223222222 12333 566665
Q ss_pred chhHHhhcc-------CCceEeCCCCCHHHHHHHHHHHhhCCC--CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhc-
Q 042509 314 KETVSRMME-------STNVMFIEELSESECWRLFQQLAFFGR--SPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLC- 383 (892)
Q Consensus 314 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~- 383 (892)
...+..... ....+.+.+++.++..+++...+.... .......++.+++......|..+.|+.++-.+..
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 543322211 124678999999999999988763221 1112222333333333334556777766543221
Q ss_pred ---c-C--CCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCC-CC-CcccchHHHHHH--HHHcC
Q 042509 384 ---F-K--RTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVF-PK-DWDIKKDELIKL--WMAQG 453 (892)
Q Consensus 384 ---~-~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--w~a~g 453 (892)
. . -+.+....+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 1 2445555544432 11223446789999887766655432 21 133555555432 33322
Q ss_pred CccCCCCchHHHHHHHHHHHHHhccCcccccc--cCCCceeeEEec
Q 042509 454 YITPKENKEMEIIGDEYFDYLATRSFFQDFVK--HGVNTVRKCKMH 497 (892)
Q Consensus 454 ~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~~h 497 (892)
+-.... + ......|+.+|...+++..... +..|+.+.++.+
T Consensus 332 ~~~~~~--~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 332 LGYEPR--T-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred cCCCcC--c-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 211111 1 1223559999999999986432 223445555444
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.9e-13 Score=138.01 Aligned_cols=295 Identities=18% Similarity=0.199 Sum_probs=165.2
Q ss_pred eCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcCCccccc
Q 042509 536 LGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCCNLKRLP 612 (892)
Q Consensus 536 ~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp 612 (892)
..+++++|..+. +.-..+.|..| +..+|+ .|+.+++||.||||+|.|+.+ |..|..|.+|.+|-+.+++.++.+|
T Consensus 55 ~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 345677775553 34456666655 777775 578999999999999999854 6779999998888887755588888
Q ss_pred h-hhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCc-eEEeccCCCCC
Q 042509 613 Q-EIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGF-LAIVGLGNVKD 689 (892)
Q Consensus 613 ~-~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-l~i~~l~~~~~ 689 (892)
. .|++|..|+.|.++-|.+..++.+ +..|++|..|.++.|.... ........+..++.+..-.+. +...++....+
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhh
Confidence 5 478899999998888888877655 7889999999998887654 112122233333333211111 11111111111
Q ss_pred hhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCc-hhhhccCCc
Q 042509 690 VDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFEN-WIVSLNKLK 768 (892)
Q Consensus 690 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~-~~~~l~~L~ 768 (892)
........++.........+...++ +......+...+..++ ..+. +.+......|. .|..+++|+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri-----------~q~~a~kf~c~~esl~--s~~~-~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRI-----------NQEDARKFLCSLESLP--SRLS-SEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHh-----------cccchhhhhhhHHhHH--Hhhc-cccCcCCcChHHHHhhcccce
Confidence 1001111111111111111111111 0111111111111100 0111 12222222342 366889999
Q ss_pred EEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCc
Q 042509 769 KLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSG 847 (892)
Q Consensus 769 ~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~ 847 (892)
+|+|++|.+...-+. +..+..++.|.|..|.|..+...+|. ++..|+.|.+.+- ++..+ .
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~-----------~ls~L~tL~L~~N-~it~~-------~ 338 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ-----------GLSGLKTLSLYDN-QITTV-------A 338 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh-----------ccccceeeeecCC-eeEEE-------e
Confidence 999999987766554 88889999999999988776654432 4455666655551 22222 2
Q ss_pred ccccCcCCccceeeecccc
Q 042509 848 KEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 848 ~~~~~~lp~L~~L~i~~c~ 866 (892)
+..+..+.+|.+|.+-.||
T Consensus 339 ~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cccccccceeeeeehccCc
Confidence 2334455666667666554
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=5.9e-10 Score=116.95 Aligned_cols=182 Identities=18% Similarity=0.111 Sum_probs=117.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA---- 271 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---- 271 (892)
.+++.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++..|...++.+.. ..+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999985321 111 22333 33346778899999988865432 23333333333332
Q ss_pred -hcCCeEEEEEecCCCCCcCChhhhhhhcCC---CCCCcEEEEEcCchhHHhhcc----------CCceEeCCCCCHHHH
Q 042509 272 -IAKKKFLLVLDDVWNDDRTKWEPLNHCLMN---GQCGSKILVTTRKETVSRMME----------STNVMFIEELSESEC 337 (892)
Q Consensus 272 -l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 337 (892)
..+++.++|+||+|..+...++.+...... ......|++|.... ....+. ....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999987665566665532221 12233456666543 221111 134678999999999
Q ss_pred HHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 338 WRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 338 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
.+++...+..........-..+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332211112235778899999999999999988876
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=3.8e-09 Score=116.18 Aligned_cols=304 Identities=12% Similarity=0.098 Sum_probs=173.8
Q ss_pred cCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh-ccc---ceeEEEEeCCCCCHH
Q 042509 166 IDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR-NHF---KIRMWVCVSDPFDEF 241 (892)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~s~~~~~~ 241 (892)
..+..++||++++++|..++..... ......+.|+|++|+|||++++.+++..... ... -..+|+.+....+..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 3455799999999999999864221 1234578999999999999999999842111 111 146788887777888
Q ss_pred HHHHHHHHhcc---CCC-CCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCCcC---Chhhhhhhc-CCCC--CCcEEE
Q 042509 242 SVAKSIIEGLE---GET-SNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDDRT---KWEPLNHCL-MNGQ--CGSKIL 309 (892)
Q Consensus 242 ~~~~~i~~~l~---~~~-~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~---~~~~l~~~l-~~~~--~gs~ii 309 (892)
.++..|++++. ... ....+..+....+.+.+ .+++++||||+++.-... ....+.... .... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 99999999884 221 12234555666666666 366889999999653111 112222211 0111 223344
Q ss_pred EEcCchhHHhhc-----cC--CceEeCCCCCHHHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 042509 310 VTTRKETVSRMM-----ES--TNVMFIEELSESECWRLFQQLAFFG-RSPSECENLEEIGRKIVHKCKGLPLAAKTIGSL 381 (892)
Q Consensus 310 vTtr~~~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 381 (892)
.+|........+ .. ...+.+.+++.++..+++..++... ......++..+...+++..+.|.|..+..+...
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555433221111 11 2468899999999999999876421 111122333345556777778988544332221
Q ss_pred -h----cc---CCCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCCC--CCcccchHHHHHHHH-
Q 042509 382 -L----CF---KRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFP--KDWDIKKDELIKLWM- 450 (892)
Q Consensus 382 -l----~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~w~- 450 (892)
. .. .-+.+....+.+.. -.....-++..||.+.|..+..+...- .+-.+....+...+-
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 12333333333321 012234466788888886666554221 334466666665332
Q ss_pred -HcCCccCCCCchHHHHHHHHHHHHHhccCccccc
Q 042509 451 -AQGYITPKENKEMEIIGDEYFDYLATRSFFQDFV 484 (892)
Q Consensus 451 -a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 484 (892)
++.+ .... ........|+..|...+++....
T Consensus 320 ~~~~~-~~~~--~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-GVDP--LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-CCCC--CcHHHHHHHHHHHHhcCCeEEEE
Confidence 2211 1111 12455677899999999998653
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=1.3e-12 Score=141.22 Aligned_cols=92 Identities=21% Similarity=0.098 Sum_probs=42.8
Q ss_pred CCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh-h----ccCCcEEEEec
Q 042509 700 KKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV-S----LNKLKKLFLIN 774 (892)
Q Consensus 700 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-~----l~~L~~L~L~~ 774 (892)
..++|+.|++++|.+.+. ....+...+..+++|+.|++++|.+...-+..+. . .+.|++|++++
T Consensus 191 ~~~~L~~L~L~~n~i~~~-----------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDE-----------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred hCCCCCEEeccCCccChH-----------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 345666666666654310 0122333444456666666666655431111111 1 24566666666
Q ss_pred cCCCC----c-CCCCCCCCCCCeEEEcceEEEE
Q 042509 775 CYNCE----I-MPPLGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 775 ~~~~~----~-~~~l~~l~~L~~L~L~~~~l~~ 802 (892)
|.+.. . ...+..+++|++|++++|.++.
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 54431 0 1113344566666666655443
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=6.2e-11 Score=121.77 Aligned_cols=194 Identities=20% Similarity=0.144 Sum_probs=101.1
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH---
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI--- 247 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--- 247 (892)
|+||++++++|.+++.... .+.+.|+|+.|+|||+|++++.+. .+..-..++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~-~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN-ESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh-hhHHHHHHHH
Confidence 7899999999999887542 467999999999999999999983 322222445554433332 2222222
Q ss_pred -----------HHhccCCCC------CCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCC------cCChhhhhhhcCC-
Q 042509 248 -----------IEGLEGETS------NLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDD------RTKWEPLNHCLMN- 301 (892)
Q Consensus 248 -----------~~~l~~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~------~~~~~~l~~~l~~- 301 (892)
...+..... ...........+.+.+ .+++.+||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 1112233334444444 2445999999995432 0111123333322
Q ss_pred --CCCCcEEEEEcCchhHHhh--------ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 302 --GQCGSKILVTTRKETVSRM--------MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 302 --~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
..+.+.|+++|. ...... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+
T Consensus 152 ~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 333444444444 333322 2334569999999999999999865333 111 12245568999999999
Q ss_pred hHHHHH
Q 042509 372 PLAAKT 377 (892)
Q Consensus 372 Plai~~ 377 (892)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=3.8e-10 Score=121.13 Aligned_cols=276 Identities=16% Similarity=0.159 Sum_probs=147.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+|+|+++.++.+..++..... .......+.|+|++|+||||||+.+++. ....+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 4699999999999887754211 1123567889999999999999999984 33222 122221 112222233333
Q ss_pred HhccCCCC-CCCCH----HHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhcc-
Q 042509 249 EGLEGETS-NLGSL----QSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMME- 322 (892)
Q Consensus 249 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 322 (892)
..+..... -.++. ....+.+...+.+.+..+|+|+..+.. . +...+ .+.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~---~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--S---IRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--c---eeecC---CCceEEeecCCcccCCHHHHH
Confidence 33321110 00011 112223344445555555555543211 1 10011 12445666777544333221
Q ss_pred C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhcccc
Q 042509 323 S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSELWK 401 (892)
Q Consensus 323 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~ 401 (892)
. ...+++.+++.++..+++.+.+...... --.+....|++.|+|.|-.+..+...+ ..|....... .
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--V 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--C
Confidence 1 2468999999999999999877543222 124568899999999996555544432 1222211110 0
Q ss_pred cc-ccccchhhHHHhhhcCChHhHHHHHh-hhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHHHHHHHH-HHHhcc
Q 042509 402 VE-EFENDLFGPLLMSFNDLPSRIKRCFT-FCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEIIGDEYFD-YLATRS 478 (892)
Q Consensus 402 ~~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~~ 478 (892)
.. ..-......+...+..|++..+..+. ....|+.+ .+..+.+-... .. ..+.++..++ .|++.+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-----~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-----ERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-----CcchHHHHhhHHHHHcC
Confidence 00 00112334456678888887777664 66777665 45544442222 11 1223444455 789999
Q ss_pred Ccccc
Q 042509 479 FFQDF 483 (892)
Q Consensus 479 ll~~~ 483 (892)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99743
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.5e-12 Score=135.90 Aligned_cols=193 Identities=26% Similarity=0.294 Sum_probs=153.7
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
.......+++.|...++|..+..+-.|..+.+..| +..+|..++++..|.||+|+.|.++.+|..++.|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 55666788899999999988888888988888876 77899999999999999999999999999998886 99999998
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|+ ++.+|..++.+..|.+|+.++|.+..+|..++.+.+|+.|.+..|.... ..
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--------lp------------------ 205 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--------LP------------------ 205 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--------CC------------------
Confidence 88 8999999999999999988899999999999999999999877775532 00
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh--
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV-- 762 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-- 762 (892)
..+.. =.|..|++++|++ ..+|-.+..+..|++|-|.+|++.. -|..+.
T Consensus 206 -----------~El~~-LpLi~lDfScNki----------------s~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~k 256 (722)
T KOG0532|consen 206 -----------EELCS-LPLIRLDFSCNKI----------------SYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEK 256 (722)
T ss_pred -----------HHHhC-CceeeeecccCce----------------eecchhhhhhhhheeeeeccCCCCC-ChHHHHhc
Confidence 11111 2477888888887 3467778888899999999998876 555544
Q ss_pred -hccCCcEEEEecc
Q 042509 763 -SLNKLKKLFLINC 775 (892)
Q Consensus 763 -~l~~L~~L~L~~~ 775 (892)
...=-++|+..-|
T Consensus 257 GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 257 GKVHIFKYLSTQAC 270 (722)
T ss_pred cceeeeeeecchhc
Confidence 2223456666666
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.6e-09 Score=115.74 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=146.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+|||+++.++.+..++..... .......+.++|++|+|||+||+.+++. ....+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHH
Confidence 3699999999999988864321 1123456889999999999999999883 33222 122221111111 222223
Q ss_pred HhccCCCC-CCCCH----HHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhc-c
Q 042509 249 EGLEGETS-NLGSL----QSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMM-E 322 (892)
Q Consensus 249 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-~ 322 (892)
..+....- -.++. ......+...+.+.+..+|+|+..+. ..|. ..+ .+.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ecC---CCeEEEEecCCccccCHHHHh
Confidence 33322110 00000 12233455555556666666665322 1111 111 1245566677765443321 1
Q ss_pred C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHh--hhhcc
Q 042509 323 S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSI--LDSEL 399 (892)
Q Consensus 323 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~--~~~~~ 399 (892)
. ...+++.+++.++..+++.+.+...... --.+....|++.|+|.|..+..++..+ |... .+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1 2467899999999999999877533221 124567789999999997665554432 1111 11000
Q ss_pred ccccccccchhhHHHhhhcCChHhHHHHHh-hhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHHHHHHHH-HHHhc
Q 042509 400 WKVEEFENDLFGPLLMSFNDLPSRIKRCFT-FCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEIIGDEYFD-YLATR 477 (892)
Q Consensus 400 ~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~ 477 (892)
-.. ..-......+...|..++++.+..+. ....++.+ .+..+.+-... .. ....++..++ .|+++
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~-----~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE-----DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC-----CcchHHHhhhHHHHHc
Confidence 000 00011222356678889888777665 55666543 34433322111 11 1234556677 69999
Q ss_pred cCccc
Q 042509 478 SFFQD 482 (892)
Q Consensus 478 ~ll~~ 482 (892)
+|+..
T Consensus 284 ~li~~ 288 (305)
T TIGR00635 284 GFLQR 288 (305)
T ss_pred CCccc
Confidence 99974
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=7.9e-12 Score=135.12 Aligned_cols=259 Identities=19% Similarity=0.107 Sum_probs=156.6
Q ss_pred cccceEEEEEeCCCC-----CccccccCCCcceEEEecCCcc--------ccChhhcCcCCcceEEcCCCCCC-cccccc
Q 042509 526 MEKLRHFMLVLGKSV-----AFPVSIFKARKLRSLLIVGPIC--------EIPKEIENFMYLRFLKLSKAEIV-ELPETC 591 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~-----~~p~~~~~~~~Lr~L~l~~~~~--------~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i 591 (892)
...++.+.+.++.+. .++..+...+.++.|.+.++.. .++..+.++.+|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 445777888877762 3455566677788888876421 23455777888999999988876 444455
Q ss_pred cCCCC---CCEEeccCcCCcc----ccchhhhcc-ccCCeecccccccc-----cccccccCCcCCCcCCceEeccCCCc
Q 042509 592 CELFN---LQTLEMEDCCNLK----RLPQEIGKL-VNLRYLIYNDSYLH-----YLPRGIERLTCLRTLSEFVVSRSGGK 658 (892)
Q Consensus 592 ~~L~~---L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~ 658 (892)
..+.+ |++|++++|.... .++..+..+ ++|+.|.+++|.+. .++..+..+++|++|++..|......
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55544 9999998887331 234455666 88888877666655 33445667778888888877665311
Q ss_pred cCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhC-
Q 042509 659 YGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEAL- 737 (892)
Q Consensus 659 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 737 (892)
.+..... +..+..|+ .+.+.++.-...........+..+++|+.|++++|.+... ....+...+
T Consensus 182 ~~~l~~~---l~~~~~L~-~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-----------~~~~l~~~~~ 246 (319)
T cd00116 182 IRALAEG---LKANCNLE-VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-----------GAAALASALL 246 (319)
T ss_pred HHHHHHH---HHhCCCCC-EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-----------HHHHHHHHHh
Confidence 1111111 22122333 3443333211111122334567789999999999987521 001122222
Q ss_pred CCCCCCCeEEEeeecCCCC----CCchhhhccCCcEEEEeccCCCCc----CC-CCCCC-CCCCeEEEcceE
Q 042509 738 RPPPNLESLEIWEYKGKAV----FENWIVSLNKLKKLFLINCYNCEI----MP-PLGKL-PFLESLKIRNMN 799 (892)
Q Consensus 738 ~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~----~~-~l~~l-~~L~~L~L~~~~ 799 (892)
.+.+.|++|++++|.++.. ++..+..+++|+.|++++|..... .. .+... +.|+.|++.+|+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2457899999999987621 233344668999999999976643 22 13333 678888776653
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.06 E-value=7.3e-09 Score=116.15 Aligned_cols=291 Identities=18% Similarity=0.210 Sum_probs=184.4
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETS 256 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~ 256 (892)
..++.+.|.... +.+.+.|..++|.|||||+.+.+. +.. .=..+.|.+..+ +.++...+.-++..+..-.+
T Consensus 24 R~rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 345555565443 589999999999999999999875 222 224699999876 45677777777777753221
Q ss_pred -------------CCCCHHHHHHHHHHHhc--CCeEEEEEecCCCCCcCChh-hhhhhcCCCCCCcEEEEEcCchh---H
Q 042509 257 -------------NLGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDDRTKWE-PLNHCLMNGQCGSKILVTTRKET---V 317 (892)
Q Consensus 257 -------------~~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~~~~~~-~l~~~l~~~~~gs~iivTtr~~~---v 317 (892)
...++..+...+...+. .++..+||||.+-....... .+...+.....+-..|||||... +
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 12344445555555443 56899999998754333333 34445556677889999999863 2
Q ss_pred HhhccCCceEeCC----CCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHH
Q 042509 318 SRMMESTNVMFIE----ELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQS 393 (892)
Q Consensus 318 ~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~ 393 (892)
++.--.....++. .++.+|+.++|.......- -+.-...+.+..+|-+-|+..++-.++.+.+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 3221112233332 5899999999987541111 1344678999999999999999988884444333222
Q ss_pred hhhhccccccccccchhh-HHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHHHHHHHH
Q 042509 394 ILDSELWKVEEFENDLFG-PLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEIIGDEYFD 472 (892)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~ 472 (892)
.+. +....+.. ...=-++.||+++|..++-||+++.= . ..|+..- . -++-+...++
T Consensus 249 ~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L---------t---g~~ng~amLe 305 (894)
T COG2909 249 GLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL---------T---GEENGQAMLE 305 (894)
T ss_pred hcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH---------h---cCCcHHHHHH
Confidence 221 00111111 12335789999999999999999641 1 1222111 1 1233566899
Q ss_pred HHHhccCcccccccCCCceeeEEecHHHHHHHHhhcc
Q 042509 473 YLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQFLSK 509 (892)
Q Consensus 473 ~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s~ 509 (892)
+|..++|+-..-. +....|+.|.++.+|...-.+
T Consensus 306 ~L~~~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 306 ELERRGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHhCCCceeeec---CCCceeehhHHHHHHHHhhhc
Confidence 9999999864222 223479999999999865443
No 35
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.3e-09 Score=103.42 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=89.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcc----cceeEEEEeCCCCCHH---HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNH----FKIRMWVCVSDPFDEF---SVAKSIIEGLEGETSNLGSLQSYLLRIY 269 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 269 (892)
+++.|+|.+|+||||++++++..-..... +...+|++.+...... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47999999999999999999985322222 4566777776544433 33334433332211 11111 111
Q ss_pred HH-hcCCeEEEEEecCCCCCcC-------Chhhhh-hhcCC-CCCCcEEEEEcCchhH---HhhccCCceEeCCCCCHHH
Q 042509 270 EA-IAKKKFLLVLDDVWNDDRT-------KWEPLN-HCLMN-GQCGSKILVTTRKETV---SRMMESTNVMFIEELSESE 336 (892)
Q Consensus 270 ~~-l~~kr~LlVlDd~w~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 336 (892)
.. .+.++++||+|+++..... .+..+. ..++. ..++.++|||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999643221 122222 33333 3568999999998765 3444555689999999999
Q ss_pred HHHHHHHHh
Q 042509 337 CWRLFQQLA 345 (892)
Q Consensus 337 ~~~lf~~~~ 345 (892)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998753
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=2.5e-08 Score=100.78 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=98.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
.+.+.|+|.+|+|||+|++.+++. .......+.|+.+... .....+ +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 357899999999999999999984 3333445677765321 000011 111222 2
Q ss_pred eEEEEEecCCCCC-cCChhh-hhhhcCCC-CCCcEEE-EEcCc---------hhHHhhccCCceEeCCCCCHHHHHHHHH
Q 042509 276 KFLLVLDDVWNDD-RTKWEP-LNHCLMNG-QCGSKIL-VTTRK---------ETVSRMMESTNVMFIEELSESECWRLFQ 342 (892)
Q Consensus 276 r~LlVlDd~w~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 342 (892)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +++...+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998632 235553 33333321 2355554 45543 3566666667799999999999999999
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 042509 343 QLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSL 381 (892)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 381 (892)
+.+....-. --+++.+-|++++.|..-.+..+-..
T Consensus 172 ~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 172 RNAYQRGIE----LSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 988644321 12567788999999887766554433
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=2.9e-11 Score=128.01 Aligned_cols=212 Identities=22% Similarity=0.202 Sum_probs=163.5
Q ss_pred EEEEEeCCCCCccccccC--CCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCC
Q 042509 531 HFMLVLGKSVAFPVSIFK--ARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCN 607 (892)
Q Consensus 531 ~L~l~~~~~~~~p~~~~~--~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 607 (892)
++.|++-...++|-.-.+ +.--...+++.| +..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-
Confidence 345555556666533222 223334555554 6788999999999999999999999999999999999999999998
Q ss_pred ccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCC
Q 042509 608 LKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNV 687 (892)
Q Consensus 608 ~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~ 687 (892)
+..+|..+..|+ |+.|++++|+++.+|.+++.+..|..|+.+.|.+.. -.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s--------lp--------------------- 182 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS--------LP--------------------- 182 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh--------ch---------------------
Confidence 889999999887 999999999999999999988899999988776543 11
Q ss_pred CChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCC
Q 042509 688 KDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKL 767 (892)
Q Consensus 688 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L 767 (892)
..++.+.+|+.|.+..|++ ..+++.+..+ .|..|++++|++.. +|-.|..|.+|
T Consensus 183 --------sql~~l~slr~l~vrRn~l----------------~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m~~L 236 (722)
T KOG0532|consen 183 --------SQLGYLTSLRDLNVRRNHL----------------EDLPEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHL 236 (722)
T ss_pred --------HHhhhHHHHHHHHHhhhhh----------------hhCCHHHhCC-ceeeeecccCceee-cchhhhhhhhh
Confidence 2244455667777777765 4567777643 58999999999998 99999999999
Q ss_pred cEEEEeccCCCCcCCCC---CCCCCCCeEEEcceE
Q 042509 768 KKLFLINCYNCEIMPPL---GKLPFLESLKIRNMN 799 (892)
Q Consensus 768 ~~L~L~~~~~~~~~~~l---~~l~~L~~L~L~~~~ 799 (892)
+.|-|.+|.+...+..+ |...=.++|+..-|.
T Consensus 237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999876655443 445556777777763
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.5e-10 Score=115.65 Aligned_cols=215 Identities=20% Similarity=0.161 Sum_probs=136.3
Q ss_pred hhhcCcCCcceEEcCCCCCCcccc--cccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcC
Q 042509 566 KEIENFMYLRFLKLSKAEIVELPE--TCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTC 643 (892)
Q Consensus 566 ~~i~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~ 643 (892)
..-.++++|+...|.++.+...+. ....|++++.|||+.|- +... ..+-.-+..|++
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw--------------------~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNW--------------------FPVLKIAEQLPS 173 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhH--------------------HHHHHHHHhccc
Confidence 334567778888888777776553 45667777777777765 2211 011112345666
Q ss_pred CCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhh
Q 042509 644 LRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESM 723 (892)
Q Consensus 644 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 723 (892)
|+.|+++.|.+.... .+. . -..+++|+.|.|+.|+++.
T Consensus 174 Le~LNls~Nrl~~~~--------~s~-----~----------------------~~~l~~lK~L~l~~CGls~------- 211 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFI--------SSN-----T----------------------TLLLSHLKQLVLNSCGLSW------- 211 (505)
T ss_pred chhcccccccccCCc--------ccc-----c----------------------hhhhhhhheEEeccCCCCH-------
Confidence 777776666553300 000 0 0023678888888888763
Q ss_pred hhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcC--CCCCCCCCCCeEEEcceEEE
Q 042509 724 EENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIM--PPLGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 724 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~--~~l~~l~~L~~L~L~~~~l~ 801 (892)
..+...+..+|+|+.|++.+|...........-++.|+.|+|++|.+.+.. +..+.+|.|+.|+++.|.+.
T Consensus 212 -------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 212 -------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred -------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 455555666788999999888532212223335778999999988776554 55888999999999988877
Q ss_pred EeCC---cccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeeccc
Q 042509 802 KVGD---EFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILC 865 (892)
Q Consensus 802 ~~~~---~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c 865 (892)
++.. +..+. ...||+|++|.+.. ++..+|. ....+..+++|+.|.+..+
T Consensus 285 si~~~d~~s~~k--------t~~f~kL~~L~i~~-N~I~~w~------sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 285 SIAEPDVESLDK--------THTFPKLEYLNISE-NNIRDWR------SLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhcCCCccchhh--------hcccccceeeeccc-Ccccccc------ccchhhccchhhhhhcccc
Confidence 6532 11111 24789999998876 4666676 4445557788888887666
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=9.9e-08 Score=113.77 Aligned_cols=312 Identities=15% Similarity=0.140 Sum_probs=177.1
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeC---CC---CCHHHHH
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVS---DP---FDEFSVA 244 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~---~~~~~~~ 244 (892)
++||+.+++.|...+..... +...++.+.|..|||||+|++.|.. .+.+.+...+--.+. .+ ....+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 78999999999999876543 4567999999999999999999988 343332211111111 11 1222344
Q ss_pred HHHHHhccCCCC------------------------------------C-----CCCHHH-----HHHHHHHHh-cCCeE
Q 042509 245 KSIIEGLEGETS------------------------------------N-----LGSLQS-----YLLRIYEAI-AKKKF 277 (892)
Q Consensus 245 ~~i~~~l~~~~~------------------------------------~-----~~~~~~-----~~~~l~~~l-~~kr~ 277 (892)
+++..++..... . ....+. .+..+.-.. +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 555444411100 0 000011 111222222 46699
Q ss_pred EEEEecCCCCCcCChhhhhhhcCCCC---C-CcEE--EEEcCch--hHHhhccCCceEeCCCCCHHHHHHHHHHHhhCCC
Q 042509 278 LLVLDDVWNDDRTKWEPLNHCLMNGQ---C-GSKI--LVTTRKE--TVSRMMESTNVMFIEELSESECWRLFQQLAFFGR 349 (892)
Q Consensus 278 LlVlDd~w~~~~~~~~~l~~~l~~~~---~-gs~i--ivTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 349 (892)
++|+||+.+.|....+-+........ . -..| +.|.+.. .+...-.+...+.|.||+..+...+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 99999997666666555444333321 0 1122 2333322 2222223457899999999999999988653222
Q ss_pred CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccC------CCHHHHHHhhhhccccccccccchhhHHHhhhcCChHh
Q 042509 350 SPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFK------RTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSR 423 (892)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 423 (892)
. ...+....|+++..|+|+-+.-+-..+... .+...|..-..+. ........+...+..-.+.||..
T Consensus 237 ~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 L-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred c-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHH
Confidence 2 234567789999999999999988888764 2333333221110 01111122455688899999999
Q ss_pred HHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHHHHHHHHHHHhccCcccccccCCC---cee-eEEecHH
Q 042509 424 IKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEIIGDEYFDYLATRSFFQDFVKHGVN---TVR-KCKMHDV 499 (892)
Q Consensus 424 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~---~~~-~~~~hdl 499 (892)
.|..+...|++-.. |+.+.|-..|-. .....+....+.|....++-..+....+ ... |--.||.
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 99999999999654 455555544421 2334445445555544444321111111 111 2246777
Q ss_pred HHHHHHh
Q 042509 500 IHDFAQF 506 (892)
Q Consensus 500 v~dl~~~ 506 (892)
+++.+-.
T Consensus 378 vqqaaY~ 384 (849)
T COG3899 378 VQQAAYN 384 (849)
T ss_pred HHHHHhc
Confidence 7777643
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=9.9e-08 Score=107.95 Aligned_cols=214 Identities=11% Similarity=0.055 Sum_probs=126.0
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh---hcccc--eeEEEEeCCCCCHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV---RNHFK--IRMWVCVSDPFDEF 241 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~s~~~~~~ 241 (892)
.|+.+.||++++++|...|...-. +.....++.|+|.+|.|||+.++.|.+.... +.... .+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 356789999999999998865322 1123467889999999999999999874211 11112 36778877777889
Q ss_pred HHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhc---CCeEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEE--EcCc
Q 042509 242 SVAKSIIEGLEGETS-NLGSLQSYLLRIYEAIA---KKKFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILV--TTRK 314 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~ 314 (892)
.++..|.+++.+..+ ...........+...+. +...+||||+++.-....-+.|...+.. ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 999999998854332 22333345555555542 2346899999954221111223322221 223555444 3332
Q ss_pred h--------hHHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 315 E--------TVSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 315 ~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
- .+...++ ...+...|++.++..+++..++......-....++-+|+.++...|-.-.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 1222222 22467799999999999999875432222223344444444444444555655554443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=3.4e-09 Score=117.99 Aligned_cols=121 Identities=29% Similarity=0.303 Sum_probs=81.8
Q ss_pred EEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcC-CcceEEcCCCCCCcccccccCCCCCCEEeccCcCCcc
Q 042509 532 FMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFM-YLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLK 609 (892)
Q Consensus 532 L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~ 609 (892)
+....+.....+..+...+.+..|.+.++ +.++|...+.+. +|++|++++|.+..+|..+..+++|+.|++++|. +.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hh
Confidence 44444444222334445566777776664 666777666664 7777777777777777777777777777777777 67
Q ss_pred ccchhhhccccCCeecccccccccccccccCCcCCCcCCceEec
Q 042509 610 RLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 610 ~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 653 (892)
.+|...+.+++|+.|.++.|.+..+|..+..+..|++|.+..|.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 77776667777777777777777777766666667777766663
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.1e-09 Score=106.81 Aligned_cols=138 Identities=20% Similarity=0.154 Sum_probs=93.0
Q ss_pred hcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcC
Q 042509 568 IENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTL 647 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L 647 (892)
+.....|..||||+|.|+.+-+++.-++.++.|+++.|. +..+- .+..|++|++|++++|.+..+-..-.+|.+.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 344566777788887777777777777778888887776 44443 3677777777777777666554333455666666
Q ss_pred CceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhh
Q 042509 648 SEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQ 727 (892)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 727 (892)
.+..|.+.+ + +.+.++-+|..|+++.|++..
T Consensus 358 ~La~N~iE~---------L-----------------------------SGL~KLYSLvnLDl~~N~Ie~----------- 388 (490)
T KOG1259|consen 358 KLAQNKIET---------L-----------------------------SGLRKLYSLVNLDLSSNQIEE----------- 388 (490)
T ss_pred ehhhhhHhh---------h-----------------------------hhhHhhhhheeccccccchhh-----------
Confidence 655553321 1 224455678888888888742
Q ss_pred ccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch
Q 042509 728 ANQGAISEALRPPPNLESLEIWEYKGKAVFENW 760 (892)
Q Consensus 728 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 760 (892)
.+-...++++|+|+.+.|.+|++.+ +|..
T Consensus 389 ---ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY 417 (490)
T KOG1259|consen 389 ---LDEVNHIGNLPCLETLRLTGNPLAG-SVDY 417 (490)
T ss_pred ---HHHhcccccccHHHHHhhcCCCccc-cchH
Confidence 2234567889999999999999888 7764
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=2.6e-07 Score=95.36 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=104.1
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
..+++|-+..+.++++ . +++.-...||++|+||||||+.+.. .....| ..++...+-..-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 3345555544444433 2 3467788999999999999999988 344444 2333322222222222
Q ss_pred HHhccCCCCCCCCHHHHHHHHH-HHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE--EcCchh---HHhhc
Q 042509 248 IEGLEGETSNLGSLQSYLLRIY-EAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV--TTRKET---VSRMM 321 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~---v~~~~ 321 (892)
++ .-+ ....|++.++++|.|+.-+..+-+.+. |.-..|.-|+| ||-++. .....
T Consensus 93 ~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 22 221 223589999999999876666655554 44445776666 555543 12234
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCC-C-CCch-HHHHHHHHHHhcCCchHHH
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSP-S-ECEN-LEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~-~~~~-~~~~~~~i~~~c~G~Plai 375 (892)
+...++.+++|+.++..+++.+.+...... . .... -++....|++.++|--.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 557899999999999999999844322211 1 1111 2345667888898866543
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.73 E-value=2e-07 Score=103.26 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=106.6
Q ss_pred CceecchhhHHH---HHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNK---LIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
+++||.+..+.. +..++... ....+.++|++|+||||||+.+++. .... |+.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 358888877655 66666443 3456888999999999999999883 3222 222222111111112
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE--EcCchh--H-Hh
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV--TTRKET--V-SR 319 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v-~~ 319 (892)
.++ ...... ..+++.+|++|++|.-.....+.+...+.. |..+++ ||.+.. + ..
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 222211 246788999999987655555666655543 444444 344332 1 12
Q ss_pred hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 042509 320 MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGS 380 (892)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 380 (892)
..+....+.+.+++.++.+.++.+.+....... ..-..+..+.|++.|+|.|..+.-+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 233456899999999999999988653211100 012245677899999999976654433
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=8.7e-09 Score=114.67 Aligned_cols=102 Identities=25% Similarity=0.241 Sum_probs=84.6
Q ss_pred EEEecCCcc-ccChhhcCcCCcceEEcCCCCCCcccccccCCC-CCCEEeccCcCCccccchhhhccccCCeeccccccc
Q 042509 554 SLLIVGPIC-EIPKEIENFMYLRFLKLSKAEIVELPETCCELF-NLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYL 631 (892)
Q Consensus 554 ~L~l~~~~~-~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l 631 (892)
.+.+..+-. ..+..+..+..+..|++.++.++.+|.....+. +|+.|++++|. +..+|..++.+++|+.|.++.|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchh
Confidence 455554422 445556677889999999999999999888885 99999999988 888888899999999999899999
Q ss_pred ccccccccCCcCCCcCCceEeccCC
Q 042509 632 HYLPRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 632 ~~lp~~i~~L~~L~~L~l~~~~~~~ 656 (892)
..+|...+.+++|+.|++.+|....
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCcccc
Confidence 9999887788999999988887654
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.1e-07 Score=94.73 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=102.2
Q ss_pred chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 174 RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
.+..++.+.+++... ....+.|+|.+|+|||+||+.+++. ........+|++++...+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 345667777765432 3468999999999999999999984 333334456666543211 00
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcC-Ch-hhhhhhcCC-CCCCcEEEEEcCchh---------HHhhc
Q 042509 254 ETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRT-KW-EPLNHCLMN-GQCGSKILVTTRKET---------VSRMM 321 (892)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 321 (892)
..+.+.+++ .-+||+||++.-... .| +.+...+.. ...+..||+||+... +...+
T Consensus 82 ------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 011112222 238999999654322 23 334444332 123447888887532 22223
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSL 381 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 381 (892)
.....+++.++++++...++.+.+...... --.+..+.|++.+.|.|..+.-+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334679999999999999998765322211 12455677888899999876665433
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=8.8e-07 Score=100.18 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=117.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+.-.-...++ +..+......+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 368999999999999987543 245677999999999999988777321111000 01111112222221
Q ss_pred Hh-----ccCCCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH
Q 042509 249 EG-----LEGETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS 318 (892)
Q Consensus 249 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 318 (892)
.. +.........+++....+... ..++.-++|||+++.-+...|..++..+.......++|+||.+. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000111222222222211 13455689999998777677888888887766677877777654 332
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
...+.+..++++.++.++..+.+.+.+..+.... -.+....|++.++|... |+..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234467899999999999999988764332211 24556789999999664 55443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.6e-07 Score=97.76 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|.+..++.+...+.... -.+.+.++|+.|+||||+|+.+.+.-.-..... ..++......+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999999887543 246789999999999999999987321100000 00111111111111
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhH
Q 042509 249 EGLEG-----ETSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETV 317 (892)
Q Consensus 249 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 317 (892)
..... ........++. ..+.+.+ .+++-++|+|++..-....++.+...+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 11000 00000112221 1222221 245669999999766555677788777766667777776654 333
Q ss_pred Hhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 318 SRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 318 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
... .+....+++.+++.++..+.+.+.+...+... -.+.++.|++.++|.|..+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 322 23356899999999999998887664432211 245567899999998864433
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=5.2e-07 Score=96.27 Aligned_cols=179 Identities=15% Similarity=0.179 Sum_probs=119.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC----hhhhcccceeEEEEe-CCCCCHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND----PDVRNHFKIRMWVCV-SDPFDEFSV 243 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-s~~~~~~~~ 243 (892)
.+++|-+..++.+..++.... -.+...++|+.|+||||+|+.+++. .....|.|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999986543 3567889999999999999888872 112345665555442 22222222
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHH--hhc
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVS--RMM 321 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~--~~~ 321 (892)
.+++.+.+...+ ..+++-++|+|+++..+...+..+...+.....++.+|++|.+.+.. +..
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 222222221111 23556678888886666778899999999888899888888654321 122
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
+....+++.++++++....+.+... .. -.+.++.++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~-~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN-DI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc-CC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 3467899999999999888866431 11 133466789999999875543
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.5e-09 Score=107.84 Aligned_cols=211 Identities=19% Similarity=0.128 Sum_probs=132.8
Q ss_pred cccceEEEEEeCCCCCccc--cccCCCcceEEEecCCc----cccChhhcCcCCcceEEcCCCCCCccccc--ccCCCCC
Q 042509 526 MEKLRHFMLVLGKSVAFPV--SIFKARKLRSLLIVGPI----CEIPKEIENFMYLRFLKLSKAEIVELPET--CCELFNL 597 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~--~~~~~~~Lr~L~l~~~~----~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L 597 (892)
.+++|.+++.++.....+. ....|+++|.|+++.++ ..+......|++|+.|+|+.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 6788899998887766553 56789999999999864 33445567899999999999987744333 2357899
Q ss_pred CEEeccCcCCc-cccchhhhccccCCeeccccc-ccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccC
Q 042509 598 QTLEMEDCCNL-KRLPQEIGKLVNLRYLIYNDS-YLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHL 675 (892)
Q Consensus 598 ~~L~L~~~~~~-~~lp~~i~~l~~L~~L~~~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 675 (892)
+.|.|+.|... ..+-.....+|+|+.|.+..| .+..-......+..|++|++++|.+...... .....|+.|++|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQL 276 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhh
Confidence 99999999843 233344557899999966665 3322222344577899999999887652211 222333333333
Q ss_pred CCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCC
Q 042509 676 RGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKA 755 (892)
Q Consensus 676 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 755 (892)
. +...+++.+...+.........+++|++|.+..|++.. ......+..+++|+.|.+.+|++..
T Consensus 277 n--ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~--------------w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 N--LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD--------------WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred h--ccccCcchhcCCCccchhhhcccccceeeecccCcccc--------------ccccchhhccchhhhhhcccccccc
Confidence 1 23333333332222222234456788888888877632 2223445556777777777777654
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=3.7e-08 Score=90.64 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=80.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcc-----cceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-----FKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 269 (892)
+.+++.|+|.+|+|||++++++.+. .... -..++|+.+....+...+...|++++........+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 3578999999999999999999984 2221 34577999988889999999999999887665566777778888
Q ss_pred HHhcCC-eEEEEEecCCCC-CcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 270 EAIAKK-KFLLVLDDVWND-DRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 270 ~~l~~k-r~LlVlDd~w~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
+.+... ..+||+|+++.- +...++.+.... + ..+.+||++.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 887544 469999999543 333334443333 3 567778877765
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-09 Score=106.53 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=57.8
Q ss_pred ccccceEEEEEeCCCC-----CccccccCCCcceEEEecCC-----ccccCh-------hhcCcCCcceEEcCCCCCC-c
Q 042509 525 SMEKLRHFMLVLGKSV-----AFPVSIFKARKLRSLLIVGP-----ICEIPK-------EIENFMYLRFLKLSKAEIV-E 586 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~-----~~p~~~~~~~~Lr~L~l~~~-----~~~lp~-------~i~~l~~L~~L~L~~~~i~-~ 586 (892)
...++..+.+++|.+. .+.+.+.+.+.||..+++.- ...+|+ .+-.+++|++|+||.|-+. .
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3678889999998764 24456667778888887762 223443 3556778999999998876 2
Q ss_pred ----ccccccCCCCCCEEeccCcC
Q 042509 587 ----LPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 587 ----lp~~i~~L~~L~~L~L~~~~ 606 (892)
+-+-+..+++|+.|.|.+|.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC
Confidence 22346678889999998886
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=4.4e-07 Score=104.70 Aligned_cols=194 Identities=15% Similarity=0.203 Sum_probs=117.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.++||-+..++.|.+++.... -.+.+.++|..|+||||+|+.+++.-.-...... ..+.....-..|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHh
Confidence 368999999999999887543 2456689999999999999999884211100000 0000001111111
Q ss_pred Hh-------ccCCC-CCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH
Q 042509 249 EG-------LEGET-SNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS 318 (892)
Q Consensus 249 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 318 (892)
.. +.... ....++.++...+.. -..+++-++|||+++......++.|+..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 10 00000 001112222222221 12467789999999877777888888888776666666665544 4443
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
.....+..+++++++.++..+++.+.+-..... .-.+....|++.++|.|.-+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223446789999999999999998866432211 12456778999999988754444
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=2e-08 Score=95.06 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=44.5
Q ss_pred cccceEEEEEeCCCCCcccccc-CCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccc-cCCCCCCEEec
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIF-KARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETC-CELFNLQTLEM 602 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~-~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L 602 (892)
+.++|.|++.+|.+..+. .+. .+.+|++|++++| +.++ +.+..+++|+.|++++|.|+.+++.+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 456777888888777664 344 4677777887776 4444 34667777888888888777776554 35777888888
Q ss_pred cCcCCccccc--hhhhccccCCeecccccccccccc----cccCCcCCCcCCceEe
Q 042509 603 EDCCNLKRLP--QEIGKLVNLRYLIYNDSYLHYLPR----GIERLTCLRTLSEFVV 652 (892)
Q Consensus 603 ~~~~~~~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~L~~L~~L~l~~~ 652 (892)
++|. +..+- ..+..+++|++|.+.+|.+...+. -+..+++|+.||....
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 7776 43321 345667777777666666654442 2566777777776544
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=2.8e-07 Score=88.90 Aligned_cols=181 Identities=22% Similarity=0.244 Sum_probs=97.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++|||-++-+..+.-++..... ..+...-+..+|++|+||||||+-+.+ .....|. +++...-....+ +..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d-l~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD-LAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH-HHHHH
Confidence 5799999888876554432110 123577899999999999999999999 4554442 222211001111 11222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC--------CC-----------CcEEE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG--------QC-----------GSKIL 309 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~--------~~-----------gs~ii 309 (892)
.. + +++-++++|+++.-+..+-+.+..++.++ ++ =+-|=
T Consensus 97 ~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 22 2 23446777888765544444444444332 11 12344
Q ss_pred EEcCchhHHhhccC-Cc-eEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 310 VTTRKETVSRMMES-TN-VMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 310 vTtr~~~v~~~~~~-~~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
-|||...+...+.. .. ..+++..+.+|-.++..+.+..-.- +--++.+.+|+++|.|-|--+.-+-...
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 57887665544433 22 4579999999999999886643222 2336778999999999997665554443
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=5.9e-07 Score=100.50 Aligned_cols=194 Identities=14% Similarity=0.143 Sum_probs=118.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+. +. +.-++. ...+......+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~--Ln----C~~~~~-~~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKC--LN----CETGVT-STPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hC----CCcCCC-CCCCccCHHHHHHh
Confidence 368999999999999997553 2578899999999999999988773 11 100111 01111111222221
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHH----HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH
Q 042509 249 EGLEG-----ETSNLGSLQSYLLRIYE----AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS 318 (892)
Q Consensus 249 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 318 (892)
..-.. ........++....+.. -..+++-++|+|+++.-+...+..+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 11000 00011122222222211 123667799999998766667777888777766677777777653 222
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
...+....+++++++.++..+.+.+.+....... -.+....|++.++|.+..+..+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2234567899999999999999988764433222 2455678999999988654433
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2.1e-08 Score=94.85 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=39.9
Q ss_pred eCCCCCccccccCCCcceEEEecCCccccChhhc-CcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchh
Q 042509 536 LGKSVAFPVSIFKARKLRSLLIVGPICEIPKEIE-NFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQE 614 (892)
Q Consensus 536 ~~~~~~~p~~~~~~~~Lr~L~l~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 614 (892)
.+.+...| .+.++.++|.|++.++.-...+.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. ++.++..
T Consensus 6 ~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIA-QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccc-ccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 34444444 4456678899999986333335566 5788999999999999885 57789999999999988 7777665
Q ss_pred h-hccccCCeecccccccccccc--cccCCcCCCcCCceEeccC
Q 042509 615 I-GKLVNLRYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 615 i-~~l~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~ 655 (892)
+ ..+++|++|.+++|.+..+.. .+..+++|+.|++.+|...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6 468999999888888876532 3566778888887777654
No 58
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.7e-06 Score=90.17 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=121.2
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccc-e-eEEEEeCCCCCHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFK-I-RMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~-~~wv~~s~~~~~~~~~~ 245 (892)
+..+.+|+.+++++...|...-. .....-+.|+|.+|.|||+.++.|++ +++.... . +++|++-...+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34589999999999988865432 12233499999999999999999999 4444432 2 78999999999999999
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCCcCChhhhhhhcCCCCC-CcEE--EEEcCchhHHhh
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQC-GSKI--LVTTRKETVSRM 320 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~-gs~i--ivTtr~~~v~~~ 320 (892)
.|++++...+.......+....+.+.+ .++.++||||++..-....-+.+...+..... .++| |..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 999999755555566777777888777 46889999999954221111334343333222 3443 334443332222
Q ss_pred --------ccCCceEeCCCCCHHHHHHHHHHHhhC
Q 042509 321 --------MESTNVMFIEELSESECWRLFQQLAFF 347 (892)
Q Consensus 321 --------~~~~~~~~l~~L~~~~~~~lf~~~~~~ 347 (892)
++.. .+...|.+.+|-..++..++-.
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHh
Confidence 2333 3789999999999999887743
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=5.8e-06 Score=93.60 Aligned_cols=247 Identities=15% Similarity=0.130 Sum_probs=141.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|.+..++.+.+|+..... ....+.+.|+|++|+||||+|+.+++. .. |+ .+-++.+...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHH
Confidence 4699999999999999865321 112678999999999999999999984 21 22 3334444432222 233333
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhc-CCeEEEEEecCCCCCc----CChhhhhhhcCCCCCCcEEEEEcCch-hHHh--h
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIA-KKKFLLVLDDVWNDDR----TKWEPLNHCLMNGQCGSKILVTTRKE-TVSR--M 320 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDd~w~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~--~ 320 (892)
....... .+. .++-+||+|+++.-.. ..+..+...+... +..||+|+.+. .... .
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 2221110 011 3677999999965322 2345555555432 33466666432 2211 1
Q ss_pred ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccC---CCHHHHHHhhhh
Q 042509 321 MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFK---RTEEEWQSILDS 397 (892)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~---~~~~~w~~~~~~ 397 (892)
-.....+++.+++.++....+.+.+....... -.+....|++.++|....+......+... -+.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i----~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC----DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 13356789999999999999888765433222 14567889999999877655443333322 13333333321
Q ss_pred ccccccccccchhhHHHhhhc-CChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCC
Q 042509 398 ELWKVEEFENDLFGPLLMSFN-DLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPK 458 (892)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 458 (892)
.+...+++.++..-+. .-+......+..+. ++- ..+-.|+.+.+....
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 1123456676665554 33333333332222 222 357799999997653
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.7e-07 Score=104.84 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=115.1
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
+++|-+..++.|..++.... -.+.+.++|++|+||||+|+.+++...-.+.+....|.|.+-. .+..-...-+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 58999999999988887643 2467799999999999999998874221122222223221100 00000000000
Q ss_pred hccCCCCCCCCHHH---HHHHHHH-HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcC-chhHHhh-ccC
Q 042509 250 GLEGETSNLGSLQS---YLLRIYE-AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTR-KETVSRM-MES 323 (892)
Q Consensus 250 ~l~~~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~ 323 (892)
.+... .....+. +...+.. -..+++-++|+|+++......+..+...+......+.+|++|. ...+... .+.
T Consensus 89 el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 11110 1111222 2121111 1235667999999987666677888888776655655555554 3333322 234
Q ss_pred CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 324 TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
...+++.+++.++....+.+.+...+... -.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 56899999999999999998775433221 2456788999999988644
No 61
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.57 E-value=1.6e-05 Score=91.89 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=122.0
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCC---CCCHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSD---PFDEFSV 243 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~---~~~~~~~ 243 (892)
+++|++..+..+.+.+.... ...+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPF------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcCC------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 68999999999888775332 4579999999999999999998754332222 1234554432 1122222
Q ss_pred HHHH---------------HHhccCCC----------------CCCCC-HHHHHHHHHHHhcCCeEEEEEecCCCCCcCC
Q 042509 244 AKSI---------------IEGLEGET----------------SNLGS-LQSYLLRIYEAIAKKKFLLVLDDVWNDDRTK 291 (892)
Q Consensus 244 ~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~ 291 (892)
...+ +...+... ++... ....+..+.+.++++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111000 01111 1235778888999999999988888777778
Q ss_pred hhhhhhhcCCCCCCcEEEE--EcCchh-HHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHh
Q 042509 292 WEPLNHCLMNGQCGSKILV--TTRKET-VSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHK 367 (892)
Q Consensus 292 ~~~l~~~l~~~~~gs~iiv--Ttr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 367 (892)
|+.+...+....+...|++ ||++.. +... .+....+.+.+++.+|.++++.+.+-.... .. -.++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHC
Confidence 8888777776665555555 566432 1111 123447789999999999999987642211 11 13444555555
Q ss_pred cCCchHHHHHHhhh
Q 042509 368 CKGLPLAAKTIGSL 381 (892)
Q Consensus 368 c~G~Plai~~~~~~ 381 (892)
+..-+-|+..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54445566555544
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.3e-06 Score=97.96 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=115.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh-------------------ccccee
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR-------------------NHFKIR 229 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 229 (892)
++++|-+..++.+...+.... -.+.+.++|+.|+||||+|+.+++.-.-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999999887543 24668899999999999999988721100 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEE
Q 042509 230 MWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKI 308 (892)
Q Consensus 230 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~i 308 (892)
+++.......+ .+..++...+... ..+++-++|+|+++.-+...++.+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1122222222211 2466779999999776666778888888776666665
Q ss_pred EE-EcCchhHH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHh
Q 042509 309 LV-TTRKETVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTIG 379 (892)
Q Consensus 309 iv-Ttr~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 379 (892)
|+ ||....+. ...+....+++++++.++....+.+.+...+... -.+....|++.++|.+. |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54 54443333 2234467899999999999888887653322111 24456779999999764 444443
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=3.8e-09 Score=106.08 Aligned_cols=256 Identities=17% Similarity=0.090 Sum_probs=124.1
Q ss_pred hcCcCCcceEEcCCCCCC-----cccccccCCCCCCEEeccCcC---Cccccchh-------hhccccCCeecccccccc
Q 042509 568 IENFMYLRFLKLSKAEIV-----ELPETCCELFNLQTLEMEDCC---NLKRLPQE-------IGKLVNLRYLIYNDSYLH 632 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~---~~~~lp~~-------i~~l~~L~~L~~~~~~l~ 632 (892)
+..+..+.+|+|++|.+. .+.+.+.+.++|+.-++++-. ...++|+. +-.+++|++|+++.|-++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 334455556666666554 233334445555555555421 01223332 234456666655555443
Q ss_pred c-ccc----cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 633 Y-LPR----GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 633 ~-lp~----~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
. -++ -+..++.|++|.+.+|++....-...+..+..|... ......+.|+.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~-----------------------kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN-----------------------KKAASKPKLRVF 162 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH-----------------------hccCCCcceEEE
Confidence 1 111 144567777777777765431111111111122111 123345667777
Q ss_pred EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCC----CCchhhhccCCcEEEEeccCCCCc---
Q 042509 708 ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAV----FENWIVSLNKLKKLFLINCYNCEI--- 780 (892)
Q Consensus 708 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~--- 780 (892)
....|++.. ......-..+..++.|+.+.+..|.+... +-..+..+++|+.|+|.+|.....
T Consensus 163 i~~rNrlen-----------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 163 ICGRNRLEN-----------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred Eeecccccc-----------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 777666532 11123334455566777777776655320 011233667777777777654321
Q ss_pred -CC-CCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccc
Q 042509 781 -MP-PLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLN 858 (892)
Q Consensus 781 -~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~ 858 (892)
+. .+..+|+|+.|++++|.++.-+...+...- ...+|+|+.|.+.+..--.+-. ..........|.|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al------~~~~p~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL------KESAPSLEVLELAGNEITRDAA----LALAACMAEKPDLE 301 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHH------hccCCCCceeccCcchhHHHHH----HHHHHHHhcchhhH
Confidence 11 255667777777777776665442221100 1246777777765532111000 00111123478888
Q ss_pred eeeecccccC
Q 042509 859 SLEIILCAKL 868 (892)
Q Consensus 859 ~L~i~~c~~L 868 (892)
+|+|++| .+
T Consensus 302 kLnLngN-~l 310 (382)
T KOG1909|consen 302 KLNLNGN-RL 310 (382)
T ss_pred HhcCCcc-cc
Confidence 8888888 44
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.55 E-value=1.1e-07 Score=93.44 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=42.5
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-----CHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-----DEFSVA 244 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-----~~~~~~ 244 (892)
.||||+++++++...+.... ....+++.|+|.+|+|||+|+++++.. ...+....+.+.+.... ....++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDR--LAERGGYVISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHH--HHHHT--EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEEEeccccchhhHHHHHH
Confidence 48999999999999995222 235689999999999999999999984 44332223333333321 125566
Q ss_pred HHHHHhcc
Q 042509 245 KSIIEGLE 252 (892)
Q Consensus 245 ~~i~~~l~ 252 (892)
++++.++.
T Consensus 76 ~~l~~~~~ 83 (185)
T PF13191_consen 76 RQLIDQLL 83 (185)
T ss_dssp HHHS----
T ss_pred HHHHHHhh
Confidence 66655543
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.54 E-value=1.1e-06 Score=95.72 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=109.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
++++|++..++.+..++..+. .+.+.++|++|+||||+|+.+.+. ... .+. ..+.++++...+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~--~~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQ--GKKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhc--chhh
Confidence 468999999999988886532 345789999999999999998873 221 122 2344444321100 0000
Q ss_pred HHH------hccCC-CCCCCCHHHHHHHHHHH---h--cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 247 IIE------GLEGE-TSNLGSLQSYLLRIYEA---I--AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 247 i~~------~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
+.. .+... .......+.....+... . .+.+-+||+||+..-.......+...+......+++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000 00000 00001112121112121 1 234558999999644333444566555544455677777754
Q ss_pred h-hHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 315 E-TVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 315 ~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
. .+.. .-+....+.+.+++.++...++.+.+......- -.+..+.+++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 2 2222 223345788999999999999988764333221 255677899999997765543
No 66
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.8e-06 Score=87.48 Aligned_cols=148 Identities=15% Similarity=0.072 Sum_probs=91.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.|+|..|+|||+|++.+++. .......+.|+++.+ ....+. ...+.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALEAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHHHH-hcC
Confidence 45999999999999999999884 333334566776432 111111 011112 223
Q ss_pred EEEEEecCCCCC-cCChhh-hhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHHHHH
Q 042509 277 FLLVLDDVWNDD-RTKWEP-LNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 277 ~LlVlDd~w~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++..+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999995321 123432 3222222 22466799999842 23333444668999999999999999987
Q ss_pred hhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 345 AFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
+....-. --++...-|++.++|-.-.+
T Consensus 175 a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 7543221 12556778888888776655
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.3e-06 Score=97.44 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=117.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||-+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+.-.-... +..--+ .+..+......+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 368999999999999997654 2467789999999999999888773111000 000000 000111111122221
Q ss_pred Hh-----ccCCCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH
Q 042509 249 EG-----LEGETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS 318 (892)
Q Consensus 249 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 318 (892)
.. +.........+++..+.+... ..++.-++|+|+++..+...++.++..+.....+.++|++| ....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 10 000000112233333222221 24666799999998777777888888777655566655554 444443
Q ss_pred h-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 R-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
. ..+.+..+.++.++.++..+.+.+.+....... -.+..+.|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 334467899999999999999887664322211 1345578999999999755444
No 68
>PTZ00202 tuzin; Provisional
Probab=98.52 E-value=3.2e-06 Score=89.00 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=104.2
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHH
Q 042509 165 FIDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 165 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 244 (892)
+.+...|+||+.+...+...|...+. ...+++.|+|++|+|||||++.+..... + .+++.-. .+..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNp--rg~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDV--RGTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECC--CCHHHHH
Confidence 34566899999999999999875432 2356999999999999999999987422 1 2332222 2779999
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-----c-CCeEEEEEecCCCCCcCChhhhh---hhcCCCCCCcEEEEEcCch
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAI-----A-KKKFLLVLDDVWNDDRTKWEPLN---HCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDd~w~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~ 315 (892)
+.++.+++.+.. ..-.++...|.+.+ . |++.+||+-=-.. ..+..+. ..|.....-|.|++---.+
T Consensus 327 r~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 327 RSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 999999997432 22233444444433 3 6777777653311 1222211 1233444566777755444
Q ss_pred hHHhh---ccCCceEeCCCCCHHHHHHHHHHH
Q 042509 316 TVSRM---MESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 316 ~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
.+.-. ...-..|.+.+++.++|.++-.+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 33221 122457889999999999988764
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1.9e-06 Score=98.07 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=119.0
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.++||-+..++.|...+.... -.+.+.++|..|+||||+|+.+.+.-.-...+ ....+......+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 368999999999998887543 24567899999999999999998742111000 011122222333332
Q ss_pred HhccC-----CCCCCCCHHH---HHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH
Q 042509 249 EGLEG-----ETSNLGSLQS---YLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS 318 (892)
Q Consensus 249 ~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 318 (892)
..-.. .......+++ +...+... ..+++-++|+|+++.-+....+.++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 11000 0000112222 22222211 3467779999999877777788888888776666666555544 4443
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
...+.+..+++++++.++..+++.+.+-...... -.+....|++.++|.+.-+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2334467899999999999999987653322211 13456789999999887554443
No 70
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=3.8e-07 Score=83.08 Aligned_cols=120 Identities=22% Similarity=0.220 Sum_probs=78.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
.+++.|.|+.|+|||||+++++++.. ....++|++..+......... + ..+.+.+...++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 36899999999999999999987422 234567776554222110000 0 222233333347
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhh------ccCCceEeCCCCCHHHH
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRM------MESTNVMFIEELSESEC 337 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 337 (892)
+.+|+||++.. ...|......+.+..+..+|++|+........ .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78899999953 45787777777665567889999987654422 22345788999998774
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.5e-06 Score=93.93 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=116.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccce-eEEEEeCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKI-RMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 247 (892)
.+++|-+..+..+...+.... -.+.+.++|+.|+||||+|+.+++.-.-...... ..+.. +........+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHH
Confidence 368999999998888776543 2467899999999999999999873211110000 00000 0111111111
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE-EcCchhH
Q 042509 248 IEGLEG-----ETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV-TTRKETV 317 (892)
Q Consensus 248 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 317 (892)
...... ........++....+... +.+++-++|+|+++.-+...|..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 000111223322222221 246777999999987767778888888877666666654 5554555
Q ss_pred Hhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 318 SRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 318 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 433 234568999999999999999988754332221 3456779999999886443
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.9e-06 Score=93.94 Aligned_cols=193 Identities=14% Similarity=0.092 Sum_probs=116.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.++||-+..+..|..++.... -.+.+.++|+.|+||||+|+.+++.-.-. +... ...+..... ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 368999999999988887643 23568999999999999999998831111 0000 001111111 12222
Q ss_pred HhccCC-------C-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH
Q 042509 249 EGLEGE-------T-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS 318 (892)
Q Consensus 249 ~~l~~~-------~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 318 (892)
...... . ....++.++...+... ..++.-++|+|+++.-+...++.++..+........+|++| ....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 0 0011222222222221 24566799999998777778888887776654555555444 444443
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
...+.+..+.+.+++.++..+++.+.+...+... -.+....|++.++|.+.-+..
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHHHH
Confidence 2334466899999999999999988764433211 245678899999999864433
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=8.1e-07 Score=83.66 Aligned_cols=125 Identities=20% Similarity=0.152 Sum_probs=73.3
Q ss_pred ecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 172 CGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
+|++..++.+...+.... .+.+.|+|.+|+||||+++.+++. ....-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 478888999988886543 467899999999999999999984 32222346666655433322221111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC------CCCcEEEEEcCchh
Q 042509 252 EGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG------QCGSKILVTTRKET 316 (892)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 316 (892)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999743222223333333322 35778888887553
No 74
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2.6e-08 Score=97.50 Aligned_cols=130 Identities=23% Similarity=0.229 Sum_probs=108.7
Q ss_pred ccccceEEEEEeCCCCCccccccCCCcceEEEecCCccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
.+..+..+++++|.+..+..+..-.+.+|.|+++.|--....++..+.+|..||||+|.++++-..-.+|-|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 46788899999999998888888889999999998744444558889999999999999988766667888999999999
Q ss_pred cCCccccchhhhccccCCeeccccccccccc--ccccCCcCCCcCCceEeccCC
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP--RGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 656 (892)
|. +..+ .++++|-+|.+|+++.|+|..+. .+|++|+.|++|.+.+|.+..
T Consensus 362 N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 87 6666 56889999999988888888764 469999999999988887643
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.46 E-value=4.4e-06 Score=84.82 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.|+|+.|+|||+|++.+++. ....-..+.|+++..... ...+. .+.+.. -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~----~~~~~~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEV----LEGMEQ-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHH----HHHhhh-C
Confidence 57899999999999999999984 333333566776532100 00111 111111 2
Q ss_pred EEEEEecCCCCC-cCChhh-hhhhcCC-CCCC-cEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHHHH
Q 042509 277 FLLVLDDVWNDD-RTKWEP-LNHCLMN-GQCG-SKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 277 ~LlVlDd~w~~~-~~~~~~-l~~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
-++++||+.... ...|+. +...+.. ...| .++|+||+.. +....+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378999995422 134543 2222221 1123 3689998753 3444456667999999999999999988
Q ss_pred HhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 042509 344 LAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGS 380 (892)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 380 (892)
.+....- .--+++..-|++++.|..-.+..+-.
T Consensus 179 ~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 179 RARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6643221 12266778899999887765554433
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.1e-06 Score=92.54 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=115.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCCh------h------------h-hccccee
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDP------D------------V-RNHFKIR 229 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~------~------------~-~~~f~~~ 229 (892)
.++||-+..++.+...+.... -.+.+.++|+.|+||||+|+.+.+.- . + .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 368999999988888876543 24578999999999999998887620 0 0 0111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEE
Q 042509 230 MWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKIL 309 (892)
Q Consensus 230 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ii 309 (892)
+.+..+....+++ .+++++..... -..+++-++|+|+++.-+....+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 11222211100 023566789999997666666777888887766777766
Q ss_pred EEcC-chhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 310 VTTR-KETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 310 vTtr-~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
++|. ...+.. ..+....+++.+++.++..+.+.+.+......- -.+....|++.++|.+..+..
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 6653 344433 234467899999999999999988775433222 145567899999998864433
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=2.2e-06 Score=96.98 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=112.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+.+.-.-.... -+ ..+......+.|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HG----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CC----CCCcccHHHHHHh
Confidence 369999999999999987643 24678999999999999999887731111000 00 0001011111111
Q ss_pred Hh-----ccCCCCCCCCHHHHHHHHHH---H-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH
Q 042509 249 EG-----LEGETSNLGSLQSYLLRIYE---A-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS 318 (892)
Q Consensus 249 ~~-----l~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 318 (892)
.. +..........+.+...+.. . ..+++-++|+|++...+......++..+......+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011122222222211 1 23566799999997655445666777776555566677666543 222
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
...+.+..+++.+++.++....+.+.+-..+... -.+....|++.++|.+.-+..+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 2223455788899999999999988765433221 2456778999999998644443
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=3.7e-06 Score=94.31 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=115.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+. +. |.-|... ..+......+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCC-CCCcccHHHHHHH
Confidence 368999999999999886543 2467889999999999999998773 11 1112211 1122222223222
Q ss_pred HhccCC-----CCCCCCHHHHH---HHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH
Q 042509 249 EGLEGE-----TSNLGSLQSYL---LRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS 318 (892)
Q Consensus 249 ~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 318 (892)
...... .......++.. ..+... ..+++-++|+|+++.-+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 211100 00011222222 111111 12344579999997665567778888777665566665555 444443
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHhh
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTIGS 380 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~ 380 (892)
...+....+++.+++.++....+...+...+... -.+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2234466899999999999998888664332211 14457789999999765 4444433
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.1e-06 Score=95.27 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=116.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~ 246 (892)
+++||-+..++.|..++.... -.+.+.++|..|+||||+|+.+.+.-.-.... ...- ...++.....+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 368998888888988887654 24678999999999999999886521100000 0000 011122222222
Q ss_pred HHHhccC-----CCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-Cchh
Q 042509 247 IIEGLEG-----ETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKET 316 (892)
Q Consensus 247 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 316 (892)
|...-.. .......+++....+... ..++.-++|+|+++.-+...+..++..+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 2110000 000111222222222111 13455689999998877777888888877765666666555 4333
Q ss_pred HH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 317 VS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 317 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
+. ...+....+++++++.++..+.+.+.+...+... -.+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33 2344567899999999999999988764433221 1455678999999988655444
No 80
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5e-06 Score=88.88 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=120.2
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc----cceeEEEEeCCCCCHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH----FKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~ 243 (892)
-..++|.++..+.+...+.... -.+.+.|+|..|+||||+|..+.+. +-.+ +... .....+.....
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~ 91 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPV 91 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHH
Confidence 3468999999999999997654 3567999999999999999888773 2110 1111 01111112223
Q ss_pred HHHHHHh-------ccCC--C-----CCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCC
Q 042509 244 AKSIIEG-------LEGE--T-----SNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQC 304 (892)
Q Consensus 244 ~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~ 304 (892)
.+.+... +..+ . .....+++.. .+.+++ .+++-++|+|+++..+....+.+...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 3444322 1100 0 0112234332 344443 35677999999987777777778887876544
Q ss_pred CcEE-EEEcCchhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 305 GSKI-LVTTRKETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 305 gs~i-ivTtr~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
...+ ++|++...+.. ..+....+++.+++.++..+++.+...... .-.+....|++.++|.|..+..+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 45544433322 223466999999999999999987432111 113446789999999998665543
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=98.42 E-value=3.5e-06 Score=90.15 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=108.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccce-eEEEEeCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKI-RMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 247 (892)
.+++|.++.++.|..++.... .+.+.++|++|+||||+|+.+++.. ....|.. ++-+..+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN------MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 358899988888887765432 3457799999999999999998731 1122221 1222222222211 22222
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHh-hccCCc
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSR-MMESTN 325 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~ 325 (892)
++.+...... .-.++.-++|+|+++.-.......+...+......+++|+++... .+.. ..+...
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211100000 002456799999997655555555666665545567777766432 2211 122345
Q ss_pred eEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 326 VMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 326 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
.+++.++++++....+...+...+..-. .+....|++.++|..-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 8999999999999999887744332211 4557789999999775443
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=7e-06 Score=89.98 Aligned_cols=184 Identities=11% Similarity=0.120 Sum_probs=111.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh--------------------cccce
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR--------------------NHFKI 228 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~ 228 (892)
.+++|.+..++.+.+++.... -.+.+.++|++|+||||+|+.+.+.-.-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 368999999999999886543 24678899999999999998887631100 12221
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEE
Q 042509 229 RMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKI 308 (892)
Q Consensus 229 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~i 308 (892)
+++..+...... ..+++...+... -..+++-++|+|++..-.......+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222211111111 111222211100 02245568999998554444566677777655556666
Q ss_pred EEEcCchh-HHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 309 LVTTRKET-VSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 309 ivTtr~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
|++|.+.. +.. .......+++.++++++..+++...+...+..- -.+.+..|++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 66665433 222 223356788999999999999988764332211 14567889999999987655443
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=4.4e-06 Score=90.12 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=107.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe--CCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV--SDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~ 246 (892)
.+++|+++.++.+..++.... .+.+.++|.+|+||||+|+.+.+.. ....+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 458999999999999886532 3457999999999999999998731 111121 112222 2211111 1111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHh-hccCC
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSR-MMEST 324 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~ 324 (892)
.+..+....+ .....+-++++|++..-.......+...+......+.+|+++... .+.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001335689999986544444556666666555566777766432 1111 11234
Q ss_pred ceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 325 NVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 325 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
..+++.+++.++...++.+.+......- -.+....+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 5789999999999999888764332211 24567789999999887543
No 84
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=4.4e-07 Score=91.71 Aligned_cols=89 Identities=20% Similarity=0.116 Sum_probs=62.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC--CCHHHHHHHHHHhccCCCCCCCCHH------HHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP--FDEFSVAKSIIEGLEGETSNLGSLQ------SYLLR 267 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 267 (892)
...++|+|++|+|||||+++++++.... +|+.++|+++.+. .++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999975444 8999999998776 7999999999444332222221111 11222
Q ss_pred HHHH-hcCCeEEEEEecCC
Q 042509 268 IYEA-IAKKKFLLVLDDVW 285 (892)
Q Consensus 268 l~~~-l~~kr~LlVlDd~w 285 (892)
.... -+|++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25899999999994
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=5e-06 Score=84.12 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=102.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
...-+.+||++|.||||||+.+.+..+.. ...||..|.......-.++|+++... ...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 46778899999999999999999853322 25677777655544555555554321 123567
Q ss_pred CeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE--EcCchh---HHhhccCCceEeCCCCCHHHHHHHHHHHhh--C
Q 042509 275 KKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV--TTRKET---VSRMMESTNVMFIEELSESECWRLFQQLAF--F 347 (892)
Q Consensus 275 kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~ 347 (892)
+|.++++|.|+.-+..+-+.+ ||.-.+|.-++| ||.++. .+..++.+.++.|+.|+.++...++.+... +
T Consensus 222 rkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 899999999976544444443 565566776665 666543 233456788999999999999999987332 2
Q ss_pred CCCC----CCCc---hHHHHHHHHHHhcCCchH
Q 042509 348 GRSP----SECE---NLEEIGRKIVHKCKGLPL 373 (892)
Q Consensus 348 ~~~~----~~~~---~~~~~~~~i~~~c~G~Pl 373 (892)
+... -..+ --..+.+-++..|.|-..
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 1111 123456677888888654
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5e-06 Score=93.53 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=113.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||-+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.-.-...+. ...++.....+.|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHh
Confidence 368999999999999997643 245678999999999999988887311110000 00111111112211
Q ss_pred Hhcc-----CCCCCCCCHHHHHHHHHH----HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH
Q 042509 249 EGLE-----GETSNLGSLQSYLLRIYE----AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS 318 (892)
Q Consensus 249 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 318 (892)
..-. ........+++....+.. -..++.-++|+|+++.-+......+...+......+++|++|.+ ..+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 1000 000011122222221111 12356678999999876667777788888776667776665543 3332
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
...+....+++++++.++....+.+.+-..+... -.+....|++.++|.+.-+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 2234456789999999998887776654332211 134466789999998865443
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=6.1e-06 Score=91.75 Aligned_cols=195 Identities=21% Similarity=0.244 Sum_probs=109.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+.....+...+.... -.+.+.++|++|+||||+|+.+.+.-..... .. ..++........+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~ 81 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSID 81 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHh
Confidence 469999988888888776543 2456899999999999999999773111000 00 00000001111110
Q ss_pred H-------hccCCCCCCCCHHHHHHHHHHH-----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEE-cCch
Q 042509 249 E-------GLEGETSNLGSLQSYLLRIYEA-----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVT-TRKE 315 (892)
Q Consensus 249 ~-------~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivT-tr~~ 315 (892)
. .+.. ......++.. .+.+. ..+++-++|+|+++.-.....+.+...+........+|++ |...
T Consensus 82 ~g~~~dv~el~a--a~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~ 158 (472)
T PRK14962 82 EGTFMDVIELDA--ASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE 158 (472)
T ss_pred cCCCCccEEEeC--cccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence 0 0000 0011122211 12211 2356679999999654444556677666654444554444 4333
Q ss_pred hHHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhhhh
Q 042509 316 TVSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKTIGSLL 382 (892)
Q Consensus 316 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~~l 382 (892)
.+... ......+++.+++.++....+.+.+......- -.+....|++.++| .+.|+..+-.+.
T Consensus 159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44332 33456899999999999999888764332211 14556778888865 456666665543
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=6.4e-06 Score=80.85 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCC
Q 042509 274 KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSP 351 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 351 (892)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 566789999997655566777888887766667777776543 22221 233568999999999999988876 1 1
Q ss_pred CCCchHHHHHHHHHHhcCCchHH
Q 042509 352 SECENLEEIGRKIVHKCKGLPLA 374 (892)
Q Consensus 352 ~~~~~~~~~~~~i~~~c~G~Pla 374 (892)
. .+.+..|++.++|.|..
T Consensus 170 ~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred C-----HHHHHHHHHHcCCCccc
Confidence 1 45688999999998853
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.8e-06 Score=89.09 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=110.5
Q ss_pred ceecchhhHHHHHHHHhcCCcc----cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSE----EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
+++|-+..++.+..++..+... ...-.+-+.++|+.|+|||++|+.+.+.-.-.. .. ...+.....-+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~--~~------~~~Cg~C~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD--PD------EPGCGECRACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC--CC------CCCCCCCHHHH
Confidence 5889999999999999765310 001246788999999999999988866210000 00 00011111111
Q ss_pred HHHHhccCC------CCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 246 SIIEGLEGE------TSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 246 ~i~~~l~~~------~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
.+...-... .......++.. .+.+.+ .+++-++|+|++...+......+...+.....+..+|++|.+
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111100000 00111222222 122221 355568889999776666667777777666666666665554
Q ss_pred -hhHHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 315 -ETVSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 315 -~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
..+... .+....+.+.+++.++..+.+.+.. + . ..+.+..+++.++|.|..+..+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 344322 3446789999999999998887432 1 1 1345678999999999765444
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.36 E-value=7.7e-06 Score=82.91 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=94.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 357899999999999999999873 332224567776432 1111 0 1122223222
Q ss_pred eEEEEEecCCCC-CcCChhh-hhhhcCC-CCCCcEEEEEcCchh---------HHhhccCCceEeCCCCCHHHHHHHHHH
Q 042509 276 KFLLVLDDVWND-DRTKWEP-LNHCLMN-GQCGSKILVTTRKET---------VSRMMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 276 r~LlVlDd~w~~-~~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
. ++|+||+... ....|+. +...+.. ...|..||+|++... ....+....++++++++.++..+++++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 6789999532 2235544 4443332 234667888887432 222334456899999999999999996
Q ss_pred HhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 344 LAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
++....- . --+++..-|++++.|..-.+..+-..|
T Consensus 178 ka~~~~~-~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-H---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6644321 1 125777889999988876655444333
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=6.8e-06 Score=83.46 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=89.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.|+|..|+|||+||+.+++... ... ....+++..... ..+ ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~~----------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LAF----------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HHH----------------------hhc-cc
Confidence 45789999999999999999988421 122 234555543211 000 011 22
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCCC-CCCc-EEEEEcCchhHHh--------hccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMNG-QCGS-KILVTTRKETVSR--------MMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.-+||+||+...+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347889999643322223344444321 2333 4677766433211 22334688999999998777777654
Q ss_pred hCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 346 FFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
-...- . --++..+.+++.+.|.+..+..+...+
T Consensus 171 ~~~~v-~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-Q---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32221 1 125567788889999999877766554
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.1e-05 Score=86.70 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=116.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEE---EEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMW---VCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~ 245 (892)
.+++|.++.++.+.+.+.... -.+.+.++|+.|+||+|+|..+.+.---......... ...-.........+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999887654 2567899999999999999777663100000000000 00000000011112
Q ss_pred HHHHhccCC---------C-----CCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCc
Q 042509 246 SIIEGLEGE---------T-----SNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGS 306 (892)
Q Consensus 246 ~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs 306 (892)
.|...-..+ . .....+++ +..+.+.+ .+++.++|+||+...+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 221111000 0 01122333 22333333 3567799999998777777788888887766667
Q ss_pred EEEEEcCch-hHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 307 KILVTTRKE-TVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 307 ~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
.+|++|... .+.. ..+....+.+.+++.++..+.+.+.... . ..+....+++.++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~------~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L------PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 677766654 3322 2344678999999999999999875311 0 01222678999999998665543
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.1e-06 Score=92.98 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=110.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|-+..++.+..++.... -.+.+.++|..|+||||+|+.+.+.-.-... +. ...+........+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~------~~-~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETG------VT-ATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC------CC-CCCCCCCHHHHHHh
Confidence 368999999999999887643 2456789999999999999988763111000 00 00111111111111
Q ss_pred Hhc-----cCCCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH
Q 042509 249 EGL-----EGETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS 318 (892)
Q Consensus 249 ~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 318 (892)
..- ..........++....+... ..+++-++|+|+++.-+......+...+......+.+|++|.+ ..+.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 000 00000011222222111111 1356779999999766655677788888776556666665543 3332
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
...+....+++++++.++..+.+.+.+...+... -.+..+.|++.++|.+.-+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDA 217 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 2223356899999999999988887664332211 2445678999999987633
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=5.9e-06 Score=96.30 Aligned_cols=172 Identities=20% Similarity=0.290 Sum_probs=98.3
Q ss_pred CceecchhhHH---HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKN---KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
++|+|.+..+. .+...+... ....+.++|++|+||||||+.+++. ...+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 35889888774 455555432 3456789999999999999999983 444441 111110 000
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEE--cCchh--HHh
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVT--TRKET--VSR 319 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 319 (892)
.+..+......+.+ .+++.++||||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111122222222 2567899999997655555556655443 35555553 33321 211
Q ss_pred -hccCCceEeCCCCCHHHHHHHHHHHhhCCC---CCCCCchHHHHHHHHHHhcCCchH
Q 042509 320 -MMESTNVMFIEELSESECWRLFQQLAFFGR---SPSECENLEEIGRKIVHKCKGLPL 373 (892)
Q Consensus 320 -~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~G~Pl 373 (892)
..+....+.+++++.++...++.+.+-... ......--.+..+.|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 223356899999999999999988653100 000011124556778888888654
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.4e-06 Score=90.15 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=115.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE-eCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC-VSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 247 (892)
++++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.-.-...+....|.. +...+.....-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 368999999998988886543 245688999999999999998877311111111111110 01112222222222
Q ss_pred HHhccCC-----CCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-Cchh
Q 042509 248 IEGLEGE-----TSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKET 316 (892)
Q Consensus 248 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 316 (892)
....... .......++... +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 2211100 001111333332 22222 3566689999997655567788888887766677666555 4444
Q ss_pred HHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 317 VSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 317 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
+... ......+++.++++++..+.+...+-.....- -.+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 4322 22345788999999999888887664322211 255678899999998864433
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.30 E-value=6.4e-06 Score=82.37 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=103.4
Q ss_pred ceecc-hhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHH
Q 042509 170 RVCGR-DDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 170 ~~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~ 246 (892)
-++|- .+........+....+ .....+.|+|..|+|||.|.+++++ ...... ..++|++ ..+....
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHH
Confidence 34564 2333344444544332 2344578999999999999999999 443322 2456664 4455666
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc-CChhh-hhhhcCC-CCCCcEEEEEcCch--------
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR-TKWEP-LNHCLMN-GQCGSKILVTTRKE-------- 315 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~-------- 315 (892)
+...+.. ... ..+.+.+++ -=++++||++.-.. ..|.. +...+.. ...|.+||+|++..
T Consensus 79 ~~~~~~~-----~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRD-----GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHT-----TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHc-----ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 6555533 112 233444443 33788999954221 22332 2222221 23466899999642
Q ss_pred -hHHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 316 -TVSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 316 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
+....+...-++++++.+.++..+++.+.+....-. --+++++-|++.+.+..-.+..+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 344445666789999999999999999887543322 22567777888877766555443
No 97
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=6.6e-06 Score=82.54 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=87.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
.+.+.|+|..|+|||+|++.+++.. ...|++.. ....+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3568999999999999999988742 12243321 111111111 111
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCc---------hhHHhhccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRK---------ETVSRMMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
-+|++||+.... ..-+.+...+.. ...|..||+|++. ++....+....++++++++.++-.+++++.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995321 111223333321 2236678998873 3344455667899999999999999999887
Q ss_pred hCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 346 FFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
....-. --+++..-|++++.|..-++..
T Consensus 167 ~~~~~~----l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLY----VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCC----CCHHHHHHHHHHhhhhHHHHHH
Confidence 442211 1256777888888887776654
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.1e-05 Score=89.28 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=117.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+.-.-....+ ...++.....+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhh
Confidence 368999999999999987643 245678999999999999998887311000000 00111111122221
Q ss_pred Hh---------ccCCC-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-Cchh
Q 042509 249 EG---------LEGET-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKET 316 (892)
Q Consensus 249 ~~---------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 316 (892)
.. +.... ....+..++...+... ..+++-++|+|+++.-.....+.|+..+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 00000 0111122222222211 23566689999998777777888888887766666655554 4444
Q ss_pred HHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHhhhh
Q 042509 317 VSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTIGSLL 382 (892)
Q Consensus 317 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l 382 (892)
+.. ..+....+++.+++.++..+.+.+.+...+... -.+....|++.++|.+. |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 432 234467899999999999988887664433211 13456778999999775 444444433
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.5e-05 Score=91.12 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=116.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccce--eEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKI--RMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~ 246 (892)
.+++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+.+.-.-...... ..+ ..+....-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 468999999999999887643 2457889999999999999999873211110000 000 01111112222
Q ss_pred HHHhccCC-----CCCCCCHHHHH---HHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-Cchh
Q 042509 247 IIEGLEGE-----TSNLGSLQSYL---LRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKET 316 (892)
Q Consensus 247 i~~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 316 (892)
|...-... ......+++.. ..++.. ..+++-++|+|++..-+....+.+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211110 00112233322 222111 23556689999997665556777888777766677766555 4333
Q ss_pred HHhh-ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 317 VSRM-MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 317 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
+... .+....+++..++.++....+.+.+....... -.+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23466899999999999999988764332221 1356778999999998755443
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2e-05 Score=93.08 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=114.2
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+.+.-.-..... ...+......+.|..
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHc
Confidence 68999999999999987643 245688999999999999998877321100000 000111111111111
Q ss_pred hc-------cCCCCCCCCHHHHHH---HHHH-HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhH
Q 042509 250 GL-------EGETSNLGSLQSYLL---RIYE-AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETV 317 (892)
Q Consensus 250 ~l-------~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 317 (892)
.- .........+++... .+.. -..++.-++|||+++......++.|+..+......+.+|++| ....+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 10 000001112232222 1111 124566689999998777778888888888766676666555 44444
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
.. .-+....|++..++.++..+++.+.+-...... -.+....|++.++|.+..+.
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 43 234467899999999999988887653322211 13455678999999885443
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.24 E-value=2.5e-06 Score=89.63 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=61.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC--CHHHHHHHHHHhccCCCCCCCCHHH-----HHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF--DEFSVAKSIIEGLEGETSNLGSLQS-----YLLRI 268 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~l 268 (892)
.+-..|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+-....+...... ..-..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999965444 89999999999887 7778888886433222222221111 11112
Q ss_pred HHH--hcCCeEEEEEecCC
Q 042509 269 YEA--IAKKKFLLVLDDVW 285 (892)
Q Consensus 269 ~~~--l~~kr~LlVlDd~w 285 (892)
.++ -.|++.+|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 222 26899999999994
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.8e-05 Score=85.29 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=106.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh------cccceeE-EEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR------NHFKIRM-WVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~s~~~~~~ 241 (892)
++++|.+..++.+...+.... -.+.+.++|++|+||||+|+.+.+...-. ..|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 368999999999999987543 24688999999999999999987731110 1121111 1111110111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH-h
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS-R 319 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~-~ 319 (892)
+..+.+++++... -..+++-++|+|++.......+..+...+......+.+|++| ....+. .
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111111111100 112455689999996544445666766665544455555555 333332 2
Q ss_pred hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 320 MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 320 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
..+....+++.++++++....+...+...+..- -.+..+.|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 223456899999999999999988765433211 1456778899999976533
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.5e-05 Score=88.25 Aligned_cols=197 Identities=15% Similarity=0.189 Sum_probs=116.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+.+.-.-....+ ...++.....+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 368898888888888886543 246788999999999999998887421110000 01112222222222
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH-----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhH
Q 042509 249 EGLEGE-----TSNLGSLQSYLLRIYEA-----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETV 317 (892)
Q Consensus 249 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 317 (892)
...... ......+++... +.+. ..+++-+||+|++..-....+..|...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 211000 000111222211 2222 2456779999999766656677788877654445556565544 444
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHhhhh
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP-LAAKTIGSLL 382 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~~l 382 (892)
.. ..+....+++.+++.++....+...+....... -.+.++.|++.++|.+ .|+..+..++
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 234456889999999999999988664433211 2456778999999965 5777665544
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.6e-05 Score=91.91 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=116.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||-+..++.|..++.... -.+.+.++|..|+||||+|+.+.+. +.-.. +-.....++.....+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHh
Confidence 368999999999988887543 2456789999999999999999873 21000 000011122233344443
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH-----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhH
Q 042509 249 EGLEGE-----TSNLGSLQSYLLRIYEA-----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETV 317 (892)
Q Consensus 249 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 317 (892)
...... .......++... +.+. ..+++-++|+|++..-.....+.+...+......+.+|++|.. ..+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 322111 001122232222 2222 1356679999999655555566777777665556666665543 333
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
.. ..+....+.+..++.++....+.+.+...+... -.+.+..|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 32 223356788999999999988887764432211 1456778999999988755443
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4e-05 Score=87.98 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=111.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++.---. +.. ..+ .+........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~-~~~-~~~-------~pC~~C~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCS-HKT-DLL-------EPCQECIENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhccc-ccC-CCC-------CchhHHHHhh
Confidence 368999999999999997643 25677899999999999999887631000 000 000 0000000000
Q ss_pred H------hccCCC-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEE-EEcCchhHHh
Q 042509 249 E------GLEGET-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKIL-VTTRKETVSR 319 (892)
Q Consensus 249 ~------~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~ 319 (892)
. .+.+.. ....++.+++..+... ..+++-++|+|++..-....+..+...+........+| +|++...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 000000 0011122222222211 23666799999997666667778887777655555544 4555454442
Q ss_pred -hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 320 -MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 320 -~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
..+....+++.+++.++....+...+...+... -.+.++.|++.++|.+.-+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 334467899999999999988887654332211 134577899999997754433
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.3e-05 Score=84.80 Aligned_cols=184 Identities=11% Similarity=0.096 Sum_probs=110.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh--h-----------------ccccee
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV--R-----------------NHFKIR 229 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 229 (892)
.+++|-+..+..+..++.... -.+.+.++|+.|+||||+|+.+.....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368999999999999997643 2456778999999999999988763110 0 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEE
Q 042509 230 MWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKI 308 (892)
Q Consensus 230 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~i 308 (892)
+++..+..... .+...+...+... ..+++-++|+|+++.-.....+.+...+........+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111110000 1111221111111 2466779999999765555666777777665555555
Q ss_pred EEEc-CchhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 309 LVTT-RKETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 309 ivTt-r~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
|++| +...+.. .......+.+.+++.++....+.+.+-..+... -.+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 4333332 223456899999999999988888664333211 13556778899999776554443
No 107
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=5e-05 Score=80.16 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=116.0
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
.+..++||+.+++.+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...=..++++.+..--....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999876543 334677999999999999999999996332222235678887766778889999
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCC--eEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCc--hhHH---
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAIAKK--KFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRK--ETVS--- 318 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~--~~v~--- 318 (892)
|...+...........+.+..+.++.... .+|+|+|.++.-....-..+...|.+ .-+++++|+.--- -+..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 98887322222222255566666666433 58999999854222222233333333 2346665553221 1111
Q ss_pred --hhc----cCCceEeCCCCCHHHHHHHHHHHhhCC
Q 042509 319 --RMM----ESTNVMFIEELSESECWRLFQQLAFFG 348 (892)
Q Consensus 319 --~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~ 348 (892)
+.. -....+...|.+.++-.++|..+....
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 111 124578889999999999999887443
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=3e-05 Score=86.18 Aligned_cols=167 Identities=17% Similarity=0.117 Sum_probs=102.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
...+.|+|..|+|||+|++.+.+. +.... ..+++++ ..++...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 346899999999999999999883 33221 2344553 3456666666654210 12233444443
Q ss_pred CCeEEEEEecCCCCCc-CCh-hhhhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHH
Q 042509 274 KKKFLLVLDDVWNDDR-TKW-EPLNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
+.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++..+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344888999954321 122 233333322 22345788887642 23333455568889999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGS 380 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 380 (892)
.+.+-..... ..--+++..-|++.++|.|-.+.-+..
T Consensus 285 ~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9887532210 012367788999999999987665543
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.8e-05 Score=86.37 Aligned_cols=200 Identities=12% Similarity=0.119 Sum_probs=114.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE-eCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC-VSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 247 (892)
.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+.-.-...++.-.|.. +...+......+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 368999999999988886543 245688999999999999988876311111111001110 01112222222222
Q ss_pred HHhccCC-----CCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE-EcCchhH
Q 042509 248 IEGLEGE-----TSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV-TTRKETV 317 (892)
Q Consensus 248 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 317 (892)
...-... .......++....+... ..+++-++|+|+++.-.....+.+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 2111100 00111233333322222 235566899999976555567778888877655666554 4444444
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHH
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKT 377 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~ 377 (892)
.. .......+++.+++.++....+.+.+...+..- -.+.++.|++.++|..- |+..
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHH
Confidence 32 334467899999999999888877654322211 24567789999999665 4443
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=2e-07 Score=103.89 Aligned_cols=240 Identities=21% Similarity=0.188 Sum_probs=137.2
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
...+..+.+..|.+..+-..+..+++|..|++.++ +..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 34444445555555554344667777777777775 444444477788888888888888876 3456677788888888
Q ss_pred cCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEec
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVG 683 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 683 (892)
|. +..++ .+..+++|+.+.+++|.+..+... ...+.+|+.+.+..|.... ...+..+..+..+. +.-..
T Consensus 150 N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l~~~~--l~~n~ 219 (414)
T KOG0531|consen 150 NL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE------IEGLDLLKKLVLLS--LLDNK 219 (414)
T ss_pred Cc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc------ccchHHHHHHHHhh--ccccc
Confidence 77 55553 355577788887777777766543 4667777777777776543 22333333222110 00000
Q ss_pred cCCCCChhhhhhhcccCCC--CCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchh
Q 042509 684 LGNVKDVDEAKNAELEKKK--NLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 684 l~~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
+..+ ..+.... +|+.++++.|.+. ..+..+..+.++..|++..+.+.. +. .+
T Consensus 220 i~~~--------~~l~~~~~~~L~~l~l~~n~i~----------------~~~~~~~~~~~l~~l~~~~n~~~~-~~-~~ 273 (414)
T KOG0531|consen 220 ISKL--------EGLNELVMLHLRELYLSGNRIS----------------RSPEGLENLKNLPVLDLSSNRISN-LE-GL 273 (414)
T ss_pred ceec--------cCcccchhHHHHHHhcccCccc----------------cccccccccccccccchhhccccc-cc-cc
Confidence 0000 1111112 3778888877763 122455667778888888777654 21 12
Q ss_pred hhccCCcEEEEeccCCC---Cc--CCCCCCCCCCCeEEEcceEEEE
Q 042509 762 VSLNKLKKLFLINCYNC---EI--MPPLGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~---~~--~~~l~~l~~L~~L~L~~~~l~~ 802 (892)
...+.+..+.+..+... .. .+..+..+.++...+..+++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 23344444444444322 11 1125566777777777776544
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=7.2e-05 Score=83.64 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|-+..++.+...+.... -.++..++|..|+||||+|+.+.+.---...-+. ..+......+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 368999999999999886543 2457789999999999999977663100000000 0000000000000
Q ss_pred Hhcc-----CCCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH
Q 042509 249 EGLE-----GETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS 318 (892)
Q Consensus 249 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 318 (892)
.... .........++....+... ..+++-++|+|++..-+......++..+......+.+|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000 0000001122222222211 12556689999998776667777888887766677766666543 222
Q ss_pred -hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 -RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
...+....+++.+++.++....+.+.+...+... -.+.++.|++.++|.+.-+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 1223456899999999999999887664333221 2456778999999998655444
No 112
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.13 E-value=7.1e-05 Score=76.14 Aligned_cols=205 Identities=18% Similarity=0.142 Sum_probs=121.7
Q ss_pred CCceecchh---hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh----cccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDD---EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR----NHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~---~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~ 240 (892)
.+.+||... .++++.+.+..+. .....-+.|||..|+|||++++++.+..-.. ..--.++.|.+...++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 345677654 4555666666554 3456779999999999999999998641111 11115778889999999
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC-CeEEEEEecCCCC---CcCChhhh---hhhcCCCCCCcEEEEEcC
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK-KKFLLVLDDVWND---DRTKWEPL---NHCLMNGQCGSKILVTTR 313 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDd~w~~---~~~~~~~l---~~~l~~~~~gs~iivTtr 313 (892)
..++..|+.+++.+.........+...+.+.++. +--+||+|.+++. ....-..+ ...+.+.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998876666666666665565542 3448899999652 11111222 233333333444555555
Q ss_pred chhHHhh-----ccCCceEeCCCCC-HHHHHHHHHHHh--hCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 314 KETVSRM-----MESTNVMFIEELS-ESECWRLFQQLA--FFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 314 ~~~v~~~-----~~~~~~~~l~~L~-~~~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
...-+-. .+....+.+..-. .++...|+.... +.-..+.. -...++++.|...++|+.=-+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 3221111 1113345555444 334555554432 11122221 2347789999999999875433
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=2.5e-05 Score=85.29 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=99.4
Q ss_pred CCCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD 239 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 239 (892)
...++.|++..++++.+.+..+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999999887532110 0112456899999999999999999983 33333 22211
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCC-----------cCChhhhhhh---cCC--C
Q 042509 240 EFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDD-----------RTKWEPLNHC---LMN--G 302 (892)
Q Consensus 240 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~-----------~~~~~~l~~~---l~~--~ 302 (892)
..+..... + ........+.+.. ...+.+|++|+++.-. ......+... +.. .
T Consensus 190 -~~l~~~~~----g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKYI----G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHhh----h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111100 0 0111122222222 3467899999985421 0111122222 221 1
Q ss_pred CCCcEEEEEcCchhH-----HhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 303 QCGSKILVTTRKETV-----SRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 303 ~~gs~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
..+..||.||..... .+...-...+.+...+.++..++|..++....... .-+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 246678888875322 11111245788999999999999998764432211 112 345677777654
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.11 E-value=3.1e-05 Score=76.41 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=105.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+|||-++-++.+.-.+..... ..+.+-.+.++|++|.||||||.-+.+ ++...+. ++.+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccccChhhHHHHH
Confidence 4699999988888777664432 334577899999999999999999999 4443332 11111111111112222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCC--------CCCCcE-----------EE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMN--------GQCGSK-----------IL 309 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~--------~~~gs~-----------ii 309 (892)
.. |+. .=++++|.++.-.+..-+.+..++.+ .++++| |=
T Consensus 99 t~---------------------Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TN---------------------LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hc---------------------CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 22 222 22556677765443332333332221 123333 33
Q ss_pred EEcCchhHHhhccC--CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 042509 310 VTTRKETVSRMMES--TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGS 380 (892)
Q Consensus 310 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 380 (892)
-|||...+.+.+.. .-+.+++-.+.+|-.++..+.+..-... --++-+.+|+++..|-|.-+.-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~----i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE----IDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC----CChHHHHHHHHhccCCcHHHHHHHH
Confidence 48887665544332 2367888999999999998877332221 1255688999999999975544433
No 115
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.9e-05 Score=85.86 Aligned_cols=196 Identities=13% Similarity=0.141 Sum_probs=115.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|.+..+..|..++.... -.+.+.++|..|+||||+|+.+++.-.-. ..+.. ....+......+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 368999999999999887643 23568899999999999999998842111 11000 011222233333333
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcC-chhHH
Q 042509 249 EGLEGE-----TSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTR-KETVS 318 (892)
Q Consensus 249 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 318 (892)
...... .......++..+.+... ..+++-++|+|+++.-....+..+...+........+|++|. ...+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 222110 01112233332222211 135566899999976665677778887776555565555444 33333
Q ss_pred h-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 R-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
. ..+....+++..++.++....+.+.+....... -.+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 233466888999999998888877664322211 1345778999999988655443
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.2e-05 Score=86.21 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=112.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh---------------------hhcccc
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD---------------------VRNHFK 227 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~ 227 (892)
++++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999987643 246788999999999999987766311 011232
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCC
Q 042509 228 IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ 303 (892)
Q Consensus 228 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~ 303 (892)
. ..+..+... ..++....+.+. ..+++-++|+|++..-+...++.+...+....
T Consensus 92 ~-~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 122211111 122222222111 23456688999997766667788888887766
Q ss_pred CCcEEEEEc-CchhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 304 CGSKILVTT-RKETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 304 ~gs~iivTt-r~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
..+.+|++| +...+.. ..+....+++.+++.++....+.+.+...+... -.+.+..|++.++|..--+.
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 667665544 4444443 234467899999999999999987664433211 13457789999999775443
No 117
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=3.5e-07 Score=101.88 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccc
Q 042509 549 ARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYN 627 (892)
Q Consensus 549 ~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~ 627 (892)
+..+..+.+..+ +.++-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. ++.+ .++..++.|+.|.+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhheec
Confidence 344444444433 3333334666777777777777777666556677777777777776 5555 336666667777666
Q ss_pred ccccccccccccCCcCCCcCCceEeccC
Q 042509 628 DSYLHYLPRGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 628 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 655 (892)
.|.+..+ .++..+++|+.+++.+|...
T Consensus 149 ~N~i~~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 149 GNLISDI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred cCcchhc-cCCccchhhhcccCCcchhh
Confidence 6666655 34555667777776666554
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.3e-05 Score=83.71 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=108.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh---------------------cccc
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR---------------------NHFK 227 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~ 227 (892)
++++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+.-.-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999887543 24678899999999999998887631100 0111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCc
Q 042509 228 IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGS 306 (892)
Q Consensus 228 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs 306 (892)
.+++........ .+..++...+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111110000000 111111111111 123566789999996544445666777777655566
Q ss_pred EEEEEcC-chhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 307 KILVTTR-KETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 307 ~iivTtr-~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
.+|++|. ...+.. ..+....+++.++++++....+.+.+-..+... -.+.++.|++.++|.+. |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666653 333322 223456899999999999988887654322111 24567789999999765 44433
No 119
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=4.1e-06 Score=97.69 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=65.8
Q ss_pred ceEEEecCC-c-cccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccc
Q 042509 552 LRSLLIVGP-I-CEIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYND 628 (892)
Q Consensus 552 Lr~L~l~~~-~-~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~ 628 (892)
++.|+|.++ + ..+|..++++.+|++|+|++|.+. .+|..++.+.+|++|+|++|...+.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666654 2 246677777777777777777766 6777777777777777777775567777777777777776655
Q ss_pred cccc-cccccccCC-cCCCcCCceEe
Q 042509 629 SYLH-YLPRGIERL-TCLRTLSEFVV 652 (892)
Q Consensus 629 ~~l~-~lp~~i~~L-~~L~~L~l~~~ 652 (892)
|.+. .+|..++.+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5554 566665542 24444444444
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=2.5e-06 Score=65.95 Aligned_cols=56 Identities=34% Similarity=0.567 Sum_probs=30.7
Q ss_pred CcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccc-hhhhccccCCeeccccc
Q 042509 573 YLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYLIYNDS 629 (892)
Q Consensus 573 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~~~~~ 629 (892)
+|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+.++++|++|.+++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666665553 35556666666666555 33333 34555666666644444
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.06 E-value=0.00011 Score=75.60 Aligned_cols=167 Identities=16% Similarity=0.224 Sum_probs=106.0
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
++.+.+|+.++..+...+..... .-+.+|.|+|-+|.|||.+++++++.. . -..+|+++-+.++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 45688999999999998876542 235677999999999999999999954 2 236899999999999999999
Q ss_pred HHhccCCCCCCCC-------HHHHHHHHHH--Hhc--CCeEEEEEecCCCCCcCChhh-hhhhc---CC-CCCCcEEEEE
Q 042509 248 IEGLEGETSNLGS-------LQSYLLRIYE--AIA--KKKFLLVLDDVWNDDRTKWEP-LNHCL---MN-GQCGSKILVT 311 (892)
Q Consensus 248 ~~~l~~~~~~~~~-------~~~~~~~l~~--~l~--~kr~LlVlDd~w~~~~~~~~~-l~~~l---~~-~~~gs~iivT 311 (892)
+.+......+... .......+.+ ... ++.++||||++.. ..+.+. +...+ +. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 9998522222211 1112222222 122 4689999999943 222222 11111 11 1112334444
Q ss_pred cCchhHHhh---ccC--CceEeCCCCCHHHHHHHHHHH
Q 042509 312 TRKETVSRM---MES--TNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 312 tr~~~v~~~---~~~--~~~~~l~~L~~~~~~~lf~~~ 344 (892)
+-...-... +++ ..++.....+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 433221111 344 346778899999999999764
No 122
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=6.5e-06 Score=85.93 Aligned_cols=236 Identities=21% Similarity=0.186 Sum_probs=152.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccc-eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFK-IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..+-+.++|.|||||||++-++.. +..-|. .+.++......+...+.-.+...+...... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 467899999999999999998877 555675 455666666666666666666656544322 1223445666777
Q ss_pred CCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhccCCceEeCCCCCHH-HHHHHHHHHhhCCCCC-
Q 042509 274 KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMMESTNVMFIEELSES-ECWRLFQQLAFFGRSP- 351 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 351 (892)
++|.++|+||-..- .+.-..+...+..+.+.-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997311 112223444454555566788888854322 33445666677655 7888887665332221
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhccccccc-------cccchhhHHHhhhcCChHhH
Q 042509 352 SECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSELWKVEE-------FENDLFGPLLMSFNDLPSRI 424 (892)
Q Consensus 352 ~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~ 424 (892)
.-...-......|.++.+|.|++|...+...+.-. ..+-...++.....+.+ -.......+.+||.=|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11122355678899999999999999988876542 33333333222211111 12456778999999999988
Q ss_pred HHHHhhhcCCCCCcccc
Q 042509 425 KRCFTFCAVFPKDWDIK 441 (892)
Q Consensus 425 k~cf~~~s~fp~~~~i~ 441 (892)
+--|.-++.|...|...
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 89999999998776654
No 123
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=9.9e-06 Score=94.54 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=87.4
Q ss_pred cceEEEEEeCCCC-CccccccCCCcceEEEecCC-c-cccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCEEecc
Q 042509 528 KLRHFMLVLGKSV-AFPVSIFKARKLRSLLIVGP-I-CEIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQTLEME 603 (892)
Q Consensus 528 ~lr~L~l~~~~~~-~~p~~~~~~~~Lr~L~l~~~-~-~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~ 603 (892)
.++.|.+++|.+. .+|..+..+++|++|+++++ + ..+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899988875 67888999999999999987 3 378999999999999999999988 899999999999999999
Q ss_pred CcCCccccchhhhcc-ccCCeeccccc
Q 042509 604 DCCNLKRLPQEIGKL-VNLRYLIYNDS 629 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l-~~L~~L~~~~~ 629 (892)
+|...+.+|..++.+ .++..+...+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999788999988764 45666644444
No 124
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=2.4e-06 Score=66.06 Aligned_cols=58 Identities=34% Similarity=0.401 Sum_probs=43.0
Q ss_pred CCCCeEEEeeecCCCCCC-chhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceE
Q 042509 741 PNLESLEIWEYKGKAVFE-NWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMN 799 (892)
Q Consensus 741 ~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 799 (892)
++|++|++++|.+.. +| .++..+++|+.|+|++|.+....+. +..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888887777 44 4667788888888887776655554 7788888888888775
No 125
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.00063 Score=72.89 Aligned_cols=201 Identities=12% Similarity=0.094 Sum_probs=118.7
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-----CCHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-----FDEFS 242 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~ 242 (892)
.+..|+|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..+. ..+ ..+++++... .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHH
Confidence 3457788867777777776543 58999999999999999999884322 233 4667776552 34555
Q ss_pred HHHHHHHhccCCCCC-----------CCCHHHHHHHHHHHh---cCCeEEEEEecCCCCCc--CChhhhhhhcC----CC
Q 042509 243 VAKSIIEGLEGETSN-----------LGSLQSYLLRIYEAI---AKKKFLLVLDDVWNDDR--TKWEPLNHCLM----NG 302 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDd~w~~~~--~~~~~l~~~l~----~~ 302 (892)
.++.++..+...-.- ..........+.+.+ .+++.+|++|+++.--. .....+...+. ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 565555544332110 112223333344432 26899999999954211 11122222221 11
Q ss_pred C----CCcEEEEEcCchh---HHhh----ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 303 Q----CGSKILVTTRKET---VSRM----MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 303 ~----~gs~iivTtr~~~---v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
. ..+-.++...... .... ......++|.+++.+|...|+.++-.. .. ....++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCC
Confidence 1 1221222222111 1111 111347889999999999999876421 11 22378899999999
Q ss_pred hHHHHHHhhhhccC
Q 042509 372 PLAAKTIGSLLCFK 385 (892)
Q Consensus 372 Plai~~~~~~l~~~ 385 (892)
|..+..++..+..+
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999654
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=1.9e-05 Score=83.69 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=63.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC--CCHHHHHHHHHHhccCCCCCCCCHH------HHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP--FDEFSVAKSIIEGLEGETSNLGSLQ------SYLL 266 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 266 (892)
....++|+|++|.|||||++.+++... ..+|+..+||.+.+. .++.++++.+...+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 356899999999999999999999533 337999999999866 7899999999655443332221111 1111
Q ss_pred HHHHH-hcCCeEEEEEecCC
Q 042509 267 RIYEA-IAKKKFLLVLDDVW 285 (892)
Q Consensus 267 ~l~~~-l~~kr~LlVlDd~w 285 (892)
..... -+|++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 11122 36899999999994
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.01 E-value=3.2e-05 Score=83.46 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=76.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++++.+...+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||++++..+..+....+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788999999999998753 3588899999999999999998543345678889999998888766654331
Q ss_pred HhccCCCCCCCCH-HHHHHHHHHHh--cCCeEEEEEecCCCCCcCC-hhhhhhhc
Q 042509 249 EGLEGETSNLGSL-QSYLLRIYEAI--AKKKFLLVLDDVWNDDRTK-WEPLNHCL 299 (892)
Q Consensus 249 ~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~~-~~~l~~~l 299 (892)
.....-.-. ......+.+.. .++++++|+|++...+... +..+...+
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 111010000 11122222222 2468999999996554333 34444433
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00015 Score=82.52 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=115.0
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+.---..... . ..+......+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~----~pC~~C~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---P----MPCGECSSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---C----CCCccchHHHHHH
Confidence 368999999999999997643 356788999999999999999888421110000 0 0001111111111
Q ss_pred HhccC-----CCCCCCCHHHHHHHH---HH-HhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH
Q 042509 249 EGLEG-----ETSNLGSLQSYLLRI---YE-AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS 318 (892)
Q Consensus 249 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 318 (892)
..-.. ........++..... .. -..+++-++|+|+++.-+...++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 000011222222211 11 12456678999999766666677788877766666666665543 3333
Q ss_pred h-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 319 R-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 319 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
. ..+....+++.+++.++..+.+.+.+....... -.+.+..|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 223456789999999999988887764433221 2456777999999988644443
No 129
>PRK06620 hypothetical protein; Validated
Probab=98.00 E-value=0.00012 Score=72.86 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=80.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999999887431 1 1211 00000 0 011 123
Q ss_pred EEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCchh-------HHhhccCCceEeCCCCCHHHHHHHHHHHhhCC
Q 042509 277 FLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRKET-------VSRMMESTNVMFIEELSESECWRLFQQLAFFG 348 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 348 (892)
-++++||++.-.. ..+...+.. ...|..||+|++... ....+....++++++++.++...++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999952110 122222211 134668999987432 33334455689999999999988888876432
Q ss_pred CCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 349 RSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
.- . --+++.+-|++++.|.--.+.
T Consensus 164 ~l-~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SV-T---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CC-C---CCHHHHHHHHHHccCCHHHHH
Confidence 11 1 125677788888887665443
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=4.6e-05 Score=76.11 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=116.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEE-EEeCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMW-VCVSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i 247 (892)
++++|-+..++.+...+.. . ...+...+|++|.|||+-|..++..---.+.|.+++- .++|...... +.+.=
T Consensus 36 de~~gQe~vV~~L~~a~~~-~-----~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-R-----ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-c-----CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 4689999999999999876 2 3678999999999999999888773222344555442 3344322211 00000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh--cCCe-EEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHHhh-cc
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAI--AKKK-FLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVSRM-ME 322 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~ 322 (892)
..+...+........ .-++ -.||||+++....+.|..++..+.+....++.|+.+.. ..+... .+
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001111100000000 0122 47899999888889999999998887767775544433 222221 23
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 323 STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
...-++.++|.+++...-++..+-.++...+ .+..+.|++.++|--. |+.++
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 3557889999999999988887755444332 4556789999988543 44443
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.00 E-value=5.7e-05 Score=81.18 Aligned_cols=148 Identities=13% Similarity=0.120 Sum_probs=86.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|.++..+.+..++.... ...++.++|++|+||||+|+.+++. ... ....++.+. ... +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHH
Confidence 468999999999999887532 3568888999999999999999883 221 123444433 111 1111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCC-CcCChhhhhhhcCCCCCCcEEEEEcCchh-HHh-hccCCc
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWND-DRTKWEPLNHCLMNGQCGSKILVTTRKET-VSR-MMESTN 325 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~ 325 (892)
...... ..+.+.+-++|+||+... .......+...+.....++++|+||.... +.. ..+...
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001234568899999644 22223345444555556778888886532 111 122344
Q ss_pred eEeCCCCCHHHHHHHHHH
Q 042509 326 VMFIEELSESECWRLFQQ 343 (892)
Q Consensus 326 ~~~l~~L~~~~~~~lf~~ 343 (892)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788887766543
No 132
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0001 Score=84.69 Aligned_cols=194 Identities=12% Similarity=0.168 Sum_probs=112.0
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+++||.+..++.|...+.... -.+.+.++|..|+||||+|+.+.+.-.-....+ ...++.....+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 368999999999999887543 246678999999999999988877311000000 00111111111211
Q ss_pred Hhc-------cCCC-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH
Q 042509 249 EGL-------EGET-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS 318 (892)
Q Consensus 249 ~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 318 (892)
..- .+.. ....+..++...+... ..+++-++|+|+++.-+......+...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 110 0000 0001122222222111 23556689999997666666777888887665666665544 444444
Q ss_pred h-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 319 R-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 319 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
. ..+....+++.+++.++....+...+...+..- -.+....|++.++|..- |+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 234466888999999999888877653332211 14556789999999764 44444
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.98 E-value=0.00014 Score=80.79 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=92.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
...+.|+|..|+|||+|++++++. +.... ..++|++. .+....+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 346899999999999999999984 43332 24556643 33444455444321 122 2333333
Q ss_pred CCeEEEEEecCCCCCcCC-h-hhhhhhcCC-CCCCcEEEEEcCch--h-------HHhhccCCceEeCCCCCHHHHHHHH
Q 042509 274 KKKFLLVLDDVWNDDRTK-W-EPLNHCLMN-GQCGSKILVTTRKE--T-------VSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~--~-------v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
+ .-+|||||+....... + +.+...+.. ...+..||+|+... . +...+.....+.+++.+.++...++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3388899996422111 1 223332221 12345678877642 1 2222333457899999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
.+.+......- -+++...|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHH
Confidence 98875432211 2567778888888876643
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.97 E-value=9.2e-05 Score=88.82 Aligned_cols=152 Identities=21% Similarity=0.303 Sum_probs=87.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc------cceeEE-EEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH------FKIRMW-VCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~s~~~~~~ 241 (892)
+.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+. +... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 468999999999999987654 234669999999999999999883 3211 123333 22221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCC-------cCChh-hhhhhcCCCCCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDD-------RTKWE-PLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~-------~~~~~-~l~~~l~~~~~gs~iivT 311 (892)
+........+.+.....+.+.+ .+++.+|++|+++.-. ..+-. .+...+..+ .-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 0000001112222222222222 2568999999996421 11111 133333322 3456666
Q ss_pred cCchhHHhh-------ccCCceEeCCCCCHHHHHHHHHHH
Q 042509 312 TRKETVSRM-------MESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 312 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
|...+.... ......+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 665432211 123458999999999999997543
No 135
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.7e-07 Score=89.74 Aligned_cols=12 Identities=17% Similarity=-0.128 Sum_probs=7.4
Q ss_pred CCCcCCceEecc
Q 042509 643 CLRTLSEFVVSR 654 (892)
Q Consensus 643 ~L~~L~l~~~~~ 654 (892)
.||+||++...+
T Consensus 186 Rlq~lDLS~s~i 197 (419)
T KOG2120|consen 186 RLQHLDLSNSVI 197 (419)
T ss_pred hhHHhhcchhhe
Confidence 477777665544
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00023 Score=74.31 Aligned_cols=136 Identities=15% Similarity=0.078 Sum_probs=74.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.++|.+|+||||+|+.+++.....+.-...-|+.++ ..++. ....+.. .......+.+ ..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~----~~~~g~~-----~~~~~~~l~~-a~g- 123 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLV----GQYIGHT-----APKTKEVLKK-AMG- 123 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHH----HHHhccc-----hHHHHHHHHH-ccC-
Confidence 3458899999999999999997732111111122245444 12222 2221111 1111122222 223
Q ss_pred eEEEEEecCCCC---------CcCChhhhhhhcCCCCCCcEEEEEcCchhHHhhc-------c-CCceEeCCCCCHHHHH
Q 042509 276 KFLLVLDDVWND---------DRTKWEPLNHCLMNGQCGSKILVTTRKETVSRMM-------E-STNVMFIEELSESECW 338 (892)
Q Consensus 276 r~LlVlDd~w~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~-~~~~~~l~~L~~~~~~ 338 (892)
-+|++|++..- ..+..+.+...+.....+..||+++....+.... + -...+++.+++.+|..
T Consensus 124 -gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 -GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred -CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 48999999531 0112233444455544566777777654433221 1 1347899999999999
Q ss_pred HHHHHHhhC
Q 042509 339 RLFQQLAFF 347 (892)
Q Consensus 339 ~lf~~~~~~ 347 (892)
+++.+.+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887643
No 137
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.5e-07 Score=92.37 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=31.3
Q ss_pred cceEEEecCC-c--cccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCEEeccCcCCccc
Q 042509 551 KLRSLLIVGP-I--CEIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQTLEMEDCCNLKR 610 (892)
Q Consensus 551 ~Lr~L~l~~~-~--~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~ 610 (892)
+|++|+++.. + ..+..-+..|.+|+.|+|.++.+. .+-..+.+-.+|+.||++.|..+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence 3555555552 1 122333455666666666666555 3344455556666666666654443
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=57.04 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=32.2
Q ss_pred CCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccc
Q 042509 572 MYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLP 612 (892)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp 612 (892)
++|++|++++|.|+.+|..+++|++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47899999999999998888999999999999987 66554
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00037 Score=79.82 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=112.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+...-...- ...+++.....+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 469999999999999987653 24677889999999999998887621100000 011122222222222
Q ss_pred HhccCC-----CCCCCCHHH---HHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc-CchhHH
Q 042509 249 EGLEGE-----TSNLGSLQS---YLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT-RKETVS 318 (892)
Q Consensus 249 ~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 318 (892)
...... .......++ +...+... ..+++-++|+|+++.-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 211000 000112222 22221111 24567788999997665566777877776655555555444 443333
Q ss_pred h-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 319 R-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 319 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
. ..+....+.+.+++.++....+...+...+... -.+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 2 233456788999999999888887664332211 14556788999999876444
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=1.5e-05 Score=84.88 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=47.4
Q ss_pred hcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCee-ccccccccccccc
Q 042509 568 IENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYL-IYNDSYLHYLPRG 637 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L-~~~~~~l~~lp~~ 637 (892)
+..+.++++|++++|.++.+|. --.+|++|++++|..+..+|..+ .++|++| +..|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 5567888899999988888882 22468999999888888888755 3578888 4444466667654
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=0.0001 Score=80.71 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=97.0
Q ss_pred CCCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD 239 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 239 (892)
..+++.|+++.++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3456899999999998876432110 0123566899999999999999999983 3322 222221
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC-----------CcCChhhhhhhcC---C--C
Q 042509 240 EFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND-----------DRTKWEPLNHCLM---N--G 302 (892)
Q Consensus 240 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~-----------~~~~~~~l~~~l~---~--~ 302 (892)
.++. ....+ ........+.+.. ...+.+|+|||++.- +...+..+...+. . .
T Consensus 199 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 11111 1111222222222 356789999999531 0011112333221 1 1
Q ss_pred CCCcEEEEEcCchhHH-hhc---c-CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 303 QCGSKILVTTRKETVS-RMM---E-STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 303 ~~gs~iivTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
..+..||.||...+.. ..+ + -...+++.+.+.++..++|+.+.....- ...-++ ..+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 2355677777654321 111 1 1357899999999999999987643221 111223 3466666664
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.0005 Score=76.29 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=88.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
..-+.|+|..|+|||+|++.+++. +......+++++. ..+...+...+... . ...+++.++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 356889999999999999999984 3332234556542 33444444444221 1 122333333 3
Q ss_pred eEEEEEecCCCCCcCCh--hhhhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHHHH
Q 042509 276 KFLLVLDDVWNDDRTKW--EPLNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
.-++++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888999854322222 223222211 11355688888542 2222334446899999999999999988
Q ss_pred HhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 344 LAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
.+...... --.++..-|+..+.|.
T Consensus 283 k~~~~~~~----l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR----IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC----CCHHHHHHHHHhcCCC
Confidence 77543221 1245556676666643
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.0003 Score=79.12 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=93.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..-+.|+|.+|+|||+|++.+++. +...+ ..++|++.. ++...+...+... .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh
Confidence 356899999999999999999994 44443 235566443 3344444444221 12 22333343
Q ss_pred CCeEEEEEecCCCCCcCC-h-hhhhhhcCC-CCCCcEEEEEcCchh---------HHhhccCCceEeCCCCCHHHHHHHH
Q 042509 274 KKKFLLVLDDVWNDDRTK-W-EPLNHCLMN-GQCGSKILVTTRKET---------VSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
+.-+|||||+....... + +.+...+.. ...|..||+||.... +...+....++++++.+.++..+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 24489999996422111 1 223332211 122445788776431 2233444468999999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
.+.+...... --+++...|++.+.|..-.+
T Consensus 290 ~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGID----LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCCC----CCHHHHHHHHcCcCCCHHHH
Confidence 9987542211 12567788999999877643
No 144
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.85 E-value=0.00015 Score=75.08 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=81.5
Q ss_pred ceecchhhHHHHHHHHhcC---------CcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 170 RVCGRDDEKNKLIRKLLSE---------SSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
.++|.+..++++.+..... .-........+.++|++|+||||+|+.+++.-...+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788887776665432211 000122456788999999999999999987311011111122333322
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC--------cCChhhhhhhcCCCCCCcEEEEEc
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD--------RTKWEPLNHCLMNGQCGSKILVTT 312 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~--------~~~~~~l~~~l~~~~~gs~iivTt 312 (892)
.++.. ...+ .........+.+ .. .-+|++|+++.-. ....+.+...+........+|+++
T Consensus 83 ~~l~~----~~~g-----~~~~~~~~~~~~-a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYIG-----HTAQKTREVIKK-AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhcc-----chHHHHHHHHHh-cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 1100 011111222222 22 2488999996421 112233444444433334556665
Q ss_pred CchhHHh-------hccC-CceEeCCCCCHHHHHHHHHHHhh
Q 042509 313 RKETVSR-------MMES-TNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 313 r~~~v~~-------~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
...+... ..+. ...+++++++.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5433211 1112 24688999999999999988764
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00048 Score=72.77 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-------------hcccceeEEEEeCC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-------------RNHFKIRMWVCVSD 236 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~s~ 236 (892)
+++|.+..++.+...+.... -.+...++|..|+||+++|..+.+.--- ...+....|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58999999999999997653 2578999999999999999777653100 11222334442110
Q ss_pred CCCHHHHHHHHHHhcc--CCCCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEE
Q 042509 237 PFDEFSVAKSIIEGLE--GETSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKIL 309 (892)
Q Consensus 237 ~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ii 309 (892)
..+-..+-.+-++..+ ........+++. ..+.+.+ .+++-++|+|++...+......+...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000011111111 011111223332 2233333 4667799999997766667777888887655 44455
Q ss_pred EEc-CchhHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 310 VTT-RKETVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 310 vTt-r~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
++| ....+.. ..+.+..+++.++++++..+.+.+...... .......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 444 4443333 334567999999999999999987642111 0111357899999999766543
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.81 E-value=0.00057 Score=67.41 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=65.6
Q ss_pred cCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 166 IDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
+.-+.++|.+.+++.|++-...--. .....-+.++|..|.|||++++++.+. ....= .--|.|..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEECH---------
Confidence 3445799999999998764432111 113456888999999999999999883 22111 11122221
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCC-CCCcCChhhhhhhcCC
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVW-NDDRTKWEPLNHCLMN 301 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w-~~~~~~~~~l~~~l~~ 301 (892)
.+..++..+...++. ...||+|++||+- +.+...+..+.+.|..
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 123344444444442 4579999999984 2333456666666653
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00027 Score=78.63 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=93.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc-c-eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF-K-IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..-+.|+|.+|+|||+|++.+++. +.... . .++|++. .+.+.++...+... ..+ .+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 345999999999999999999994 43332 2 4566653 34555665555321 122 2333333
Q ss_pred CCeEEEEEecCCCC-CcCCh-hhhhhhcCC-CCCCcEEEEEcC-chh--------HHhhccCCceEeCCCCCHHHHHHHH
Q 042509 274 KKKFLLVLDDVWND-DRTKW-EPLNHCLMN-GQCGSKILVTTR-KET--------VSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 274 ~kr~LlVlDd~w~~-~~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
.+.-+|++||+... +...+ +.+...+.. ...|..||+||. ... +...+.....+.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999632 11112 223332221 122456888875 321 2222334558899999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLA 374 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 374 (892)
.+.+...... --.++...|++.+.|..-.
T Consensus 273 ~~~~~~~~~~----l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 273 RKMLEIEHGE----LPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHhcCCC----CCHHHHHHHHhccccCHHH
Confidence 9887432221 1256777888888876543
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00051 Score=77.51 Aligned_cols=155 Identities=12% Similarity=0.103 Sum_probs=92.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
..+.|+|..|+|||.|++.+++. ....+ ..++|++. .++..++...+... .. ..+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 35899999999999999999994 43322 24556643 34444444443211 11 123333332
Q ss_pred CeEEEEEecCCCCCc-CChh-hhhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHHH
Q 042509 275 KKFLLVLDDVWNDDR-TKWE-PLNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLFQ 342 (892)
Q Consensus 275 kr~LlVlDd~w~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 342 (892)
-=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-++++++.+.+...+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34788999964322 2232 23332221 12355688888752 233445556789999999999999999
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHHhcCCchH
Q 042509 343 QLAFFGRSPSECENLEEIGRKIVHKCKGLPL 373 (892)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 373 (892)
+++....-.- -+++.+-|++++.+..-
T Consensus 457 kka~~r~l~l----~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQLNA----PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCCCC----CHHHHHHHHHhccCCHH
Confidence 8875432211 25667777777766544
No 149
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00036 Score=74.08 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=97.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhcc-------CCC-CCCCCHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLE-------GET-SNLGSLQSYLLR 267 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-------~~~-~~~~~~~~~~~~ 267 (892)
.+.+.++|+.|+||||+|+.+.+.---..... ...+.....-+.+...-. ... .....+++..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~- 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE- 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-
Confidence 56788999999999999988777311000000 001111111111111000 000 01122333332
Q ss_pred HHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH-hhccCCceEeCCCCCHHHHHHH
Q 042509 268 IYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS-RMMESTNVMFIEELSESECWRL 340 (892)
Q Consensus 268 l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~l 340 (892)
+.+.+ .+++-++|+|+++..+......+...+.....++.+|+||.+. .+. +..+....+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 22222 3455566789998777778888888887766677777777654 333 2334567899999999999998
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 341 FQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 341 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
+.... ... ..+.+..++..++|.|..+..+
T Consensus 174 L~~~~-~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQAL-PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhc-ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 87643 111 1233557889999999866554
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.0002 Score=85.49 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=88.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh---hhccc-ceeEEEEeCCCCCHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD---VRNHF-KIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~ 244 (892)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.+++.-. +...+ +..+|.. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH--
Confidence 468999999999999887653 23467999999999999999988321 11111 3344421 1111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCC---------cCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDD---------RTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
+... . ....+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+..+ .-++|-+|..
T Consensus 249 --l~a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 249 --LLAG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred --Hhhh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 1110 0 01123333444444433 3467899999996311 11112233333322 2345555554
Q ss_pred hhHHhh-------ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 315 ETVSRM-------MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 315 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.+.... ......+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 1224578999999999999998654
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.73 E-value=0.00025 Score=85.70 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=87.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh---hhccc-ceeEEEEeCCCCCHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD---VRNHF-KIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~ 244 (892)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.++..-. +.... +..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~-- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL-- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH--
Confidence 458999999999999997654 23457999999999999999888421 11111 234553 1 1111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC-------CcCChhh-hhhhcCCCCCCcEEEEEcCch
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND-------DRTKWEP-LNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~-------~~~~~~~-l~~~l~~~~~gs~iivTtr~~ 315 (892)
++ .+.. ...+.++....+.+.+ ..++.+|++|+++.- ....... +...+..+ .-++|.+|...
T Consensus 246 --l~---ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 246 --LL---AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred --Hh---ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 11 1111 1123344444443333 356899999999521 0011122 32333322 24566666655
Q ss_pred hHHhh-------ccCCceEeCCCCCHHHHHHHHHH
Q 042509 316 TVSRM-------MESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 316 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
+.... ......+.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12345788888999998888764
No 152
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.71 E-value=0.00039 Score=72.63 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=72.8
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeE
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKF 277 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 277 (892)
.+.++|.+|.||||+|+.+++.....+.....-|+.++. .+ ++..+.+.. .......+.+ . ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~-a--~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR-A--MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH-c--cCc
Confidence 588999999999999977766311111111123444442 12 222222211 1111222222 2 235
Q ss_pred EEEEecCCCC----C-----cCChhhhhhhcCCCCCCcEEEEEcCchhHHhhccC--------CceEeCCCCCHHHHHHH
Q 042509 278 LLVLDDVWND----D-----RTKWEPLNHCLMNGQCGSKILVTTRKETVSRMMES--------TNVMFIEELSESECWRL 340 (892)
Q Consensus 278 LlVlDd~w~~----~-----~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~--------~~~~~l~~L~~~~~~~l 340 (892)
+|+||++..- + ...++.+...+.....+.+||+++........... ...+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 1 11234455555555556677777764433222111 34789999999999999
Q ss_pred HHHHhh
Q 042509 341 FQQLAF 346 (892)
Q Consensus 341 f~~~~~ 346 (892)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 153
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.002 Score=63.27 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=110.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe-CCCCCHHHHHHHHHHhccCCCCCC--CCHHHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV-SDPFDEFSVAKSIIEGLEGETSNL--GSLQSYLLRIYEA 271 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 271 (892)
+.+++.++|.-|.|||.+++..... ..+ +.++=|.+ ........+...++..+..+.... ...++....+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 4579999999999999999944332 111 11222333 334667778888888887632211 1223333334433
Q ss_pred h-cCCe-EEEEEecCCCCCcCChhhhhhhcCCCCCCc---EEEEEcCch--------hHHhhccCCce-EeCCCCCHHHH
Q 042509 272 I-AKKK-FLLVLDDVWNDDRTKWEPLNHCLMNGQCGS---KILVTTRKE--------TVSRMMESTNV-MFIEELSESEC 337 (892)
Q Consensus 272 l-~~kr-~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~--------~v~~~~~~~~~-~~l~~L~~~~~ 337 (892)
. +++| ..+++||......+..+.++........++ +|+..-..+ .....-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5777 999999998766666666655433221122 244433321 11111112334 89999999999
Q ss_pred HHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 338 WRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 338 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
..|+..+..+...+..- --.+....|.....|.|.++..++...
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHHH
Confidence 99998877555332221 124456679999999999998877643
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0019 Score=69.27 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=85.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
....+.|+|..|.|||.|++++.+ ....+......+++ +.+....+++..+.. .-....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999999 55555553333333 234444444444422 1223344444
Q ss_pred CeEEEEEecCCCCC-cCChhh-hhhhcCC-CCCCcEEEEEcCc---------hhHHhhccCCceEeCCCCCHHHHHHHHH
Q 042509 275 KKFLLVLDDVWNDD-RTKWEP-LNHCLMN-GQCGSKILVTTRK---------ETVSRMMESTNVMFIEELSESECWRLFQ 342 (892)
Q Consensus 275 kr~LlVlDd~w~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 342 (892)
.-=++++||++.-. .+.|+. +...+.. ...|..||+|++. +++...++..-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33388899996421 122322 3332322 1234489999964 2444555666799999999999999999
Q ss_pred HHhhCCC
Q 042509 343 QLAFFGR 349 (892)
Q Consensus 343 ~~~~~~~ 349 (892)
+.+....
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8764433
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.6e-05 Score=78.44 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=107.2
Q ss_pred CcCCcceEEcCCCCCCcc---cccccCCCCCCEEeccCcCCc---cccchhhhccccCCeecccccccc--cccccccCC
Q 042509 570 NFMYLRFLKLSKAEIVEL---PETCCELFNLQTLEMEDCCNL---KRLPQEIGKLVNLRYLIYNDSYLH--YLPRGIERL 641 (892)
Q Consensus 570 ~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~L~~~~~~l~--~lp~~i~~L 641 (892)
.+.+++.|||.+|.|+.. -.-+.+|+.|++|+++.|... +.+| ..+.+|+.|.++++.+. ..-..+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 455677777777777633 233456777777777766522 2222 24556777766554332 222335566
Q ss_pred cCCCcCCceEeccCCCccC-CCCCCc-ccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhh
Q 042509 642 TCLRTLSEFVVSRSGGKYG-SKASNL-EGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEE 719 (892)
Q Consensus 642 ~~L~~L~l~~~~~~~~~~~-~~~~~l-~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 719 (892)
+.++.|+++.|...-.... ...... ..+..|..+. .. ...-...+.--+.++++..+.+..|.+.+
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~-c~--------~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--- 213 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP-CL--------EQLWLNKNKLSRIFPNVNSVFVCEGPLKT--- 213 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCC-cH--------HHHHHHHHhHHhhcccchheeeecCcccc---
Confidence 7777777766632210000 000001 1222222111 00 00000011112345888999998887643
Q ss_pred HhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCC--chhhhccCCcEEEEeccCCCCcCCC-------CCCCCCC
Q 042509 720 EESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFE--NWIVSLNKLKKLFLINCYNCEIMPP-------LGKLPFL 790 (892)
Q Consensus 720 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~~~~-------l~~l~~L 790 (892)
..-.....+++.+..|+|+.+++.. .. +.+..++.|+.|.++++++.+.+.. ++.|+++
T Consensus 214 -----------~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 214 -----------ESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred -----------hhhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 2223455667777788888877543 11 1244789999999999887665442 4677888
Q ss_pred CeEEE
Q 042509 791 ESLKI 795 (892)
Q Consensus 791 ~~L~L 795 (892)
+.|+=
T Consensus 282 ~vLNG 286 (418)
T KOG2982|consen 282 QVLNG 286 (418)
T ss_pred EEecC
Confidence 87753
No 156
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.65 E-value=0.0017 Score=78.06 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=86.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|.+..+++|.+++.........+..++.++|++|+|||++|+.+.+ .....|- -++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHcC---
Confidence 45889999999998876532110112345899999999999999999998 3433332 222333223322211
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCC----hhhhhhhcCC--------C-------CCCcEEE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTK----WEPLNHCLMN--------G-------QCGSKIL 309 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 309 (892)
. . ..........+.+.+.+.- .++-+|+||+++...... ...+...+.. . ..+..+|
T Consensus 392 -~-~-~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H-R-RTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C-C-CceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 0 0001111122333333332 333488999996432211 1222222211 0 0123345
Q ss_pred EEcCchh-HH-hhccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 310 VTTRKET-VS-RMMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 310 vTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.||.... +. .......++++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554432 11 112334588999999999888887654
No 157
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.001 Score=69.77 Aligned_cols=176 Identities=10% Similarity=0.067 Sum_probs=103.2
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc-----
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL----- 251 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l----- 251 (892)
..+.+...+.... -.+.+.++|+.|+||+++|+.+.+.---... . ...++....-+.+...-
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~-~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNY-Q-------SEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCC-C-------CCCCCCCHHHHHHHcCCCCCEE
Confidence 3455555554433 3568999999999999999887662100000 0 00000111111111100
Q ss_pred --cCC-CCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hH-Hhhc
Q 042509 252 --EGE-TSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TV-SRMM 321 (892)
Q Consensus 252 --~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v-~~~~ 321 (892)
... ......+++... +.+.+ .+++-++|+|++...+......+...+.....++.+|++|.+. .+ .+..
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 001122333322 22222 3556689999998777778888998888877777776666553 33 3444
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
+....+.+.+++++++.+.+.... .. .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-----~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG-----IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC-----Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 557789999999999999886531 01 1346789999999977654
No 158
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0016 Score=72.49 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
+.+-+|.++-+++|++++.-..-.+..+.++++.+|++|+|||.+|+.++. .....|- -++|+.-.|..+|-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcccc
Confidence 456789999999999998654322334678999999999999999999998 4554542 23455544443332110
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc----CChhhhhhhcCCC-------------CCCcEEEE
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR----TKWEPLNHCLMNG-------------QCGSKILV 310 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~----~~~~~l~~~l~~~-------------~~gs~iiv 310 (892)
-..+ ..-...+++.|.+ .+-..-|+.+|.|+.--. +.-..+...|... --=|+|++
T Consensus 485 RTYV------GAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 RTYV------GAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eeee------ccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 0000 1111223333332 234456888999853110 1111222222211 12356654
Q ss_pred EcCchhHHhh----ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 311 TTRKETVSRM----MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 311 Ttr~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
...-..+... .....++++.+...+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3322222211 2335689999999999887776664
No 159
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.61 E-value=0.0012 Score=78.45 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=90.7
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.++. .....|- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccch
Confidence 456899999999999888742211112346899999999999999999987 3333332 23334333332222111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCC----hhhhhhhcCCC---------------CCCcEE
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTK----WEPLNHCLMNG---------------QCGSKI 308 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~----~~~l~~~l~~~---------------~~gs~i 308 (892)
....+ .......+.+.+. ....-+++||.++...... ...+...+... -...-+
T Consensus 396 ~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 11110 1111223333322 2234478999996533221 23344433321 123334
Q ss_pred EEEcCchhHHhh-ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 309 LVTTRKETVSRM-MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 309 ivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
|.|+....+... .+...++++.+++++|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455544332221 2335688899999999988887765
No 160
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.61 E-value=3.1e-06 Score=87.52 Aligned_cols=287 Identities=16% Similarity=0.137 Sum_probs=161.8
Q ss_pred CCcceEEcCCCC-CC--cccccccCCCCCCEEeccCcCCcccc-chhh-hccccCCee-ccccccccccc--ccccCCcC
Q 042509 572 MYLRFLKLSKAE-IV--ELPETCCELFNLQTLEMEDCCNLKRL-PQEI-GKLVNLRYL-IYNDSYLHYLP--RGIERLTC 643 (892)
Q Consensus 572 ~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i-~~l~~L~~L-~~~~~~l~~lp--~~i~~L~~ 643 (892)
-.|+.|+++|+. +. .+-..-.++++++.|++.+|..++.- -..+ ..+++|++| ..+|..++..- .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468899999886 33 44444567899999999999866532 1223 468999999 55555555321 12345788
Q ss_pred CCcCCceEeccCCC-ccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhh
Q 042509 644 LRTLSEFVVSRSGG-KYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEES 722 (892)
Q Consensus 644 L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 722 (892)
|.+|+++-+..-.+ .......+..+ +..+ ...++..... ++....-..+..+..+++..+...+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~---l~~~----~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lT------ 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKE---LEKL----SLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLT------ 282 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchh---hhhh----hhcccccccH--HHHHHHhccChHhhccchhhhcccc------
Confidence 88888776543221 00001111222 2211 1112222211 1111111223334445544443211
Q ss_pred hhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch-hh-hccCCcEEEEeccCCCCcCC--CC-CCCCCCCeEEEcc
Q 042509 723 MEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENW-IV-SLNKLKKLFLINCYNCEIMP--PL-GKLPFLESLKIRN 797 (892)
Q Consensus 723 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~-~~-~l~~L~~L~L~~~~~~~~~~--~l-~~l~~L~~L~L~~ 797 (892)
+..+...-..+..|+.|+.+++...+..+-| ++ +.++|+.|-+..|....... .+ .+.+.|+.+++..
T Consensus 283 -------D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 283 -------DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred -------chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 0122222234567888888887653322222 22 67899999999887533321 23 4578899999888
Q ss_pred eEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCc-CCCcCCC
Q 042509 798 MNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLK-SLPNQLL 876 (892)
Q Consensus 798 ~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~-~lp~~l~ 876 (892)
|...... .+... ....|.|+.|.+..|+...+-... .....-..+..|+.+++.+||.++ ..-..+.
T Consensus 356 ~~~~~d~-tL~sl--------s~~C~~lr~lslshce~itD~gi~---~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 356 CGLITDG-TLASL--------SRNCPRLRVLSLSHCELITDEGIR---HLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred cceehhh-hHhhh--------ccCCchhccCChhhhhhhhhhhhh---hhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 7733222 22222 346788899988877554433100 012223467889999999999877 3344566
Q ss_pred CCcceE-EEEcCCCCCC
Q 042509 877 QRTKLN-LNISLCPTLF 892 (892)
Q Consensus 877 ~l~~L~-L~i~~c~~l~ 892 (892)
..++|+ +++.+|...+
T Consensus 424 ~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVT 440 (483)
T ss_pred hCcccceeeeechhhhh
Confidence 788999 9999987653
No 161
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=2.5e-06 Score=93.81 Aligned_cols=127 Identities=20% Similarity=0.120 Sum_probs=100.9
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCCccccChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 604 (892)
+.++...++++|.+..+..++.-++.|++|+|+.|-..--+.+..|.+|+.|||++|.+..+|.- ...+ +|+.|++++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 66788888999988877778888899999999987544445788999999999999999988864 3334 399999999
Q ss_pred cCCccccchhhhccccCCeeccccccccccc--ccccCCcCCCcCCceEeccC
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP--RGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~ 655 (892)
|. ++.+ .++.+|.+|++|++++|.+.... .-++.|..|..|++.+|...
T Consensus 242 N~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 87 7777 56899999999999888776432 12566778888888888654
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.00021 Score=73.80 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=61.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.++|.+|+|||+||..+++. ...+-..++|++ ..+++..+........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 35899999999999999999994 433334566665 3345555544432211 11121 2334444334
Q ss_pred EEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCch
Q 042509 277 FLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 315 (892)
||||||+..+....|.. +...+.. -..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544456644 3333322 23456799999743
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0015 Score=68.71 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=68.2
Q ss_pred cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCC
Q 042509 273 AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRS 350 (892)
Q Consensus 273 ~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 350 (892)
.+++-++|+|++...+...-..+...+.....++.+|++|.. ..+. +..+.+..+.+.+++.+++.+.+.... .
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~- 186 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V- 186 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C-
Confidence 356779999999766666667788888777777777777664 3333 333456789999999999988886531 1
Q ss_pred CCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 351 PSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 351 ~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
. ...+..++..++|.|+.+..+.
T Consensus 187 -~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2235678999999998765543
No 164
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=4.4e-06 Score=91.90 Aligned_cols=87 Identities=26% Similarity=0.308 Sum_probs=63.0
Q ss_pred hhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchh-hhccccCCeecccccccccccccccCCcCC
Q 042509 566 KEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPRGIERLTCL 644 (892)
Q Consensus 566 ~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L 644 (892)
.++.-+++|+.|+|++|+++..- .+..|++|++|||++|. +..+|.- ...+. |..|.+++|.+..+ .++.+|.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhh-hhHHhhhhh
Confidence 44556777888888888877664 66777888888888887 6666642 23343 77777777777766 578888888
Q ss_pred CcCCceEeccCC
Q 042509 645 RTLSEFVVSRSG 656 (892)
Q Consensus 645 ~~L~l~~~~~~~ 656 (892)
+.||++.|.+.+
T Consensus 257 ~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 257 YGLDLSYNLLSE 268 (1096)
T ss_pred hccchhHhhhhc
Confidence 888888887654
No 165
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0022 Score=67.64 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc------
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL------ 251 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l------ 251 (892)
.+.+...+.... -.+...+.|+.|+||+++|+.+.+.---..... ...+.....-+.+...-
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEE
Confidence 455556665433 256788999999999999988776310000000 00111111112111110
Q ss_pred -cCCCCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHH-hhccC
Q 042509 252 -EGETSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVS-RMMES 323 (892)
Q Consensus 252 -~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~ 323 (892)
.........+++... +.+.+ .+++-++|+|+++..+......+...+.....++.+|++|.+. .+. +..+.
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 000001122333332 22222 4667789999998777778888988888877788777777653 343 33445
Q ss_pred CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 324 TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
...+.+.++++++..+.+..... . . ...+...+..++|.|..+.
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~--~---~----~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS--A---E----ISEILTALRINYGRPLLAL 201 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc--c---C----hHHHHHHHHHcCCCHHHHH
Confidence 77899999999999988877531 1 1 1124567888999997443
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.00085 Score=71.82 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=92.2
Q ss_pred ceec-chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 170 RVCG-RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 170 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.++| -+..++.+...+.... -.+...++|+.|+||||+|+.+.+..--....... .+.....-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 6667777777776543 35678999999999999998886631000000000 000111111111
Q ss_pred HhccC------CCCCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hH
Q 042509 249 EGLEG------ETSNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TV 317 (892)
Q Consensus 249 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 317 (892)
..-.. ........++....+... ..+++-++|+|++...+......+...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000112233332222211 23556689999997666666777888888777778777777543 33
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHH
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
.. .-+....+++.+++.++..+.+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 22 234467899999999999888865
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00011 Score=67.36 Aligned_cols=21 Identities=43% Similarity=0.426 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999993
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.52 E-value=0.00092 Score=81.10 Aligned_cols=154 Identities=18% Similarity=0.273 Sum_probs=85.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc------cceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH------FKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 242 (892)
+.++||+.+++++++.|.... ...+.++|.+|+|||++|+.+... +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 459999999999999997643 234568999999999999988874 2211 12333321 1111
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHh-c-CCeEEEEEecCCCCC-----c---CChhhhhhhcCCCCCCcEEEEEc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAI-A-KKKFLLVLDDVWNDD-----R---TKWEPLNHCLMNGQCGSKILVTT 312 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDd~w~~~-----~---~~~~~l~~~l~~~~~gs~iivTt 312 (892)
++. +.. ...+.+.....+.+.+ + +++.+|++|+++.-. . +.-+.+...+.. + .-++|-+|
T Consensus 240 ----l~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g-~i~~IgaT 309 (852)
T TIGR03346 240 ----LIA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-G-ELHCIGAT 309 (852)
T ss_pred ----Hhh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-C-ceEEEEeC
Confidence 110 100 1112333333333333 2 468999999996321 0 011112222211 1 23555555
Q ss_pred CchhHHhh-------ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 313 RKETVSRM-------MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 313 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
........ ......+.+...+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54433211 1234568899899999999887653
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.51 E-value=0.0004 Score=79.53 Aligned_cols=206 Identities=11% Similarity=0.177 Sum_probs=101.7
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC---CCCHHHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD---PFDEFSV 243 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~ 243 (892)
.-++++|.++.++++..++....- .....+++.|+|++|+||||+++.++... . ++..-|+.-.. ..+...+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l--~--~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL--G--IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh--h--hHHHHHhhhhhhccccccccc
Confidence 345799999999999998865432 11234689999999999999999998842 1 22233322110 0011111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHH-------hcCCeEEEEEecCCCC---CcCChhhhhh-hcCCCCCCcEEEEEc
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEA-------IAKKKFLLVLDDVWND---DRTKWEPLNH-CLMNGQCGSKILVTT 312 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~-------l~~kr~LlVlDd~w~~---~~~~~~~l~~-~l~~~~~gs~iivTt 312 (892)
...+.+++.................... ..+++.+|+||++.+. ....+..+.. .+...+.-.-|++||
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 1222222211111111112222221111 1356789999999321 1122333333 222222223455555
Q ss_pred Cchh---------HH-------hhcc--CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCc---hHHHHHHHHHHhcCCc
Q 042509 313 RKET---------VS-------RMME--STNVMFIEELSESECWRLFQQLAFFGRSPSECE---NLEEIGRKIVHKCKGL 371 (892)
Q Consensus 313 r~~~---------v~-------~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~---~~~~~~~~i~~~c~G~ 371 (892)
-... .. .... ....+.+.+++..+-.+.+.+.+-......... .-.+....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 2211 00 1111 234588999999997777776553221110000 0134556677777775
Q ss_pred hHHHHH
Q 042509 372 PLAAKT 377 (892)
Q Consensus 372 Plai~~ 377 (892)
-..+..
T Consensus 317 iRsAIn 322 (637)
T TIGR00602 317 IRSAIN 322 (637)
T ss_pred HHHHHH
Confidence 544333
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.49 E-value=0.00062 Score=64.54 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCCh----hhh--------------cccceeEEEEe
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDP----DVR--------------NHFKIRMWVCV 234 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~--------------~~f~~~~wv~~ 234 (892)
|-+...+.+.+.+.... -.+.+.++|..|+||+|+|..+.+.- ... .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44556677777776543 24578999999999999997776631 110 11222334432
Q ss_pred CCC---CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEE
Q 042509 235 SDP---FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 235 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivT 311 (892)
... ...+++- .+...+.... ..+++=++|+||+.......+..++..+.....++.+|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222222 3333322211 1345678999999887788888899999888888988888
Q ss_pred cCchh-H-HhhccCCceEeCCCCC
Q 042509 312 TRKET-V-SRMMESTNVMFIEELS 333 (892)
Q Consensus 312 tr~~~-v-~~~~~~~~~~~l~~L~ 333 (892)
|++.. + .+..+....+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 87654 2 3333445567776654
No 171
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=1e-05 Score=83.75 Aligned_cols=294 Identities=16% Similarity=0.088 Sum_probs=169.5
Q ss_pred CcceEEEecCC----ccccChhhcCcCCcceEEcCCCC-CCc-ccccc-cCCCCCCEEeccCcCCccccc--hhhhcccc
Q 042509 550 RKLRSLLIVGP----ICEIPKEIENFMYLRFLKLSKAE-IVE-LPETC-CELFNLQTLEMEDCCNLKRLP--QEIGKLVN 620 (892)
Q Consensus 550 ~~Lr~L~l~~~----~~~lp~~i~~l~~L~~L~L~~~~-i~~-lp~~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~l~~ 620 (892)
..||.|.+.|. ...+-..-.+++++..|++.+|. |+. .-.++ ..+.+|++|++..|..++... .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35677777763 22233334678899999999987 551 11222 457899999999988765432 23457899
Q ss_pred CCee-ccccccccc--ccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCC---CceEEeccCCCCChhhhh
Q 042509 621 LRYL-IYNDSYLHY--LPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLR---GFLAIVGLGNVKDVDEAK 694 (892)
Q Consensus 621 L~~L-~~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~---~~l~i~~l~~~~~~~~~~ 694 (892)
|++| ...|..+.. +-.-..++.+|+.+.+.++... .+..|.....-. .+++...+..+.+.+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~- 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLW- 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---------cHHHHHHHhccChHhhccchhhhccccchHHH-
Confidence 9999 445544443 1111334455666654432211 111111110000 01222223333332211
Q ss_pred hhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhC-CCCCCCCeEEEeeecCCCCCC-chhh-hccCCcEEE
Q 042509 695 NAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEAL-RPPPNLESLEIWEYKGKAVFE-NWIV-SLNKLKKLF 771 (892)
Q Consensus 695 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~p-~~~~-~l~~L~~L~ 771 (892)
..-..+..|+.|..+.+...+ +.+...| ....+|+.|.+.++.--+..- ..++ +.+.|+.++
T Consensus 288 -~i~~~c~~lq~l~~s~~t~~~--------------d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 288 -LIACGCHALQVLCYSSCTDIT--------------DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred -HHhhhhhHhhhhcccCCCCCc--------------hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 122346788999998765432 4444445 346899999999987422111 1122 678999999
Q ss_pred EeccCCCCc--CCC-CCCCCCCCeEEEcceE-EEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCc
Q 042509 772 LINCYNCEI--MPP-LGKLPFLESLKIRNMN-VKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSG 847 (892)
Q Consensus 772 L~~~~~~~~--~~~-l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~ 847 (892)
+..|..... +.. -.++|.|+.|.|++|. +++.+...+..+ .-+...|..|.+.+++.+.+-.
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~-------~c~~~~l~~lEL~n~p~i~d~~------- 418 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS-------SCSLEGLEVLELDNCPLITDAT------- 418 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc-------cccccccceeeecCCCCchHHH-------
Confidence 999865433 222 3568999999999988 665543333221 2355678888888887655432
Q ss_pred ccccCcCCccceeeecccccCcCCC--cCCCCCcceE
Q 042509 848 KEEITIMPQLNSLEIILCAKLKSLP--NQLLQRTKLN 882 (892)
Q Consensus 848 ~~~~~~lp~L~~L~i~~c~~L~~lp--~~l~~l~~L~ 882 (892)
-+.+...++|+.+++.+|.....-| ....++|+++
T Consensus 419 Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 419 LEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred HHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 2334468999999999997766333 2334555555
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.0015 Score=79.02 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=84.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc------cceeE-EEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH------FKIRM-WVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~-wv~~s~~~~~~ 241 (892)
+.++||+.+++++++.|.... ...+.++|.+|+|||++|+.+... +... ....+ ++.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhh-----
Confidence 459999999999999997654 235669999999999999988884 2111 12232 232221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCCcC-------Chhh-hhhhcCCCCCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDDRT-------KWEP-LNHCLMNGQCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~-------~~~~-l~~~l~~~~~gs~iivT 311 (892)
+. . +.. ...+.+.....+.+.+ .+++.++++|+++.-... +-.. +...+..+ .-++|-|
T Consensus 245 -l~----a---g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~Iga 313 (857)
T PRK10865 245 -LV----A---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGA 313 (857)
T ss_pred -hh----h---ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEc
Confidence 10 0 000 1112223233332222 357899999999642100 1112 33333222 3456666
Q ss_pred cCchhHHhh-------ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 312 TRKETVSRM-------MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 312 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
|...+.... ......+.+..-+.++...++....
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 655443211 1223356677678899988886543
No 173
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00025 Score=75.85 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=41.3
Q ss_pred ccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCC
Q 042509 698 LEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYN 777 (892)
Q Consensus 698 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 777 (892)
+..+.++..|+++.|.+. .+| .-+++|++|.+++|.-...+|..+ .++|++|++++|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~----------------sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE----------------SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPE 106 (426)
T ss_pred HHHhcCCCEEEeCCCCCc----------------ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccc
Confidence 455677777777766552 233 124467777776644333355544 24677777776643
Q ss_pred CCcCCCCCCCCCCCeEEEcceE
Q 042509 778 CEIMPPLGKLPFLESLKIRNMN 799 (892)
Q Consensus 778 ~~~~~~l~~l~~L~~L~L~~~~ 799 (892)
...+| ++|+.|++.++.
T Consensus 107 L~sLP-----~sLe~L~L~~n~ 123 (426)
T PRK15386 107 ISGLP-----ESVRSLEIKGSA 123 (426)
T ss_pred ccccc-----cccceEEeCCCC
Confidence 33222 346666665443
No 174
>PRK10536 hypothetical protein; Provisional
Probab=97.48 E-value=0.0015 Score=65.34 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=75.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE----eCC-----CCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC----VSD-----PFD 239 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----~s~-----~~~ 239 (892)
..+.++......+..++... .++.++|.+|.|||+||.++..+.-..+.|+.++-+. +++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 45778888888888888542 3899999999999999998877432234454333221 111 011
Q ss_pred HHHHH----HHHHHhccCCCCCCCCHHHHHH--------HHHHHhcCCeE---EEEEecCCCCCcCChhhhhhhcCCCCC
Q 042509 240 EFSVA----KSIIEGLEGETSNLGSLQSYLL--------RIYEAIAKKKF---LLVLDDVWNDDRTKWEPLNHCLMNGQC 304 (892)
Q Consensus 240 ~~~~~----~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDd~w~~~~~~~~~l~~~l~~~~~ 304 (892)
..+-+ +.+...+..-. .....+.... .=..+++|+.+ +||+|++.+.+. .++...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 22211 11111111100 0001111100 00135567665 999999966544 445555566678
Q ss_pred CcEEEEEcCchh
Q 042509 305 GSKILVTTRKET 316 (892)
Q Consensus 305 gs~iivTtr~~~ 316 (892)
+|+||+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 999999876543
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=4.5e-05 Score=88.72 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=41.0
Q ss_pred cCCcceEEcCCCCCC--cccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccccc--ccccCCcCCCc
Q 042509 571 FMYLRFLKLSKAEIV--ELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP--RGIERLTCLRT 646 (892)
Q Consensus 571 l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~L~~L~~ 646 (892)
|+.|+.|.+++-.+. ++-.-..+++||..||+|+++ ++.+ .++++|++|+.|...+-.+..-+ ..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 556666666654433 222334455666666666655 4444 55666666666644332222111 23455566666
Q ss_pred CCceEec
Q 042509 647 LSEFVVS 653 (892)
Q Consensus 647 L~l~~~~ 653 (892)
||++...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 6555443
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.46 E-value=0.00048 Score=64.00 Aligned_cols=87 Identities=23% Similarity=0.148 Sum_probs=47.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC-
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK- 275 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 275 (892)
..+.|+|.+|+||||+++.++.. .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999984 3222223556655443322222211 011111111122222333444444433
Q ss_pred eEEEEEecCCCC
Q 042509 276 KFLLVLDDVWND 287 (892)
Q Consensus 276 r~LlVlDd~w~~ 287 (892)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999653
No 177
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=2.8e-05 Score=67.89 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred EEEEeCCCCCcc---ccccCCCcceEEEecCC-ccccChhhc-CcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcC
Q 042509 532 FMLVLGKSVAFP---VSIFKARKLRSLLIVGP-ICEIPKEIE-NFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 532 L~l~~~~~~~~p---~~~~~~~~Lr~L~l~~~-~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 606 (892)
++++++.+..++ ..+.+..+|...++++| +.++|+.|. +.+.+..|+|++|.|+.+|..+..++.|+.|+++.|.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc
Confidence 444444443332 23334455555566654 445565553 3346666777777777777666667777777777666
Q ss_pred CccccchhhhccccCCeeccccccccccccc
Q 042509 607 NLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG 637 (892)
Q Consensus 607 ~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~ 637 (892)
+...|..+..|.+|-+|+...|.+..+|-.
T Consensus 112 -l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 112 -LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred -cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 555666666666666666666655555543
No 178
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.41 E-value=0.004 Score=69.58 Aligned_cols=208 Identities=14% Similarity=0.076 Sum_probs=126.9
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh------hhcccceeEEEEeCCCCCHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD------VRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~wv~~s~~~~~~ 241 (892)
+..+-+|+.+..+|...+..--.+ +...+.+.|.|.+|.|||..+..|.+.-. --..|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 344678999999998888654332 23456999999999999999999998421 112343 3455555556799
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc-----CCeEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCch
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA-----KKKFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~ 315 (892)
+++..|..++.+.. .........|..++. .+..++++|+++.--...-+.+...|.+ ..++||++|-+-..
T Consensus 473 ~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999997754 233444455555543 4568888888732111112334445555 34677766544211
Q ss_pred -----------hHHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 316 -----------TVSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 316 -----------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
.++..++ ...+...|.+.++-.++...+..+. ........+=++++++...|-.-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1122212 2367788999999888887765443 222223445556666666666666655554443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0034 Score=72.53 Aligned_cols=134 Identities=19% Similarity=0.340 Sum_probs=85.4
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~ 242 (892)
..++|-+..+..+.+.+..... +.+...++...+|+.|+|||.||+++... -| +..+-+.+|+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy----- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY----- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-----
Confidence 3689999999999888865432 12345678888999999999999988772 24 33444444431
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeE-EEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKF-LLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILV 310 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iiv 310 (892)
.-+.-+..+-+.++.-.-.++ ...|-+..+.++| +|.||++....++..+.+...|.++. ..+-||+
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 122223333333333222222 2335556677877 88899998888888888888887652 2444666
Q ss_pred EcC
Q 042509 311 TTR 313 (892)
Q Consensus 311 Ttr 313 (892)
||.
T Consensus 640 TSN 642 (786)
T COG0542 640 TSN 642 (786)
T ss_pred ecc
Confidence 765
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.001 Score=78.38 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=88.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc-----cceeEEEEeCCCCCHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-----FKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~ 243 (892)
+.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~-- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIG-- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHH--
Confidence 358999999999999998743 2335689999999999999988731 1111 13444421 111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC------C--cCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND------D--RTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~------~--~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
.++. +.. ...+.+.....+.+.+ +.++.+|++|+++.- . ..+...+..++... ..-+||-+|..
T Consensus 252 --~lla---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 252 --SLLA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred --HHhc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 1111 110 1123333333343333 355679999999531 0 11122222222222 13455666654
Q ss_pred hhHHhh-------ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 315 ETVSRM-------MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 315 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.+.... ......+.+.+.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443211 1234579999999999999998643
No 181
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.39 E-value=0.0018 Score=72.19 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=89.5
Q ss_pred CceecchhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcc-----cceeEEEEeCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-----FKIRMWVCVSD 236 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~ 236 (892)
.++.|.+..++++.+.+..+-. -+-...+-+.++|++|.|||++|+.+++. .... +....|+.++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4588899999998887642110 00123456899999999999999999994 3222 12344454432
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCC-------cCCh-----hhhhhhcCCC-
Q 042509 237 PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDD-------RTKW-----EPLNHCLMNG- 302 (892)
Q Consensus 237 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~-------~~~~-----~~l~~~l~~~- 302 (892)
. +++....+. ....+..+....++. -.+++.+|+||+++.-- .... .++...+...
T Consensus 260 ~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 111111000 000111122222222 23578999999996310 0111 2233333321
Q ss_pred -CCCcEEEEEcCchhHHh-hc---cC-CceEeCCCCCHHHHHHHHHHHh
Q 042509 303 -QCGSKILVTTRKETVSR-MM---ES-TNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 303 -~~gs~iivTtr~~~v~~-~~---~~-~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
..+..||.||...+... .+ +. ...+++...+.++..++|.++.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666665443211 11 12 3468999999999999999875
No 182
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.39 E-value=0.00016 Score=51.06 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCCCEEeccCcCCccccchhhhccccCCeeccccccccccc
Q 042509 595 FNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP 635 (892)
Q Consensus 595 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp 635 (892)
++|++|++++|. ++.+|..+++|++|++|.+++|.+..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999998 7889888999999999988888887664
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0037 Score=70.13 Aligned_cols=166 Identities=15% Similarity=0.186 Sum_probs=94.4
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
+.+-+|-++.+++|++.|.-..-....+..++++||++|+|||+|++.+++ .....|- =++++...|..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhcccc
Confidence 456789999999999998643221223457999999999999999999998 4555552 23444433333321110
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcC----ChhhhhhhcCCCC-------------CCcEEE-
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRT----KWEPLNHCLMNGQ-------------CGSKIL- 309 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~----~~~~l~~~l~~~~-------------~gs~ii- 309 (892)
.+.- ..-.....+.+.+ .+-+.-|++||.++....+ .-..+...|.... -=|.|+
T Consensus 397 -----RTYI-GamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 -----RTYI-GAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred -----cccc-ccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0000 0111222233322 3456779999999542211 1112332222110 124443
Q ss_pred EEcCc-hh-H-HhhccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 310 VTTRK-ET-V-SRMMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 310 vTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
|||-+ -+ + +..+....++++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34432 21 1 2234556799999999999998888765
No 184
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.0023 Score=70.18 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=76.1
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeE
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKF 277 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 277 (892)
++.|+|+-++||||+++.+... .... .+++..-+......-+. +....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 9999999999999999777663 2222 55554332111111111 111222222222778
Q ss_pred EEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhH-----Hhh-ccCCceEeCCCCCHHHHHHHH
Q 042509 278 LLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETV-----SRM-MESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 278 LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~-~~~~~~~~l~~L~~~~~~~lf 341 (892)
.|+||.|. ....|......+.+.++. +|++|+-+... +.. .|....+++.||+..|...+-
T Consensus 97 yifLDEIq--~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQ--NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEeccc--CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999994 557899988888876666 88888876433 222 344668999999999987653
No 185
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.006 Score=65.07 Aligned_cols=180 Identities=9% Similarity=0.027 Sum_probs=104.0
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc-----
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL----- 251 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l----- 251 (892)
.-+++...+..+. -.+.+.+.|+.|+||+++|..+...--=...-+ ...++....-+.+...-
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-------HKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcCCCCCEE
Confidence 3456666665543 357888999999999999987665210000000 00011111111111100
Q ss_pred --cCCC-CCCCCHHHHHHHHHHH----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH-hhcc
Q 042509 252 --EGET-SNLGSLQSYLLRIYEA----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS-RMME 322 (892)
Q Consensus 252 --~~~~-~~~~~~~~~~~~l~~~----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~-~~~~ 322 (892)
.... .....+++........ ..+++-++|+|++...+...-..+...+.....++.+|++|.+ ..+. +..+
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000 0112333333322211 2467779999999777777778888888887777777766665 4444 3345
Q ss_pred CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 323 STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 323 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
....+.+.+++++++.+.+.... + . . .+.+..++..++|.|..+..
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~-~--~-----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T-M--S-----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C-C--C-----HHHHHHHHHHcCCCHHHHHH
Confidence 56788999999999988886531 1 1 1 23366789999999975443
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=2.5e-05 Score=68.18 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=75.7
Q ss_pred ChhhcCcCCcceEEcCCCCCCcccccccC-CCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcC
Q 042509 565 PKEIENFMYLRFLKLSKAEIVELPETCCE-LFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTC 643 (892)
Q Consensus 565 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~ 643 (892)
+..+.+..+|...+|++|.++.+|+.+.. .+.+++|++.+|. +.++|..+..++.|+.|+++.|.+...|.-+..|.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 34456778888999999999999988765 4589999999988 899999999999999999999999999988888888
Q ss_pred CCcCCceEecc
Q 042509 644 LRTLSEFVVSR 654 (892)
Q Consensus 644 L~~L~l~~~~~ 654 (892)
|-.|+...|..
T Consensus 125 l~~Lds~~na~ 135 (177)
T KOG4579|consen 125 LDMLDSPENAR 135 (177)
T ss_pred HHHhcCCCCcc
Confidence 88888666544
No 187
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.0008 Score=73.88 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=86.7
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
.++.|.+.+++++.+.+.-+-.. +-...+.+.++|++|.|||++|+.+++ .....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-----
Confidence 35789999999988877422100 012345688999999999999999998 344333 1121111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC------c--CC------hhhhhhhcCC--CCCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD------R--TK------WEPLNHCLMN--GQCG 305 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~------~--~~------~~~l~~~l~~--~~~g 305 (892)
+.. ...+ .........+.....+.+.+|+||++..-- . .. ...+...+.. ...+
T Consensus 253 -L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1100 011111122222334677899999974210 0 00 1112112211 1235
Q ss_pred cEEEEEcCchhHHhh-c----cCCceEeCCCCCHHHHHHHHHHHhh
Q 042509 306 SKILVTTRKETVSRM-M----ESTNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 306 s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
..||.||...+.... + .-...+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888875433222 1 1245788999999999999987653
No 188
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00058 Score=70.02 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=56.3
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.++|.+|+|||.||..+.+. .......++|+.+ .+++..+..... ....+... +.+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l----~~l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAI----AKLD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHH----HHHh-cC
Confidence 35899999999999999999883 3333334566643 445555533211 11222222 2222 33
Q ss_pred EEEEEecCCCCCcCChh--hhhhhcCCCCCCcEEEEEcCch
Q 042509 277 FLLVLDDVWNDDRTKWE--PLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 315 (892)
=|||+||+.......|. .+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654444442 2333333211123588888753
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0023 Score=77.67 Aligned_cols=138 Identities=19% Similarity=0.278 Sum_probs=79.8
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|.+..++.+...+..... +......++.++|+.|+|||++|+.+... ....-...+.+.++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4689999999999998875321 01123467889999999999999999873 2222223444555542221111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhc-CCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcC
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIA-KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTR 313 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 313 (892)
..+.+.++.....++ ...+.+.++ ....+|+||++...++..+..+...+..+. ..+-||+||.
T Consensus 641 ---~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred ---HHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 112121111111110 112333332 233489999998888888888887775441 2344777776
Q ss_pred c
Q 042509 314 K 314 (892)
Q Consensus 314 ~ 314 (892)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 4
No 190
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=0.0001 Score=71.98 Aligned_cols=13 Identities=31% Similarity=0.138 Sum_probs=8.1
Q ss_pred cCCccceeeeccc
Q 042509 853 IMPQLNSLEIILC 865 (892)
Q Consensus 853 ~lp~L~~L~i~~c 865 (892)
++|-|..|.+++|
T Consensus 301 ~~p~L~~le~ngN 313 (388)
T COG5238 301 AVPLLVDLERNGN 313 (388)
T ss_pred ccHHHHHHHHccC
Confidence 5666666666665
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.26 E-value=0.00066 Score=68.73 Aligned_cols=102 Identities=24% Similarity=0.196 Sum_probs=58.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.++|.+|+|||+||..+++. .......++++++. +++..+-..... ..... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cC
Confidence 357899999999999999999994 44444456777553 344444333211 11111 222333 34
Q ss_pred eEEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 276 KFLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
-=||||||+.......|.. +...+.. -...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5689999996544455643 3333332 1223347888863
No 192
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.24 E-value=0.00036 Score=67.14 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
..-+.++|..|+|||.||..+.+. ...+=..+.|+.+ .+++..+-.. . .....+.. .+.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l~~~----~-~~~~~~~~----~~~l~~- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDELKQS----R-SDGSYEEL----LKRLKR- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHHHCC----H-CCTTHCHH----HHHHHT-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceecccccc----c-cccchhhh----cCcccc-
Confidence 356999999999999999999884 3222234667653 3455444322 1 11222222 223332
Q ss_pred eEEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 276 KFLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
-=|+||||+-......|.. +...+.. -..+ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3478899996554445533 2222221 1123 58888874
No 193
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.23 E-value=0.0033 Score=68.70 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
.++.|.+..++++.+.+..+-. -+-...+-+.++|++|.|||++|+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4689999999888877642110 01123567889999999999999999983 33232 12211 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC------cC----C----hhhhhhhcCC--CCCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD------RT----K----WEPLNHCLMN--GQCG 305 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~------~~----~----~~~l~~~l~~--~~~g 305 (892)
.+ .....+ .....+...+.......+.+|++|++..-- .. . +..+...+.. ...+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111111 011111222222334678899999984210 00 0 1122222221 2235
Q ss_pred cEEEEEcCchhHH-hh-cc---CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 306 SKILVTTRKETVS-RM-ME---STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 306 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
..||.||...+.. .. .. -...+++...+.++..++|..+.... .....-++. ++++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-NLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-CCCcccCHH----HHHHHcCCCC
Confidence 6788888754322 11 11 24568888888999888888665322 111122333 4566665543
No 194
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0022 Score=77.43 Aligned_cols=138 Identities=16% Similarity=0.238 Sum_probs=77.7
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|.+..++.+...+..... +......++.++|+.|+|||++|+.+.+. ....-...+.+.++.... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4689999999999888864321 01123457889999999999999999873 221222344455443211 1
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcC-CeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcC
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAK-KKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTR 313 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 313 (892)
.....+.+.++.....++ ...+.+.++. ..-+|+||++...++..+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 111222222211111111 1123333322 23599999997777777777777665431 2233777887
Q ss_pred c
Q 042509 314 K 314 (892)
Q Consensus 314 ~ 314 (892)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.22 E-value=0.0029 Score=75.58 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=72.0
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|-+..++.+...+..... +......++.++|+.|+|||+||+.+... . +...+.+++++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4578999888988888764211 01123457899999999999999999872 3 23345565554222111
Q ss_pred HHHHhccCCCC--CCCCHHHHHHHHHHHhc-CCeEEEEEecCCCCCcCChhhhhhhcCCC
Q 042509 246 SIIEGLEGETS--NLGSLQSYLLRIYEAIA-KKKFLLVLDDVWNDDRTKWEPLNHCLMNG 302 (892)
Q Consensus 246 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~-~kr~LlVlDd~w~~~~~~~~~l~~~l~~~ 302 (892)
+.+.++.... ....... +.+.++ ...-+|+||+++...++.+..+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1111211111 1111222 333333 33459999999887777787777776543
No 196
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.00051 Score=68.35 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV 234 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 234 (892)
-.++|+|..|+|||||+..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3688999999999999999988 46778877766643
No 197
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0022 Score=71.10 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=120.4
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
++||-+.-...|...+....- .+--...|.-|+||||+|+-+..-- .+ .-| ....++.....-++|-.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~Akal----NC--~~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKAL----NC--ENG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHh----cC--CCC-CCCCcchhhhhhHhhhc
Confidence 579999999999999876542 4556778999999999998887621 11 111 22233444444455544
Q ss_pred hccCC-------C-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hH-H
Q 042509 250 GLEGE-------T-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TV-S 318 (892)
Q Consensus 250 ~l~~~-------~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v-~ 318 (892)
.-..+ + ...++..++.+.+.-. .+++--+.|+|.|+--....|..+..-+.........|++|.+. .+ .
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 31000 0 0112222222222111 24566689999998888889999988888777777777766653 33 3
Q ss_pred hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH
Q 042509 319 RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL 373 (892)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 373 (892)
+..+.+..|.++.++.++-...+...+..+.-..+ .+...-|++..+|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 34566789999999999999999887754443322 4455667888887665
No 198
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=0.00029 Score=68.97 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=50.0
Q ss_pred cccceEEEEEeCCCCC-----ccccccCCCcceEEEecCC------------ccccChhhcCcCCcceEEcCCCCCC-cc
Q 042509 526 MEKLRHFMLVLGKSVA-----FPVSIFKARKLRSLLIVGP------------ICEIPKEIENFMYLRFLKLSKAEIV-EL 587 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~-----~p~~~~~~~~Lr~L~l~~~------------~~~lp~~i~~l~~L~~L~L~~~~i~-~l 587 (892)
+..+..+++++|.+.. +...+.+-++||..+++.- +.-+...+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667778888887642 3344556677777776651 1122334556777777777777765 33
Q ss_pred c----ccccCCCCCCEEeccCcC
Q 042509 588 P----ETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 588 p----~~i~~L~~L~~L~L~~~~ 606 (892)
| +.|++-.+|.+|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 3 235566677777777665
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00013 Score=85.05 Aligned_cols=128 Identities=24% Similarity=0.204 Sum_probs=86.6
Q ss_pred cccceEEEEEeCCCC--Cccccc-cCCCcceEEEecCCc---cccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCE
Q 042509 526 MEKLRHFMLVLGKSV--AFPVSI-FKARKLRSLLIVGPI---CEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQT 599 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~--~~p~~~-~~~~~Lr~L~l~~~~---~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 599 (892)
..++++|++++...- .=|..+ .-+|+||+|.+.+.. ..+..-..++++|++||+|+++++.+ ..++.|+|||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 457778888764321 112222 347999999998842 22334457899999999999999988 78999999999
Q ss_pred EeccCcCCcccc--chhhhccccCCeecccccccccccc-------cccCCcCCCcCCceEeccC
Q 042509 600 LEMEDCCNLKRL--PQEIGKLVNLRYLIYNDSYLHYLPR-------GIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 600 L~L~~~~~~~~l--p~~i~~l~~L~~L~~~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~~ 655 (892)
|.+++=. ...- -..+-+|++|++|+++...-..-+. --..|++|+.||.+++...
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988643 2221 1356789999999776644332221 1124889999998876554
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.19 E-value=0.0027 Score=60.85 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++||-++.++++.-...+. +..-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH
Confidence 46999999999887665433 467899999999999998877776
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0047 Score=65.66 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=67.3
Q ss_pred cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhHH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCC
Q 042509 273 AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRS 350 (892)
Q Consensus 273 ~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 350 (892)
.+++-++|+|+++..+...+..+...+....+++.+|++|.+ ..+. +..+....+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 356668999999888888888999999887777766655554 4443 334556789999999999999887641 1
Q ss_pred CCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 351 PSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 351 ~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
. + ...++..++|.|..+..+
T Consensus 206 -~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755544
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=97.17 E-value=0.00015 Score=69.09 Aligned_cols=34 Identities=32% Similarity=0.641 Sum_probs=27.0
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhh-cccceeEE
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVR-NHFKIRMW 231 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 231 (892)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999999999854333 45676765
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.14 E-value=0.0087 Score=61.93 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=70.6
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH------------HhccCCCCC-CCCHHHH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII------------EGLEGETSN-LGSLQSY 264 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~------------~~l~~~~~~-~~~~~~~ 264 (892)
-|.+.|.+|+|||++|+.+.+ .... ..+++++....+..+++.... ......... ...+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 467999999999999999986 2322 244566666555555443221 000000000 00000
Q ss_pred HHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC----------------CCCcEEEEEcCchhHHh-------hc
Q 042509 265 LLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG----------------QCGSKILVTTRKETVSR-------MM 321 (892)
Q Consensus 265 ~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~----------------~~gs~iivTtr~~~v~~-------~~ 321 (892)
...+....+ +...+++|++...+++.+..+...+..+ .++.+||+|+....-+. ..
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 001122122 3468899999766666666566555321 13567888887532110 01
Q ss_pred cCCceEeCCCCCHHHHHHHHHHH
Q 042509 322 ESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
.....+.+...+.++-.+++.++
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hhcEEEECCCCCHHHHHHHHHHh
Confidence 11224455555555555555544
No 204
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.14 E-value=0.0012 Score=69.52 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=70.2
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhcc
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLE 252 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 252 (892)
+|........+++..-.. ....+-+.++|..|+|||.||..+++. ....-..+.|++++ +++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555555543221 113457999999999999999999994 33322345666653 44555544432
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhh--hhhhc-CCC-CCCcEEEEEcC
Q 042509 253 GETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEP--LNHCL-MNG-QCGSKILVTTR 313 (892)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr 313 (892)
. .+..+. + +.+ .+-=||||||+-.+....|.. +...+ ... ..+..+|+||.
T Consensus 205 ~-----~~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 D-----GSVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c-----CcHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 112222 2 223 245589999997766777864 43333 221 23556888886
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.00061 Score=64.02 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCC-CCCCCCeEEEcceEEEEe
Q 042509 742 NLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLG-KLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 742 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~l~~L~~L~L~~~~l~~~ 803 (892)
+...+++++|.+.. ++ .+..++.|..|.|.+|.+...-|.+. .+|+|..|.|.+|+|..+
T Consensus 43 ~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 44555555555443 22 23345555555555555555444433 245555555555554443
No 206
>CHL00176 ftsH cell division protein; Validated
Probab=97.09 E-value=0.0048 Score=71.44 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=94.7
Q ss_pred CceecchhhHHHHHHHH---hcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKL---LSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.+++|.++.++++.+.+ ..+.. -+....+-+.++|++|.|||+||+.++.. ... -|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccH----HH
Confidence 45888887666655543 32211 01122456899999999999999999883 221 2333321 11
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC----------cCChhh----hhhhcCC--CCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD----------RTKWEP----LNHCLMN--GQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~----------~~~~~~----l~~~l~~--~~~gs 306 (892)
+. .. ..+ .........+.......+.+|++||++.-. ...+.. +...+.. ...+.
T Consensus 252 f~-~~---~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV-EM---FVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH-HH---hhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 00 000 011222333444456778999999995310 011222 2222221 23455
Q ss_pred EEEEEcCchhHHh-hc-c---CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC
Q 042509 307 KILVTTRKETVSR-MM-E---STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG 370 (892)
Q Consensus 307 ~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 370 (892)
.||.||...+... .+ . -...+.+...+.++-.++++.++..... . .......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCC
Confidence 6777776543222 11 1 2357888888999999999887643211 1 12234567788777
No 207
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00065 Score=63.86 Aligned_cols=106 Identities=23% Similarity=0.234 Sum_probs=78.3
Q ss_pred CCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCC--C
Q 042509 702 KNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNC--E 779 (892)
Q Consensus 702 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~ 779 (892)
.+...++|++|.+. -...|..++.|.+|.+.+|.++.+-|.--.-+++|..|.|.+|.+. .
T Consensus 42 d~~d~iDLtdNdl~-----------------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-----------------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred cccceecccccchh-----------------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 35566777777653 2345667889999999999999844554447889999999999765 4
Q ss_pred cCCCCCCCCCCCeEEEcceEEEEeCC-cccCCCCCCCCCCCCCCCccceeecccc
Q 042509 780 IMPPLGKLPFLESLKIRNMNVKKVGD-EFLGIKSNHSSGPAIAFPKLKHLKFMKL 833 (892)
Q Consensus 780 ~~~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~~~n~~~~~~~~f~~L~~L~l~~l 833 (892)
.+..+..+|.|++|.+-+|+++.-.. ..+- .-.+|+|+.|++...
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv---------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYV---------LYKLPSLRTLDFQKV 150 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCceeEE---------EEecCcceEeehhhh
Confidence 56778999999999999998765332 1111 236788888888765
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.06 E-value=0.0015 Score=78.56 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=78.7
Q ss_pred CCceecchhhHHHHHHHHhcCC---cccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSES---SEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 244 (892)
...++|-+..++.+.+.+.... ........++.++|+.|+|||.||+.+... +-+.....+-+.++...+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 3468999999999998886421 111234568999999999999999888662 2111122222333221111
Q ss_pred HHHHHhccCCCCCC---CCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEE
Q 042509 245 KSIIEGLEGETSNL---GSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILV 310 (892)
Q Consensus 245 ~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iiv 310 (892)
.-...+-+.++.. .....+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+
T Consensus 639 -~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 -HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 1111222221111 111223333332 445799999998777777777777766542 3455777
Q ss_pred EcCc
Q 042509 311 TTRK 314 (892)
Q Consensus 311 Ttr~ 314 (892)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7764
No 209
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00017 Score=71.48 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.4
Q ss_pred cccccCcCCccceeeecccccCcCC
Q 042509 847 GKEEITIMPQLNSLEIILCAKLKSL 871 (892)
Q Consensus 847 ~~~~~~~lp~L~~L~i~~c~~L~~l 871 (892)
....+..||.|..|.+.++|-+..+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccc
Confidence 4445566777777777777765544
No 210
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=60.37 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=103.3
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
.++-|-++++++|.+.+.-+-.. +-..++-|.+||++|.|||-||++|++ +....| +-|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc-----
Confidence 45788899999998877543210 123467789999999999999999999 444444 22221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc-CCeEEEEEecCCCC-----------CcCChh---hhhhhcCCC--CC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA-KKKFLLVLDDVWND-----------DRTKWE---PLNHCLMNG--QC 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDd~w~~-----------~~~~~~---~l~~~l~~~--~~ 304 (892)
.++++..-+ +-..+...+.+..+ ..+..|++|.++.. +.+.-. ++..-+... ..
T Consensus 219 ---SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 ---SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 122222211 11234444444443 55789999998431 111111 222223222 33
Q ss_pred CcEEEEEcCchhHHhh--c--c-CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch----HHH
Q 042509 305 GSKILVTTRKETVSRM--M--E-STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP----LAA 375 (892)
Q Consensus 305 gs~iivTtr~~~v~~~--~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P----lai 375 (892)
.-|||.+|...++... + | -.+.+++..-+.+.-.++|+-++- .....+.-+++. |++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 5689998875544321 1 2 255777774445555666665552 233233334444 666666654 344
Q ss_pred HHHhhhhc
Q 042509 376 KTIGSLLC 383 (892)
Q Consensus 376 ~~~~~~l~ 383 (892)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 45555543
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.03 E-value=0.011 Score=67.60 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=91.8
Q ss_pred CceecchhhHHHHHHHHh---cCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLL---SESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++++.+.+. .... .+....+-+.++|++|.|||+||+.+++. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 468898877766655443 2110 00122345889999999999999999883 2222 233221 11
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC----------cCChhh----hhhhcC--CCCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD----------RTKWEP----LNHCLM--NGQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~----------~~~~~~----l~~~l~--~~~~gs 306 (892)
+.. ...+ .....+...+.......+.+|++||++.-. ...+.. +...+. ....+.
T Consensus 124 ~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1100 111222233333344567899999994310 011111 222221 122345
Q ss_pred EEEEEcCchh-HHhhc----cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 307 KILVTTRKET-VSRMM----ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 307 ~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
.||.||.... +-..+ .-...+.+...+.++..++|..+...... ....+ ...+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 5666775543 11111 12457888888998889999876633221 11112 34677777773
No 212
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0012 Score=67.52 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=53.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.++|++|+|||+||..+..... +..+ .+.|+ +..+++..+..... ..... ..+.+ + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----AGRLQ---AELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHH-h-ccC
Confidence 4689999999999999999987422 2222 33443 33344444433211 11111 22222 2 234
Q ss_pred EEEEEecCCCCCcCChh--hhhhhcCC-CCCCcEEEEEcCch
Q 042509 277 FLLVLDDVWNDDRTKWE--PLNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 315 (892)
-+||+||+.......|. .+...+.. ...++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999644333332 23333322 12244 88888753
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.0019 Score=66.47 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=52.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.|+|++|+|||+||..+.... ...-..+.++. ..++...+...... .. ....+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 468899999999999999997732 22222344443 23344333222111 11 112222222 344
Q ss_pred EEEEEecCCCCCcCChh--hhhhhcCC-CCCCcEEEEEcCc
Q 042509 277 FLLVLDDVWNDDRTKWE--PLNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 314 (892)
-++|+||+.......+. .+...+.. -..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 59999999654333333 23333322 12344 8888864
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.0029 Score=63.93 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=58.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.++|.+|+|||+||..+++. ....-..++++++ .+++..+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 357899999999999999999994 3333345666643 3444444333211 111222 2333344 3
Q ss_pred eEEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 276 KFLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
.=+||+||+.......|+. +...+.. -...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665566664 3233321 1223457888863
No 215
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.002 Score=66.41 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcc-cceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNH-FKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
...+.++|..|+|||+||..+++. +... -..++|++.. +++..+.... +.... ..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~-~~~~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEA-KLNRMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHH-HHHHhc-
Confidence 457899999999999999999994 4333 3456777642 3333332221 11111 222232
Q ss_pred CeEEEEEecCCC-----CCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 275 KKFLLVLDDVWN-----DDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 275 kr~LlVlDd~w~-----~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
+-=||||||+.. +....|.. +...+.. ...+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22345543 4333322 1224458888863
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=96.98 E-value=0.012 Score=69.63 Aligned_cols=155 Identities=11% Similarity=0.022 Sum_probs=98.0
Q ss_pred cCCchHHHHHHHHhCChhhhcccc-eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEe
Q 042509 204 MGGIGKTTLAQMAYNDPDVRNHFK-IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLD 282 (892)
Q Consensus 204 ~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 282 (892)
+.++||||+|..++++- ....++ .++-++++...... ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999841 122222 35667777644444 333333332211100 01245799999
Q ss_pred cCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHH
Q 042509 283 DVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEI 360 (892)
Q Consensus 283 d~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 360 (892)
+++.-+......++..+......+++|++|.+. .+.. ..+.+..+++.+++.++....+...+....-.- -.+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 998777777888888887655566766666543 3332 234467899999999999988887664322111 1456
Q ss_pred HHHHHHhcCCchHHHHHH
Q 042509 361 GRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 361 ~~~i~~~c~G~Plai~~~ 378 (892)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 778999999988654443
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00038 Score=64.51 Aligned_cols=88 Identities=26% Similarity=0.226 Sum_probs=49.9
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhcCCeE
Q 042509 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-NLGSLQSYLLRIYEAIAKKKF 277 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~ 277 (892)
|.++|.+|+|||+||+.++. .... ...-+.++...+..+++...--. ..... ....+. ..+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~---~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLV---RAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCC---TTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccccccccccc---ccc-----ccee
Confidence 67999999999999999988 3321 23446777777777666533221 01100 000000 000 1788
Q ss_pred EEEEecCCCCCcCChhhhhhhcC
Q 042509 278 LLVLDDVWNDDRTKWEPLNHCLM 300 (892)
Q Consensus 278 LlVlDd~w~~~~~~~~~l~~~l~ 300 (892)
++|||++...+...+..+...+.
T Consensus 68 il~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHh
Confidence 99999997555555555555443
No 218
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.96 E-value=0.026 Score=60.54 Aligned_cols=203 Identities=12% Similarity=0.107 Sum_probs=119.7
Q ss_pred chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHH-HHHhCChhhhcccceeEEEEeCCC---CCHHHHHHHHHH
Q 042509 174 RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLA-QMAYNDPDVRNHFKIRMWVCVSDP---FDEFSVAKSIIE 249 (892)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~ 249 (892)
|.+..+.|..||....+ .+|.|.|+-|+||+.|+ .++..+.+ .++.+.+.+- .+-....+.++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999987764 69999999999999999 78777522 2555554332 223344444444
Q ss_pred hccCC-----------------------CCC-CCCHHHHHHH--------HHH-------------------Hhc---CC
Q 042509 250 GLEGE-----------------------TSN-LGSLQSYLLR--------IYE-------------------AIA---KK 275 (892)
Q Consensus 250 ~l~~~-----------------------~~~-~~~~~~~~~~--------l~~-------------------~l~---~k 275 (892)
+++.- ... .++.+..... |++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 44321 111 1222221111 221 010 23
Q ss_pred eEEEEEecCCCCCc---CChhhhh---hhcCCCCCCcEEEEEcCchhHHh----hccC--CceEeCCCCCHHHHHHHHHH
Q 042509 276 KFLLVLDDVWNDDR---TKWEPLN---HCLMNGQCGSKILVTTRKETVSR----MMES--TNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 276 r~LlVlDd~w~~~~---~~~~~l~---~~l~~~~~gs~iivTtr~~~v~~----~~~~--~~~~~l~~L~~~~~~~lf~~ 343 (892)
|-+||+|++-.... ..|+.+. ..+-. .+=.+||++|-+..... .+.. .+.+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 67999999853211 1122221 11222 23457888887654433 3322 45788999999999999988
Q ss_pred HhhCCCCC------------CCC----chHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHH
Q 042509 344 LAFFGRSP------------SEC----ENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEE 389 (892)
Q Consensus 344 ~~~~~~~~------------~~~----~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~ 389 (892)
........ ... .....-....++..||--.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 76432110 000 12333345678888999999999999998876554
No 219
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.95 E-value=0.026 Score=60.87 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 175 DDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+++.+.
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455677777776531 35789999999999999999999884
No 220
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.94 E-value=0.0029 Score=69.29 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=82.8
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH-H
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI-I 248 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-~ 248 (892)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|... -+..+ .+.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHHH
Confidence 58999999999999988765 48999999999999999998732212233211 01111 122332221 1
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcC---CeEEEEEecCCCCCcCChhhhhhhcCCCC---------CCcEEEEEcCchh
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAK---KKFLLVLDDVWNDDRTKWEPLNHCLMNGQ---------CGSKILVTTRKET 316 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDd~w~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~~~ 316 (892)
...... . ...+...| .--++++|+++...+.....+...+.... -..++++++.++
T Consensus 89 ~~~~~~----g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~- 156 (498)
T PRK13531 89 QALKDE----G-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE- 156 (498)
T ss_pred hhhhhc----C-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-
Confidence 111000 0 01111111 11289999999877766666766663221 122454444442
Q ss_pred HHh-------hccC-CceEeCCCCCHH-HHHHHHHHH
Q 042509 317 VSR-------MMES-TNVMFIEELSES-ECWRLFQQL 344 (892)
Q Consensus 317 v~~-------~~~~-~~~~~l~~L~~~-~~~~lf~~~ 344 (892)
... .+.. .-.+.+.+++.+ +-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1111 236778899754 447777653
No 221
>PRK04296 thymidine kinase; Provisional
Probab=96.93 E-value=0.0017 Score=63.45 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=62.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhcC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSN--LGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 274 (892)
.++.|+|..|.||||+|..... +...+-..++.+. ..++.+.....++++++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999988887 3433333333331 2223232234455555432211 2234445555554 334
Q ss_pred CeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh
Q 042509 275 KKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET 316 (892)
Q Consensus 275 kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 316 (892)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432212122232222 345778999998754
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.001 Score=70.46 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=56.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
..+.++|..|+|||+||..+++. ....-..++|+++. +++..+...-.. ...+.... .+.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~~----~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN---NDKELEEV----YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc---cchhHHHH----HHHhc-cC
Confidence 56999999999999999999994 33333356777543 333333221110 11111111 22232 22
Q ss_pred EEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 277 FLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
=||||||+.......|.. +...+.. ...+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996654445533 3333332 1234568888874
No 223
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.0018 Score=62.10 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEEEEecCCchHHHHHHHHhCChhh-hcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDV-RNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
.|.|+|++|+||||||+++.....+ .-+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4889999999999999998763211 123344444211 112234556666666776666
Q ss_pred EEEEEecCC
Q 042509 277 FLLVLDDVW 285 (892)
Q Consensus 277 ~LlVlDd~w 285 (892)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778874
No 224
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.89 E-value=0.0048 Score=65.37 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=64.8
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccce-eEEEEeCC-CCCHHHHHHHHHHhccC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFKI-RMWVCVSD-PFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~ 253 (892)
-..++++.+..-. ...-+.|+|.+|+|||||++++.+. +.. +-+. ++|+.+.+ ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777776432 2345699999999999999998883 332 2244 46777766 45677888888777765
Q ss_pred CCCCCCCHH-----HHHHHHHHHh--cCCeEEEEEecC
Q 042509 254 ETSNLGSLQ-----SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 254 ~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...+..... .....+.+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 443222221 1222233333 689999999999
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.87 E-value=0.0033 Score=76.08 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=78.6
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|-+..++.+...+..... +.......+.++|+.|+|||+||+.+.+. +-..-...+-+..+...+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 5689999999999888763221 11223456778999999999999988772 211112334444444222211111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCCe-EEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcC
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAKKK-FLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTR 313 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 313 (892)
+.+.++.....++ ...+.+.++.++ -+|+||++...+++.+..+...+..+. ..+-||+||.
T Consensus 587 -----l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 587 -----LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred -----hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 1111111111110 112344444444 589999998878888888887776542 3455677776
Q ss_pred c
Q 042509 314 K 314 (892)
Q Consensus 314 ~ 314 (892)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0021 Score=65.64 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=49.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
..-+.++|.+|+|||.||.++.+. +...--.+.++++ .+++.++...... .....++.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHhh-c
Confidence 346899999999999999999995 4333234666654 3455555544432 112222333222 2
Q ss_pred eEEEEEecCCCCCcCChh
Q 042509 276 KFLLVLDDVWNDDRTKWE 293 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~ 293 (892)
-=|+||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 338999999765555665
No 227
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.0045 Score=59.96 Aligned_cols=122 Identities=21% Similarity=0.323 Sum_probs=71.9
Q ss_pred cCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 166 IDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
++-..++|.+...+.+++--..-.. ....--|.++|.-|.||++|++++.+ .+....-. -|.|..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k--------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK--------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH---------
Confidence 3445689999999988764432111 11245688999999999999999998 44444322 222221
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCC-CCCcCChhhhhhhcCCC---CCCcEEEEEcCc
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVW-NDDRTKWEPLNHCLMNG---QCGSKILVTTRK 314 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w-~~~~~~~~~l~~~l~~~---~~gs~iivTtr~ 314 (892)
.+..++..+...|+. ...||+|..||+- +++...+..+.+.+..+ .+..-++.+|.+
T Consensus 122 ----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111122222222221 4679999999984 33445677777777643 334444444543
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0037 Score=62.54 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=36.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..+++.|+|.+|+|||+++.++... ....-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4689999999999999999998773 333456789999875 66655544
No 229
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0057 Score=66.10 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=86.1
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-------------------ccceeE
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-------------------HFKIRM 230 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 230 (892)
.++|-+....++..+...... ..+.+.++|++|+||||+|..+.+.-.-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467778888888888875431 234599999999999999988887311000 112344
Q ss_pred EEEeCCCCC---HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcE
Q 042509 231 WVCVSDPFD---EFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSK 307 (892)
Q Consensus 231 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ 307 (892)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 23333333333222110 36678999999976665566667777777777888
Q ss_pred EEEEcCc-hhHHhh-ccCCceEeCCC
Q 042509 308 ILVTTRK-ETVSRM-MESTNVMFIEE 331 (892)
Q Consensus 308 iivTtr~-~~v~~~-~~~~~~~~l~~ 331 (892)
+|++|.. ..+... -+.+..+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 8888873 233322 23355677776
No 230
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0091 Score=70.55 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=70.5
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|-++.++.+.+.+..... +.......+.++|++|+|||++|+.+... .. ...+.++++.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc---
Confidence 3579999999999888763211 01223567899999999999999999773 32 2234445443222111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhc-CCeEEEEEecCCCCCcCChhhhhhhcCCC
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIA-KKKFLLVLDDVWNDDRTKWEPLNHCLMNG 302 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDd~w~~~~~~~~~l~~~l~~~ 302 (892)
+ ..+.+.+......+ ....+.+.++ ...-+|+||++....++.+..+...+..+
T Consensus 530 -~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 -V-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred -H-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1 12212111110000 0112333333 33469999999877777777777766543
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.72 E-value=0.0015 Score=68.92 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=41.6
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+++|.++.++++++++...........+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997644322234689999999999999999999884
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.72 E-value=0.0072 Score=61.20 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=35.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 243 (892)
...++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4679999999999999999998873 33334678999887 5555443
No 233
>PHA00729 NTP-binding motif containing protein
Probab=96.71 E-value=0.013 Score=57.70 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999883
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.68 E-value=0.0089 Score=68.35 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=35.9
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999988775443 34568999999999999999976
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.011 Score=62.70 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=47.5
Q ss_pred CCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHhh-ccCCceEeCCCCCHHHHHHHHHH
Q 042509 274 KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSRM-MESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
+++-++|+|++..-+...-..+...+.....+..+|++|.+. .+... .+....+.+.+++.+++.+.+..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 455566778887666666666777776554556677777654 34332 23466899999999999888865
No 236
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.62 E-value=0.031 Score=51.29 Aligned_cols=83 Identities=7% Similarity=0.170 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhcc-cCcHHHHHHHHHHHHhhhchhhHH
Q 042509 2 VDAIVSAVLERLISTTVGEAEEQVRLVVGVEQDVEKLKRNFRAIQAVLVDAEQKQ-VKEETVRLWLDQLKDASYDMEDVL 80 (892)
Q Consensus 2 a~~~~s~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~-~~~~~~~~wl~~lr~~ayd~ed~l 80 (892)
||.+++|+++.+++.+...+.+.......++.-+++|...++.+..++++.+... .-+..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999999999999999999999999999998753 223333677889999999999999
Q ss_pred HHHH
Q 042509 81 DEWI 84 (892)
Q Consensus 81 D~~~ 84 (892)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 9875
No 237
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.60 E-value=0.026 Score=57.66 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=97.5
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH-HHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF-SVAKSII 248 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~ 248 (892)
.++|-.++..++-.++..... .+...-|.|+|+.|.|||+|...+..+ .+..=+...-|........+ -.+++|.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 588999988888888764321 122345789999999999999888886 22222334445554443332 3466666
Q ss_pred HhccCC----CCCCCCHHHHHHHHHHHhc------CCeEEEEEecCCCCCcCChhhh-hhhcC----CCCCCcEEEEEcC
Q 042509 249 EGLEGE----TSNLGSLQSYLLRIYEAIA------KKKFLLVLDDVWNDDRTKWEPL-NHCLM----NGQCGSKILVTTR 313 (892)
Q Consensus 249 ~~l~~~----~~~~~~~~~~~~~l~~~l~------~kr~LlVlDd~w~~~~~~~~~l-~~~l~----~~~~gs~iivTtr 313 (892)
+++... .....+..+-...+...|+ +-++++|+|.++-.-+..-..+ ...|. ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 665432 1122333344444444442 3357888887743211111111 11121 2345667888999
Q ss_pred chh-------HHhhccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 314 KET-------VSRMMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 314 ~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
-.. |-...+...++-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 643 33333333355567788888888888765
No 238
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0037 Score=60.56 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=28.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEE
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWV 232 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 232 (892)
...+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 555555555555
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.56 E-value=0.00098 Score=61.52 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=61.0
Q ss_pred ecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-hcccceeEEEEeCCCCCHHHHHHHHHHh
Q 042509 172 CGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-RNHFKIRMWVCVSDPFDEFSVAKSIIEG 250 (892)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 250 (892)
||....++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|..+ .+... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH-
Confidence 5777777887777754321 2346799999999999999988884221 1112110 11110 0 11111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCch
Q 042509 251 LEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 251 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~ 315 (892)
.. +.--++|+|+..-+......+...+.. .....|+|.||...
T Consensus 67 --------------------~a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 --------------------QA--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------------HC--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------------Hc--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11 333577899966555555666666653 35677999998743
No 240
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.089 Score=57.05 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=85.8
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
.+..-+.+.|++|+|||+||.++..+ ..|+.+=-++-..-... .+............+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHhhc
Confidence 45778889999999999999999773 45765433321110000 011111222233334456
Q ss_pred CCeEEEEEecCCCCCcCChhh------------hhhhcCCC-CCCcE--EEEEcCchhHHhhccC----CceEeCCCCCH
Q 042509 274 KKKFLLVLDDVWNDDRTKWEP------------LNHCLMNG-QCGSK--ILVTTRKETVSRMMES----TNVMFIEELSE 334 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~~~~------------l~~~l~~~-~~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~~ 334 (892)
..--.||+||+. ..-+|-. +...+... ..|-| |+-||....|.+.|+- ...|.+..++.
T Consensus 597 S~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 677899999993 3334432 22233322 23444 5557777778877764 34788888887
Q ss_pred -HHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhc
Q 042509 335 -SECWRLFQQLAFFGRSPSECENLEEIGRKIVHKC 368 (892)
Q Consensus 335 -~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 368 (892)
++..+.++..-. -.+.+...++++...+|
T Consensus 675 ~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 777777765431 11224455666777666
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.50 E-value=0.015 Score=58.99 Aligned_cols=88 Identities=15% Similarity=0.063 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhccc------ceeEEEEeCCCCCHHHHHHHHHHhccCCC---------CCCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF------KIRMWVCVSDPFDEFSVAKSIIEGLEGET---------SNLG 259 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~ 259 (892)
...++.|+|.+|+|||+||.+++.. ....- ..++|+.....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4579999999999999999988763 22222 467899887777765543 3333322110 1123
Q ss_pred CHHHHHHHHHHHh----cCCeEEEEEecCC
Q 042509 260 SLQSYLLRIYEAI----AKKKFLLVLDDVW 285 (892)
Q Consensus 260 ~~~~~~~~l~~~l----~~kr~LlVlDd~w 285 (892)
+.+++...+.+.. ..+.-+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4455555555443 2345589999983
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.028 Score=61.87 Aligned_cols=178 Identities=16% Similarity=0.198 Sum_probs=96.5
Q ss_pred CceecchhhHHHHHHHHhcCCcc------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.++-|.+..+.++.+++..-..+ +-...+-|.++|++|.|||.||+++... ..-.| +.++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isA------ 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISA------ 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecc------
Confidence 46888999888888776542211 1124567889999999999999999994 33333 33332
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc-CCh----------hhhhhhcCC---C-CCCcE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR-TKW----------EPLNHCLMN---G-QCGSK 307 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~-~~~----------~~l~~~l~~---~-~~gs~ 307 (892)
-+|+.+..+ ++.+.+.+...+.-..-++++++|+++...+ .+| .++...+.. . ..|-.
T Consensus 257 --peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 257 --PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred --hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 123333322 2233333334444567799999999953211 122 234433332 1 12333
Q ss_pred EEE---EcCchhHHhh---ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 308 ILV---TTRKETVSRM---MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 308 iiv---Ttr~~~v~~~---~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
|+| |+|...+-.. .+. .+-+.+.--++..-.+++...+-+-.... .-++ ++|++..-|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDF----KQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCH----HHHHhcCCCc
Confidence 333 4454433222 222 44667777677777777776664333222 2233 3456665553
No 243
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.48 E-value=0.012 Score=59.24 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=32.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD 239 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 239 (892)
...++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4689999999999999999998873 323334678887655443
No 244
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.46 E-value=0.0042 Score=59.06 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=66.2
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHh
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEG 250 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 250 (892)
+||.+..+.++.+.+..-.. ...-|.|+|..|.||+.+|+.+.+... ..-..-+-|+++. .+.+.+-..++-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888887765432 123567999999999999999998421 1112233445543 3444444444433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC------C-----CCcEEEEEcCc
Q 042509 251 LEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG------Q-----CGSKILVTTRK 314 (892)
Q Consensus 251 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr~ 314 (892)
-.+......... ...+.. . ..=-|+||++..-....-..+...+..+ . ...|||.||..
T Consensus 74 ~~~~~~~~~~~~--~G~l~~-A--~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLEQ-A--NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEB--EHHHHH-T--TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccc--CCceee-c--cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 222111111100 011111 1 2225778888654444444455444321 1 25678888874
No 245
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.46 E-value=0.0019 Score=58.14 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
||.|+|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 246
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.031 Score=62.67 Aligned_cols=153 Identities=17% Similarity=0.079 Sum_probs=83.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHH----HHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLR----IYE 270 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----l~~ 270 (892)
....|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-. ....+..++. +.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~-------------------~~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD-------------------GSSLEKIQKFLNNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc-------------------chhHHHHHHHHHHHHHH
Confidence 346799999999999999999999543 4555566677766421 1122222222 334
Q ss_pred HhcCCeEEEEEecCCC------CCcCChhh----hhhhcC-----CCCCCcE--EEEEcCchh-HHhhccC----CceEe
Q 042509 271 AIAKKKFLLVLDDVWN------DDRTKWEP----LNHCLM-----NGQCGSK--ILVTTRKET-VSRMMES----TNVMF 328 (892)
Q Consensus 271 ~l~~kr~LlVlDd~w~------~~~~~~~~----l~~~l~-----~~~~gs~--iivTtr~~~-v~~~~~~----~~~~~ 328 (892)
.+...+-+|||||++. .+-.+|.. +..++. ....+.+ +|-|..... +...+.. ..+..
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 5667899999999842 11223322 111221 1233444 344443321 1111111 23677
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 329 IEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 329 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
|..+...+..++++...-..... ...+...-+..+|+|.
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGY 608 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCc
Confidence 88888888888887654221111 1122233377778774
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.41 E-value=0.013 Score=59.63 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=54.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc-ceeEEEEeCCCCC-HHHHHHHHHHhccCC-------CCCCCCHH----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF-KIRMWVCVSDPFD-EFSVAKSIIEGLEGE-------TSNLGSLQ---- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 262 (892)
-+-++|.|.+|.|||||++++++ ..+.+| +.++++-+.+... +.++..++...=... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999999 455455 4566777766543 445555554321110 11111111
Q ss_pred -HHHHHHHHHh--c-CCeEEEEEecC
Q 042509 263 -SYLLRIYEAI--A-KKKFLLVLDDV 284 (892)
Q Consensus 263 -~~~~~l~~~l--~-~kr~LlVlDd~ 284 (892)
...-.+.+++ + ++..|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223355666 4 89999999998
No 248
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.40 E-value=0.0093 Score=60.90 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcc----cceeEEEEeCCCCCHHHHHHHHHHhccCCC------------CCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNH----FKIRMWVCVSDPFDEFSVAKSIIEGLEGET------------SNL 258 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 258 (892)
...++.|+|.+|+|||+||.+++........ -..++|++....++..++.+ +++...... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999998753222221 35789999887776654433 333332211 011
Q ss_pred CCHHHHHHHHHHHh-cC-CeEEEEEecC
Q 042509 259 GSLQSYLLRIYEAI-AK-KKFLLVLDDV 284 (892)
Q Consensus 259 ~~~~~~~~~l~~~l-~~-kr~LlVlDd~ 284 (892)
.+.......+.+.+ +. +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 12223334444444 33 5678899988
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.39 E-value=0.017 Score=69.42 Aligned_cols=181 Identities=13% Similarity=0.066 Sum_probs=93.1
Q ss_pred CCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
-+++.|.+..++++.+++...-.. +-...+.+.++|++|+|||+||+.+++. ....| +.+..+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH-----
Confidence 345889999999988876432100 0123456889999999999999999883 32222 222211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc------C-----ChhhhhhhcCCC-CCCcEE
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR------T-----KWEPLNHCLMNG-QCGSKI 308 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~------~-----~~~~l~~~l~~~-~~gs~i 308 (892)
++ ..... ......+...+.......+.+|++|++..... . ....+...+... ..+..+
T Consensus 247 -~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 11100 01112222233333455678999999843110 0 112233333321 223334
Q ss_pred EE-EcCchh-HHhhcc----CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH
Q 042509 309 LV-TTRKET-VSRMME----STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL 373 (892)
Q Consensus 309 iv-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 373 (892)
+| ||.... +...+. -...+.+...+.++..+++....-.. ...... ....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcccc----CHHHHHHhCCCCCH
Confidence 44 454322 211111 13467788888888888888654221 111111 24567777877643
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.034 Score=62.12 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=40.3
Q ss_pred cccCCCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhccc
Q 042509 164 SFIDEDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF 226 (892)
Q Consensus 164 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 226 (892)
+.+.-+++-|-++-+.++.+.+.-+... +-...+-|..+|++|.|||++|+.+.+ .....|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 3334455667777777776555432110 123467889999999999999999999 344444
No 251
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.36 E-value=0.0066 Score=59.14 Aligned_cols=129 Identities=21% Similarity=0.212 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeC----CC--C---CHH--
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVS----DP--F---DEF-- 241 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~--~---~~~-- 241 (892)
.+..+-...++.|.. ..++.+.|++|.|||.||....-+.-..+.|+.++++--. +. + +..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 345556666677762 3589999999999999998877754445778877776311 10 0 000
Q ss_pred -----HHHHHHHHhccCCCCCCCCHHHHHHH------HHHHhcCC---eEEEEEecCCCCCcCChhhhhhhcCCCCCCcE
Q 042509 242 -----SVAKSIIEGLEGETSNLGSLQSYLLR------IYEAIAKK---KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSK 307 (892)
Q Consensus 242 -----~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ 307 (892)
.-+.+.+..+. .....+.+... -..+++|+ ..+||+|++.+..+.+ +...+.+.+.|||
T Consensus 76 ~~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~sk 148 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSK 148 (205)
T ss_dssp --TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-E
T ss_pred HHHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcE
Confidence 11111111111 11122222211 01234454 4599999996654444 4444666678999
Q ss_pred EEEEcCchh
Q 042509 308 ILVTTRKET 316 (892)
Q Consensus 308 iivTtr~~~ 316 (892)
||++--...
T Consensus 149 ii~~GD~~Q 157 (205)
T PF02562_consen 149 IIITGDPSQ 157 (205)
T ss_dssp EEEEE----
T ss_pred EEEecCcee
Confidence 999876443
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.016 Score=53.96 Aligned_cols=117 Identities=20% Similarity=0.051 Sum_probs=64.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe---CCCCCHHHHHHHHHHhcc-----CCC-CCCCCHH-----
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV---SDPFDEFSVAKSIIEGLE-----GET-SNLGSLQ----- 262 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~~~l~-----~~~-~~~~~~~----- 262 (892)
..|-|++..|.||||+|-...- +..++=..+.++.. ........+++.+ ..+. ... ....+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688888899999999976666 33333223444433 2233444444444 1110 000 0001111
Q ss_pred --HHHHHHHHHhc-CCeEEEEEecCCC---CCcCChhhhhhhcCCCCCCcEEEEEcCchh
Q 042509 263 --SYLLRIYEAIA-KKKFLLVLDDVWN---DDRTKWEPLNHCLMNGQCGSKILVTTRKET 316 (892)
Q Consensus 263 --~~~~~l~~~l~-~kr~LlVlDd~w~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 316 (892)
+.....++.+. ++-=|+|||++-. ......+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12222334443 4445999999832 223455667777777777788999999743
No 253
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0091 Score=60.23 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|.+-+++|.+.+..... ....+|+|.|.+|+||||||+++..
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHH
Confidence 366777888888765332 3578999999999999999999988
No 254
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.26 E-value=0.031 Score=55.52 Aligned_cols=208 Identities=11% Similarity=0.114 Sum_probs=115.1
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC----hhhhcccceeEEEEeCCC---------
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND----PDVRNHFKIRMWVCVSDP--------- 237 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~s~~--------- 237 (892)
+.++++....+....... ....+.++|+.|.||-|.+..+.+. .-.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 566777777776665522 3678999999999999987555443 112233445556543332
Q ss_pred ------------CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC-CeE-EEEEecCCCCCcCChhhhhhhcCCCC
Q 042509 238 ------------FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK-KKF-LLVLDDVWNDDRTKWEPLNHCLMNGQ 303 (892)
Q Consensus 238 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDd~w~~~~~~~~~l~~~l~~~~ 303 (892)
..-+-+.++|+++...... + ..++ +.| ++|+-.+..-..+.-..++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----i---------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----I---------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----h---------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1112233333333221110 0 0122 233 55666664433444455665555445
Q ss_pred CCcEEEEEcCc--hhHHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 042509 304 CGSKILVTTRK--ETVSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSL 381 (892)
Q Consensus 304 ~gs~iivTtr~--~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 381 (892)
..+|+|+...+ +-+...-+..-.+++...+++|....+.+.+..++-.- | .+++.+|+++++|.-.-+..+...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 56777664432 12222223345788999999999999988775443321 2 678999999999976544433333
Q ss_pred hccC----------CCHHHHHHhhhhcccc
Q 042509 382 LCFK----------RTEEEWQSILDSELWK 401 (892)
Q Consensus 382 l~~~----------~~~~~w~~~~~~~~~~ 401 (892)
++-+ -..-+|+-...+....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 3322 1235787777654433
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.26 E-value=0.0084 Score=61.85 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=71.2
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCCh-hhhccccee-EE---EEeCCCC-------
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDP-DVRNHFKIR-MW---VCVSDPF------- 238 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~-~w---v~~s~~~------- 238 (892)
+-+|..+..--+++|..++ ...|.+.|.+|.|||-||-++.-.. ..++.|..+ +. +.+++..
T Consensus 226 i~prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 3446666666777787664 7899999999999999995543321 123334322 22 2233221
Q ss_pred --CHHHHHHHHHHhccCCCCCCCCHHHHHHHH-H---------HHhcCC---eEEEEEecCCCCCcCChhhhhhhcCCCC
Q 042509 239 --DEFSVAKSIIEGLEGETSNLGSLQSYLLRI-Y---------EAIAKK---KFLLVLDDVWNDDRTKWEPLNHCLMNGQ 303 (892)
Q Consensus 239 --~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~---------~~l~~k---r~LlVlDd~w~~~~~~~~~l~~~l~~~~ 303 (892)
.+.--++.|..-+..-......-+...+.+ . .+.+|+ +-+||+|.+.+-.+. ++...+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhcc
Confidence 011112222221111000000001111111 1 123444 358999999665443 3555566778
Q ss_pred CCcEEEEEcCchh
Q 042509 304 CGSKILVTTRKET 316 (892)
Q Consensus 304 ~gs~iivTtr~~~ 316 (892)
.||||+.|--..+
T Consensus 377 ~GsKIVl~gd~aQ 389 (436)
T COG1875 377 EGSKIVLTGDPAQ 389 (436)
T ss_pred CCCEEEEcCCHHH
Confidence 8999999976443
No 256
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.23 E-value=0.02 Score=57.48 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=74.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-----CCCHHHHHHHHHHhccCCC------CCCCCHHH-
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-----PFDEFSVAKSIIEGLEGET------SNLGSLQS- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~- 263 (892)
..+++|||..|+||||+++.+..= . ..-...++..-.+ .....+...++++.++... +..-+-.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L--~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL--E-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC--c-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999982 2 2223333333211 1223344566666665432 12222223
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCC-CcCChhhhhhhcCC--CCCCcEEEEEcCchhHHhhccC
Q 042509 264 YLLRIYEAIAKKKFLLVLDDVWND-DRTKWEPLNHCLMN--GQCGSKILVTTRKETVSRMMES 323 (892)
Q Consensus 264 ~~~~l~~~l~~kr~LlVlDd~w~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 323 (892)
..-.+.+.+.-++-++|.|..-.. |...-.++...+.. ...|-..+..|.+-.+++.+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 334577788889999999987331 11222334443332 2346678888888887776543
No 257
>PRK13695 putative NTPase; Provisional
Probab=96.21 E-value=0.0055 Score=59.16 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
++|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.16 E-value=0.015 Score=56.30 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC--C-------------CCCCCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG--E-------------TSNLGS 260 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~-------------~~~~~~ 260 (892)
..+++|+|..|.|||||++.+..-.. .....+++.-. +.......+-+.+.. + ......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999988421 11222222110 111110011111100 0 001111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCC-CcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 261 LQSYLLRIYEAIAKKKFLLVLDDVWND-DRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 261 ~~~~~~~l~~~l~~kr~LlVlDd~w~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
-+...-.+.+.+-.++-++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 223334456666777889999998531 22223334444433223667888888776554
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.022 Score=54.76 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=60.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC--CCHHHHHHHHHHhccCCC--CC-------CCCHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP--FDEFSVAKSIIEGLEGET--SN-------LGSLQSY 264 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~--~~-------~~~~~~~ 264 (892)
..+++|+|..|.|||||.+.++.-. ......+++.-... ...... +..+..+.... .. ...-+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 4689999999999999999998842 12233333221100 011111 11000000000 00 0111222
Q ss_pred HHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 265 LLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 265 ~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
.-.+...+..++-++++|+-.. -|......+...+.....+..||++|.+.....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 2335566667778999999743 122233344444433223567888888766554
No 260
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.16 E-value=0.034 Score=54.82 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCC--CCCCcEEEEEcCchhHHhhcc
Q 042509 261 LQSYLLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMN--GQCGSKILVTTRKETVSRMME 322 (892)
Q Consensus 261 ~~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~ 322 (892)
-++..-.+.+.+-..+-+|+-|+--. -|...=+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34555678888888888999997521 122222334444443 234778999999999998643
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.15 E-value=0.031 Score=54.28 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=64.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE---eCCCCCHHHHHH------HHHHhccCCC------CCCCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC---VSDPFDEFSVAK------SIIEGLEGET------SNLGS 260 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~------~~~~~ 260 (892)
..+++|+|..|.|||||++.++... ......+++. +.. .+...... ++++.++... .....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998832 2233334332 211 12222111 1334333221 11122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCC-CC-CcEEEEEcCchhHH
Q 042509 261 LQSYLLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNG-QC-GSKILVTTRKETVS 318 (892)
Q Consensus 261 ~~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 318 (892)
-+...-.+.+.+...+-++++|+.-. -|....+.+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23334456667777888999999742 2223333444444332 22 56788888775543
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.15 E-value=0.024 Score=52.66 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=57.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
..+++|+|..|.|||||++.+..-.. .....+|+.-. ..+..-. +...-+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999988421 22333333210 0000000 0122233334456666677
Q ss_pred eEEEEEecCCC-CCcCChhhhhhhcCCCCCCcEEEEEcCchhHH
Q 042509 276 KFLLVLDDVWN-DDRTKWEPLNHCLMNGQCGSKILVTTRKETVS 318 (892)
Q Consensus 276 r~LlVlDd~w~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 318 (892)
+-++++|+.-. -|......+...+... +..||++|.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 78999999742 2333334444444432 24577777765544
No 263
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.019 Score=66.57 Aligned_cols=154 Identities=21% Similarity=0.288 Sum_probs=85.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCCh---hhhccc-ceeEEEEeCCCCCHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDP---DVRNHF-KIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~s~~~~~~~~~ 244 (892)
+.++||++|++++++.|..... + --.++|.+|+|||++|.-++..- .+-... +..++.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL----------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL----------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-----------
Confidence 4589999999999999987553 1 23468999999999886555520 111111 1122210
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC---------CcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND---------DRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
++..-+.+.. --.+.++..+.+.+.+ +.++..+++|.++.- ..+.-.-+..+|..+. -..|=-||-+
T Consensus 233 -D~g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 233 -DLGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred -cHHHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 1111111221 2244555555555555 345899999998641 1222222444444432 2224445543
Q ss_pred hhHHhh-------ccCCceEeCCCCCHHHHHHHHHH
Q 042509 315 ETVSRM-------MESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 315 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
+ --.. ......+.+..-+.+++..+++-
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 2 2111 12345778888888888888864
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.037 Score=59.03 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=48.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
+.++|+++|.+|+||||++.+++.. ....=..+..+..... ....+-++...+.++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999999873 3222123445554321 122233333333333322222344555554444322
Q ss_pred C-CeEEEEEecCC
Q 042509 274 K-KKFLLVLDDVW 285 (892)
Q Consensus 274 ~-kr~LlVlDd~w 285 (892)
. +.=+|++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 23467788774
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.14 E-value=0.016 Score=60.88 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 269 (892)
..+++-|+|.+|+||||||.+++.. ....-..++|+...+.++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4679999999999999999888773 33333567898877665553 233343221 12334556655555
Q ss_pred HHhc-CCeEEEEEecC
Q 042509 270 EAIA-KKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l~-~kr~LlVlDd~ 284 (892)
...+ +..-+||+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5443 55679999998
No 266
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.02 Score=54.92 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=64.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC---hhhhcc---cc--eeEEEEeCCCCCHHHHHHHHHHhccCCCC------CCCC-
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND---PDVRNH---FK--IRMWVCVSDPFDEFSVAKSIIEGLEGETS------NLGS- 260 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~- 260 (892)
..+++|+|+.|+|||||.+.+..+ .++... |. .+.|+ .+ .+.++.+..... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999988632 111111 11 12332 22 344555543211 1112
Q ss_pred HHHHHHHHHHHhcCC--eEEEEEecCCC-CCcCChhhhhhhcCC-CCCCcEEEEEcCchhHHhhccCCceEeC
Q 042509 261 LQSYLLRIYEAIAKK--KFLLVLDDVWN-DDRTKWEPLNHCLMN-GQCGSKILVTTRKETVSRMMESTNVMFI 329 (892)
Q Consensus 261 ~~~~~~~l~~~l~~k--r~LlVlDd~w~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l 329 (892)
-+...-.+...+..+ +-++++|+.-. -+....+.+...+.. ...|..||++|.+.+.... ..+++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 223333455566566 77888898732 122233334444432 1246678888888766543 3344444
No 267
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.038 Score=51.86 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=72.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE---------------------eCCC-----------------
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC---------------------VSDP----------------- 237 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~s~~----------------- 237 (892)
...+.++|..|.|||||.+.+|..++.. ...+|+. |-|+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4689999999999999999999963321 1223331 0000
Q ss_pred ----CCHHHHHHHH---HHhccCC------CCCCCCHHHHHHHHHHHhcCCeEEEEEecCC-CCC-cCChhhhhhhcCCC
Q 042509 238 ----FDEFSVAKSI---IEGLEGE------TSNLGSLQSYLLRIYEAIAKKKFLLVLDDVW-NDD-RTKWEPLNHCLMNG 302 (892)
Q Consensus 238 ----~~~~~~~~~i---~~~l~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w-~~~-~~~~~~l~~~l~~~ 302 (892)
....++-+.. ++..+.. +.+.+--++..-.|.+.+-+++-+++=|.-- +-| ...|+-+.-+-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 1122222222 2222221 1222334555667888888899999988642 112 23454433322235
Q ss_pred CCCcEEEEEcCchhHHhhcc
Q 042509 303 QCGSKILVTTRKETVSRMME 322 (892)
Q Consensus 303 ~~gs~iivTtr~~~v~~~~~ 322 (892)
..|+.||++|.+..+-..+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 67999999999988776653
No 268
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.10 E-value=0.11 Score=54.33 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=38.4
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHH
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 243 (892)
++=..+....+...+... +.|.|.|.+|+||||+|+.+.. +.... .+.|..+...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 444444556676766542 3599999999999999999988 34322 234555554444333
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.09 E-value=0.027 Score=53.60 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=29.7
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD 239 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 239 (892)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999883 333335677887765443
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.02 Score=59.88 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=46.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..+++.|+|+.|+||||++.++......+..-..+..|+.... ....+.+....+.++.+.....+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 4579999999999999999998874222211124555654321 112233333333333322222334444444433 33
Q ss_pred CCeEEEEEecC
Q 042509 274 KKKFLLVLDDV 284 (892)
Q Consensus 274 ~kr~LlVlDd~ 284 (892)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 271
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.08 E-value=0.011 Score=66.47 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=59.6
Q ss_pred ccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 042509 193 QKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 193 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 272 (892)
....+++.++|++|+||||||+-+++.. -| .++=|++|..-+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 3457899999999999999999998842 22 3677888887777777666665554322 12
Q ss_pred --cCCeEEEEEecCCCCCcCChhhhhhhc
Q 042509 273 --AKKKFLLVLDDVWNDDRTKWEPLNHCL 299 (892)
Q Consensus 273 --~~kr~LlVlDd~w~~~~~~~~~l~~~l 299 (892)
.+++..+|+|.++.......+.+.+.+
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 257788999999654433344444443
No 272
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.06 E-value=0.039 Score=52.69 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhh-hcc--cc---eeEEEEeCCCCC--HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDV-RNH--FK---IRMWVCVSDPFD--EFSVAKSIIEGLEGETSNLGSLQSYLLR 267 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 267 (892)
..+++|+|..|.|||||++.+..-... .+. ++ .+.++ .+... ...+...+.-. .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 458999999999999999999884221 111 11 12222 23221 11222222210 11122233344445
Q ss_pred HHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 268 IYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 268 l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
+.+.+..++=++++|+--. -|......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 6666767778889998732 1222333344444332 356888887766543
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.018 Score=60.40 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=55.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 269 (892)
..+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4679999999999999999988773 33344568899887766653 233333221 12334555655555
Q ss_pred HHh-cCCeEEEEEecC
Q 042509 270 EAI-AKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l-~~kr~LlVlDd~ 284 (892)
... ++..-+||+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 544 345679999997
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.03 E-value=0.086 Score=63.43 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=93.0
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
.++.|.+..++.+.+.+.-+-.. +....+-+.++|++|+|||++|+.+++. ....| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 45788888888887766421100 0112345888999999999999999983 33222 22221 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCC------CcCC------hhhhhhhcCC--CCCCcE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWND------DRTK------WEPLNHCLMN--GQCGSK 307 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~------~~~~------~~~l~~~l~~--~~~gs~ 307 (892)
+++.... ......+...+...-+..+.+|++|++..- .... ..++...+.. ...+.-
T Consensus 522 ----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 111112222222233466789999998421 0001 1123333332 223445
Q ss_pred EEEEcCchhHHh-hc---c-CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 308 ILVTTRKETVSR-MM---E-STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 308 iivTtr~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
||.||...+... .+ + -...+.+...+.++..++|+.+.... .....-++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 666775543221 11 1 24578888888998899987654222 11111223 44667777654
No 275
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.02 E-value=0.064 Score=52.74 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=87.7
Q ss_pred CCceecchhhHHH---HHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHH
Q 042509 168 EDRVCGRDDEKNK---LIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 168 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 244 (892)
-+++||.++.+.+ |++.|..+..=+.-..+.|..+|++|.|||.+|+++.+.. +..| +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vka-------t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVKA-------T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEech-------H
Confidence 3568999877654 5666665442233457899999999999999999999953 2222 22211 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCC--------cCChh----hhhhhcCC--CCCCcEEE
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDD--------RTKWE----PLNHCLMN--GQCGSKIL 309 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~--------~~~~~----~l~~~l~~--~~~gs~ii 309 (892)
+-|-+.++ +-...++.+.+.. +--++++.+|.++... ..+.. .+..-+.. .+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111111 1222233333322 4568999999874210 01111 22222221 34566666
Q ss_pred EEcCchhHHhh-ccC--CceEeCCCCCHHHHHHHHHHHhh
Q 042509 310 VTTRKETVSRM-MES--TNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 310 vTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
-+|...+.... +.+ ..-++...-+++|..+++..++.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66665544332 111 33566667788888898888773
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.02 E-value=0.011 Score=58.29 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=58.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH---HHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK---SIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
+++.|+|+.|+||||++..+... ...+....+++- ..+. +.... .+..+-. ...+.......++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPI--EFVHESKRSLINQRE----VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCc--cccccCccceeeecc----cCCCccCHHHHHHHHhc
Confidence 47899999999999999987773 333333344432 2211 11110 1111100 01112234456677776
Q ss_pred CCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 274 KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
..+=.|++|++- +.+.+....... ..|..++.|+....+..
T Consensus 73 ~~pd~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 667799999994 333333333322 23556888877655443
No 277
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.24 Score=51.80 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=89.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCh---h-----hhcccceeEEEEe-CCCCCHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDP---D-----VRNHFKIRMWVCV-SDPFDEFSVAKSIIEGLEGETSNLGSLQSYLL 266 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~---~-----~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 266 (892)
.++..++|..|.||+++|..+.+.- . ...|-+...++.. +.....+++. ++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 5677799999999999998876631 0 0111112223221 1111221211 1222221110
Q ss_pred HHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcC-chhHHh-hccCCceEeCCCCCHHHHHHHHHHH
Q 042509 267 RIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTR-KETVSR-MMESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 267 ~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
.-.+++-++|+|++..........+...+......+.+|++|. ...+.. ..+.+..+++.++++++..+.+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 0015777899999966555567778888888777777776554 344432 3455779999999999998877653
Q ss_pred hhCCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 042509 345 AFFGRSPSECENLEEIGRKIVHKCKGLPLAAKT 377 (892)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 377 (892)
+ . . ++.++.++...+|.--|+..
T Consensus 162 --~-~--~-----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 --N-K--E-----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred --C-C--C-----hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 1 23355566666663345444
No 278
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.016 Score=56.49 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=44.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH--hccCCCCCCCCHHHHHHHHHHHh
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE--GLEGETSNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 272 (892)
++.+|+|.|.+|+||||+|+.++. ..+.+. ++-++....+. ..-.....+ ......+..-+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 468999999999999999999988 444331 22222111111 000011111 11112234456777778888888
Q ss_pred cCCe
Q 042509 273 AKKK 276 (892)
Q Consensus 273 ~~kr 276 (892)
+|++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 279
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.023 Score=55.57 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=50.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCC---CCCCHHHHH-HHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETS---NLGSLQSYL-LRIYE 270 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~ 270 (892)
++|+.++|+.|+||||.+-+++.. .+.+-..+..++... .....+-++..++.++.+.. ...+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 368999999999999999888873 333334566777643 23455667777777764421 122233333 33333
Q ss_pred HhcCCeEEEEEecCC
Q 042509 271 AIAKKKFLLVLDDVW 285 (892)
Q Consensus 271 ~l~~kr~LlVlDd~w 285 (892)
.-..+.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333467777663
No 280
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.97 E-value=0.017 Score=61.75 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+..... ..-...+.|++.... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999998888765432 234688999999999999999976311 111223445555422 2222222221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 250 GLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
.-.+....... .....+ + ....=.++||++..-.......+...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l-~--~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRF-E--RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCch-h--ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11110000000 000111 1 1122247789997655555666666654322 13578887754
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0066 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
--|.|.|++|+||||+++++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45899999999999999999983
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.96 E-value=0.0044 Score=68.80 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=39.7
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+++|.++.+++|++.|......-....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432221123457999999999999999999988
No 283
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.021 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 284
>PRK09354 recA recombinase A; Provisional
Probab=95.94 E-value=0.023 Score=60.15 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=55.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 269 (892)
..+++-|+|++|+||||||.+++.. ....-..++|+.....++.. .+++++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4679999999999999999988773 33344568899888777753 334443221 12234555555555
Q ss_pred HHh-cCCeEEEEEecC
Q 042509 270 EAI-AKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l-~~kr~LlVlDd~ 284 (892)
..+ +++.-+||+|-+
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 554 345679999998
No 285
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.93 E-value=0.066 Score=60.07 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=89.5
Q ss_pred CceecchhhHHHHHHHHhc---CCc-ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLS---ESS-EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVA 244 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~---~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 244 (892)
+++.|.+..++.+.+.... ... -+-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H--
Confidence 3577877666666543211 000 01123467899999999999999999883 33222 112211 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc--C-----Ch-----hhhhhhcCCCCCCcEEEEEc
Q 042509 245 KSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR--T-----KW-----EPLNHCLMNGQCGSKILVTT 312 (892)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~--~-----~~-----~~l~~~l~~~~~gs~iivTt 312 (892)
+..... ..+...+.+.+...-...+.+|++|+++..-. . .+ ..+...+.....+.-||.||
T Consensus 295 --l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 111110 01111222222222235789999999953100 0 01 11222222233344466677
Q ss_pred Cchh-HHhhc----cCCceEeCCCCCHHHHHHHHHHHhhCCCCCC-CCchHHHHHHHHHHhcCCch
Q 042509 313 RKET-VSRMM----ESTNVMFIEELSESECWRLFQQLAFFGRSPS-ECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 313 r~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~G~P 372 (892)
.... +-..+ .-...+.+..-+.++..++|..+........ ...+ ...+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 5443 21111 1245778888889999999987764322111 1122 345666666643
No 286
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.039 Score=65.01 Aligned_cols=122 Identities=15% Similarity=0.174 Sum_probs=75.3
Q ss_pred ceecchhhHHHHHHHHhcCCcccc--cceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQ--KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
.++|-++.+..|.+.+.....+-. .....+.+.|+.|+|||.||+++.. .+-+..+..+-++.|+ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-h
Confidence 467888888888888775542111 2567888999999999999999887 3433334444444443 222 3
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeE-EEEEecCCCCCcCChhhhhhhcCCC
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKF-LLVLDDVWNDDRTKWEPLNHCLMNG 302 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDd~w~~~~~~~~~l~~~l~~~ 302 (892)
.+.++.+. .-. -.+....|.+.++.++| +|.||||...+++....+...+..+
T Consensus 634 skligsp~-gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPP-GYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCc-ccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 33333222 111 11223356777777775 6668999877777666666666544
No 287
>PTZ00301 uridine kinase; Provisional
Probab=95.87 E-value=0.017 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357999999999999999998876
No 288
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.87 E-value=0.02 Score=64.59 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=43.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC 233 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 233 (892)
.+++--.+-++++..||..... +....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 3455666778888888875432 1223579999999999999999999883 2466666764
No 289
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.84 E-value=0.063 Score=62.10 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
....++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+.+... ..-...+.|++....+ ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHHH
Confidence 345799999999999888764432 234578999999999999999987421 1111234455544321 22222
Q ss_pred -HHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 247 -IIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 247 -i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
++..-.+........ .... .-....-.|+||++..-.......+...+..+. ...+||.||..
T Consensus 266 ~lfg~~~~~~~~~~~~--~~g~---~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQ--RKGR---FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HHcCCCCCccCCCCcC--CCCc---ccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 211111000000000 0000 001223458899997655556666766664432 12478887754
No 290
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.84 E-value=0.025 Score=53.83 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=62.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC--CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP--FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..+++|+|..|.|||||.+.++.-. ......+++.-... .+..+..+ +.+..- .+...-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 4589999999999999999998732 22334444422111 11111111 111110 012222334445666677
Q ss_pred CCeEEEEEecCCC-CCcCChhhhhhhcCCC-CCCcEEEEEcCchhH
Q 042509 274 KKKFLLVLDDVWN-DDRTKWEPLNHCLMNG-QCGSKILVTTRKETV 317 (892)
Q Consensus 274 ~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v 317 (892)
.++-++++|+.-. -|......+...+... ..|..||++|.+...
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 7788899999743 2223333444444322 236678888887653
No 291
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.82 E-value=0.037 Score=53.15 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=56.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE------eCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC------VSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIY 269 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 269 (892)
-.+++|+|..|+|||||++.+..-.. .....+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 46899999999999999999987321 122222221 111111 112223334466
Q ss_pred HHhcCCeEEEEEecCCCC-CcCChhhhhhhcCCC-CC-CcEEEEEcCchhHHh
Q 042509 270 EAIAKKKFLLVLDDVWND-DRTKWEPLNHCLMNG-QC-GSKILVTTRKETVSR 319 (892)
Q Consensus 270 ~~l~~kr~LlVlDd~w~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 319 (892)
..+..++-++++|+--.. |......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 667777889999997421 222222333333221 12 255777777655443
No 292
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.79 E-value=0.03 Score=55.05 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=44.3
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhc-ccc---eeEEEEeCCCCCHHHHHHHHHH---hccCCCCCCCCHHHHHHHHHH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRN-HFK---IRMWVCVSDPFDEFSVAKSIIE---GLEGETSNLGSLQSYLLRIYE 270 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~---~~~wv~~s~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~l~~ 270 (892)
||+|.|.+|+||||+|+++.. .... ... ....++.............--. ......+..-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999988 3332 222 1333333322222222221111 111112344667777777777
Q ss_pred HhcCCeEEE
Q 042509 271 AIAKKKFLL 279 (892)
Q Consensus 271 ~l~~kr~Ll 279 (892)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666766444
No 293
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.78 E-value=0.0026 Score=60.71 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=30.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhh-cccceeEEEEeCCCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVR-NHFKIRMWVCVSDPF 238 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~ 238 (892)
..++.++|+.|+|||.||+.+.+ .+. +.....+-+.++...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhccc
Confidence 56899999999999999999988 344 344556666665533
No 294
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.76 E-value=0.0047 Score=60.91 Aligned_cols=81 Identities=25% Similarity=0.289 Sum_probs=39.9
Q ss_pred cCCcceEEcCCCCCCcccccccCCCCCCEEeccCc--CCccccchhhhccccCCeeccccccccccc--ccccCCcCCCc
Q 042509 571 FMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDC--CNLKRLPQEIGKLVNLRYLIYNDSYLHYLP--RGIERLTCLRT 646 (892)
Q Consensus 571 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp--~~i~~L~~L~~ 646 (892)
+..|+.|++.+..++.+ ..+-.|++|++|.++.| .....++.-..++++|++|.++.|++..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444554444432 12235566666666666 333444444455566666655555554321 12334445555
Q ss_pred CCceEe
Q 042509 647 LSEFVV 652 (892)
Q Consensus 647 L~l~~~ 652 (892)
|+++.+
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 555544
No 295
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.73 E-value=0.037 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.9
Q ss_pred cceEEEEEEecCCchHHHHHHHHhC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
....+++|.|..|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.71 E-value=0.039 Score=53.21 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 297
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.042 Score=61.06 Aligned_cols=89 Identities=18% Similarity=0.059 Sum_probs=46.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..++++|+|.+|+||||++.++......+.....+..++... .....+.++...+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999988876311111123455554422 1122233333333333222222333444444433 33
Q ss_pred CCeEEEEEecCC
Q 042509 274 KKKFLLVLDDVW 285 (892)
Q Consensus 274 ~kr~LlVlDd~w 285 (892)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4578888873
No 298
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.033 Score=56.72 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-------------------
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET------------------- 255 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------- 255 (892)
...++.|+|.+|+|||+||.++.... .+ +=..++|++..+ +..++.+.+. +++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~--~~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTEN--TSKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCC--CHHHHHHHHH-HCCCChhHHHhCCCceEEecccccc
Confidence 46799999999999999999986531 22 234688888865 3455555432 222110
Q ss_pred -CCCCCHHHHHHHHHHHhcC-CeEEEEEecCC
Q 042509 256 -SNLGSLQSYLLRIYEAIAK-KKFLLVLDDVW 285 (892)
Q Consensus 256 -~~~~~~~~~~~~l~~~l~~-kr~LlVlDd~w 285 (892)
......+++...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55589999973
No 299
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.69 E-value=0.037 Score=55.41 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=39.8
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcc-c-ceeEEEEeCCCCCHHHHHHHHHHhcc-CCCCCCCCHHHHHHHHHHHhc
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNH-F-KIRMWVCVSDPFDEFSVAKSIIEGLE-GETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 273 (892)
+|+|.|..|+||||+|+.+.. ..... . ..+..++....+.......... .+. ...+...+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999987 33210 1 2344555554433333222221 111 112344556666655555544
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.67 E-value=0.035 Score=53.49 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=59.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC--CCCHHHHHHHHHHhccCCC--CC-------CCCHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD--PFDEFSVAKSIIEGLEGET--SN-------LGSLQSY 264 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~--~~-------~~~~~~~ 264 (892)
..+++|+|..|.|||||.+.+..-. ......+++.-.. ........+.+. .+.... .. ...-+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998731 1222233321110 011111111110 000000 00 1111223
Q ss_pred HHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCC-CCCCcEEEEEcCchhHHh
Q 042509 265 LLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMN-GQCGSKILVTTRKETVSR 319 (892)
Q Consensus 265 ~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 319 (892)
.-.+...+..++-++++|+... -|......+...+.. ...|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3345566666777899999743 122223334444432 123667888888776554
No 301
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.034 Score=53.52 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=60.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC--CC---CC---------CCCH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG--ET---SN---------LGSL 261 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~---~~---------~~~~ 261 (892)
..+++|+|..|.|||||++.++... ......+++.-....... ..+.+.+.. +. .. ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4689999999999999999998842 122333333211000000 011111110 00 00 1111
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCC-CCCcEEEEEcCchhHHh
Q 042509 262 QSYLLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNG-QCGSKILVTTRKETVSR 319 (892)
Q Consensus 262 ~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 319 (892)
+...-.+...+..++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2233346667778888999999743 1222233344444321 23667888888766544
No 302
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.67 E-value=0.033 Score=66.43 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=74.0
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
..++|+...++.+.+.+..-.. ...-|.|+|..|+|||++|+.+.+.... .-...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhc
Confidence 3699999999998877764321 2346899999999999999999874211 11234455554422 122222222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
....+..... .......+ + ....=.++||++..-.......+...+..+. ...+||.||..
T Consensus 449 g~~~~~~~g~--~~~~~g~l-e--~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTGA--SAQRIGRF-E--LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Cccccccccc--ccchhhHH-H--hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 2111110000 00111111 1 1223468999997655555566666664321 34588888864
No 303
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0043 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=9.9
Q ss_pred cceEEcCCCCCCccccccc
Q 042509 574 LRFLKLSKAEIVELPETCC 592 (892)
Q Consensus 574 L~~L~L~~~~i~~lp~~i~ 592 (892)
|++|+|++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.65 E-value=0.04 Score=54.12 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=51.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-h---
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA-I--- 272 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l--- 272 (892)
++..|.|.+|.||||+++.+... +... ...+.+......-... +.+..+... ..+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a---~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIEA---QTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS-E---EEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcch---hhHHHHHhcCCccccccc
Confidence 57889999999999999998773 3332 2333333322222222 222221110 0000000000000 0
Q ss_pred --cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch
Q 042509 273 --AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 273 --~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 315 (892)
..++-+||+|++...+...+..+...... .|+++|+.--..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999965555556666555544 477888776544
No 305
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.048 Score=55.90 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=57.5
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCC-CCCCCCHHH---HHHHHH
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGE-TSNLGSLQS---YLLRIY 269 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~~~~~---~~~~l~ 269 (892)
+..+++=|+|+.|+||||+|.+++-. .+..-..++|++....+++..+.+--...+..- .....+.++ ....+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999888774 444444889999999898887654333312111 112233333 333333
Q ss_pred HHhcCCeEEEEEecC
Q 042509 270 EAIAKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l~~kr~LlVlDd~ 284 (892)
+....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333344679999988
No 306
>PTZ00494 tuzin-like protein; Provisional
Probab=95.62 E-value=0.14 Score=54.77 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=103.0
Q ss_pred cCCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 166 IDEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..+..+|.|+.+-..+.+.|...+. .+++++.+.|.-|.||++|.+.....+.+ ..++|.+.. .++.++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg---~EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGG---TEDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecC---CcchHH
Confidence 4456789999988888888776543 57899999999999999999998774332 467788764 456688
Q ss_pred HHHHhccCCCCCC-CC-HHHHHHH---HHHHhcCCeEEEEEecCCCCCcCChhhhh---hhcCCCCCCcEEEEEcCchhH
Q 042509 246 SIIEGLEGETSNL-GS-LQSYLLR---IYEAIAKKKFLLVLDDVWNDDRTKWEPLN---HCLMNGQCGSKILVTTRKETV 317 (892)
Q Consensus 246 ~i~~~l~~~~~~~-~~-~~~~~~~---l~~~l~~kr~LlVlDd~w~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~~v 317 (892)
.|++.++.+..+. .| ++-..+. -.....++.-+||+-=-.- ..+..+. ..|.....-+.|++---.+.+
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechHhhh
Confidence 8888887765332 11 2222222 2223456666777643211 1121111 123334445667765544433
Q ss_pred Hhh---ccCCceEeCCCCCHHHHHHHHHHH
Q 042509 318 SRM---MESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 318 ~~~---~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
... +..-..|.+.+++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 222 122457889999999999988764
No 307
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.62 E-value=0.043 Score=57.96 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=55.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhh----cccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---------CCCCH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVR----NHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---------NLGSL 261 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 261 (892)
..+++-|+|.+|+|||+|+.+++-..... ..=..++|++....|+++++.+ +++.++.... ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 46799999999999999998876422221 1124689999998888888754 4555543221 11223
Q ss_pred HHHH---HHHHHHh-cCCeEEEEEecC
Q 042509 262 QSYL---LRIYEAI-AKKKFLLVLDDV 284 (892)
Q Consensus 262 ~~~~---~~l~~~l-~~kr~LlVlDd~ 284 (892)
++.. ..+...+ +++--|||+|.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 3333 3333333 334557888887
No 308
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.56 E-value=0.036 Score=56.87 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=54.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhccCCC---------CCCCCH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGLEGET---------SNLGSL 261 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 261 (892)
...+.=|+|.+|+|||.|+.+++-...+.. .=..++|++-...|..+++. +|++...... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346899999999999999987765322221 22469999998889887775 4666543221 011233
Q ss_pred HHHHHH---HHHHh-cCCeEEEEEecC
Q 042509 262 QSYLLR---IYEAI-AKKKFLLVLDDV 284 (892)
Q Consensus 262 ~~~~~~---l~~~l-~~kr~LlVlDd~ 284 (892)
+++... +...+ +++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333333 33333 345568999988
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.56 E-value=0.039 Score=54.58 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=39.1
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhcccceeE-------EEEeCCCCCHHHH--HHHHHHhccCCC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRM-------WVCVSDPFDEFSV--AKSIIEGLEGET 255 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-------wv~~s~~~~~~~~--~~~i~~~l~~~~ 255 (892)
.+..+|.++||+|+||||+.|+++.+...+..-..++ =|....+.|+++. +++..++-...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4567899999999999999999988533322211222 2223445566654 566777665544
No 310
>PRK03839 putative kinase; Provisional
Probab=95.54 E-value=0.02 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999883
No 311
>PRK07667 uridine kinase; Provisional
Probab=95.52 E-value=0.024 Score=55.63 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+.|.+.+.... ....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665544 2458999999999999999999988
No 312
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.52 E-value=0.033 Score=59.57 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
++|....++++.+.+..-.. ...-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46888788887777764432 2345899999999999999999763
No 313
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.00059 Score=64.22 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=41.7
Q ss_pred CCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCC-CcCCCCCcceE-EEEcCCCC
Q 042509 821 AFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSL-PNQLLQRTKLN-LNISLCPT 890 (892)
Q Consensus 821 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~l~~l~~L~-L~i~~c~~ 890 (892)
.+++++.|.+.+|.++.+|. ....-+..|+|+.|+|++||.+++- -.++..+++|+ |.|.+.|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~------L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWC------LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHH------HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 45667777777777777776 2222235678888888888777743 23555677777 77777664
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.068 Score=59.13 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=47.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
.+++.++|++|+||||++.++.........-..+..|+..... ...+-++...+.++.+.....+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4699999999999999998877632201222356666653311 11122333333333322222334444444443 33
Q ss_pred CeEEEEEecCC
Q 042509 275 KKFLLVLDDVW 285 (892)
Q Consensus 275 kr~LlVlDd~w 285 (892)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34578889763
No 315
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.21 Score=51.67 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-----------h-cccceeEEEE-eCCCCCHHHH
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-----------R-NHFKIRMWVC-VSDPFDEFSV 243 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-----------~-~~f~~~~wv~-~s~~~~~~~~ 243 (892)
.-+++...+.... -.+...++|+.|+||+++|..+...--- . .|-| ..|+. ...
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~------- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGK------- 71 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCC-------
Confidence 3455666665443 2567889999999999999777662100 0 0111 11111 000
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-hhH
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-ETV 317 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 317 (892)
.....+++.. .+.+.+ .+++-++|+|++.....+.+..+...+.....++.+|++|.+ ..+
T Consensus 72 ------------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 72 ------------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRL 138 (290)
T ss_pred ------------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhC
Confidence 0011233322 222222 366678999999877778888999988887777776666555 444
Q ss_pred H-hhccCCceEeCCCC
Q 042509 318 S-RMMESTNVMFIEEL 332 (892)
Q Consensus 318 ~-~~~~~~~~~~l~~L 332 (892)
. +..+.+..+.+.++
T Consensus 139 l~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 139 PPTIRSRSLSIHIPME 154 (290)
T ss_pred cHHHHhcceEEEccch
Confidence 3 33344566777654
No 316
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0063 Score=60.04 Aligned_cols=83 Identities=22% Similarity=0.179 Sum_probs=43.4
Q ss_pred CcCCcceEEcCCC--CCC-cccccccCCCCCCEEeccCcCCccccchh---hhccccCCeecccccccccccc----ccc
Q 042509 570 NFMYLRFLKLSKA--EIV-ELPETCCELFNLQTLEMEDCCNLKRLPQE---IGKLVNLRYLIYNDSYLHYLPR----GIE 639 (892)
Q Consensus 570 ~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~---i~~l~~L~~L~~~~~~l~~lp~----~i~ 639 (892)
.|++|++|.++.| .+. .++-...++++|++|++++|+ +.. ++. +.++.+|..|++.++....+-. .+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4556666677666 333 444444455677777777666 322 222 3445555555444443332211 144
Q ss_pred CCcCCCcCCceEecc
Q 042509 640 RLTCLRTLSEFVVSR 654 (892)
Q Consensus 640 ~L~~L~~L~l~~~~~ 654 (892)
-+++|+.|+......
T Consensus 141 ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDG 155 (260)
T ss_pred HhhhhccccccccCC
Confidence 567777777665543
No 317
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.48 E-value=0.029 Score=55.39 Aligned_cols=121 Identities=13% Similarity=0.164 Sum_probs=62.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCC---CCHHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNL---GSLQSYLLRIYEAI 272 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l 272 (892)
.+++.|.|+.|.||||+.+.+....-. .+ ...+|.+.. ..-.++..|...+....... .....-..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 478999999999999999888753211 11 112222211 11123333333333321111 11111111222222
Q ss_pred --cCCeEEEEEecCCCC-CcCCh----hhhhhhcCCCCCCcEEEEEcCchhHHhhccC
Q 042509 273 --AKKKFLLVLDDVWND-DRTKW----EPLNHCLMNGQCGSKILVTTRKETVSRMMES 323 (892)
Q Consensus 273 --~~kr~LlVlDd~w~~-~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 323 (892)
..++-|+++|..... ++.+. ..+...+.. .|+.+|+||...+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 356789999998432 11111 122233332 37789999999888876543
No 318
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.48 E-value=0.02 Score=57.13 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHHH-
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---NLGSLQSYLLRIYEA- 271 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~- 271 (892)
.+++.|+|..|.|||||.+.+...... .+-...+| ... .. ...+.++...+..... .......-.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 378999999999999999998742111 11111111 111 00 0112222222222111 111222222333332
Q ss_pred -hcCCeEEEEEecCCCCC-cCChhh----hhhhcCCC-CCCcEEEEEcCchhHHhhc
Q 042509 272 -IAKKKFLLVLDDVWNDD-RTKWEP----LNHCLMNG-QCGSKILVTTRKETVSRMM 321 (892)
Q Consensus 272 -l~~kr~LlVlDd~w~~~-~~~~~~----l~~~l~~~-~~gs~iivTtr~~~v~~~~ 321 (892)
+..++.|+++|...... +.+... +...+... ..+..+|+||...+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 24678999999985421 111111 22233222 2345799999988877654
No 319
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.46 E-value=0.067 Score=55.53 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=43.6
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA 271 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 271 (892)
....+|+|.|..|+||||+|+.+.. ...... ..+..++..............-..-....+..-+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 3568999999999999999987755 222111 124455544433333333221100011123445666666666666
Q ss_pred hcCC
Q 042509 272 IAKK 275 (892)
Q Consensus 272 l~~k 275 (892)
..|+
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 320
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.045 Score=58.78 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=49.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc--ceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF--KIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 272 (892)
.+++.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.+.....+..++...+. .+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-EL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hh
Confidence 468999999999999999999883 22222 3455555332 223445555555555543322223333333333 34
Q ss_pred cCCeEEEEEecCC
Q 042509 273 AKKKFLLVLDDVW 285 (892)
Q Consensus 273 ~~kr~LlVlDd~w 285 (892)
.++. +|++|..-
T Consensus 214 ~~~D-lVLIDTaG 225 (374)
T PRK14722 214 RNKH-MVLIDTIG 225 (374)
T ss_pred cCCC-EEEEcCCC
Confidence 4554 56689884
No 321
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.43 E-value=0.043 Score=58.63 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcc----cceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNH----FKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
...++-|+|.+|+|||+++.+++........ =..++|++....+++.++.+. ++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 4679999999999999999888764222111 147999999888888776543 3443
No 322
>PRK05439 pantothenate kinase; Provisional
Probab=95.43 E-value=0.072 Score=55.75 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=45.9
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhcc--cceeEEEEeCCCCCHHHHHHHHHHhcc--CCCCCCCCHHHHHHHHH
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH--FKIRMWVCVSDPFDEFSVAKSIIEGLE--GETSNLGSLQSYLLRIY 269 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~ 269 (892)
....+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+.. ..+. ...++.-+.+.+...|.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHH
Confidence 4578999999999999999998876 33322 123444555444333333221 1111 11234456666766666
Q ss_pred HHhcCCe
Q 042509 270 EAIAKKK 276 (892)
Q Consensus 270 ~~l~~kr 276 (892)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666664
No 323
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.41 E-value=0.013 Score=60.72 Aligned_cols=97 Identities=25% Similarity=0.349 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSN 257 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 257 (892)
...+++.+.... +-+.++|+.|+|||++++...+.-. ...| ...-++.+..-+...+ +.+++.-......
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCC
Confidence 345666665532 4679999999999999999886311 1111 2334555554333333 3333221110000
Q ss_pred CCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChh
Q 042509 258 LGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWE 293 (892)
Q Consensus 258 ~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~ 293 (892)
. ...--.+|+.++++||+--...+.|.
T Consensus 92 -~--------~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 92 -R--------VYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp -E--------EEEEESSSEEEEEEETTT-S---TTS
T ss_pred -C--------CCCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 00001478999999999554444443
No 324
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.41 E-value=0.071 Score=56.89 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=41.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhh----cccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVR----NHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
...++-|+|.+|+|||+|+..++-..... +.-..++|++....|.++++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 46789999999999999998877532221 111368999999988887764 45565543
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.37 E-value=0.066 Score=54.10 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=32.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
..++.|.|.+|.||||||.+++.. -.+.. ..++|++.. .+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 469999999999999998666553 12222 346676633 3556666665
No 326
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.064 Score=53.80 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=66.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChh-hhc----------cc---ceeEEEEeCCCC------CH---------------
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPD-VRN----------HF---KIRMWVCVSDPF------DE--------------- 240 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~----------~f---~~~~wv~~s~~~------~~--------------- 240 (892)
..+++|+|+.|.|||||.+.+.--.. .++ .+ ..+.||.-...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36999999999999999999988211 000 01 235555421111 11
Q ss_pred -------HHHHHHHHHhccCCC-----CCCCCH-HHHHHHHHHHhcCCeEEEEEecCCC-CCcC---ChhhhhhhcCCCC
Q 042509 241 -------FSVAKSIIEGLEGET-----SNLGSL-QSYLLRIYEAIAKKKFLLVLDDVWN-DDRT---KWEPLNHCLMNGQ 303 (892)
Q Consensus 241 -------~~~~~~i~~~l~~~~-----~~~~~~-~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~---~~~~l~~~l~~~~ 303 (892)
.+...+.++.++... -..-+- +.....|.+.|..++=|++||.-.. -|.. ..-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 133344444443321 111222 3333456788889999999998532 1222 222233333333
Q ss_pred CCcEEEEEcCchhH
Q 042509 304 CGSKILVTTRKETV 317 (892)
Q Consensus 304 ~gs~iivTtr~~~v 317 (892)
|..||++|.+-..
T Consensus 189 -g~tIl~vtHDL~~ 201 (254)
T COG1121 189 -GKTVLMVTHDLGL 201 (254)
T ss_pred -CCEEEEEeCCcHH
Confidence 8889999987543
No 327
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0016 Score=64.18 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=15.0
Q ss_pred CcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcC
Q 042509 570 NFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 570 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 606 (892)
+++.|++|.||-|+|+.+ +.+..+++|+.|+|+.|.
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC 74 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc
Confidence 344444444444444433 223344444444444443
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.35 E-value=0.094 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...++.++|.+|+||||.|.+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999887776
No 329
>PHA02244 ATPase-like protein
Probab=95.35 E-value=0.052 Score=57.54 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
-|.|+|.+|+|||+||++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999988
No 330
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.29 E-value=0.042 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999883
No 331
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.28 E-value=0.079 Score=56.16 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=39.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhcc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGLE 252 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 252 (892)
...++.|+|.+|+|||||+..++....... .-..++|++....+...++ .++++.+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 468999999999999999998875322211 1235799998887777764 44455443
No 332
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.27 E-value=0.066 Score=61.34 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+.+... ..-...+.|++....+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999999888875432 345789999999999999999988421 1112345566655332 2122222
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
+-...+....... .....+ +. .+ .=-|+||++..-.......+...+..+. ...+||.||..
T Consensus 259 fG~~~g~~~ga~~--~~~g~~-~~-a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKF-EL-AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCCCcc--cCCcch-hh-cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 2111111000000 000001 11 12 2236899997655555666766665432 24588888864
No 333
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0023 Score=63.05 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=67.9
Q ss_pred CcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccc--cccCCcCCCcC
Q 042509 570 NFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPR--GIERLTCLRTL 647 (892)
Q Consensus 570 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L 647 (892)
.+.+.+.|+..||.+..+. .+.+++.|++|.|+-|. ++.+ ..+..|++|++|.+..|.|..+.. .+.++++|++|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3567788999999998762 34678999999999998 7777 448899999999888888877643 36889999999
Q ss_pred CceEeccCC
Q 042509 648 SEFVVSRSG 656 (892)
Q Consensus 648 ~l~~~~~~~ 656 (892)
.+-.|....
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 998886544
No 334
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.25 E-value=0.04 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998883
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.24 E-value=0.12 Score=52.71 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=35.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
...++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 46899999999999999998876531 2 2345688888765 555555544
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.093 Score=55.84 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=54.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI- 272 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 272 (892)
+.+++.++|+.|+||||++.++... ....-..+.+++.... ....+-++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4689999999999999999998863 3222234666665432 22344556666655543322345555555554432
Q ss_pred cCCeEEEEEecCC
Q 042509 273 AKKKFLLVLDDVW 285 (892)
Q Consensus 273 ~~kr~LlVlDd~w 285 (892)
.+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 1344578888874
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.043 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...++.++|++|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 338
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.21 E-value=0.099 Score=53.38 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=71.2
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhc------cc---c-eeEEEEeCCCC-CHHHHHHHHHHhccCCCC---------C
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRN------HF---K-IRMWVCVSDPF-DEFSVAKSIIEGLEGETS---------N 257 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f---~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---------~ 257 (892)
+..|+|++|+|||+||..++-...... .. . .+++++..... ...+-+..+...+..... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 568999999999999988875311110 01 1 35555544432 233444445443321100 0
Q ss_pred -------C---CCHHHHHHHHHHHh-cCCeEEEEEecCCC------CCcCChhhhhhhcCC--CCCCcEEEEEcCchhHH
Q 042509 258 -------L---GSLQSYLLRIYEAI-AKKKFLLVLDDVWN------DDRTKWEPLNHCLMN--GQCGSKILVTTRKETVS 318 (892)
Q Consensus 258 -------~---~~~~~~~~~l~~~l-~~kr~LlVlDd~w~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 318 (892)
. .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01122333344433 34567999996521 122333334443332 23467788877654221
Q ss_pred h--------h------cc-CCceEeCCCCCHHHHHH
Q 042509 319 R--------M------ME-STNVMFIEELSESECWR 339 (892)
Q Consensus 319 ~--------~------~~-~~~~~~l~~L~~~~~~~ 339 (892)
. . .+ ....+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 11 12367777888888766
No 339
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.20 E-value=0.073 Score=54.79 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=65.8
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE---eCCCCCHHHHHHHHHHhccC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC---VSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~~ 253 (892)
..+.++..+.... ....++|+|..|.|||||.+.+... +. .....+++. +.......++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~~-----~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRNN-----RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhCC-----CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 3445555555332 3578999999999999999999984 22 222233332 11111122222211 11110
Q ss_pred CC----CCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 254 ET----SNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 254 ~~----~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
.. .+..+-......+...+ ...+-++++|.+- ....+..+...+. .|..||+||....+..
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 00101011122233333 2567799999983 3344555544442 4778999998766543
No 340
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.20 E-value=0.084 Score=56.23 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=42.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhh----cccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVR----NHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
..++.-|+|.+|+|||+|+.+++-..... +.-..++|++....|.++++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 46789999999999999998886432221 1124689999999899888755 4555543
No 341
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.049 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.12 Score=50.20 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCeEEEEEecCCCC-CcCChhhhhhhcCC-CCCCcEEEEEcCchhHHhhccCCceEe
Q 042509 265 LLRIYEAIAKKKFLLVLDDVWND-DRTKWEPLNHCLMN-GQCGSKILVTTRKETVSRMMESTNVMF 328 (892)
Q Consensus 265 ~~~l~~~l~~kr~LlVlDd~w~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~ 328 (892)
...+.+.+-=++-+.|||..++- |.+....+...+.. ..+|+.+++.|..+.++....+..+|-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34455555557779999998541 22333333332221 234677888888899988876655443
No 343
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.045 Score=55.60 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=48.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCh--hhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDP--DVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
-++|.++|++|.|||+|.++.++.- |..+.|....-+.++. ..++..-..+ ...-+..+.+++++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 4899999999999999999999963 3345555444444432 2223222221 12334556667777776
Q ss_pred CCe--EEEEEecC
Q 042509 274 KKK--FLLVLDDV 284 (892)
Q Consensus 274 ~kr--~LlVlDd~ 284 (892)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 34457887
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=95.17 E-value=0.1 Score=55.48 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=47.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcc-cceeEEEEeCCCC--CHHHHHHHHHHhccCCCC---CCCCHHH-HHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-FKIRMWVCVSDPF--DEFSVAKSIIEGLEGETS---NLGSLQS-YLLR 267 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~ 267 (892)
+..++.++|++|+||||++.+++.. ...+ + .++.+.. ..+ ...+-++...+.++.+.. ...+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4689999999999999988888763 3322 3 3444432 222 223344555555543321 1122222 2233
Q ss_pred HHHHh-cCCeEEEEEecCCC
Q 042509 268 IYEAI-AKKKFLLVLDDVWN 286 (892)
Q Consensus 268 l~~~l-~~kr~LlVlDd~w~ 286 (892)
+.... .+.. +|++|-.-.
T Consensus 215 i~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCC-EEEEECCCc
Confidence 33322 2333 888998843
No 345
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.36 Score=55.94 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=98.8
Q ss_pred CceecchhhHHH---HHHHHhcCCcc---cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNK---LIRKLLSESSE---EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~---l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.++.|-++.+++ +++.|..+..- +..-++=+.++|++|.|||-||++++-... +=|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 357888765555 55555544311 123356789999999999999999999533 234455431
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCc---------------CChhhhhhhcCCCCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDR---------------TKWEPLNHCLMNGQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~---------------~~~~~l~~~l~~~~~gs 306 (892)
+.++.+.+.. ......+... -...+.+|.+|++..... ..+.++..-+.....++
T Consensus 379 ---EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222221111 1111222222 235678888898843110 11223333333222222
Q ss_pred --EEEEEcCchhHHhh----ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 307 --KILVTTRKETVSRM----MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 307 --~iivTtr~~~v~~~----~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
-++-+|+..++... .+. .+.+.+..-+.....++|.-++-..... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 23334544443221 122 5678888888888899998887433322 34456666 888888887543
No 346
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.16 E-value=0.037 Score=58.17 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.5
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.....++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999993
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.11 Score=56.30 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhh--cccceeEEEEeCCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVR--NHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEA 271 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 271 (892)
..++|.++|..|+||||.+.++....... .+-..+..+++... ....+-++...+.++.+-....+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999998888632211 11224555555431 1222335555555554333334445555544443
Q ss_pred hcCCeEEEEEecCCC
Q 042509 272 IAKKKFLLVLDDVWN 286 (892)
Q Consensus 272 l~~kr~LlVlDd~w~ 286 (892)
.+.-+|++|.+-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998853
No 348
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.11 E-value=0.068 Score=52.86 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCh--h-hhcc--cc--------------e-eEEEEeCCCCC--HHHHHHHHHHhccC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDP--D-VRNH--FK--------------I-RMWVCVSDPFD--EFSVAKSIIEGLEG 253 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~~--f~--------------~-~~wv~~s~~~~--~~~~~~~i~~~l~~ 253 (892)
..+++|+|..|.|||||.+.+.... . ..+. |+ . +.|+ .+.+. ......++++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~~- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYVN- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhcc-
Confidence 4699999999999999999988851 0 1110 00 0 1222 11111 0011111111110
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCC-CCCcEEEEEcCchhHHh
Q 042509 254 ETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNG-QCGSKILVTTRKETVSR 319 (892)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 319 (892)
.....-+...-.+...+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 103 --~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 --EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1112223333446666777778999999742 2222333444444322 23567888887766554
No 349
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.11 E-value=0.071 Score=56.89 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=40.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
...++-|+|.+|+||||++.+++....... .=..++||+....++.+++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 467999999999999999988876432210 112799999988888876544 44443
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.08 E-value=0.18 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999998875
No 351
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.08 E-value=0.14 Score=53.60 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=37.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
..++.|.|.+|+||||++.++.... ...+=..++|++... ...++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 4688999999999999999887742 122234688887765 4556666665543
No 352
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.46 Score=49.29 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHh-hccCCceEeCCCCCHHHHHHHHHH
Q 042509 273 AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSR-MMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 273 ~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
.+++-++|+||+.......+..+...+.....++.+|++|.+. .+.. ..+....+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4667799999998877788888999898877777777766543 3433 334466788866 66666666653
No 353
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.07 E-value=0.096 Score=57.80 Aligned_cols=57 Identities=25% Similarity=0.165 Sum_probs=34.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEG 253 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 253 (892)
...+|.++|.+|+||||+|.+++.. ....-..++.|++... ....+.++.+.++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999873 3322223444443221 1223445555555543
No 354
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.07 E-value=0.12 Score=48.89 Aligned_cols=118 Identities=19% Similarity=0.032 Sum_probs=63.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeE---EEEeCCCCCHHHHHHHHHHhc---cCCC----CCCC-C---H
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRM---WVCVSDPFDEFSVAKSIIEGL---EGET----SNLG-S---L 261 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l---~~~~----~~~~-~---~ 261 (892)
...|-|++..|.||||.|-...- +...+=-.+. |+--.........+....-.+ +... .+.. + .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999976666 2222222232 333222234444544430000 1100 0000 1 1
Q ss_pred HHHHHHHHHHhcC-CeEEEEEecCCC---CCcCChhhhhhhcCCCCCCcEEEEEcCch
Q 042509 262 QSYLLRIYEAIAK-KKFLLVLDDVWN---DDRTKWEPLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 262 ~~~~~~l~~~l~~-kr~LlVlDd~w~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 315 (892)
.+.....++.+.. +-=|+|||.+-. ...-..+.+...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1233334444544 445999999821 12234456777777777778999999975
No 355
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.05 E-value=0.05 Score=58.57 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=49.9
Q ss_pred CceecchhhHHHHHHHHhcC-------Cc-ccccceEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCC-
Q 042509 169 DRVCGRDDEKNKLIRKLLSE-------SS-EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSD- 236 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~- 236 (892)
..++|.++.++.+.-.+... .. ...-..+.|.++|++|+|||++|+.+.. .....| +..-|+..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 46899999988887666532 00 0011246789999999999999999988 344333 2222222222
Q ss_pred CCCHHHHHHHHHHhc
Q 042509 237 PFDEFSVAKSIIEGL 251 (892)
Q Consensus 237 ~~~~~~~~~~i~~~l 251 (892)
..+.+.+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 356
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.041 Score=50.16 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=32.4
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGE 254 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 254 (892)
+|.|-|.+|+||||+|+.+.++ ..-.| | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----e------eccHHHHHHHHHcCCC
Confidence 6899999999999999999884 22111 2 2346888888877653
No 357
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.038 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 358
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.04 E-value=0.015 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.01 E-value=0.014 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|.|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 360
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.00 E-value=0.072 Score=53.05 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=36.9
Q ss_pred HHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCC-CCCCcEEEEEcCchhHHhhccCCceEeCCCC
Q 042509 267 RIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMN-GQCGSKILVTTRKETVSRMMESTNVMFIEEL 332 (892)
Q Consensus 267 ~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L 332 (892)
.+...+..++-++++|+--. -|......+...+.. ...|..||++|.+...... ..++.++..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 34555666778999998742 122333444444442 2236678888887654442 556666553
No 361
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.099 Score=57.32 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=48.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCC------CCCCCCHH-----HH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGE------TSNLGSLQ-----SY 264 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~ 264 (892)
...++|+|..|+|||||++.+..... ....+++..-....++.+.....+...... ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46799999999999999998887321 222344443323344444444333322111 11111111 12
Q ss_pred HHHHHHHh--cCCeEEEEEecC
Q 042509 265 LLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 265 ~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.-.+.+++ +++..|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22345555 589999999998
No 362
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.94 E-value=0.2 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.056 Score=51.08 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=62.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC--CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF--DEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..+++|+|..|.|||||++.+.... ......+++.-.... ...+. ...+.... +...-+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHh
Confidence 3689999999999999999998842 223444544322111 11111 11111100 01222333344566666
Q ss_pred CCeEEEEEecCCCC-CcCChhhhhhhcCCC-CCCcEEEEEcCchhHHhh
Q 042509 274 KKKFLLVLDDVWND-DRTKWEPLNHCLMNG-QCGSKILVTTRKETVSRM 320 (892)
Q Consensus 274 ~kr~LlVlDd~w~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 320 (892)
..+-++++|+.-.. |......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67789999998431 222233343333321 124568888877665543
No 364
>PTZ00035 Rad51 protein; Provisional
Probab=94.93 E-value=0.17 Score=54.13 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhh----cccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---------CCCCH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVR----NHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---------NLGSL 261 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 261 (892)
...++.|+|.+|+|||||+.+++-..... ..=..++|++....++.+++ .++++.++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 46899999999999999998887532211 11235779988877777764 444554433210 11223
Q ss_pred HHHHHHH---HHHh-cCCeEEEEEecC
Q 042509 262 QSYLLRI---YEAI-AKKKFLLVLDDV 284 (892)
Q Consensus 262 ~~~~~~l---~~~l-~~kr~LlVlDd~ 284 (892)
+++...+ .+.+ .++--|||+|-+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 3333333 2223 344568888887
No 365
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.92 E-value=0.021 Score=56.85 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 366
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.91 E-value=0.02 Score=53.16 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 367
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.35 Score=52.11 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=65.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEE-EEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMW-VCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
+--.++|++|.|||+++.++++. .+.-++ ...+...+..+ ++.++.. ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHh----------------------CCC
Confidence 44678999999999999999993 222222 22222222222 2222222 234
Q ss_pred eEEEEEecCCCC--------C----------cCChhhhhhhcC--CCCCC-cE-EEEEcCchhHHhh--c--cC-CceEe
Q 042509 276 KFLLVLDDVWND--------D----------RTKWEPLNHCLM--NGQCG-SK-ILVTTRKETVSRM--M--ES-TNVMF 328 (892)
Q Consensus 276 r~LlVlDd~w~~--------~----------~~~~~~l~~~l~--~~~~g-s~-iivTtr~~~v~~~--~--~~-~~~~~ 328 (892)
+-+||+.|++.. . ...+..|+.++. +..+| -| ||.||...+-... + |. ...+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 667788887421 0 012223444433 22232 24 5567765432211 1 22 33677
Q ss_pred CCCCCHHHHHHHHHHHhhC
Q 042509 329 IEELSESECWRLFQQLAFF 347 (892)
Q Consensus 329 l~~L~~~~~~~lf~~~~~~ 347 (892)
+.-=+.+....|+.++...
T Consensus 367 mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred cCCCCHHHHHHHHHHhcCC
Confidence 8888889999999987643
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=94.86 E-value=0.081 Score=58.23 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.++|.+|+||||.+.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998877765
No 369
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.84 E-value=0.019 Score=57.26 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 370
>PRK06217 hypothetical protein; Validated
Probab=94.82 E-value=0.064 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 371
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.80 E-value=0.029 Score=54.67 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHHHhcC
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---NLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~ 274 (892)
++.|+|..|.||||+.+.+.-... -.+-.+.+|..-.. -..+..++..+..... .......-..++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 478999999999999999984321 11111111111000 0001111111211110 112222333345555544
Q ss_pred --CeEEEEEecCCCC-CcCChhh----hhhhcCCCCCCcEEEEEcCchhHHhhcc
Q 042509 275 --KKFLLVLDDVWND-DRTKWEP----LNHCLMNGQCGSKILVTTRKETVSRMME 322 (892)
Q Consensus 275 --kr~LlVlDd~w~~-~~~~~~~----l~~~l~~~~~gs~iivTtr~~~v~~~~~ 322 (892)
++-++++|..-.. ++..-.. +...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 7889999998532 1111111 2222222 23677999999887776543
No 372
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.95 Score=44.36 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=90.3
Q ss_pred eec-chhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 171 VCG-RDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 171 ~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
+|| -+..+++|.+.+.-+.. -+-.+.+-+.++|++|.|||-||++|+++ ...-|+-||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 455 47778888776653321 01235677899999999999999999984 23445666642 2
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC-----------cCChhh---hhhhcCC--CCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD-----------RTKWEP---LNHCLMN--GQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~-----------~~~~~~---l~~~l~~--~~~gs 306 (892)
+.+..+ +.. ..-..++.-.-+ ..-+.+|+.|.+++.. .+.-.. +...+.. ....-
T Consensus 217 lvqk~i----geg--srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYI----GEG--SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHh----hhh--HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 222211 100 000111111111 3457788888885311 111111 2222221 23456
Q ss_pred EEEEEcCchhHHhh-----ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 042509 307 KILVTTRKETVSRM-----MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVH 366 (892)
Q Consensus 307 ~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 366 (892)
+||.+|..-++... -...+.++..+-+++...++++-+.-. .+...--++..+|+++..
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPG 351 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCC
Confidence 78887765443321 122557778887777777777654311 111111345665555543
No 373
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.25 Score=56.63 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=85.0
Q ss_pred CceecchhhHHHHHHHHh---cCCcc----cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLL---SESSE----EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~---~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
.++.|.+...+.+.+.+. ..... .....+.+.++|++|.|||.||+++++ ....+|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence 346666666555554443 22110 123456899999999999999999999 344444222110
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCC-----CCc------CChhhhhhhcCCC--CCCcEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWN-----DDR------TKWEPLNHCLMNG--QCGSKI 308 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~-----~~~------~~~~~l~~~l~~~--~~gs~i 308 (892)
+++...- ...............+..+..|++|.+.. ... ....++...+... ..+..|
T Consensus 311 ----~l~sk~v-----Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKWV-----GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhcccc-----chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 1111110 11122223333344467889999999842 110 1222333333322 233334
Q ss_pred EEEcCchhHHh-hc---cC-CceEeCCCCCHHHHHHHHHHHhh
Q 042509 309 LVTTRKETVSR-MM---ES-TNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 309 ivTtr~~~v~~-~~---~~-~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
|-||....... .+ +. ...+.+.+-+.++..+.|+.+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 55554433222 11 12 45788888999999999998774
No 374
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.74 E-value=0.083 Score=52.27 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccC-------CCCCCCCHHH-----
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEG-------ETSNLGSLQS----- 263 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 263 (892)
.-++|.|.+|+|||+|++.+.+.. .-+.++++.+++. ....++.+++...-.. ...+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468999999999999999998843 2344588888764 3445555555432100 0111111111
Q ss_pred HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 ~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ ++++.|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111233443 699999999998
No 375
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.73 E-value=0.17 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 376
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.037 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999884
No 377
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.72 E-value=0.29 Score=57.59 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=80.3
Q ss_pred ceecchhhHHHHHHHHhcCCcc------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSE------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 243 (892)
++.|.+...+++.+.+...... ...-.+-|.++|++|.|||++|+.+... ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 4677777666665544321100 0011234899999999999999999873 33232 2222221 1
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC----------cCChhhhhh----hcCC--CCCCcE
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD----------RTKWEPLNH----CLMN--GQCGSK 307 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~----------~~~~~~l~~----~l~~--~~~gs~ 307 (892)
. .+ ..+ .........+.......+.+|++|+++.-. ...+..... .+.. ...+.-
T Consensus 222 ~-~~---~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V-EM---FVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H-Hh---hhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 11 100 111222223333334567899999985410 011222211 1221 123445
Q ss_pred EEEEcCchhHHh-hc---c-CCceEeCCCCCHHHHHHHHHHHhh
Q 042509 308 ILVTTRKETVSR-MM---E-STNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 308 iivTtr~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
||.||...+... .+ + -.+.+.+..-+.++..+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 566776654322 11 1 145777888888888888887653
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.71 E-value=0.11 Score=53.88 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=47.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH--HHHHHHHHHhccCCC---CCCCCHHH-HHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE--FSVAKSIIEGLEGET---SNLGSLQS-YLLRI 268 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 268 (892)
+.+++.++|.+|+||||++.+++.. ....-..++++.... +.. .+-++...+..+... ....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888863 333323455665432 222 233333344433211 11122222 22334
Q ss_pred HHHhcCCeEEEEEecCC
Q 042509 269 YEAIAKKKFLLVLDDVW 285 (892)
Q Consensus 269 ~~~l~~kr~LlVlDd~w 285 (892)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44343444578888773
No 379
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.69 E-value=0.039 Score=51.21 Aligned_cols=36 Identities=25% Similarity=0.136 Sum_probs=27.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC 233 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 233 (892)
..||-|+|.+|+||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 5555444555554
No 380
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.66 E-value=0.045 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=18.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999883
No 381
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.65 E-value=0.0037 Score=71.78 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=22.6
Q ss_pred CcCCcceEEcCCCC-CCc--ccccccCCCCCCEEeccCc
Q 042509 570 NFMYLRFLKLSKAE-IVE--LPETCCELFNLQTLEMEDC 605 (892)
Q Consensus 570 ~l~~L~~L~L~~~~-i~~--lp~~i~~L~~L~~L~L~~~ 605 (892)
.++.|+.|.+.++. +.. +-.....+++|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 36677777777664 443 3344556677777777763
No 382
>PRK06547 hypothetical protein; Provisional
Probab=94.65 E-value=0.037 Score=52.86 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+|+|.|.+|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 383
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.65 E-value=0.031 Score=58.50 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=43.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..|+|.++.++++++.+..........-+|+.++|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998765543445678999999999999999999887
No 384
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.62 E-value=0.55 Score=47.83 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=68.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
.+.+.++|+.|+|||+-++.+++. .+..+.+..+..+....+...+........ ..........+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 348899999999999999999983 223334566666777766666666554433 233445566666777888
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCCC
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMNG 302 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~~ 302 (892)
.-+|++|....-....++.++......
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhh
Confidence 899999999766666677776654443
No 385
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.61 E-value=0.13 Score=56.13 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-HHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD-EFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
...++|+|..|+|||||++.+.... ..+.++++-+++... +.++...++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 225666676766443 344555544331111 11111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...-.+.+++ +|++.|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222355555 689999999998
No 386
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.60 E-value=0.13 Score=56.10 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=35.9
Q ss_pred CCceecchhhHHHHHHHHh-------c--CCc--c-cccceEEEEEEecCCchHHHHHHHHhC
Q 042509 168 EDRVCGRDDEKNKLIRKLL-------S--ESS--E-EQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~-------~--~~~--~-~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..++|.++.++.+...+. . ... + .......+.++|++|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4568999999988866552 1 000 0 001135799999999999999999986
No 387
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.60 E-value=0.061 Score=58.00 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=50.0
Q ss_pred CCceecchhhHHHHHHHHhcC--------CcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCC
Q 042509 168 EDRVCGRDDEKNKLIRKLLSE--------SSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSD 236 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~ 236 (892)
...++|.++.++.+..++... ........+.+.++|++|+|||+||+.+... ....| +...|...+.
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 346899999999988777531 0000012367899999999999999999883 33333 2222222111
Q ss_pred -CCCHHHHHHHHHHhc
Q 042509 237 -PFDEFSVAKSIIEGL 251 (892)
Q Consensus 237 -~~~~~~~~~~i~~~l 251 (892)
..+...+.+.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 225556666665544
No 388
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.59 E-value=0.034 Score=49.12 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcccc
Q 042509 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFK 227 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 227 (892)
|.|.|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5666674
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.58 E-value=0.099 Score=51.08 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=30.6
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
++.|.|.+|+|||+||.++....- ..=..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999998877421 2224577887654 45555444
No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.58 E-value=0.16 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.57 E-value=0.029 Score=56.27 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 042509 199 ISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~ 218 (892)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999977
No 392
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.06 Score=58.37 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=37.6
Q ss_pred Cceecchh---hHHHHHHHHhcCCcc---cccceEEEEEEecCCchHHHHHHHHhCCh
Q 042509 169 DRVCGRDD---EKNKLIRKLLSESSE---EQKAVQTISVVGMGGIGKTTLAQMAYNDP 220 (892)
Q Consensus 169 ~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 220 (892)
+++-|-|+ |+++|++.|.++..- +..-++-|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45677765 567778888765420 11235678999999999999999999854
No 393
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.55 E-value=0.1 Score=52.49 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH-hhcccCcHHHHHHHHHHHHhhhchhhHHHHHH
Q 042509 9 VLERLISTTVGEAEEQVRLVVGVEQDVEKLKRNFRAIQAVLVDA-EQKQVKEETVRLWLDQLKDASYDMEDVLDEWI 84 (892)
Q Consensus 9 ~~~~~~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~~~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~ed~lD~~~ 84 (892)
.|..+++.|-.+.......+.-++.+++-+|.+++.+|.||+.. +..+...+....+..++-+.||++|.++|.+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 34556666655554444555668999999999999999999977 44343334488999999999999999999774
No 394
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.55 E-value=0.1 Score=55.71 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=49.2
Q ss_pred ceEEEEEEecCCchHHH-HHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 042509 195 AVQTISVVGMGGIGKTT-LAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 272 (892)
+.+||.+||+.|+|||| ||+.++.... ...=..+..++... .....+-++..++-++.+-....+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 36899999999999975 5555555221 12223566666543 2334455555555555544444455555444433 2
Q ss_pred cCCeEEEEEecCC
Q 042509 273 AKKKFLLVLDDVW 285 (892)
Q Consensus 273 ~~kr~LlVlDd~w 285 (892)
++. =+|.+|-+-
T Consensus 280 ~~~-d~ILVDTaG 291 (407)
T COG1419 280 RDC-DVILVDTAG 291 (407)
T ss_pred hcC-CEEEEeCCC
Confidence 333 355567664
No 395
>PRK06762 hypothetical protein; Provisional
Probab=94.53 E-value=0.024 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 396
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.50 E-value=0.042 Score=49.47 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 176 DEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
++.+++-+.|...- ....+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555554322 12458999999999999999999984
No 397
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.11 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..|.+.|.+|+||||+|+++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999988
No 398
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.22 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998874
No 399
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.44 E-value=0.081 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|+|.+|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.44 E-value=0.071 Score=55.27 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=40.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
..+++.|+|.+|+|||++|.++.. +...+...++||+..+ +..++.+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 468999999999999999988888 4555678899998876 45555555544
No 401
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.43 E-value=0.1 Score=59.80 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=70.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH-HH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK-SI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~-~i 247 (892)
+.++|....+.++++.+..-.. .-.-|.|+|..|+||+++|+.+.... ...-...+.++++... .+.+. .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~--~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP--DDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC--HHHHHHHh
Confidence 3689999888888877753221 12348899999999999999986531 1111233455555433 22222 22
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCch
Q 042509 248 IEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRKE 315 (892)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 315 (892)
.-...+....... ...-+.+ ....=.|+||+++.-.......+...+..+. ...+||.||...
T Consensus 276 FG~~~~~~~~~~~---~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALE---GKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCccc---CCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 2111111000000 0000111 1122347899997655555556666665431 134788877643
No 402
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.43 E-value=0.21 Score=50.90 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=55.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhh--hcccceeEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCCCHH---
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDV--RNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGE-------TSNLGSLQ--- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 262 (892)
-+-++|.|..|+|||+|+.++.+...+ +.+-+.++++-+++.. +..++..++...=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356899999999999999998875321 1234678888887754 4455555554431111 01111111
Q ss_pred --HHHHHHHHHh--c-CCeEEEEEecC
Q 042509 263 --SYLLRIYEAI--A-KKKFLLVLDDV 284 (892)
Q Consensus 263 --~~~~~l~~~l--~-~kr~LlVlDd~ 284 (892)
...-.+.+++ + +++.|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1222355665 3 78999999998
No 403
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.36 Score=53.60 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=85.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
..-|.++|++|.|||-||++|++. .+.+| ++|... +++... + .++.....+..++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkY---V------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKY---V------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHH---h------hhHHHHHHHHHHHhhcCC
Confidence 456889999999999999999994 44444 444321 111111 0 111222223333344567
Q ss_pred eEEEEEecCCC-----CCcCCh------hhhhhhcCC--CCCCcEEEEEcCchhHHh-h-c--cC-CceEeCCCCCHHHH
Q 042509 276 KFLLVLDDVWN-----DDRTKW------EPLNHCLMN--GQCGSKILVTTRKETVSR-M-M--ES-TNVMFIEELSESEC 337 (892)
Q Consensus 276 r~LlVlDd~w~-----~~~~~~------~~l~~~l~~--~~~gs~iivTtr~~~v~~-~-~--~~-~~~~~l~~L~~~~~ 337 (892)
+++|+||.++. .+...| .+++.-+.. ...|--||-+|..+++-. . + +. .....+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 89999999853 111222 223333332 234666676665544322 1 1 22 44666777788889
Q ss_pred HHHHHHHhhCCCCC-CCCchHHHHHHHHHHhcCCch
Q 042509 338 WRLFQQLAFFGRSP-SECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 338 ~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~G~P 372 (892)
.++++........+ ..+-++.++++. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99998877542222 222356665543 3555543
No 404
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.42 E-value=0.16 Score=55.01 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=48.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 269 (892)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+ +..++.. -++.++.... ...+++++...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3579999999999999999998873 333334677887644 2333322 2333432211 1233444444332
Q ss_pred HHhcCCeEEEEEecC
Q 042509 270 EAIAKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l~~kr~LlVlDd~ 284 (892)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=94.36 E-value=0.18 Score=50.58 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=34.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
...++.|.|.+|+|||++|.++.... .+ .=..++|++... +..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEe--s~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEY--TEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeC--CHHHHHHHHH
Confidence 34689999999999999999887642 22 234577777655 3455555543
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.35 E-value=0.052 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 407
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.34 E-value=0.15 Score=49.01 Aligned_cols=118 Identities=17% Similarity=-0.014 Sum_probs=65.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC---CCCHHHHHHHH--HHhc--cCCCC-CCCC-------
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD---PFDEFSVAKSI--IEGL--EGETS-NLGS------- 260 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i--~~~l--~~~~~-~~~~------- 260 (892)
...|-|+|..|-||||.|.-+.- +..++=-.+..+..-. .......++.+ +.-. +.... ...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999976666 3322222233333222 23444444432 1111 00000 0011
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEecCCC---CCcCChhhhhhhcCCCCCCcEEEEEcCch
Q 042509 261 LQSYLLRIYEAIA-KKKFLLVLDDVWN---DDRTKWEPLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 261 ~~~~~~~l~~~l~-~kr~LlVlDd~w~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 315 (892)
..+.....++.+. ++-=++|||.+-. ...-..+.+...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122333444554 4455999999832 22334566777777777788999999975
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.18 Score=55.11 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=45.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
...+++++|..|+||||++.++..........+.+.++.... .....+-+....+.++.+.....+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 357999999999999999988876311122223344444322 122333344444444433322333333333332 244
Q ss_pred CCeEEEEEecC
Q 042509 274 KKKFLLVLDDV 284 (892)
Q Consensus 274 ~kr~LlVlDd~ 284 (892)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34566665
No 409
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.33 E-value=0.21 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999763
No 410
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.32 E-value=0.42 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..|++|+|+.|+|||||.+-+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 46999999999999999998876
No 411
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.02 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=16.2
Q ss_pred CCCEEeccCcCCccccchhhhcc
Q 042509 596 NLQTLEMEDCCNLKRLPQEIGKL 618 (892)
Q Consensus 596 ~L~~L~L~~~~~~~~lp~~i~~l 618 (892)
+|++||+++|. ++.+|.++++|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 58889999886 66888776543
No 412
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.29 E-value=0.14 Score=56.05 Aligned_cols=85 Identities=22% Similarity=0.224 Sum_probs=48.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCC-------CCCCCCHHH----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGE-------TSNLGSLQS---- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 263 (892)
...++|+|..|+|||||++.+..... -+..+.+.+.+ .....++....+..-... ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 46799999999999999999987422 12333333333 333444544443322111 111111221
Q ss_pred -HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 -YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 -~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ ++++.|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222355665 689999999998
No 413
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.27 E-value=0.032 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 414
>PRK04040 adenylate kinase; Provisional
Probab=94.26 E-value=0.032 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999988
No 415
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.25 E-value=0.27 Score=51.94 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=49.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
...++|+|..|.|||||.+.+..... -+..+..-+.. ..+..+........-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999988422 23344444443 334555555444432111 11111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.....+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222344554 689999999998
No 416
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.25 E-value=0.081 Score=55.44 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=51.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 269 (892)
..+++-|+|..|+||||||-.+.. .....-..++|+.....++... ++.++.+.. .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 457999999999999999998887 4444445789999877766643 333332211 1234455555555
Q ss_pred HHhc-CCeEEEEEecC
Q 042509 270 EAIA-KKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l~-~kr~LlVlDd~ 284 (892)
..++ +..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 44568899988
No 417
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.24 E-value=0.17 Score=49.73 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=58.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEE---------------EeCCCC---CHHHHHHHHHHhccCCCCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWV---------------CVSDPF---DEFSVAKSIIEGLEGETSN 257 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---------------~~s~~~---~~~~~~~~i~~~l~~~~~~ 257 (892)
..+++|.|..|.|||||.+.+..-.. .......+++ .+.+.. ....+...+.-.... ..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RG 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--cc
Confidence 46899999999999999999987420 0111121111 111111 111222222110000 01
Q ss_pred CCCHHHHHHHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCC-CCCCcEEEEEcCch
Q 042509 258 LGSLQSYLLRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 258 ~~~~~~~~~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~ 315 (892)
...-+...-.+...+..++-++++|+.-. -|......+...+.. ...|..||++|.+.
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 11222233345666667777999999743 122333444444433 12366788888765
No 418
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.16 Score=50.07 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=39.7
Q ss_pred CceecchhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhccc
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF 226 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 226 (892)
+++-|-.++++++.+....+-- -+-...+-|..+|++|.|||-+|++|.| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 4567778888888776643210 0122456788999999999999999999 455444
No 419
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.38 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998764
No 420
>PRK04328 hypothetical protein; Provisional
Probab=94.23 E-value=0.13 Score=52.85 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=33.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
...++.|.|.+|.|||+||.++... ....-...+|++..+ +..++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC--CHHHHHH
Confidence 4579999999999999999887663 222345688888766 3444433
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.19 E-value=0.023 Score=67.71 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=83.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---NLGSLQSYLLRIYEAI 272 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l 272 (892)
..++.|+|+.|.||||+.+.+.-.... .....+|.+.... ....+..+...++.... .......-...+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~-~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHS-EIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCccc-cccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 479999999999999999988763100 1111122222110 00111222111111100 0111111122222333
Q ss_pred c--CCeEEEEEecCCCC-CcCChhhh----hhhcCCCCCCcEEEEEcCchhHHhhccCCceEeCCCCCHH-HHHHHHHHH
Q 042509 273 A--KKKFLLVLDDVWND-DRTKWEPL----NHCLMNGQCGSKILVTTRKETVSRMMESTNVMFIEELSES-ECWRLFQQL 344 (892)
Q Consensus 273 ~--~kr~LlVlDd~w~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 344 (892)
. .++-|+++|..-.. ++.....+ ...+. ..|+.+|+||....+.........+.-..+..+ +... + .+
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p-~Y 473 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P-TY 473 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e-EE
Confidence 2 47899999998542 22222223 22222 247889999999877554322211111111111 1000 0 01
Q ss_pred hhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhh
Q 042509 345 AFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSIL 395 (892)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~ 395 (892)
-+..+.+. ...|-.|++++ |+|-.+.--|..+... ...++..++
T Consensus 474 kl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 517 (771)
T TIGR01069 474 KLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLI 517 (771)
T ss_pred EECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHH
Confidence 11111111 23466777776 7888777777666433 233444444
No 422
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.12 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999986
No 423
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.14 E-value=0.22 Score=54.64 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=51.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCC-------CCCCCCHHH----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGE-------TSNLGSLQS---- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 263 (892)
...++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+.+.+....=... ..+......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998742 3445666666553 33435555543211000 011111221
Q ss_pred -HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 -YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 -~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ ++++.|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122355555 689999999999
No 424
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.13 E-value=0.24 Score=50.25 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=29.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD 236 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 236 (892)
...++.|.|.+|+||||||.++... ....-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 4579999999999999999887652 112334678887644
No 425
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.28 Score=50.04 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHHHhcCCeEEEEEecCCC-CCcCChhhhhhhcCCCCCCcEEEEEcCchhHHhh
Q 042509 266 LRIYEAIAKKKFLLVLDDVWN-DDRTKWEPLNHCLMNGQCGSKILVTTRKETVSRM 320 (892)
Q Consensus 266 ~~l~~~l~~kr~LlVlDd~w~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 320 (892)
-.+...+..++-++++|+... -|......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345666777888999999753 2223333444444332226678888877665543
No 426
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.07 E-value=0.16 Score=50.36 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHhcCCeEEEEEecCCCC-CcCChh-hhhhhcCCCC-C-CcEEEEEcCchhHHhh
Q 042509 267 RIYEAIAKKKFLLVLDDVWND-DRTKWE-PLNHCLMNGQ-C-GSKILVTTRKETVSRM 320 (892)
Q Consensus 267 ~l~~~l~~kr~LlVlDd~w~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtr~~~v~~~ 320 (892)
.+...+..++-++++|+.-.. ++.... .+...+.... . |..||++|.+.+....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 355666778889999998431 222334 4444443322 2 5568888888766543
No 427
>PRK00625 shikimate kinase; Provisional
Probab=94.06 E-value=0.033 Score=53.28 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|.++|++|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999977
No 428
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.2 Score=54.97 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=51.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-HHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD-EFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
...++|+|..|+|||||++++++.. ..+.++++-+++... +.+...+.+..-... ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998742 224556666666443 334444444332111 11111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222355555 689999999999
No 429
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.00 E-value=0.25 Score=52.29 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=33.3
Q ss_pred eEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHH
Q 042509 326 VMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAA 375 (892)
Q Consensus 326 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 375 (892)
.+++.+++.+|+..++..++-.+--... ..-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~-~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSR-VDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccC-CCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877643322111 222445667777779998643
No 430
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.98 E-value=0.097 Score=56.49 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.|.|+.|+||||+.+.+.. .+..+...+++. +.++.. ...... ..+-.......+.......++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E--~~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIE--YVHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChh--hhccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 36899999999999999999877 343344444443 222211 111000 000000001111223455677778888
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhH
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETV 317 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 317 (892)
+=.|++|.+- +...+...... ...|..|+.|.....+
T Consensus 196 pd~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 8899999994 34444432222 2345567766665443
No 431
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.92 E-value=0.3 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.91 E-value=0.17 Score=52.14 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD 236 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 236 (892)
..+++.|.|.+|+|||++|.++.... .+ .=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45799999999999999999876631 12 234678888764
No 433
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.89 E-value=0.045 Score=54.88 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=61.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---NLGSLQSYLLRIYEA 271 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 271 (892)
+.+++.|+|..|.||||+.+.+..-.- .+..-.+|.+.. ........++..++.... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~---la~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL---MAQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---HHHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 357999999999999999988765211 011111222221 001122223333322211 112222233333344
Q ss_pred h--cCCeEEEEEecCCCC----Cc--CChhhhhhhcCCCCCCcEEEEEcCchhHHhhcc
Q 042509 272 I--AKKKFLLVLDDVWND----DR--TKWEPLNHCLMNGQCGSKILVTTRKETVSRMME 322 (892)
Q Consensus 272 l--~~kr~LlVlDd~w~~----~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 322 (892)
+ ..++-|+++|..... |. ..|. +...+.. ..|+.+|+||...++...+.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 4 357889999998321 11 1121 2123322 24678999999877766544
No 434
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.88 E-value=0.24 Score=58.06 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=49.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
.+|++++|+.|+||||.+.++............+..+.... .....+-++...+.++.+.....+..++...+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 47999999999999999999887422121123455554332 112344555555555543333334445444443 3444
Q ss_pred CeEEEEEecCC
Q 042509 275 KKFLLVLDDVW 285 (892)
Q Consensus 275 kr~LlVlDd~w 285 (892)
+. +|++|-.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 66677663
No 435
>PRK08149 ATP synthase SpaL; Validated
Probab=93.86 E-value=0.25 Score=54.09 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=51.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
...++|+|..|+|||||++.++... .-+.+++..+... .+..++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4678999999999999999998742 2233444444432 34555656665532211 11111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.....+.+++ ++|+.|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 2223345555 689999999998
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.86 E-value=0.074 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 437
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.84 E-value=0.29 Score=50.39 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=47.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc-
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA- 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 273 (892)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++...+.++.+.....+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 468999999999999999988763 22221245556553221 12222233333333222122344444444433222
Q ss_pred CCeEEEEEecCCC
Q 042509 274 KKKFLLVLDDVWN 286 (892)
Q Consensus 274 ~kr~LlVlDd~w~ 286 (892)
++.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2456788898743
No 438
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.83 E-value=0.032 Score=48.67 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998884
No 439
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.83 E-value=0.22 Score=55.02 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=55.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
-+-++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++..++...-... ..+.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 45789999999999999988888532 2356778888777643 3445555554421111 11111111
Q ss_pred HHHHHHHHHh--c-CCeEEEEEecC
Q 042509 263 SYLLRIYEAI--A-KKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~-~kr~LlVlDd~ 284 (892)
.....+.+++ + +++.|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2233355666 3 89999999999
No 440
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.83 E-value=0.087 Score=51.13 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++++|-+..+..+.-.... .+-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988888888766653 35699999999999999998876
No 441
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.82 E-value=0.21 Score=55.07 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=54.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
-+-++|.|.+|+|||||+.++...... .+=+.++++-+++.. .+.++..++...=... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999988764221 112467777776643 4455666655431111 11111122
Q ss_pred HHHHHHHHHh---cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
...-.+.+++ +++++|+++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223356666 689999999998
No 442
>PLN02348 phosphoribulokinase
Probab=93.79 E-value=0.29 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|.|.+|+||||+|+.+.+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999988
No 443
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.79 E-value=0.034 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 444
>PRK15453 phosphoribulokinase; Provisional
Probab=93.79 E-value=0.27 Score=50.27 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=42.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC--CHHHHHHHHHH--hc--cCCC--CCCCCHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF--DEFSVAKSIIE--GL--EGET--SNLGSLQSYLL 266 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~--~l--~~~~--~~~~~~~~~~~ 266 (892)
+..+|+|.|.+|+||||+|+.+.+ ..+..=...+.++..... +..+.-..+.. .- .-+. ++.-+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999998875 222111123444433322 22222222211 11 1112 45567777777
Q ss_pred HHHHHhcC
Q 042509 267 RIYEAIAK 274 (892)
Q Consensus 267 ~l~~~l~~ 274 (892)
.++...++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 445
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.78 E-value=0.36 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999885
No 446
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.44 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|.|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.76 E-value=0.042 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 448
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.17 Score=53.73 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=51.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCC-----CCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSN-----LGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 269 (892)
...++.|-|.+|||||||.-++.. +....- .++||+-.+. ..++ +--++.++..... ..+++...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 357999999999999999999988 444333 6778765443 3222 2223444432221 234444444433
Q ss_pred HHhcCCeEEEEEecCC
Q 042509 270 EAIAKKKFLLVLDDVW 285 (892)
Q Consensus 270 ~~l~~kr~LlVlDd~w 285 (892)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 3 678899999983
No 449
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.72 E-value=0.22 Score=48.87 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=27.3
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhccc--------ceeEEEEeCCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHF--------KIRMWVCVSDP 237 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 237 (892)
.++.|+|.+|+||||++.++....-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999998877743222222 25778876654
No 450
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.72 E-value=0.099 Score=52.22 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+..++++.+.... ++..+|+|.|.||.|||||+..+...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4556666666543 35789999999999999999888873
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.71 E-value=0.035 Score=54.89 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 452
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.71 E-value=0.17 Score=51.22 Aligned_cols=76 Identities=13% Similarity=-0.027 Sum_probs=41.6
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC--HHHHHHHHHHh----ccCCC--CCCCCHHHHHHHHH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD--EFSVAKSIIEG----LEGET--SNLGSLQSYLLRIY 269 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~l~ 269 (892)
+|+|.|..|+||||+++.+.. ..+..=..++.++....+. ....-..+.+. ..-+. ++.-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876 2222111244444333222 11222222221 11122 34566777777777
Q ss_pred HHhcCC
Q 042509 270 EAIAKK 275 (892)
Q Consensus 270 ~~l~~k 275 (892)
...+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776654
No 453
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.69 E-value=0.057 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999999873
No 454
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.67 E-value=0.036 Score=54.02 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 455
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.67 E-value=0.12 Score=57.71 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=48.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccccee-EEEEeCCCCCHHHHHHHHHHhccC----CCCCCCC-----HHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIR-MWVCVSDPFDEFSVAKSIIEGLEG----ETSNLGS-----LQSYL 265 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~i~~~l~~----~~~~~~~-----~~~~~ 265 (892)
-.-..|+|.+|+|||||++.+.+.. ...+-++. +.+-|.+..... .++-+.+.. ...+... ...+.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 4568899999999999999998831 12233333 345555543322 222232311 1111111 12233
Q ss_pred HHHHHHh--cCCeEEEEEecC
Q 042509 266 LRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 266 ~~l~~~l--~~kr~LlVlDd~ 284 (892)
-.+.+++ +++.+||++|++
T Consensus 492 i~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCc
Confidence 3445555 689999999998
No 456
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.66 E-value=0.13 Score=55.27 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=66.6
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
.++|+++.+..+...+.... .+.+.|.+|+|||+||+.+.. .... ..++|.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhH
Confidence 48899888888887777643 488999999999999999988 3332 3456666666666665544332
Q ss_pred hcc---CCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcC
Q 042509 250 GLE---GETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLM 300 (892)
Q Consensus 250 ~l~---~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~ 300 (892)
... .......+.. .+..-+.++.+|.++...+..-..+...+.
T Consensus 92 ~~~~~~~~~~~~~~gp--------l~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLEPGEFRFVPGP--------LFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhccCCeEEEecCC--------cccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 221 0000000000 001111588999998766555555555443
No 457
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.63 E-value=0.069 Score=57.50 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=55.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhh----hcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDV----RNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYE 270 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 270 (892)
..+=+.|+|..|.|||.|.-.+|+...+ +-||..- +.++.+.+.+.- .... ....+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~F----------m~~vh~~l~~~~----~~~~----~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEF----------MLDVHSRLHQLR----GQDD----PLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHH----------HHHHHHHHHHHh----CCCc----cHHHHHH
Confidence 4577999999999999999999996332 3344211 122233332221 1112 2334455
Q ss_pred HhcCCeEEEEEecCCCCCcCChhhhhhhcCC-CCCCcEEEEEcCc
Q 042509 271 AIAKKKFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 271 ~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs~iivTtr~ 314 (892)
.+.++..||.||.+.-.|..+-.-+...|.. ...|. |||+|.+
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCC
Confidence 5666777999999864443332222222222 23465 5555544
No 458
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.61 E-value=0.4 Score=52.96 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=52.6
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhh-----hcccceeEEEEeCCCCCHHHHHHHHHHhccC-CC-------CCCCCH
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDV-----RNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG-ET-------SNLGSL 261 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~-------~~~~~~ 261 (892)
.+-++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++....-.-+.+.+++-+. .. .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456899999999999997 666664322 1234578888888865443334444443321 10 111111
Q ss_pred HH-----HHHHHHHHh--cCCeEEEEEecC
Q 042509 262 QS-----YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 262 ~~-----~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.+ ..-.+.+++ +++..|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 222344555 689999999998
No 459
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.61 E-value=0.15 Score=59.27 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=50.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccceeEEEEeCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+ .+.. .|...+++. ....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe-CCCCCchHHHHHH
Confidence 46899999888888777643 2456999999999999999987 3433 333334332 2334566667777
Q ss_pred HHhccC
Q 042509 248 IEGLEG 253 (892)
Q Consensus 248 ~~~l~~ 253 (892)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 776654
No 460
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.60 E-value=0.27 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...++.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 461
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.086 Score=47.25 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=41.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
..-|.|.|-+|+||||+|.++..- . ..-|+++|.-.....++...-++.. +...+.+.+...|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhc
Confidence 346889999999999999999862 1 2347777764433333333222211 2334556666666666644
No 462
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.57 E-value=0.043 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999983
No 463
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.56 E-value=0.09 Score=53.25 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 179 NKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
.+++..+.... ++..+|+|.|.||+|||||.-.+...-+-++|=-.++=|.-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45555555443 46789999999999999999888774433444334445555555554444443
No 464
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.56 E-value=0.14 Score=48.63 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=44.1
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC--Ce
Q 042509 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK--KK 276 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 276 (892)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ ..+.|.+.....+ ......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~-~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRP-AHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCC-CCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999998763 22356777666666543 4444333222222 111111222233333321 23
Q ss_pred EEEEEecC
Q 042509 277 FLLVLDDV 284 (892)
Q Consensus 277 ~LlVlDd~ 284 (892)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.54 E-value=0.25 Score=55.08 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=44.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 274 (892)
.+|++++|..|+||||++.+++.....+..-..+..+.... .....+-++...+..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987322221122345554432 12233334444444433222122222222222 23344
Q ss_pred CeEEEEEecC
Q 042509 275 KKFLLVLDDV 284 (892)
Q Consensus 275 kr~LlVlDd~ 284 (892)
+ ..+++|-.
T Consensus 335 ~-d~VLIDTa 343 (484)
T PRK06995 335 K-HIVLIDTI 343 (484)
T ss_pred C-CeEEeCCC
Confidence 4 36667776
No 466
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.058 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988876
No 467
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.51 E-value=0.18 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
.++.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 468
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.50 E-value=0.35 Score=49.37 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=49.4
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhhhccccee-EEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCCCHHH--
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDVRNHFKIR-MWVCVSDPF-DEFSVAKSIIEGLEGE-------TSNLGSLQS-- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 263 (892)
-+-++|.|.+|+|||+|| +.+.+. .+-+.+ +++-+.+.. ...++.+.+...-... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 456899999999999996 666552 123444 677776653 3445555554321111 111111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 ---YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 ---~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ +++..|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122344444 689999999999
No 469
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.50 E-value=0.34 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999877
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=93.49 E-value=0.41 Score=52.46 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=49.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCCC-------CCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGET-------SNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 262 (892)
...++|+|..|+|||||.+.+.... ..+..+++.+++. ....+.+.+......... .+.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999998742 2244444444443 233444444443322211 1111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...-.+.+++ +|+++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 2223355665 689999999999
No 471
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.46 E-value=0.086 Score=48.41 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD 236 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 236 (892)
++|.|+|..|+|||||++.+.+.. .+..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999942 234455555665544
No 472
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.46 E-value=0.29 Score=53.63 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=49.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCCCHH-----
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKSIIEGLEGE-------TSNLGSLQ----- 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 262 (892)
...++|+|..|.|||||++.+..... .+..+.+.+.+.. ...++.......=... ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999887421 2344455555533 3444444443321110 11111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 ~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...-.+.+++ ++++.|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1222345555 689999999998
No 473
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.43 E-value=0.3 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.++|..|+||||++.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 474
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.43 E-value=0.46 Score=53.19 Aligned_cols=82 Identities=22% Similarity=0.213 Sum_probs=47.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 269 (892)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+ +..++... ++.++.... ...+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3569999999999999999998874 322223578887654 33333222 333432111 1233444444332
Q ss_pred HHhcCCeEEEEEecC
Q 042509 270 EAIAKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l~~kr~LlVlDd~ 284 (892)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557888887
No 475
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.42 E-value=0.22 Score=56.78 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3589999888888777653321 2346889999999999999999884
No 476
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.42 E-value=0.083 Score=51.92 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 477
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.40 E-value=0.047 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 478
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.37 E-value=0.13 Score=58.51 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=37.6
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..++|....++++.+.+..-.. ...-|.|.|..|.||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999999988888754321 2356899999999999999999874
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.36 E-value=0.42 Score=48.91 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
...++.|.|.+|+|||+++.+++.+.- ..+=..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 346999999999999999988876422 22123577777654 6667777665443
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.34 E-value=0.28 Score=53.96 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=49.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHHhccCC-------CCCCCCHH----
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIEGLEGE-------TSNLGSLQ---- 262 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 262 (892)
+...++|.|..|+|||||++.+..... -+..+.+-+.+ ...+.++.+.+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999987432 12333333443 334444444444321111 11111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEecC
Q 042509 263 -SYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 263 -~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...-.+.+++ ++++.|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1222355555 689999999998
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.33 E-value=0.057 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999883
No 482
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.30 E-value=0.11 Score=52.55 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=50.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCC---------------CCC--
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGE---------------TSN-- 257 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~-- 257 (892)
..+++.|.|.+|+|||+|+.++... ..+..=+.++||+..+ ..+++.+.+- .++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4569999999999999999887653 1222124578888755 3445544433 22210 000
Q ss_pred ---CCCHHHHHHHHHHHhcC-CeEEEEEecC
Q 042509 258 ---LGSLQSYLLRIYEAIAK-KKFLLVLDDV 284 (892)
Q Consensus 258 ---~~~~~~~~~~l~~~l~~-kr~LlVlDd~ 284 (892)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666666542 3367888876
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.29 E-value=0.05 Score=51.72 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 042509 199 ISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~ 219 (892)
|.|.|.+|+|||||++++++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999884
No 484
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.28 E-value=0.12 Score=59.85 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=55.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+.++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.- ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45899999988888777542 358899999999999999988741 2334577888655 4457777788887
Q ss_pred HhccC
Q 042509 249 EGLEG 253 (892)
Q Consensus 249 ~~l~~ 253 (892)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66543
No 485
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.27 E-value=0.2 Score=59.51 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+.++|....+.++.+.+..-.. ...-|.|+|..|+||+++|+.+.+... ..-...+.|++.... ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhc
Confidence 3588999888888877764332 223478999999999999999987421 111123445554432 222333333
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
....+.... ... ..+ -....=.|+||++..-.......+...+..+. ...+||.||..
T Consensus 398 g~~~~~~~~-~~~----g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-GRL----SKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-CCC----Cce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 322111000 000 000 01123358999997655555566666664332 13467777654
No 486
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.26 E-value=0.74 Score=49.49 Aligned_cols=74 Identities=26% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCcc---cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeC-CCCCHHHHHHHHHHhccC
Q 042509 178 KNKLIRKLLSESSE---EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVS-DPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~ 253 (892)
.++|++.|-..... ....+.||-.+|.-|.||||-|-++.+. ++.+=..+.-|++. ..+-..+-++.+.++++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~--lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY--LKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH--HHHcCCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 45566666531111 1234789999999999999999888883 33321123333221 123333445555555543
No 487
>PRK08760 replicative DNA helicase; Provisional
Probab=93.24 E-value=3.8 Score=46.30 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
...++.|-|.+|+|||++|..+....-.+... .+++++ -.-+..++...++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~fS--lEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVFS--MEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEEe--ccCCHHHHHHHHHHhh
Confidence 35689999999999999999888743222222 355544 3446667777776543
No 488
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.23 E-value=0.054 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 489
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.22 E-value=0.054 Score=29.25 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=5.6
Q ss_pred CcceEEcCCCCCCccc
Q 042509 573 YLRFLKLSKAEIVELP 588 (892)
Q Consensus 573 ~L~~L~L~~~~i~~lp 588 (892)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 490
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.22 E-value=0.44 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=23.0
Q ss_pred cceEEEEEEecCCchHHHHHHHHhC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+..++.|+|.+|+|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999988
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.21 E-value=0.42 Score=54.32 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 247 (892)
..+++.|.|.+|+|||||+.++... ...+=..++|++..+ +..++.+.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH
Confidence 4679999999999999999988874 323334577776654 455555554
No 492
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.21 E-value=0.28 Score=48.26 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 493
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.19 E-value=0.13 Score=54.07 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=34.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
.+++...|.||+||||+|.+..- ........++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988555 33333344777777666666555544
No 494
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.18 E-value=0.071 Score=51.89 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=28.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC 233 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 233 (892)
.+++.|+|+.|+|||||+++++. ....+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999988 4556675555544
No 495
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.18 E-value=0.056 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 496
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.71 Score=45.49 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=40.9
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhccc
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF 226 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 226 (892)
+++-|-+..++++++.+.-+-.. +-...+-+..+|++|.|||-+|++... +....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH
Confidence 46889999999999887543210 122456788999999999999999877 344444
No 497
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.12 E-value=0.28 Score=57.64 Aligned_cols=84 Identities=19% Similarity=0.121 Sum_probs=56.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 269 (892)
..+++-|+|.+|+|||||+.+++.. ....=..++|+...+.++.. .+++++.... .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4689999999999999999776663 22233567899887776643 5555554321 2234455555555
Q ss_pred HHhc-CCeEEEEEecCC
Q 042509 270 EAIA-KKKFLLVLDDVW 285 (892)
Q Consensus 270 ~~l~-~kr~LlVlDd~w 285 (892)
..++ ++--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5553 466789999983
No 498
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.11 E-value=0.13 Score=54.32 Aligned_cols=156 Identities=18% Similarity=0.253 Sum_probs=80.3
Q ss_pred ceecchhhHHHHHHHHhcCCc-----------ccccceEEEEEEecCCchHHHHHHHHhCChhhhc--cc---ceeEEE-
Q 042509 170 RVCGRDDEKNKLIRKLLSESS-----------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN--HF---KIRMWV- 232 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f---~~~~wv- 232 (892)
+..|-..+...|.+..-.... -.....-+++|+|..|+||||+.+++........ .| ...+=|
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 455666677777665532210 0122346899999999999999998876321110 11 011111
Q ss_pred --------Ee--CCCCCHHHHHHHHHHhccC-------------CC--------CCCCCHHHHHHHHHHHhcCCeEEEEE
Q 042509 233 --------CV--SDPFDEFSVAKSIIEGLEG-------------ET--------SNLGSLQSYLLRIYEAIAKKKFLLVL 281 (892)
Q Consensus 233 --------~~--s~~~~~~~~~~~i~~~l~~-------------~~--------~~~~~~~~~~~~l~~~l~~kr~LlVl 281 (892)
.- ...++...++.++.+..+. .. .+..+-+.-..+|.+.+..+.=+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 11 1123323444444333222 10 11222333445677888888888999
Q ss_pred ecCCCCCcCChh--hhhhhcCCC--CCCcEEEEEcCchhHHhhccCCce
Q 042509 282 DDVWNDDRTKWE--PLNHCLMNG--QCGSKILVTTRKETVSRMMESTNV 326 (892)
Q Consensus 282 Dd~w~~~~~~~~--~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~ 326 (892)
|.+... .+... .+...+... ..|+.+++.|+.+++.+.+.....
T Consensus 532 DEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 532 DEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 987421 11111 122223221 246777777777888777655443
No 499
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.06 E-value=0.085 Score=64.15 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=72.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCCC----CCHH--HHHHHHHHhccCCCCCCCCHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSDP----FDEF--SVAKSIIEGLEGETSNLGSLQSYLL 266 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~----~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 266 (892)
..-+.|+|.+|.||||+.+.+.-.. ..+++ +..+|+.+... .... .+..-+...+..... ..+...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhH
Confidence 4478999999999999998877631 12222 33444443311 1111 111122222221111 112222
Q ss_pred HHHHHhcCCeEEEEEecCCCCCcCChh----hhhhhcCCCCCCcEEEEEcCchhHHhhccCCceEeCCCCCHHHHH
Q 042509 267 RIYEAIAKKKFLLVLDDVWNDDRTKWE----PLNHCLMNGQCGSKILVTTRKETVSRMMESTNVMFIEELSESECW 338 (892)
Q Consensus 267 ~l~~~l~~kr~LlVlDd~w~~~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 338 (892)
...+.++..++++.+|.+.......-. .+...++ .-+.++||+|+|....-........+.+..+.++...
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 225778899999999998542221111 1222222 2347889999997665544444445556666655544
No 500
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.06 E-value=0.56 Score=51.08 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=62.0
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC---C----CHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP---F----DEFS 242 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~---~----~~~~ 242 (892)
--|||+.+++.+.+.|..-. .++..+-.|.|.-|.|||.+.+.+.+... ...| .++.|.++.. . ....
T Consensus 26 ~~VGr~~e~~~l~~~l~~v~---~G~s~~kfi~G~YGsGKTf~l~~i~~~A~-~~~f-vvs~v~ls~e~~lh~~~g~~~~ 100 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDRVA---DGGSSFKFIRGEYGSGKTFFLRLIRERAL-EKGF-VVSEVDLSPERPLHGTGGQLEA 100 (416)
T ss_pred eeechHHHHHHHHHHHHHHh---CCCCeEEEEEeCCCCcHHHHHHHHHHHHH-HcCC-EEEEEecCCCcccccccccHHH
Confidence 36999999999999886432 24577899999999999999999988432 3344 5777777763 2 5667
Q ss_pred HHHHHHHhccCCC
Q 042509 243 VAKSIIEGLEGET 255 (892)
Q Consensus 243 ~~~~i~~~l~~~~ 255 (892)
++++|++.+....
T Consensus 101 ~Yr~l~~nL~t~~ 113 (416)
T PF10923_consen 101 LYRELMRNLSTKT 113 (416)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999997655
Done!