Query 042509
Match_columns 892
No_of_seqs 603 out of 4039
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-48 4.7E-53 449.4 23.6 316 172-513 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.8E-39 1.3E-43 371.6 18.8 285 170-504 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2E-36 6.9E-41 387.8 25.8 311 167-511 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-33 3.9E-38 331.1 25.9 305 168-508 123-449 (591)
5 4ecn_A Leucine-rich repeat pro 99.9 2.5E-25 8.6E-30 265.3 17.4 337 520-890 441-839 (876)
6 4eco_A Uncharacterized protein 99.9 1.4E-25 4.8E-30 263.7 14.3 332 521-889 200-598 (636)
7 3rgz_A Protein brassinosteroid 99.9 8.5E-26 2.9E-30 271.9 12.2 252 527-805 294-556 (768)
8 3v47_A TOLL-like receptor 5B a 99.9 4.3E-25 1.5E-29 250.2 16.6 336 526-889 29-406 (455)
9 4eco_A Uncharacterized protein 99.9 7E-26 2.4E-30 266.2 9.5 310 541-889 197-577 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 3.3E-25 1.1E-29 264.4 11.2 284 564-889 440-787 (876)
11 2id5_A Lingo-1, leucine rich r 99.9 5.3E-24 1.8E-28 242.6 19.4 294 526-866 31-331 (477)
12 4fmz_A Internalin; leucine ric 99.9 2.6E-24 8.7E-29 234.4 15.6 301 525-889 42-344 (347)
13 2z81_A CD282 antigen, TOLL-lik 99.9 5E-24 1.7E-28 247.7 18.3 142 736-889 356-508 (549)
14 3o6n_A APL1; leucine-rich repe 99.9 6.7E-24 2.3E-28 234.9 15.5 300 525-889 43-350 (390)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-23 6.4E-28 245.9 19.9 338 526-889 31-484 (606)
16 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-23 5.7E-28 254.7 19.8 131 526-656 23-162 (844)
17 3rgz_A Protein brassinosteroid 99.9 4.5E-24 1.5E-28 256.9 14.0 252 525-803 267-529 (768)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-23 3.7E-28 242.9 16.3 343 526-889 20-479 (520)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-23 1E-27 241.2 19.0 344 526-889 51-508 (562)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-23 6.2E-28 246.0 17.1 112 523-634 52-168 (606)
21 3bz5_A Internalin-J, INLJ; leu 99.9 2E-23 7E-28 234.3 16.1 309 523-889 38-350 (457)
22 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-23 5.7E-28 241.4 15.8 333 530-889 3-455 (520)
23 3t6q_A CD180 antigen; protein- 99.9 2.1E-23 7.2E-28 245.4 15.9 129 526-655 32-166 (606)
24 3oja_B Anopheles plasmodium-re 99.9 1.8E-23 6.1E-28 244.4 14.7 299 526-889 50-356 (597)
25 1o6v_A Internalin A; bacterial 99.9 4.6E-23 1.6E-27 233.6 17.3 310 525-889 66-386 (466)
26 4fcg_A Uncharacterized protein 99.9 8.3E-23 2.8E-27 219.4 12.5 222 526-799 80-312 (328)
27 4fmz_A Internalin; leucine ric 99.9 3.6E-22 1.2E-26 217.4 16.7 282 523-866 62-344 (347)
28 3t6q_A CD180 antigen; protein- 99.9 2.2E-22 7.5E-27 236.8 15.9 135 737-888 372-510 (606)
29 2z63_A TOLL-like receptor 4, v 99.9 3.3E-22 1.1E-26 233.6 16.9 128 526-654 27-161 (570)
30 1ziw_A TOLL-like receptor 3; i 99.9 2E-22 7E-27 240.4 15.2 129 526-655 24-158 (680)
31 2z63_A TOLL-like receptor 4, v 99.9 1.5E-22 5E-27 236.6 13.7 121 524-644 49-175 (570)
32 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.6E-27 227.4 13.4 319 530-889 13-382 (455)
33 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-21 4.5E-26 237.9 20.1 326 530-889 7-392 (844)
34 2ft3_A Biglycan; proteoglycan, 99.9 7.2E-22 2.5E-26 213.3 15.6 293 527-865 33-330 (332)
35 3o6n_A APL1; leucine-rich repe 99.9 3.5E-22 1.2E-26 221.1 12.9 283 547-889 42-329 (390)
36 2id5_A Lingo-1, leucine rich r 99.9 2E-21 7E-26 221.2 18.4 274 522-833 51-330 (477)
37 3bz5_A Internalin-J, INLJ; leu 99.9 7.2E-22 2.4E-26 221.8 14.2 268 543-873 35-304 (457)
38 1o6v_A Internalin A; bacterial 99.9 2.2E-21 7.6E-26 219.8 17.7 299 523-875 86-394 (466)
39 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-21 6.5E-26 225.9 17.5 347 526-889 25-484 (549)
40 4fcg_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 209.7 14.6 183 572-799 81-264 (328)
41 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-22 1.1E-26 213.5 8.7 222 527-801 50-281 (313)
42 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-21 7.5E-26 231.5 16.8 122 531-655 8-134 (680)
43 1xku_A Decorin; proteoglycan, 99.9 6.2E-21 2.1E-25 205.8 18.8 293 528-865 32-329 (330)
44 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-22 1.1E-26 213.6 7.4 252 550-873 50-309 (313)
45 3oja_B Anopheles plasmodium-re 99.9 1.7E-21 5.8E-26 227.7 14.1 280 525-866 73-356 (597)
46 1xku_A Decorin; proteoglycan, 99.9 2.2E-21 7.5E-26 209.3 13.8 293 550-888 31-329 (330)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-20 3.8E-25 219.5 18.0 309 522-866 71-508 (562)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-21 9.9E-26 208.5 11.7 294 550-890 33-332 (332)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-20 5.3E-25 222.6 15.3 129 526-655 51-186 (635)
50 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-20 1.5E-24 213.3 17.3 115 527-656 40-155 (622)
51 1jl5_A Outer protein YOPM; leu 99.8 6.3E-20 2.1E-24 205.8 18.1 295 526-889 90-407 (454)
52 1jl5_A Outer protein YOPM; leu 99.8 1.7E-20 6E-25 210.3 10.9 317 526-889 10-368 (454)
53 2z80_A TOLL-like receptor 2, v 99.8 1.1E-20 3.7E-25 205.9 8.5 218 529-800 33-261 (353)
54 2z66_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 192.7 10.3 240 530-833 10-258 (306)
55 2z66_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 192.4 10.5 227 526-803 27-263 (306)
56 2z80_A TOLL-like receptor 2, v 99.8 3.6E-19 1.2E-23 193.8 12.8 252 526-802 51-315 (353)
57 3zyi_A Leucine-rich repeat-con 99.8 7.2E-19 2.5E-23 198.3 14.2 242 531-803 58-305 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 7.8E-19 2.7E-23 197.2 14.0 242 531-803 47-294 (440)
59 3zyj_A Leucine-rich repeat-con 99.8 2.4E-18 8.1E-23 193.3 16.1 240 552-832 45-288 (440)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.4E-23 183.3 11.6 220 530-802 14-239 (285)
61 3zyi_A Leucine-rich repeat-con 99.8 2.3E-18 7.8E-23 194.2 12.4 240 552-832 56-299 (452)
62 4g8a_A TOLL-like receptor 4; l 99.7 3.3E-18 1.1E-22 202.5 14.1 135 535-672 39-178 (635)
63 3o53_A Protein LRIM1, AGAP0063 99.7 2.4E-19 8.2E-24 191.8 1.6 242 548-838 32-277 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-17 5.8E-22 191.6 16.3 115 526-656 60-175 (622)
65 3oja_A Leucine-rich immune mol 99.7 8.5E-19 2.9E-23 198.6 5.1 130 698-863 140-270 (487)
66 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-18 5.3E-23 182.7 5.5 202 526-778 31-238 (285)
67 1z7x_W Ribonuclease inhibitor; 99.7 2E-20 6.8E-25 212.2 -10.1 338 526-889 27-409 (461)
68 1wwl_A Monocyte differentiatio 99.7 9.6E-19 3.3E-23 186.7 2.8 202 550-803 43-268 (312)
69 1wwl_A Monocyte differentiatio 99.7 2.1E-19 7.2E-24 191.8 -2.7 125 526-654 42-185 (312)
70 1h6u_A Internalin H; cell adhe 99.7 2E-17 6.7E-22 175.8 12.2 197 547-806 38-235 (308)
71 3qfl_A MLA10; coiled-coil, (CC 99.7 2.4E-18 8.2E-23 150.1 3.6 80 9-88 2-83 (115)
72 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-18 1.1E-22 183.1 5.2 237 568-886 30-270 (317)
73 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.2E-22 174.2 8.6 217 536-802 16-238 (276)
74 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.8E-22 189.5 7.5 242 563-886 21-270 (487)
75 1p9a_G Platelet glycoprotein I 99.7 2E-16 7E-21 166.2 13.2 182 567-803 5-187 (290)
76 1p9a_G Platelet glycoprotein I 99.7 1.5E-16 5.3E-21 167.1 11.4 200 547-802 7-209 (290)
77 2o6q_A Variable lymphocyte rec 99.7 2.4E-16 8.3E-21 164.2 12.7 179 572-802 37-219 (270)
78 4ay9_X Follicle-stimulating ho 99.7 2.4E-16 8.2E-21 171.0 11.8 234 553-864 12-255 (350)
79 3ogk_B Coronatine-insensitive 99.7 4.1E-18 1.4E-22 199.8 -2.4 90 762-869 433-526 (592)
80 1w5s_A Origin recognition comp 99.7 1.4E-15 4.7E-20 169.5 18.0 303 167-484 20-372 (412)
81 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.5E-21 162.4 9.2 205 561-833 23-236 (239)
82 2z62_A TOLL-like receptor 4, v 99.6 1.4E-16 4.9E-21 166.7 8.8 209 560-832 18-233 (276)
83 1h6u_A Internalin H; cell adhe 99.6 3E-16 1E-20 166.7 11.4 191 526-779 40-231 (308)
84 2xwt_C Thyrotropin receptor; s 99.6 7.2E-16 2.5E-20 157.5 13.5 131 737-891 101-239 (239)
85 1z7x_W Ribonuclease inhibitor; 99.6 2.5E-19 8.5E-24 203.2 -13.9 337 526-889 2-381 (461)
86 2o6q_A Variable lymphocyte rec 99.6 8.9E-16 3E-20 159.9 12.5 195 573-833 17-215 (270)
87 3rfs_A Internalin B, repeat mo 99.6 5.7E-16 1.9E-20 161.5 9.9 64 737-800 153-217 (272)
88 2qen_A Walker-type ATPase; unk 99.6 1.8E-14 6.1E-19 156.6 21.3 294 167-505 10-349 (350)
89 3rfs_A Internalin B, repeat mo 99.6 8.4E-16 2.9E-20 160.2 8.9 196 546-800 37-234 (272)
90 4glp_A Monocyte differentiatio 99.6 5.1E-16 1.8E-20 165.4 6.9 200 550-801 91-307 (310)
91 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.8E-21 173.0 0.8 123 528-652 48-178 (336)
92 2ca6_A RAN GTPase-activating p 99.6 1.2E-17 4.2E-22 184.2 -6.9 247 541-803 23-318 (386)
93 2ast_B S-phase kinase-associat 99.6 3E-16 1E-20 169.6 2.8 80 572-651 70-151 (336)
94 1h6t_A Internalin B; cell adhe 99.6 3.1E-15 1E-19 157.4 9.5 175 568-804 42-216 (291)
95 3ogk_B Coronatine-insensitive 99.6 8.9E-16 3.1E-20 179.8 5.7 322 525-889 162-524 (592)
96 2p1m_B Transport inhibitor res 99.6 1.5E-16 5E-21 186.7 -2.2 100 526-625 129-241 (594)
97 2fna_A Conserved hypothetical 99.6 2.1E-13 7.2E-18 148.5 23.0 291 167-504 11-356 (357)
98 1m9s_A Internalin B; cell inva 99.6 4.6E-15 1.6E-19 171.1 10.0 175 568-804 39-213 (605)
99 3m19_A Variable lymphocyte rec 99.5 1.9E-14 6.4E-19 148.1 10.9 177 573-802 15-193 (251)
100 4glp_A Monocyte differentiatio 99.5 5.1E-15 1.7E-19 157.6 5.6 187 570-803 89-287 (310)
101 2ca6_A RAN GTPase-activating p 99.5 8E-16 2.7E-20 169.6 -1.3 257 525-797 30-339 (386)
102 4ay9_X Follicle-stimulating ho 99.5 6E-14 2.1E-18 152.0 12.6 235 575-887 12-255 (350)
103 1h6t_A Internalin B; cell adhe 99.5 3.1E-14 1E-18 149.7 9.2 170 547-778 43-213 (291)
104 3goz_A Leucine-rich repeat-con 99.5 1.7E-15 5.8E-20 165.1 -0.4 231 532-805 3-270 (362)
105 3cvr_A Invasion plasmid antige 99.5 3.1E-14 1.1E-18 162.2 9.5 182 528-782 60-247 (571)
106 3cvr_A Invasion plasmid antige 99.5 3.3E-14 1.1E-18 162.0 8.9 179 550-803 59-245 (571)
107 1xeu_A Internalin C; cellular 99.5 2.1E-14 7.3E-19 148.4 6.6 173 570-805 17-189 (263)
108 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.4E-19 167.4 4.9 101 547-652 40-141 (605)
109 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.5E-20 178.5 -4.1 129 525-653 154-300 (594)
110 3m19_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 141.4 10.9 119 529-650 16-139 (251)
111 4ezg_A Putative uncharacterize 99.5 1E-13 3.6E-18 136.6 9.1 152 569-801 41-194 (197)
112 3goz_A Leucine-rich repeat-con 99.4 8.4E-15 2.9E-19 159.6 -0.6 234 526-802 21-298 (362)
113 2qby_B CDC6 homolog 3, cell di 99.4 1.9E-11 6.6E-16 134.4 25.6 295 168-485 19-341 (384)
114 4ezg_A Putative uncharacterize 99.4 4.2E-13 1.4E-17 132.2 10.8 129 525-655 42-172 (197)
115 1fnn_A CDC6P, cell division co 99.4 1.1E-11 3.7E-16 136.7 23.1 299 168-485 16-353 (389)
116 1dce_A Protein (RAB geranylger 99.4 5.6E-16 1.9E-20 177.8 -12.8 38 569-606 346-383 (567)
117 2v1u_A Cell division control p 99.4 2.2E-11 7.5E-16 134.1 23.8 295 168-484 18-352 (387)
118 2o6s_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 133.0 7.5 176 530-766 10-190 (208)
119 1xeu_A Internalin C; cellular 99.4 2.5E-13 8.7E-18 140.3 4.8 65 568-635 37-101 (263)
120 1dce_A Protein (RAB geranylger 99.3 1.1E-14 3.6E-19 167.1 -6.9 191 547-804 346-549 (567)
121 4b8c_D Glucose-repressible alc 99.3 1.5E-13 5.2E-18 162.7 2.2 155 526-718 172-332 (727)
122 2qby_A CDC6 homolog 1, cell di 99.3 2.6E-11 8.9E-16 133.5 19.6 296 167-483 18-348 (386)
123 2ell_A Acidic leucine-rich nuc 99.3 2.1E-12 7.1E-17 123.6 8.6 129 526-656 23-161 (168)
124 3e6j_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 127.5 11.6 150 574-801 21-172 (229)
125 1njg_A DNA polymerase III subu 99.3 2.9E-11 9.8E-16 123.9 15.9 197 169-382 23-231 (250)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 5.7E-12 2E-16 126.2 10.0 151 574-802 13-167 (220)
127 2v9t_B SLIT homolog 2 protein 99.3 5.3E-12 1.8E-16 126.5 9.5 131 526-656 31-166 (220)
128 2v9t_B SLIT homolog 2 protein 99.3 6E-12 2.1E-16 126.1 9.9 65 738-802 101-166 (220)
129 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.5E-17 120.0 6.7 123 526-650 16-148 (149)
130 2xot_A Amphoterin-induced prot 99.3 1.2E-12 4.2E-17 142.2 4.8 172 553-776 21-200 (361)
131 3e6j_A Variable lymphocyte rec 99.3 8.6E-12 3E-16 125.9 10.3 129 526-655 39-172 (229)
132 1a9n_A U2A', U2A'; complex (nu 99.3 8.9E-12 3E-16 120.1 8.5 127 525-654 17-152 (176)
133 2v70_A SLIT-2, SLIT homolog 2 99.2 1.2E-11 4.1E-16 123.9 9.6 131 526-656 31-167 (220)
134 2o6s_A Variable lymphocyte rec 99.2 2.1E-11 7.2E-16 121.2 10.7 130 526-656 27-162 (208)
135 2wfh_A SLIT homolog 2 protein 99.2 3.1E-11 1E-15 118.0 9.0 125 530-656 13-140 (193)
136 4b8c_D Glucose-repressible alc 99.2 1.8E-11 6E-16 145.1 7.8 106 526-632 223-329 (727)
137 2chg_A Replication factor C sm 99.2 2.1E-10 7.2E-15 115.4 14.0 184 169-379 17-204 (226)
138 1w8a_A SLIT protein; signaling 99.2 3.4E-11 1.2E-15 117.8 7.6 125 530-656 11-140 (192)
139 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.9E-15 126.6 9.1 130 526-655 38-176 (361)
140 2je0_A Acidic leucine-rich nuc 99.0 9.1E-11 3.1E-15 109.6 4.9 108 548-656 15-127 (149)
141 2ell_A Acidic leucine-rich nuc 99.0 7.3E-10 2.5E-14 105.7 10.4 113 523-637 45-165 (168)
142 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.6E-16 121.4 -1.8 90 562-654 38-127 (198)
143 2o6r_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 106.8 9.5 125 529-656 9-138 (177)
144 1sxj_B Activator 1 37 kDa subu 99.0 1.8E-09 6.1E-14 115.4 13.6 185 169-380 21-211 (323)
145 3sb4_A Hypothetical leucine ri 99.0 5.7E-10 2E-14 119.5 9.1 97 764-882 225-324 (329)
146 1hqc_A RUVB; extended AAA-ATPa 99.0 1.3E-09 4.4E-14 116.6 10.6 267 169-482 12-324 (324)
147 3sb4_A Hypothetical leucine ri 99.0 2.3E-10 7.9E-15 122.6 4.7 101 740-862 225-328 (329)
148 1a9n_A U2A', U2A'; complex (nu 99.0 6.8E-10 2.3E-14 106.8 6.9 108 545-655 14-126 (176)
149 2r9u_A Variable lymphocyte rec 98.9 1.1E-09 3.9E-14 104.8 8.2 105 530-637 15-123 (174)
150 1ds9_A Outer arm dynein; leuci 98.9 4E-11 1.4E-15 118.0 -3.1 125 528-655 24-153 (198)
151 1w8a_A SLIT protein; signaling 98.9 2.3E-09 7.9E-14 104.6 9.4 107 526-632 28-139 (192)
152 2wfh_A SLIT homolog 2 protein 98.9 5.3E-09 1.8E-13 102.0 10.4 106 526-632 30-139 (193)
153 2r9u_A Variable lymphocyte rec 98.8 4.1E-09 1.4E-13 100.8 7.5 101 553-656 15-119 (174)
154 1iqp_A RFCS; clamp loader, ext 98.8 1E-08 3.6E-13 109.6 11.3 183 169-381 25-214 (327)
155 3g39_A Variable lymphocyte rec 98.8 6.3E-09 2.2E-13 99.2 8.1 99 530-631 12-114 (170)
156 3g39_A Variable lymphocyte rec 98.8 5.9E-09 2E-13 99.4 7.4 103 551-656 10-116 (170)
157 3te6_A Regulatory protein SIR3 98.8 6.3E-08 2.1E-12 100.6 15.5 171 170-346 21-212 (318)
158 2o6r_A Variable lymphocyte rec 98.8 2.2E-08 7.6E-13 96.3 9.9 126 704-866 9-135 (177)
159 1jr3_A DNA polymerase III subu 98.7 6E-08 2.1E-12 105.8 13.7 195 169-379 16-221 (373)
160 4fdw_A Leucine rich hypothetic 98.7 1.2E-07 4.1E-12 103.6 13.7 222 551-804 136-361 (401)
161 2chq_A Replication factor C sm 98.7 1.8E-07 6.2E-12 99.5 14.7 181 169-379 17-204 (319)
162 4fdw_A Leucine rich hypothetic 98.6 9.1E-07 3.1E-11 96.6 18.3 98 548-650 111-211 (401)
163 1jbk_A CLPB protein; beta barr 98.5 2.2E-07 7.5E-12 90.6 9.7 149 169-341 22-194 (195)
164 2ifg_A High affinity nerve gro 98.5 9.5E-08 3.2E-12 103.0 7.3 101 531-633 12-117 (347)
165 3bos_A Putative DNA replicatio 98.5 2.1E-07 7.3E-12 94.4 8.6 174 169-379 28-217 (242)
166 4fs7_A Uncharacterized protein 98.4 5.5E-06 1.9E-10 90.7 18.8 119 737-882 272-391 (394)
167 1sxj_D Activator 1 41 kDa subu 98.4 1.2E-06 4.1E-11 94.6 12.5 194 169-378 37-234 (353)
168 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.6E-11 97.7 9.0 102 554-656 12-117 (347)
169 3un9_A NLR family member X1; l 98.4 2.7E-08 9.1E-13 107.7 -1.7 165 571-778 71-252 (372)
170 3pvs_A Replication-associated 98.4 6.1E-06 2.1E-10 90.9 16.9 178 169-378 26-214 (447)
171 3pfi_A Holliday junction ATP-d 98.4 5.1E-06 1.7E-10 88.9 16.0 177 169-378 29-226 (338)
172 3uk6_A RUVB-like 2; hexameric 98.3 6.7E-06 2.3E-10 89.2 16.7 198 169-378 44-302 (368)
173 1a5t_A Delta prime, HOLB; zinc 98.3 7.3E-06 2.5E-10 87.2 14.9 171 175-379 8-205 (334)
174 2z4s_A Chromosomal replication 98.3 3.6E-06 1.2E-10 92.9 12.6 181 196-397 130-331 (440)
175 3un9_A NLR family member X1; l 98.3 6E-08 2E-12 104.9 -1.8 106 526-631 71-195 (372)
176 1sxj_E Activator 1 40 kDa subu 98.3 2.8E-06 9.6E-11 91.7 11.0 197 169-380 14-238 (354)
177 4fs7_A Uncharacterized protein 98.2 2.5E-05 8.6E-10 85.4 18.1 125 736-886 248-374 (394)
178 3h4m_A Proteasome-activating n 98.2 7.6E-06 2.6E-10 85.2 12.7 184 168-377 16-229 (285)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.5E-05 5.3E-10 81.7 14.6 187 169-378 6-221 (262)
180 1sxj_A Activator 1 95 kDa subu 98.2 6E-06 2.1E-10 93.4 12.3 198 169-380 39-254 (516)
181 3u61_B DNA polymerase accessor 98.2 4.8E-06 1.7E-10 88.5 10.8 178 169-376 26-213 (324)
182 2ra8_A Uncharacterized protein 98.1 1.5E-06 5.3E-11 93.0 5.4 67 700-778 250-320 (362)
183 3syl_A Protein CBBX; photosynt 98.1 1.3E-05 4.5E-10 84.5 11.6 161 170-346 32-218 (309)
184 1l8q_A Chromosomal replication 98.1 2.6E-05 9E-10 82.7 13.5 155 196-374 37-203 (324)
185 1sxj_C Activator 1 40 kDa subu 98.0 2E-05 6.9E-10 84.2 12.2 175 169-376 25-209 (340)
186 2ra8_A Uncharacterized protein 98.0 1.5E-06 5E-11 93.1 3.1 63 700-776 277-341 (362)
187 2p65_A Hypothetical protein PF 98.0 4.1E-06 1.4E-10 80.9 5.5 45 169-219 22-66 (187)
188 1d2n_A N-ethylmaleimide-sensit 98.0 6.4E-05 2.2E-09 77.4 13.7 171 169-370 33-228 (272)
189 3n70_A Transport activator; si 98.0 6.2E-06 2.1E-10 75.8 5.1 114 170-314 2-115 (145)
190 3eie_A Vacuolar protein sortin 97.9 0.00016 5.6E-09 76.3 16.6 187 169-380 18-229 (322)
191 2w58_A DNAI, primosome compone 97.9 9.3E-06 3.2E-10 79.6 6.5 118 177-314 37-158 (202)
192 2qp9_X Vacuolar protein sortin 97.9 0.00012 4.2E-09 78.2 15.1 187 169-380 51-262 (355)
193 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00044 1.5E-08 72.8 18.5 188 169-380 12-224 (322)
194 3d8b_A Fidgetin-like protein 1 97.8 0.00011 3.8E-09 78.8 13.4 187 169-380 84-296 (357)
195 1qvr_A CLPB protein; coiled co 97.8 2.9E-05 9.9E-10 93.6 9.7 152 169-344 170-344 (854)
196 3ec2_A DNA replication protein 97.8 2.2E-05 7.7E-10 75.2 6.5 121 174-314 19-142 (180)
197 3b9p_A CG5977-PA, isoform A; A 97.8 0.00046 1.6E-08 72.0 16.9 183 169-378 21-232 (297)
198 2gno_A DNA polymerase III, gam 97.8 6.3E-05 2.2E-09 78.2 9.8 148 173-345 1-152 (305)
199 3pxg_A Negative regulator of g 97.8 6E-05 2.1E-09 83.9 10.2 145 169-345 180-338 (468)
200 3cf0_A Transitional endoplasmi 97.7 0.00039 1.3E-08 72.6 15.0 181 169-374 15-223 (301)
201 4fcw_A Chaperone protein CLPB; 97.7 0.00011 3.7E-09 77.5 10.2 138 170-314 18-169 (311)
202 3e4g_A ATP synthase subunit S, 97.7 3.4E-06 1.2E-10 78.9 -1.5 101 757-871 53-155 (176)
203 2zan_A Vacuolar protein sortin 97.7 0.00063 2.2E-08 75.1 16.4 188 169-379 134-345 (444)
204 3vfd_A Spastin; ATPase, microt 97.7 0.0006 2E-08 74.1 16.0 186 169-379 115-326 (389)
205 3co5_A Putative two-component 97.7 1.7E-05 5.7E-10 72.7 2.9 109 170-313 5-114 (143)
206 1io0_A Tropomodulin; LRR prote 97.6 1.3E-05 4.6E-10 77.0 1.9 88 566-653 59-162 (185)
207 1in4_A RUVB, holliday junction 97.6 0.00033 1.1E-08 74.3 12.5 178 169-379 25-223 (334)
208 2c9o_A RUVB-like 1; hexameric 97.6 0.0002 6.9E-09 79.5 11.0 98 278-380 298-411 (456)
209 3e4g_A ATP synthase subunit S, 97.6 8.7E-06 3E-10 76.1 -0.1 88 740-838 60-154 (176)
210 2bjv_A PSP operon transcriptio 97.5 0.00013 4.5E-09 74.7 8.0 46 170-219 7-52 (265)
211 4gt6_A Cell surface protein; l 97.5 0.00031 1E-08 76.7 11.0 116 528-648 65-188 (394)
212 3hu3_A Transitional endoplasmi 97.5 0.00049 1.7E-08 76.5 12.6 185 169-378 204-414 (489)
213 2kjq_A DNAA-related protein; s 97.5 4.3E-05 1.5E-09 70.2 3.2 38 197-236 37-74 (149)
214 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00048 1.6E-08 82.1 13.0 153 169-345 186-362 (758)
215 1lv7_A FTSH; alpha/beta domain 97.5 0.0014 4.7E-08 66.7 14.4 183 169-376 12-222 (257)
216 4b4t_J 26S protease regulatory 97.4 0.0024 8E-08 68.0 16.1 178 169-372 148-354 (405)
217 1ofh_A ATP-dependent HSL prote 97.4 0.00052 1.8E-08 72.1 11.1 155 169-343 15-213 (310)
218 4gt6_A Cell surface protein; l 97.4 0.0014 4.7E-08 71.5 14.8 103 545-650 58-168 (394)
219 1ojl_A Transcriptional regulat 97.4 0.00025 8.7E-09 73.9 8.3 46 169-218 2-47 (304)
220 1io0_A Tropomodulin; LRR prote 97.4 5.9E-05 2E-09 72.5 3.2 107 526-632 35-164 (185)
221 3rw6_A Nuclear RNA export fact 97.4 0.00019 6.6E-09 72.5 6.6 60 564-624 188-256 (267)
222 3pxi_A Negative regulator of g 97.4 0.00039 1.3E-08 82.8 10.2 146 169-345 180-338 (758)
223 4b4t_K 26S protease regulatory 97.3 0.0013 4.6E-08 71.0 13.0 178 168-371 171-378 (428)
224 4b4t_L 26S protease subunit RP 97.3 0.0023 7.9E-08 69.2 14.5 179 168-372 180-387 (437)
225 3pxi_A Negative regulator of g 97.3 0.0002 6.7E-09 85.3 6.1 156 169-345 491-675 (758)
226 4b4t_H 26S protease regulatory 97.2 0.0053 1.8E-07 66.2 15.3 177 169-371 209-414 (467)
227 2r62_A Cell division protease 97.2 0.00023 7.7E-09 73.1 4.6 157 169-345 11-196 (268)
228 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.2E-09 72.7 3.6 79 569-649 167-258 (267)
229 2r44_A Uncharacterized protein 97.2 0.0021 7.3E-08 68.1 12.1 152 170-347 28-200 (331)
230 2ce7_A Cell division protein F 97.1 0.0042 1.4E-07 68.3 14.2 179 169-372 16-221 (476)
231 2qgz_A Helicase loader, putati 97.0 0.00038 1.3E-08 72.7 4.4 119 175-314 134-257 (308)
232 4h09_A Hypothetical leucine ri 97.0 0.011 3.7E-07 63.9 16.2 77 526-605 45-123 (379)
233 4b4t_M 26S protease regulatory 97.0 0.0018 6E-08 70.1 9.6 177 169-371 181-386 (434)
234 3m6a_A ATP-dependent protease 97.0 0.0012 4.2E-08 74.7 8.6 165 169-345 81-266 (543)
235 4b4t_I 26S protease regulatory 96.9 0.0067 2.3E-07 64.8 12.7 177 169-371 182-387 (437)
236 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0012 4.3E-08 78.5 7.8 134 169-314 458-607 (758)
237 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00061 2.1E-08 69.9 3.8 68 196-285 123-192 (331)
238 1qvr_A CLPB protein; coiled co 96.8 0.0024 8.1E-08 77.0 9.3 135 170-314 559-710 (854)
239 1jr3_D DNA polymerase III, del 96.7 0.017 5.8E-07 61.3 14.7 157 196-378 18-184 (343)
240 2cvh_A DNA repair and recombin 96.6 0.0068 2.3E-07 59.7 9.9 84 196-285 20-115 (220)
241 3cf2_A TER ATPase, transitiona 96.6 0.0092 3.2E-07 69.7 11.8 179 169-372 204-407 (806)
242 3t15_A Ribulose bisphosphate c 96.5 0.0055 1.9E-07 63.4 8.8 24 195-218 35-58 (293)
243 4h09_A Hypothetical leucine ri 96.4 0.031 1.1E-06 60.2 14.6 274 545-863 41-341 (379)
244 1um8_A ATP-dependent CLP prote 96.4 0.01 3.5E-07 64.0 10.3 49 170-218 22-94 (376)
245 2b8t_A Thymidine kinase; deoxy 96.4 0.0017 6E-08 63.5 3.4 113 196-316 12-127 (223)
246 2x8a_A Nuclear valosin-contain 96.2 0.033 1.1E-06 56.7 12.3 155 169-345 10-191 (274)
247 3hr8_A Protein RECA; alpha and 96.2 0.011 3.8E-07 62.3 8.7 84 195-285 60-149 (356)
248 2dhr_A FTSH; AAA+ protein, hex 96.1 0.048 1.7E-06 60.3 13.7 176 168-372 30-236 (499)
249 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.011 3.7E-07 58.8 6.9 115 196-315 23-168 (235)
250 1ye8_A Protein THEP1, hypothet 95.9 0.021 7E-07 53.9 8.4 22 198-219 2-23 (178)
251 1ypw_A Transitional endoplasmi 95.8 0.016 5.3E-07 68.9 8.9 156 169-345 204-385 (806)
252 1v5w_A DMC1, meiotic recombina 95.8 0.031 1E-06 59.1 10.2 89 195-284 121-228 (343)
253 3io5_A Recombination and repai 95.8 0.024 8.3E-07 57.8 8.5 81 198-285 30-121 (333)
254 1xp8_A RECA protein, recombina 95.7 0.027 9.4E-07 59.7 9.3 83 196-285 74-162 (366)
255 1g5t_A COB(I)alamin adenosyltr 95.7 0.0092 3.1E-07 56.5 4.9 117 197-315 29-163 (196)
256 1n0w_A DNA repair protein RAD5 95.7 0.016 5.4E-07 58.0 7.1 89 196-285 24-129 (243)
257 1rz3_A Hypothetical protein rb 95.6 0.011 3.9E-07 57.2 5.4 42 174-218 3-44 (201)
258 2cbz_A Multidrug resistance-as 95.6 0.041 1.4E-06 54.6 9.5 24 196-219 31-54 (237)
259 2i1q_A DNA repair and recombin 95.6 0.018 6.1E-07 60.5 7.2 89 195-284 97-213 (322)
260 2z43_A DNA repair and recombin 95.6 0.024 8.1E-07 59.5 8.1 88 196-284 107-212 (324)
261 2pze_A Cystic fibrosis transme 95.4 0.081 2.8E-06 52.2 11.0 24 196-219 34-57 (229)
262 2zr9_A Protein RECA, recombina 95.3 0.038 1.3E-06 58.4 8.6 82 196-284 61-148 (349)
263 1u94_A RECA protein, recombina 95.1 0.043 1.5E-06 58.0 8.1 82 196-284 63-150 (356)
264 1cr0_A DNA primase/helicase; R 95.0 0.037 1.3E-06 57.3 7.2 37 196-234 35-72 (296)
265 2px0_A Flagellar biosynthesis 94.9 0.044 1.5E-06 56.4 7.5 85 196-284 105-191 (296)
266 3c8u_A Fructokinase; YP_612366 94.8 0.019 6.5E-07 55.9 4.3 38 177-218 7-44 (208)
267 3ice_A Transcription terminati 94.7 0.039 1.3E-06 57.8 6.3 95 180-284 163-270 (422)
268 1odf_A YGR205W, hypothetical 3 94.7 0.094 3.2E-06 53.7 9.2 81 194-274 29-117 (290)
269 3tqc_A Pantothenate kinase; bi 94.6 0.071 2.4E-06 55.2 8.1 46 171-218 69-114 (321)
270 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.021 7.3E-07 63.2 4.3 42 170-219 23-64 (500)
271 4akg_A Glutathione S-transfera 94.5 0.38 1.3E-05 63.8 16.2 139 197-345 1268-1431(2695)
272 3bh0_A DNAB-like replicative h 94.5 0.075 2.6E-06 55.4 8.0 51 196-250 68-118 (315)
273 1zp6_A Hypothetical protein AT 94.4 0.02 6.8E-07 54.8 3.3 24 196-219 9-32 (191)
274 3lw7_A Adenylate kinase relate 94.4 0.018 6.1E-07 54.2 2.8 20 197-216 2-21 (179)
275 4a1f_A DNAB helicase, replicat 94.4 0.12 4E-06 54.0 9.2 52 196-251 46-97 (338)
276 1pzn_A RAD51, DNA repair and r 94.3 0.075 2.6E-06 56.2 7.8 90 195-285 130-241 (349)
277 3lda_A DNA repair protein RAD5 94.2 0.098 3.3E-06 56.1 8.5 88 196-284 178-282 (400)
278 2orw_A Thymidine kinase; TMTK, 94.2 0.0066 2.3E-07 57.7 -0.6 22 197-218 4-25 (184)
279 1qhx_A CPT, protein (chloramph 94.1 0.02 6.8E-07 54.1 2.6 22 197-218 4-25 (178)
280 3kb2_A SPBC2 prophage-derived 94.1 0.021 7.3E-07 53.5 2.6 22 197-218 2-23 (173)
281 1ly1_A Polynucleotide kinase; 94.1 0.023 7.7E-07 53.8 2.8 22 197-218 3-24 (181)
282 3uie_A Adenylyl-sulfate kinase 93.9 0.029 9.9E-07 54.2 3.3 23 196-218 25-47 (200)
283 3vaa_A Shikimate kinase, SK; s 93.9 0.023 7.9E-07 54.8 2.6 23 196-218 25-47 (199)
284 4gp7_A Metallophosphoesterase; 93.8 0.028 9.5E-07 52.7 2.9 23 196-218 9-31 (171)
285 1vma_A Cell division protein F 93.8 0.13 4.3E-06 53.1 8.0 88 195-285 103-196 (306)
286 1kgd_A CASK, peripheral plasma 93.8 0.026 8.8E-07 53.5 2.6 23 196-218 5-27 (180)
287 1gvn_B Zeta; postsegregational 93.7 0.056 1.9E-06 55.4 5.2 40 178-218 16-55 (287)
288 1kag_A SKI, shikimate kinase I 93.7 0.025 8.6E-07 53.1 2.3 22 197-218 5-26 (173)
289 2rhm_A Putative kinase; P-loop 93.7 0.033 1.1E-06 53.3 3.2 23 196-218 5-27 (193)
290 3jvv_A Twitching mobility prot 93.6 0.027 9.1E-07 59.6 2.6 110 197-318 124-234 (356)
291 3hws_A ATP-dependent CLP prote 93.6 0.039 1.3E-06 59.0 4.0 49 170-218 16-73 (363)
292 1knq_A Gluconate kinase; ALFA/ 93.6 0.037 1.2E-06 52.1 3.3 24 195-218 7-30 (175)
293 1sky_E F1-ATPase, F1-ATP synth 93.6 0.099 3.4E-06 56.7 6.9 87 197-284 152-254 (473)
294 3dm5_A SRP54, signal recogniti 93.6 0.41 1.4E-05 51.7 11.7 24 195-218 99-122 (443)
295 2dr3_A UPF0273 protein PH0284; 93.6 0.22 7.6E-06 49.6 9.3 47 196-246 23-69 (247)
296 3trf_A Shikimate kinase, SK; a 93.5 0.026 9E-07 53.6 2.2 23 196-218 5-27 (185)
297 2p5t_B PEZT; postsegregational 93.5 0.055 1.9E-06 54.4 4.7 41 177-218 14-54 (253)
298 1fx0_B ATP synthase beta chain 93.5 0.19 6.4E-06 54.6 8.9 99 180-284 154-275 (498)
299 1nks_A Adenylate kinase; therm 93.5 0.034 1.2E-06 53.2 2.9 22 197-218 2-23 (194)
300 3fwy_A Light-independent proto 93.4 0.037 1.3E-06 57.4 3.2 39 195-235 47-85 (314)
301 3asz_A Uridine kinase; cytidin 93.4 0.042 1.4E-06 53.5 3.4 24 195-218 5-28 (211)
302 2qt1_A Nicotinamide riboside k 93.4 0.045 1.5E-06 53.1 3.6 24 195-218 20-43 (207)
303 1ex7_A Guanylate kinase; subst 93.4 0.025 8.4E-07 53.6 1.6 22 197-218 2-23 (186)
304 4eun_A Thermoresistant glucoki 93.4 0.033 1.1E-06 53.7 2.6 23 196-218 29-51 (200)
305 2ga8_A Hypothetical 39.9 kDa p 93.3 0.052 1.8E-06 56.6 4.1 45 172-218 2-46 (359)
306 3tr0_A Guanylate kinase, GMP k 93.3 0.035 1.2E-06 53.7 2.7 23 196-218 7-29 (205)
307 2bdt_A BH3686; alpha-beta prot 93.3 0.041 1.4E-06 52.5 3.1 22 197-218 3-24 (189)
308 1zuh_A Shikimate kinase; alpha 93.3 0.031 1.1E-06 52.2 2.1 24 195-218 6-29 (168)
309 3tau_A Guanylate kinase, GMP k 93.1 0.039 1.3E-06 53.6 2.7 24 196-219 8-31 (208)
310 1ixz_A ATP-dependent metallopr 93.1 0.065 2.2E-06 53.9 4.4 177 169-372 16-221 (254)
311 1uf9_A TT1252 protein; P-loop, 93.1 0.045 1.6E-06 52.8 3.1 24 195-218 7-30 (203)
312 3t61_A Gluconokinase; PSI-biol 93.1 0.035 1.2E-06 53.7 2.3 23 196-218 18-40 (202)
313 1kht_A Adenylate kinase; phosp 93.0 0.039 1.3E-06 52.7 2.5 22 197-218 4-25 (192)
314 2ffh_A Protein (FFH); SRP54, s 93.0 0.29 9.9E-06 52.7 9.5 23 196-218 98-120 (425)
315 1tev_A UMP-CMP kinase; ploop, 93.0 0.042 1.5E-06 52.6 2.8 23 196-218 3-25 (196)
316 3iij_A Coilin-interacting nucl 93.0 0.036 1.2E-06 52.4 2.2 23 196-218 11-33 (180)
317 2ze6_A Isopentenyl transferase 93.0 0.047 1.6E-06 54.9 3.1 22 197-218 2-23 (253)
318 2qor_A Guanylate kinase; phosp 93.0 0.032 1.1E-06 54.1 1.8 24 195-218 11-34 (204)
319 3a00_A Guanylate kinase, GMP k 92.9 0.034 1.2E-06 52.9 1.9 22 197-218 2-23 (186)
320 2j41_A Guanylate kinase; GMP, 92.9 0.043 1.5E-06 53.2 2.7 24 196-219 6-29 (207)
321 2if2_A Dephospho-COA kinase; a 92.9 0.049 1.7E-06 52.7 3.1 21 198-218 3-23 (204)
322 1jjv_A Dephospho-COA kinase; P 92.9 0.051 1.7E-06 52.7 3.2 22 197-218 3-24 (206)
323 1ukz_A Uridylate kinase; trans 92.9 0.048 1.6E-06 52.7 3.0 24 195-218 14-37 (203)
324 3rfe_A Platelet glycoprotein I 92.9 0.12 4.3E-06 45.5 5.4 42 563-606 24-66 (130)
325 2plr_A DTMP kinase, probable t 92.9 0.098 3.4E-06 50.8 5.3 23 196-218 4-26 (213)
326 2yvu_A Probable adenylyl-sulfa 92.9 0.057 1.9E-06 51.4 3.4 24 195-218 12-35 (186)
327 1y63_A LMAJ004144AAA protein; 92.8 0.041 1.4E-06 52.3 2.3 23 196-218 10-32 (184)
328 2jaq_A Deoxyguanosine kinase; 92.8 0.043 1.5E-06 53.1 2.5 21 198-218 2-22 (205)
329 2c95_A Adenylate kinase 1; tra 92.8 0.043 1.5E-06 52.7 2.5 23 196-218 9-31 (196)
330 3cm0_A Adenylate kinase; ATP-b 92.8 0.058 2E-06 51.2 3.4 23 196-218 4-26 (186)
331 1via_A Shikimate kinase; struc 92.8 0.038 1.3E-06 52.0 1.9 21 198-218 6-26 (175)
332 3umf_A Adenylate kinase; rossm 92.8 0.052 1.8E-06 52.8 2.9 25 194-218 27-51 (217)
333 1htw_A HI0065; nucleotide-bind 92.7 0.063 2.1E-06 49.3 3.3 23 196-218 33-55 (158)
334 1xjc_A MOBB protein homolog; s 92.7 0.048 1.6E-06 50.5 2.5 24 195-218 3-26 (169)
335 1g8p_A Magnesium-chelatase 38 92.6 0.042 1.4E-06 58.5 2.3 44 169-218 24-67 (350)
336 1cke_A CK, MSSA, protein (cyti 92.6 0.053 1.8E-06 53.5 2.9 22 197-218 6-27 (227)
337 3aez_A Pantothenate kinase; tr 92.6 0.059 2E-06 55.9 3.3 24 195-218 89-112 (312)
338 1lvg_A Guanylate kinase, GMP k 92.6 0.042 1.4E-06 52.9 2.0 22 197-218 5-26 (198)
339 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.06 2E-06 54.4 3.2 23 196-218 4-26 (260)
340 2grj_A Dephospho-COA kinase; T 92.5 0.063 2.1E-06 51.2 3.2 24 195-218 11-34 (192)
341 1uj2_A Uridine-cytidine kinase 92.5 0.055 1.9E-06 54.4 2.9 24 195-218 21-44 (252)
342 3e70_C DPA, signal recognition 92.5 0.33 1.1E-05 50.5 8.8 24 195-218 128-151 (328)
343 1qf9_A UMP/CMP kinase, protein 92.5 0.06 2E-06 51.4 3.0 23 196-218 6-28 (194)
344 2bbw_A Adenylate kinase 4, AK4 92.4 0.058 2E-06 54.0 2.9 23 196-218 27-49 (246)
345 2bwj_A Adenylate kinase 5; pho 92.4 0.056 1.9E-06 52.0 2.7 23 196-218 12-34 (199)
346 2iyv_A Shikimate kinase, SK; t 92.4 0.042 1.4E-06 52.2 1.7 21 198-218 4-24 (184)
347 2ck3_D ATP synthase subunit be 92.3 0.35 1.2E-05 52.3 8.9 99 180-284 142-262 (482)
348 4a74_A DNA repair and recombin 92.3 0.17 5.9E-06 49.8 6.3 45 195-239 24-72 (231)
349 1iy2_A ATP-dependent metallopr 92.3 0.071 2.4E-06 54.5 3.5 178 168-372 39-245 (278)
350 3ney_A 55 kDa erythrocyte memb 92.3 0.06 2E-06 51.3 2.6 24 195-218 18-41 (197)
351 3upu_A ATP-dependent DNA helic 92.3 0.19 6.6E-06 55.5 7.2 22 198-219 47-68 (459)
352 1znw_A Guanylate kinase, GMP k 92.3 0.063 2.2E-06 52.1 2.9 23 196-218 20-42 (207)
353 2jeo_A Uridine-cytidine kinase 92.2 0.07 2.4E-06 53.4 3.2 23 196-218 25-47 (245)
354 1j8m_F SRP54, signal recogniti 92.2 0.35 1.2E-05 49.6 8.5 87 196-284 98-189 (297)
355 1nn5_A Similar to deoxythymidy 92.2 0.085 2.9E-06 51.4 3.7 23 196-218 9-31 (215)
356 2pt5_A Shikimate kinase, SK; a 92.2 0.059 2E-06 50.2 2.4 21 198-218 2-22 (168)
357 2cdn_A Adenylate kinase; phosp 92.1 0.06 2.1E-06 51.9 2.6 23 196-218 20-42 (201)
358 2z0h_A DTMP kinase, thymidylat 92.1 0.15 5.2E-06 48.7 5.5 21 198-218 2-22 (197)
359 2hf9_A Probable hydrogenase ni 92.1 0.12 4.1E-06 50.8 4.8 25 195-219 37-61 (226)
360 2yhs_A FTSY, cell division pro 92.1 0.37 1.3E-05 52.6 8.9 42 195-239 292-333 (503)
361 1e6c_A Shikimate kinase; phosp 92.1 0.051 1.8E-06 50.9 1.9 22 197-218 3-24 (173)
362 2pbr_A DTMP kinase, thymidylat 92.0 0.063 2.2E-06 51.4 2.5 21 198-218 2-22 (195)
363 1pgv_A TMD-1, tropomodulin TMD 92.0 0.084 2.9E-06 50.1 3.3 39 568-606 66-109 (197)
364 4e22_A Cytidylate kinase; P-lo 92.0 0.07 2.4E-06 53.6 2.9 23 196-218 27-49 (252)
365 2pez_A Bifunctional 3'-phospho 91.9 0.083 2.8E-06 49.8 3.2 23 196-218 5-27 (179)
366 1z6g_A Guanylate kinase; struc 91.9 0.056 1.9E-06 52.9 2.1 23 196-218 23-45 (218)
367 2f1r_A Molybdopterin-guanine d 91.9 0.056 1.9E-06 50.4 2.0 22 197-218 3-24 (171)
368 2vli_A Antibiotic resistance p 91.9 0.048 1.7E-06 51.6 1.5 23 196-218 5-27 (183)
369 1q57_A DNA primase/helicase; d 91.9 0.5 1.7E-05 52.8 10.1 53 196-251 242-294 (503)
370 2j37_W Signal recognition part 91.9 0.75 2.6E-05 50.8 11.1 25 194-218 99-123 (504)
371 3tlx_A Adenylate kinase 2; str 91.8 0.1 3.5E-06 52.0 3.9 24 195-218 28-51 (243)
372 1rj9_A FTSY, signal recognitio 91.8 0.068 2.3E-06 55.2 2.6 24 195-218 101-124 (304)
373 1aky_A Adenylate kinase; ATP:A 91.8 0.063 2.1E-06 52.7 2.3 23 196-218 4-26 (220)
374 1gtv_A TMK, thymidylate kinase 91.8 0.054 1.8E-06 52.8 1.8 21 198-218 2-22 (214)
375 1zu4_A FTSY; GTPase, signal re 91.8 0.38 1.3E-05 49.9 8.3 24 195-218 104-127 (320)
376 2wwf_A Thymidilate kinase, put 91.8 0.067 2.3E-06 52.0 2.5 23 196-218 10-32 (212)
377 1s96_A Guanylate kinase, GMP k 91.8 0.071 2.4E-06 52.1 2.6 23 196-218 16-38 (219)
378 1sq5_A Pantothenate kinase; P- 91.7 0.17 5.8E-06 52.5 5.5 24 195-218 79-102 (308)
379 3kl4_A SRP54, signal recogniti 91.7 0.31 1.1E-05 52.6 7.7 24 195-218 96-119 (433)
380 2f6r_A COA synthase, bifunctio 91.7 0.095 3.3E-06 53.5 3.5 24 195-218 74-97 (281)
381 1ls1_A Signal recognition part 91.6 0.37 1.3E-05 49.5 7.9 23 196-218 98-120 (295)
382 2xxa_A Signal recognition part 91.6 0.38 1.3E-05 52.2 8.4 24 195-218 99-122 (433)
383 2zts_A Putative uncharacterize 91.6 0.33 1.1E-05 48.4 7.4 50 196-248 30-79 (251)
384 2i3b_A HCR-ntpase, human cance 91.5 0.071 2.4E-06 50.7 2.2 22 198-219 3-24 (189)
385 2wsm_A Hydrogenase expression/ 91.5 0.12 4E-06 50.6 3.9 41 173-219 13-53 (221)
386 2r6a_A DNAB helicase, replicat 91.5 0.42 1.4E-05 52.6 8.8 50 196-248 203-252 (454)
387 1zd8_A GTP:AMP phosphotransfer 91.5 0.092 3.1E-06 51.8 3.1 23 196-218 7-29 (227)
388 1m7g_A Adenylylsulfate kinase; 91.5 0.09 3.1E-06 51.1 3.0 23 196-218 25-47 (211)
389 3hjn_A DTMP kinase, thymidylat 91.4 0.23 7.9E-06 47.5 5.8 34 198-233 2-35 (197)
390 3b9q_A Chloroplast SRP recepto 91.4 0.1 3.4E-06 53.8 3.3 24 195-218 99-122 (302)
391 3fb4_A Adenylate kinase; psych 91.3 0.084 2.9E-06 51.6 2.5 21 198-218 2-22 (216)
392 2pcj_A ABC transporter, lipopr 91.3 0.098 3.4E-06 51.3 3.0 23 196-218 30-52 (224)
393 2q6t_A DNAB replication FORK h 91.3 0.57 2E-05 51.3 9.5 52 196-250 200-251 (444)
394 3tif_A Uncharacterized ABC tra 91.2 0.095 3.3E-06 51.9 2.9 23 196-218 31-53 (235)
395 1vht_A Dephospho-COA kinase; s 91.1 0.11 3.9E-06 50.7 3.3 23 196-218 4-26 (218)
396 2v54_A DTMP kinase, thymidylat 91.1 0.091 3.1E-06 50.7 2.6 22 197-218 5-26 (204)
397 3dl0_A Adenylate kinase; phosp 91.1 0.091 3.1E-06 51.3 2.5 21 198-218 2-22 (216)
398 1g41_A Heat shock protein HSLU 91.1 0.11 3.6E-06 56.4 3.2 50 169-218 15-72 (444)
399 3b5x_A Lipid A export ATP-bind 91.1 0.5 1.7E-05 53.8 9.1 24 196-219 369-392 (582)
400 2ehv_A Hypothetical protein PH 91.0 0.1 3.4E-06 52.3 2.9 23 196-218 30-52 (251)
401 3gfo_A Cobalt import ATP-bindi 91.0 0.15 5.1E-06 51.7 4.1 23 196-218 34-56 (275)
402 3be4_A Adenylate kinase; malar 91.0 0.094 3.2E-06 51.3 2.6 22 197-218 6-27 (217)
403 3vr4_D V-type sodium ATPase su 91.0 0.2 7E-06 53.7 5.3 86 197-284 152-257 (465)
404 1tue_A Replication protein E1; 91.0 0.13 4.4E-06 48.9 3.3 36 178-218 45-80 (212)
405 2r9v_A ATP synthase subunit al 91.0 0.35 1.2E-05 52.6 7.1 85 196-284 175-276 (515)
406 3cmu_A Protein RECA, recombina 90.9 0.26 9E-06 63.0 7.0 83 195-284 1426-1514(2050)
407 3l0o_A Transcription terminati 90.9 0.13 4.5E-06 53.7 3.6 54 178-237 162-216 (427)
408 2onk_A Molybdate/tungstate ABC 90.8 0.11 3.8E-06 51.5 2.9 22 197-218 25-46 (240)
409 3p32_A Probable GTPase RV1496/ 90.7 0.2 7E-06 53.1 5.1 37 178-218 65-101 (355)
410 3nwj_A ATSK2; P loop, shikimat 90.7 0.096 3.3E-06 52.2 2.3 22 197-218 49-70 (250)
411 1zak_A Adenylate kinase; ATP:A 90.6 0.1 3.5E-06 51.2 2.5 23 196-218 5-27 (222)
412 3b85_A Phosphate starvation-in 90.6 0.093 3.2E-06 50.8 2.1 23 197-219 23-45 (208)
413 3lnc_A Guanylate kinase, GMP k 90.6 0.083 2.8E-06 52.2 1.8 23 196-218 27-50 (231)
414 1b0u_A Histidine permease; ABC 90.5 0.12 4.1E-06 52.1 2.9 23 196-218 32-54 (262)
415 3ake_A Cytidylate kinase; CMP 90.5 0.12 4.2E-06 49.9 2.9 21 198-218 4-24 (208)
416 3r20_A Cytidylate kinase; stru 90.5 0.13 4.3E-06 50.6 2.9 23 196-218 9-31 (233)
417 4eaq_A DTMP kinase, thymidylat 90.4 0.2 7E-06 49.2 4.4 25 195-219 25-49 (229)
418 2qe7_A ATP synthase subunit al 90.4 0.36 1.2E-05 52.5 6.6 85 196-284 162-263 (502)
419 3d3q_A TRNA delta(2)-isopenten 90.4 0.13 4.6E-06 53.3 3.1 22 197-218 8-29 (340)
420 1np6_A Molybdopterin-guanine d 90.4 0.12 4.1E-06 48.3 2.5 23 196-218 6-28 (174)
421 2og2_A Putative signal recogni 90.3 0.14 4.7E-06 54.0 3.2 24 195-218 156-179 (359)
422 2ged_A SR-beta, signal recogni 90.3 0.18 6E-06 48.0 3.8 25 195-219 47-71 (193)
423 1sgw_A Putative ABC transporte 90.3 0.11 3.7E-06 50.5 2.3 23 197-219 36-58 (214)
424 1ji0_A ABC transporter; ATP bi 90.3 0.13 4.4E-06 51.1 2.9 23 196-218 32-54 (240)
425 4g1u_C Hemin import ATP-bindin 90.3 0.13 4.3E-06 52.0 2.8 23 196-218 37-59 (266)
426 1e4v_A Adenylate kinase; trans 90.3 0.12 4.2E-06 50.3 2.7 21 198-218 2-22 (214)
427 1mv5_A LMRA, multidrug resista 90.3 0.14 4.8E-06 51.0 3.1 24 196-219 28-51 (243)
428 2olj_A Amino acid ABC transpor 90.3 0.13 4.4E-06 51.8 2.9 23 196-218 50-72 (263)
429 1g6h_A High-affinity branched- 90.2 0.13 4.5E-06 51.7 2.9 23 196-218 33-55 (257)
430 2wji_A Ferrous iron transport 90.2 0.18 6.1E-06 46.6 3.6 23 197-219 4-26 (165)
431 2xb4_A Adenylate kinase; ATP-b 90.2 0.12 4.1E-06 50.7 2.5 21 198-218 2-22 (223)
432 3sr0_A Adenylate kinase; phosp 90.2 0.12 4.3E-06 49.7 2.5 21 198-218 2-22 (206)
433 3bgw_A DNAB-like replicative h 90.1 0.69 2.3E-05 50.5 8.7 51 196-250 197-247 (444)
434 1oix_A RAS-related protein RAB 90.1 0.15 5.2E-06 48.6 3.1 24 196-219 29-52 (191)
435 2ff7_A Alpha-hemolysin translo 90.1 0.14 4.7E-06 51.1 2.9 23 196-218 35-57 (247)
436 1pgv_A TMD-1, tropomodulin TMD 90.1 0.19 6.3E-06 47.7 3.6 84 568-651 37-135 (197)
437 2zej_A Dardarin, leucine-rich 90.1 0.13 4.6E-06 48.5 2.7 22 198-219 4-25 (184)
438 2d2e_A SUFC protein; ABC-ATPas 90.0 0.14 4.8E-06 51.2 2.9 23 196-218 29-51 (250)
439 3a8t_A Adenylate isopentenyltr 90.0 0.16 5.6E-06 52.5 3.4 23 196-218 40-62 (339)
440 3mfy_A V-type ATP synthase alp 90.0 0.75 2.6E-05 50.4 8.6 59 180-247 216-275 (588)
441 1vpl_A ABC transporter, ATP-bi 90.0 0.14 4.8E-06 51.3 2.9 24 196-219 41-64 (256)
442 1tf7_A KAIC; homohexamer, hexa 90.0 0.15 5.3E-06 57.3 3.5 25 195-219 280-304 (525)
443 3k1j_A LON protease, ATP-depen 89.9 0.19 6.4E-06 57.7 4.2 43 169-219 41-83 (604)
444 1yrb_A ATP(GTP)binding protein 89.9 0.16 5.5E-06 51.2 3.3 24 195-218 13-36 (262)
445 2zu0_C Probable ATP-dependent 89.9 0.15 5E-06 51.6 2.9 24 196-219 46-69 (267)
446 3cf2_A TER ATPase, transitiona 89.9 0.38 1.3E-05 56.3 6.6 99 166-285 474-580 (806)
447 2ixe_A Antigen peptide transpo 89.8 0.15 5.1E-06 51.6 2.9 24 196-219 45-68 (271)
448 2qi9_C Vitamin B12 import ATP- 89.7 0.15 5.2E-06 50.8 2.9 23 196-218 26-48 (249)
449 3crm_A TRNA delta(2)-isopenten 89.7 0.15 5E-06 52.7 2.8 22 197-218 6-27 (323)
450 2ghi_A Transport protein; mult 89.7 0.15 5.2E-06 51.2 2.9 24 196-219 46-69 (260)
451 2vp4_A Deoxynucleoside kinase; 89.7 0.15 5.2E-06 50.2 2.8 24 195-218 19-42 (230)
452 3vkg_A Dynein heavy chain, cyt 89.7 0.67 2.3E-05 62.1 9.4 137 197-344 1305-1468(3245)
453 3gqb_B V-type ATP synthase bet 89.7 0.25 8.7E-06 53.0 4.6 88 197-284 148-260 (464)
454 2nq2_C Hypothetical ABC transp 89.6 0.16 5.5E-06 50.8 2.9 24 196-219 31-54 (253)
455 2eyu_A Twitching motility prot 89.6 0.18 6E-06 50.8 3.2 109 196-318 25-136 (261)
456 3exa_A TRNA delta(2)-isopenten 89.6 0.16 5.4E-06 51.9 2.8 23 196-218 3-25 (322)
457 1ak2_A Adenylate kinase isoenz 89.6 0.14 5E-06 50.5 2.6 23 196-218 16-38 (233)
458 2ihy_A ABC transporter, ATP-bi 89.5 0.16 5.5E-06 51.6 2.9 23 196-218 47-69 (279)
459 2yz2_A Putative ABC transporte 89.5 0.16 5.5E-06 51.3 2.9 24 196-219 33-56 (266)
460 1ltq_A Polynucleotide kinase; 89.5 0.15 5.3E-06 52.6 2.8 22 197-218 3-24 (301)
461 3rfe_A Platelet glycoprotein I 89.4 0.5 1.7E-05 41.6 5.7 54 575-631 11-67 (130)
462 3e1s_A Exodeoxyribonuclease V, 89.3 0.2 6.7E-06 56.8 3.7 22 197-218 205-226 (574)
463 1q3t_A Cytidylate kinase; nucl 89.2 0.17 5.8E-06 50.2 2.8 25 194-218 14-38 (236)
464 3zvl_A Bifunctional polynucleo 89.1 0.16 5.5E-06 55.1 2.7 24 195-218 257-280 (416)
465 2c61_A A-type ATP synthase non 89.1 0.24 8.2E-06 53.6 3.9 88 197-284 153-258 (469)
466 2v9p_A Replication protein E1; 89.1 0.19 6.3E-06 51.6 2.9 23 196-218 126-148 (305)
467 3sop_A Neuronal-specific septi 89.1 0.2 6.7E-06 50.7 3.1 21 198-218 4-24 (270)
468 3cmu_A Protein RECA, recombina 89.0 0.61 2.1E-05 59.7 8.0 84 195-285 382-471 (2050)
469 2f9l_A RAB11B, member RAS onco 89.0 0.17 5.9E-06 48.5 2.6 24 196-219 5-28 (199)
470 2dyk_A GTP-binding protein; GT 88.9 0.21 7E-06 45.7 2.9 23 197-219 2-24 (161)
471 2wjg_A FEOB, ferrous iron tran 88.8 0.25 8.4E-06 46.7 3.5 25 195-219 6-30 (188)
472 1nlf_A Regulatory protein REPA 88.8 0.2 6.9E-06 51.1 3.1 23 196-218 30-52 (279)
473 2ck3_A ATP synthase subunit al 88.8 0.53 1.8E-05 51.3 6.3 89 196-284 162-271 (510)
474 3nh6_A ATP-binding cassette SU 88.7 0.19 6.4E-06 51.8 2.7 23 196-218 80-102 (306)
475 2qmh_A HPR kinase/phosphorylas 88.7 0.23 7.8E-06 46.9 3.0 24 196-219 34-57 (205)
476 4edh_A DTMP kinase, thymidylat 88.7 0.56 1.9E-05 45.4 5.9 24 195-218 5-28 (213)
477 1a7j_A Phosphoribulokinase; tr 88.7 0.091 3.1E-06 53.9 0.3 23 196-218 5-27 (290)
478 3end_A Light-independent proto 88.6 0.4 1.4E-05 49.6 5.2 40 195-236 40-79 (307)
479 2pjz_A Hypothetical protein ST 88.6 0.21 7E-06 50.3 2.9 22 197-218 31-52 (263)
480 3vr4_A V-type sodium ATPase ca 88.6 1 3.5E-05 49.7 8.4 58 180-246 221-279 (600)
481 3foz_A TRNA delta(2)-isopenten 88.4 0.23 7.7E-06 50.6 3.0 23 196-218 10-32 (316)
482 1nij_A Hypothetical protein YJ 88.4 0.23 7.9E-06 51.7 3.2 25 195-219 3-27 (318)
483 2ocp_A DGK, deoxyguanosine kin 88.4 0.23 7.8E-06 49.4 3.0 23 196-218 2-24 (241)
484 2gj8_A MNME, tRNA modification 88.2 0.24 8.2E-06 46.2 2.9 23 197-219 5-27 (172)
485 2ce2_X GTPase HRAS; signaling 88.2 0.23 8E-06 45.5 2.8 22 198-219 5-26 (166)
486 1fx0_A ATP synthase alpha chai 88.1 0.52 1.8E-05 51.3 5.8 85 196-284 163-264 (507)
487 3cmw_A Protein RECA, recombina 88.1 0.63 2.2E-05 58.8 7.3 80 198-284 385-470 (1706)
488 2bbs_A Cystic fibrosis transme 88.1 0.24 8.2E-06 50.6 3.0 24 196-219 64-87 (290)
489 3q72_A GTP-binding protein RAD 88.1 0.23 8E-06 45.7 2.8 22 198-219 4-25 (166)
490 2fz4_A DNA repair protein RAD2 88.0 1.8 6.3E-05 42.5 9.4 104 199-313 111-227 (237)
491 1svm_A Large T antigen; AAA+ f 88.0 0.34 1.2E-05 51.4 4.2 24 195-218 168-191 (377)
492 3kta_A Chromosome segregation 88.0 0.26 9E-06 46.4 3.1 21 198-218 28-48 (182)
493 2v3c_C SRP54, signal recogniti 88.0 0.26 8.9E-06 53.5 3.3 25 195-219 98-122 (432)
494 1tq4_A IIGP1, interferon-induc 87.8 0.29 9.9E-06 52.6 3.6 24 195-218 68-91 (413)
495 1z2a_A RAS-related protein RAB 87.8 0.24 8.3E-06 45.6 2.7 24 196-219 5-28 (168)
496 2nzj_A GTP-binding protein REM 87.7 0.35 1.2E-05 44.9 3.8 24 196-219 4-27 (175)
497 3fvq_A Fe(3+) IONS import ATP- 87.7 0.26 9E-06 51.7 3.1 23 196-218 30-52 (359)
498 2r8r_A Sensor protein; KDPD, P 87.7 0.51 1.7E-05 45.7 4.8 105 197-315 7-127 (228)
499 3q85_A GTP-binding protein REM 87.7 0.26 8.8E-06 45.5 2.8 22 197-218 3-24 (169)
500 1f6b_A SAR1; gtpases, N-termin 87.6 0.27 9.3E-06 47.1 3.0 23 197-219 26-48 (198)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-48 Score=449.40 Aligned_cols=316 Identities=21% Similarity=0.268 Sum_probs=257.3
Q ss_pred ecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC--ChhhhcccceeEEEEeCCCC--CHHHHHHHH
Q 042509 172 CGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN--DPDVRNHFKIRMWVCVSDPF--DEFSVAKSI 247 (892)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 247 (892)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23579999999999999999999998 67899999999999999985 899999999
Q ss_pred HHhccCCCC-------CCCCHHHHHHHHHHHhcCC-eEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh
Q 042509 248 IEGLEGETS-------NLGSLQSYLLRIYEAIAKK-KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR 319 (892)
Q Consensus 248 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 319 (892)
++++..... +..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999976521 1234567789999999996 9999999999743222322 16999999999999998
Q ss_pred hccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHhhhhc
Q 042509 320 MMES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSILDSE 398 (892)
Q Consensus 320 ~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~~ 398 (892)
.++. ...|++++|++++||+||.+.++.... .+.+++++++|+++|+|+|||++++|+.++.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 468999999999999999999875432 46788999999999999999999999999765 2 2333334433
Q ss_pred cccccccccchhhHHHhhhcCChHhHHHHHh-----------hhcCCCCCcccchHHHHHHHHHc--CCccCCC-CchHH
Q 042509 399 LWKVEEFENDLFGPLLMSFNDLPSRIKRCFT-----------FCAVFPKDWDIKKDELIKLWMAQ--GYITPKE-NKEME 464 (892)
Q Consensus 399 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~e 464 (892)
.+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456889999999999999999999 999999999999 8999999 9998776 56688
Q ss_pred HHHHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHHHhhccCcee
Q 042509 465 IIGDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQFLSKNERF 513 (892)
Q Consensus 465 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s~~e~~ 513 (892)
++++ ||++|+++||++....+ ...+|+|||++|+|+..++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999986542 345799999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.8e-39 Score=371.61 Aligned_cols=285 Identities=19% Similarity=0.191 Sum_probs=228.4
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccce-eEEEEeCCCCCHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKI-RMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 248 (892)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999998533 3689999999999999999999987788999986 99999999999988888887
Q ss_pred HhccCCC---C-C-------CCCHHHHHHHHHHHh---cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 249 EGLEGET---S-N-------LGSLQSYLLRIYEAI---AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 249 ~~l~~~~---~-~-------~~~~~~~~~~l~~~l---~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
+.+.... . . ..+.+.+...+++.+ .++|+||||||+|+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 7542210 0 0 012345566777766 68999999999996 3445443 2 68999999999
Q ss_pred hhHHhhccCCceEeCC------CCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCC-C
Q 042509 315 ETVSRMMESTNVMFIE------ELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKR-T 387 (892)
Q Consensus 315 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~-~ 387 (892)
+.++..+.....++++ +|+++|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998755444456666 999999999999883 3221 1223333 9999999999999999874 6
Q ss_pred HHHHHHhhhhccccccccccchhhHHHhhhcCChHhH-HHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHH
Q 042509 388 EEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRI-KRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEII 466 (892)
Q Consensus 388 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~ 466 (892)
.++|... ....+..++.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888763 13568999999999999999 99999999999999999999999999887 135
Q ss_pred HHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHH
Q 042509 467 GDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFA 504 (892)
Q Consensus 467 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~ 504 (892)
++.+|++|+++||++.. +....|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 78899999999999973 2224799999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-36 Score=387.80 Aligned_cols=311 Identities=22% Similarity=0.268 Sum_probs=246.8
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-hccc-ceeEEEEeCCCCC--HHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-RNHF-KIRMWVCVSDPFD--EFS 242 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~--~~~ 242 (892)
++..||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 45679999999999999997653 25789999999999999999999998544 4555 5678999998544 344
Q ss_pred HHHHHHHhccCCC----CCCCCHHHHHHHHHHHhcCC--eEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh
Q 042509 243 VAKSIIEGLEGET----SNLGSLQSYLLRIYEAIAKK--KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET 316 (892)
Q Consensus 243 ~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 316 (892)
.+..++..+.... ....+.+++...++..+.++ |+||||||+|+. ..|.. ..+|++||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHH
Confidence 4667777765533 22356788889999999877 999999999853 23333 257999999999999
Q ss_pred HHhh-ccCCceEeCCC-CCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHh
Q 042509 317 VSRM-MESTNVMFIEE-LSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSI 394 (892)
Q Consensus 317 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~ 394 (892)
++.. ++....+++.+ |+++|+++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45677899996 999999999999884322 23456789999999999999999999998764 356665
Q ss_pred hhhccccc----c----ccccchhhHHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHHH
Q 042509 395 LDSELWKV----E----EFENDLFGPLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEII 466 (892)
Q Consensus 395 ~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~ 466 (892)
++...... . .....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~ 410 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEE 410 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHH
Confidence 54322111 1 1114688999999999999999999999999999999999999999554 467
Q ss_pred HHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHHHhhccCc
Q 042509 467 GDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQFLSKNE 511 (892)
Q Consensus 467 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s~~e 511 (892)
++.++++|+++||++... .+...+|+||+++|+++...+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 889999999999998643 344567999999999999887765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=331.05 Aligned_cols=305 Identities=22% Similarity=0.277 Sum_probs=233.2
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-hccc-ceeEEEEeCCCCCHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-RNHF-KIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~ 245 (892)
+..||||+.++++|.++|.... .+.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4569999999999999997543 24789999999999999999999998666 7889 57999999875 3444444
Q ss_pred HH---HHhccCC----CCCCCCHHHHHHHHHHHhcC--CeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh
Q 042509 246 SI---IEGLEGE----TSNLGSLQSYLLRIYEAIAK--KKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET 316 (892)
Q Consensus 246 ~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 316 (892)
.+ +..+... .....+.+.....+...+.+ +++||||||+|+. ..+. . ..+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~-~---l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK-A---FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH-T---TCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH-H---hcCCCeEEEECCCcH
Confidence 44 3344321 12345677788888888865 7899999999852 2222 2 256899999999998
Q ss_pred HHhhccCCceEeC---CCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHH
Q 042509 317 VSRMMESTNVMFI---EELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQS 393 (892)
Q Consensus 317 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~ 393 (892)
++..+.. ..+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|+|+..+|..++.+. ..|..
T Consensus 269 ~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 8876442 33443 68999999999999885421 12245688999999999999999999998764 35776
Q ss_pred hhhhccccc--------cccccchhhHHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCCCchHHH
Q 042509 394 ILDSELWKV--------EEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKENKEMEI 465 (892)
Q Consensus 394 ~~~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~ 465 (892)
.++...... ......+..++..||+.||++.|.||.+||+||+++.|+.+.+..+|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 654322111 11224688999999999999999999999999999999999999999543 24
Q ss_pred HHHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHHHhhc
Q 042509 466 IGDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQFLS 508 (892)
Q Consensus 466 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~~~s 508 (892)
.++.++++|+++||++... .+....|.||+++++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 5688999999999998532 234457999999999998773
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.5e-25 Score=265.32 Aligned_cols=337 Identities=16% Similarity=0.141 Sum_probs=222.2
Q ss_pred CCCccccccceEEEEEeCCCCC------------------cccccc--CCCcceEEEecCC--ccccChhhcCcCCcceE
Q 042509 520 PEESTSMEKLRHFMLVLGKSVA------------------FPVSIF--KARKLRSLLIVGP--ICEIPKEIENFMYLRFL 577 (892)
Q Consensus 520 ~~~~~~~~~lr~L~l~~~~~~~------------------~p~~~~--~~~~Lr~L~l~~~--~~~lp~~i~~l~~L~~L 577 (892)
|..+..+++++.|++++|.+.. +|..+. ++++|++|+++++ ...+|..++++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 3445568899999999999887 888877 9999999999886 45789899999999999
Q ss_pred EcCCCC-CCc--ccccccCCC-------CCCEEeccCcCCccccch--hhhccccCCeecccccccccccccccCCcCCC
Q 042509 578 KLSKAE-IVE--LPETCCELF-------NLQTLEMEDCCNLKRLPQ--EIGKLVNLRYLIYNDSYLHYLPRGIERLTCLR 645 (892)
Q Consensus 578 ~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~ 645 (892)
+|++|. ++. +|..++++. +|++|++++|. +..+|. .++++++|++|.+++|.+..+| .++++++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 999998 874 888777665 99999999998 558998 8999999999988888888888 889999999
Q ss_pred cCCceEeccCCCccCCCCCCccc-ccccccCCCceEEeccCCCCChhhhhhhcccCC--CCCCeEEEEeeCCCchhhHhh
Q 042509 646 TLSEFVVSRSGGKYGSKASNLEG-LRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKK--KNLFRLELWFNNKEEEEEEES 722 (892)
Q Consensus 646 ~L~l~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~ 722 (892)
.|+++.|.+.. .|.....+.. |+.| .+.+.. +.. .+..+..+ ++|+.|+|++|.+.+..+
T Consensus 599 ~L~Ls~N~l~~--lp~~l~~l~~~L~~L-------~Ls~N~-L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip--- 661 (876)
T 4ecn_A 599 DLKLDYNQIEE--IPEDFCAFTDQVEGL-------GFSHNK-LKY----IPNIFNAKSVYVMGSVDFSYNKIGSEGR--- 661 (876)
T ss_dssp EEECCSSCCSC--CCTTSCEECTTCCEE-------ECCSSC-CCS----CCSCCCTTCSSCEEEEECCSSCTTTTSS---
T ss_pred EEECcCCcccc--chHHHhhccccCCEE-------ECcCCC-CCc----CchhhhccccCCCCEEECcCCcCCCccc---
Confidence 99999888763 3333333443 4443 221111 111 11223333 347777777777642100
Q ss_pred hhhhhccHHHHhhhCC--CCCCCCeEEEeeecCCCCCCchhh-hccCCcEEEEeccCCCCcCCCCC--------CCCCCC
Q 042509 723 MEENQANQGAISEALR--PPPNLESLEIWEYKGKAVFENWIV-SLNKLKKLFLINCYNCEIMPPLG--------KLPFLE 791 (892)
Q Consensus 723 ~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~--------~l~~L~ 791 (892)
.++..+. ..++|+.|+|++|.+.. +|.++. .+++|+.|+|++|.+...++.+. ++++|+
T Consensus 662 ---------~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 662 ---------NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp ---------SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred ---------cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 0111111 23466667777666665 665554 56666777776665553333322 223666
Q ss_pred eEEEcceEEEEeCCccc----------CCCCCCCCCCC---CCCCccceeeccccccccccccccccCcccccCcCCccc
Q 042509 792 SLKIRNMNVKKVGDEFL----------GIKSNHSSGPA---IAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLN 858 (892)
Q Consensus 792 ~L~L~~~~l~~~~~~~~----------~~~~n~~~~~~---~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~ 858 (892)
.|+|++|.++.++..+. .++.|.+++.+ ..+++|+.|.+.+...+.. +.+.+..+..+..+++|+
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~--N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG--NRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTC--CBCCCCCCTTGGGCSSCC
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccc--ccccccChHHHhcCCCCC
Confidence 66666666665554332 23344444322 2456667776655321110 112223455667899999
Q ss_pred eeeecccccCcCCCcCCCCCcceE-EEEcCCCC
Q 042509 859 SLEIILCAKLKSLPNQLLQRTKLN-LNISLCPT 890 (892)
Q Consensus 859 ~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~~ 890 (892)
.|++++| .+..+|..+. ++|+ |+|++||-
T Consensus 810 ~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred EEECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 9999999 6799998764 6999 99999974
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.4e-25 Score=263.68 Aligned_cols=332 Identities=17% Similarity=0.183 Sum_probs=194.3
Q ss_pred CCccccccceEEEEEeCCCCC------------------cccccc--CCCcceEEEecCC--ccccChhhcCcCCcceEE
Q 042509 521 EESTSMEKLRHFMLVLGKSVA------------------FPVSIF--KARKLRSLLIVGP--ICEIPKEIENFMYLRFLK 578 (892)
Q Consensus 521 ~~~~~~~~lr~L~l~~~~~~~------------------~p~~~~--~~~~Lr~L~l~~~--~~~lp~~i~~l~~L~~L~ 578 (892)
..+..++++++|++++|.+.. +|..+. ++++|++|+++++ ...+|..++++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 334456777777777777766 777777 7777777777765 345677777777777777
Q ss_pred cCCCC-CC--cccccccCC------CCCCEEeccCcCCccccch--hhhccccCCeecccccccc-cccccccCCcCCCc
Q 042509 579 LSKAE-IV--ELPETCCEL------FNLQTLEMEDCCNLKRLPQ--EIGKLVNLRYLIYNDSYLH-YLPRGIERLTCLRT 646 (892)
Q Consensus 579 L~~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~~~~~~l~-~lp~~i~~L~~L~~ 646 (892)
+++|. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|.+++|.+. .+| .++++++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 77776 66 377777665 777777777776 447777 7777777777766666666 677 6777777777
Q ss_pred CCceEeccCCCccCCCCCCccc-ccccccCCCceEEeccCCCCChhhhhhhcccC--CCCCCeEEEEeeCCCchhhHhhh
Q 042509 647 LSEFVVSRSGGKYGSKASNLEG-LRHLNHLRGFLAIVGLGNVKDVDEAKNAELEK--KKNLFRLELWFNNKEEEEEEESM 723 (892)
Q Consensus 647 L~l~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~ 723 (892)
|+++.|.+.. .|.....+.. |+.| .+.+.. +.. .+..+.. +++|+.|+++.|.+.
T Consensus 358 L~L~~N~l~~--lp~~l~~l~~~L~~L-------~Ls~N~-l~~----lp~~~~~~~l~~L~~L~Ls~N~l~-------- 415 (636)
T 4eco_A 358 LNLAYNQITE--IPANFCGFTEQVENL-------SFAHNK-LKY----IPNIFDAKSVSVMSAIDFSYNEIG-------- 415 (636)
T ss_dssp EECCSSEEEE--CCTTSEEECTTCCEE-------ECCSSC-CSS----CCSCCCTTCSSCEEEEECCSSCTT--------
T ss_pred EECCCCcccc--ccHhhhhhcccCcEE-------EccCCc-Ccc----cchhhhhcccCccCEEECcCCcCC--------
Confidence 7777766542 2222222333 3332 111110 000 1112222 235666666666554
Q ss_pred hhhhccHHHHhhhCC-------CCCCCCeEEEeeecCCCCCCchhh-hccCCcEEEEeccCCCCcCCCCCC--------C
Q 042509 724 EENQANQGAISEALR-------PPPNLESLEIWEYKGKAVFENWIV-SLNKLKKLFLINCYNCEIMPPLGK--------L 787 (892)
Q Consensus 724 ~~~~~~~~~~~~~l~-------~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~--------l 787 (892)
...+..+. .+++|+.|++++|.++. +|..+. .+++|+.|+|++|.+...++.... +
T Consensus 416 -------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 416 -------SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp -------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred -------CcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 22223333 34456666666666554 554433 355666666666554432222111 1
Q ss_pred CCCCeEEEcceEEEEeCCccc----------CCCCCCCCCCC---CCCCccceeeccccccccccccccccCcccccCcC
Q 042509 788 PFLESLKIRNMNVKKVGDEFL----------GIKSNHSSGPA---IAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIM 854 (892)
Q Consensus 788 ~~L~~L~L~~~~l~~~~~~~~----------~~~~n~~~~~~---~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~l 854 (892)
++|++|+|++|.++.++..+. .++.|.+++.+ ..+++|+.|.+.+...+.. +.+.+..+..+..+
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~--N~l~~~~p~~l~~l 565 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG--NRTLREWPEGITLC 565 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTC--CBCCCCCCTTGGGC
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccccc--CcccccChHHHhcC
Confidence 256666666665555443322 23334443322 2456677776654221000 12222245566789
Q ss_pred CccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 855 PQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 855 p~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
++|+.|++++| .++.+|..+. ++|+ |++++||
T Consensus 566 ~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 566 PSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC
Confidence 99999999999 6799998765 7999 9999986
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=8.5e-26 Score=271.95 Aligned_cols=252 Identities=23% Similarity=0.209 Sum_probs=171.5
Q ss_pred ccceEEEEEeCCCC-CccccccCCCcceEEEecCC-cc-ccChh-hcCcCCcceEEcCCCCCC-cccccccCCC-CCCEE
Q 042509 527 EKLRHFMLVLGKSV-AFPVSIFKARKLRSLLIVGP-IC-EIPKE-IENFMYLRFLKLSKAEIV-ELPETCCELF-NLQTL 600 (892)
Q Consensus 527 ~~lr~L~l~~~~~~-~~p~~~~~~~~Lr~L~l~~~-~~-~lp~~-i~~l~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L 600 (892)
+++++|++++|.+. .+|..+..+++|++|+++++ +. .+|.. ++++++|++|++++|.++ .+|..+.++. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 56666666666654 45556666666777766665 22 45554 666667777777776665 6666666665 67777
Q ss_pred eccCcCCccccchhhhc--cccCCeecccccccc-cccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCC
Q 042509 601 EMEDCCNLKRLPQEIGK--LVNLRYLIYNDSYLH-YLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRG 677 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~--l~~L~~L~~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 677 (892)
++++|...+.+|..+.. +++|++|.+++|.+. .+|..+.++++|++|+++.|.... ..+.....+..|+.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~------ 446 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRD------ 446 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCE------
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-cccHHHhcCCCCCE------
Confidence 77766655556666655 667777755555554 567777777888888777776653 12222222333332
Q ss_pred ceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 042509 678 FLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVF 757 (892)
Q Consensus 678 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 757 (892)
+.+.+..- ....+..+..+++|+.|++++|.+. ..++..+..+++|+.|+|++|.+++.+
T Consensus 447 -L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 447 -LKLWLNML----EGEIPQELMYVKTLETLILDFNDLT---------------GEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp -EECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCC---------------SCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred -EECCCCcc----cCcCCHHHcCCCCceEEEecCCccc---------------CcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 22222111 1112345677889999999998876 345667788899999999999999779
Q ss_pred CchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEE-EeCC
Q 042509 758 ENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVK-KVGD 805 (892)
Q Consensus 758 p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~-~~~~ 805 (892)
|.++..+++|+.|+|++|.....+|. ++.+++|+.|++++|.++ .+|.
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999999999999999988766665 899999999999999976 4443
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.3e-25 Score=250.21 Aligned_cols=336 Identities=16% Similarity=0.170 Sum_probs=241.4
Q ss_pred cccceEEEEEeCCCCCc-cccccCCCcceEEEecCCcc--cc-ChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGPIC--EI-PKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~~~--~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L 600 (892)
++++++|++++|.+..+ |..+.++++|++|+++++.. .+ +..|+++++|++|+|++|.++.+ |..++++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 57899999999999877 66789999999999998732 44 56789999999999999999865 7789999999999
Q ss_pred eccCcCCccccchh--hhccccCCeecccccccccc-ccc-ccCCcCCCcCCceEeccCCCccCCCCCCc--cccccccc
Q 042509 601 EMEDCCNLKRLPQE--IGKLVNLRYLIYNDSYLHYL-PRG-IERLTCLRTLSEFVVSRSGGKYGSKASNL--EGLRHLNH 674 (892)
Q Consensus 601 ~L~~~~~~~~lp~~--i~~l~~L~~L~~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~~ 674 (892)
++++|...+..|.. +.++++|++|.+++|.+..+ |.. +.++++|++|++..|..... .+.....+ ..+..|
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~L~~L-- 185 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLL-- 185 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-CTTTSGGGTTCEEEEE--
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-Chhhhhcccccccccc--
Confidence 99999855555655 89999999998888888877 544 88999999999999887652 12212121 122222
Q ss_pred CCCceEEecc--CCCCC--hhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhh--hc--------------------
Q 042509 675 LRGFLAIVGL--GNVKD--VDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEEN--QA-------------------- 728 (892)
Q Consensus 675 L~~~l~i~~l--~~~~~--~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~--~~-------------------- 728 (892)
.+.+. ..+.. ........+..+++|+.|++++|.+.+..+....... ..
T Consensus 186 -----~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 186 -----RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp -----ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred -----ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 11111 11110 0111122344567888999988887643322110000 00
Q ss_pred cHHHHhhhC--CCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCC
Q 042509 729 NQGAISEAL--RPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGD 805 (892)
Q Consensus 729 ~~~~~~~~l--~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~ 805 (892)
........+ ...++|+.|++++|.+.+..|.++..+++|+.|+|++|.+...++. ++.+++|++|+|++|.++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 000000000 0236899999999999886788889999999999999988777664 8899999999999999888765
Q ss_pred cccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcC-CCCCcceE-E
Q 042509 806 EFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQ-LLQRTKLN-L 883 (892)
Q Consensus 806 ~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~-l~~l~~L~-L 883 (892)
..+. .+++|+.|.+.+. .+..+ .+..+..+++|+.|++++| +++.+|.. +..+++|+ |
T Consensus 341 ~~~~-----------~l~~L~~L~Ls~N-~l~~~-------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 341 RMFE-----------NLDKLEVLDLSYN-HIRAL-------GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp GGGT-----------TCTTCCEEECCSS-CCCEE-------CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hHhc-----------CcccCCEEECCCC-ccccc-------ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 5442 5788899988874 33333 2455668999999999999 78888874 46799999 9
Q ss_pred EEcCCC
Q 042509 884 NISLCP 889 (892)
Q Consensus 884 ~i~~c~ 889 (892)
+++++|
T Consensus 401 ~l~~N~ 406 (455)
T 3v47_A 401 WLHTNP 406 (455)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 998876
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=7e-26 Score=266.24 Aligned_cols=310 Identities=13% Similarity=0.102 Sum_probs=225.6
Q ss_pred CccccccCCCcceEEEecCC-ccc------------------cChhhc--CcCCcceEEcCCCCCC-cccccccCCCCCC
Q 042509 541 AFPVSIFKARKLRSLLIVGP-ICE------------------IPKEIE--NFMYLRFLKLSKAEIV-ELPETCCELFNLQ 598 (892)
Q Consensus 541 ~~p~~~~~~~~Lr~L~l~~~-~~~------------------lp~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 598 (892)
.+|..+.++++|++|+++++ +.. +|..++ ++++|++|+|++|.+. .+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 37778899999999999986 555 899998 9999999999999955 8999999999999
Q ss_pred EEeccCcC-Ccc-ccchhhhcc------ccCCeecccccccccccc--cccCCcCCCcCCceEeccCCCccCCCCCCccc
Q 042509 599 TLEMEDCC-NLK-RLPQEIGKL------VNLRYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRSGGKYGSKASNLEG 668 (892)
Q Consensus 599 ~L~L~~~~-~~~-~lp~~i~~l------~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 668 (892)
+|++++|. ..+ .+|..++++ ++|++|.+++|.+..+|. .++++++|++|+++.|...+ ..| ....+..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCC
Confidence 99999997 555 799999887 999999888888999998 89999999999999887763 122 2233333
Q ss_pred ccccccCCCceEEeccCCCCChhhhhhhcccCCCC-CCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCC--CCCCe
Q 042509 669 LRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKN-LFRLELWFNNKEEEEEEESMEENQANQGAISEALRPP--PNLES 745 (892)
Q Consensus 669 L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~ 745 (892)
|+.|. +.+.. +. ..+..+..+++ |+.|++++|.+. .++..+... ++|+.
T Consensus 355 L~~L~-------L~~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~l~----------------~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 355 LASLN-------LAYNQ----IT-EIPANFCGFTEQVENLSFAHNKLK----------------YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp ESEEE-------CCSSE----EE-ECCTTSEEECTTCCEEECCSSCCS----------------SCCSCCCTTCSSCEEE
T ss_pred CCEEE-------CCCCc----cc-cccHhhhhhcccCcEEEccCCcCc----------------ccchhhhhcccCccCE
Confidence 33332 11110 00 12245777888 999999999874 245555544 48999
Q ss_pred EEEeeecCCCCCCchhh-------hccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCccc---------
Q 042509 746 LEIWEYKGKAVFENWIV-------SLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFL--------- 808 (892)
Q Consensus 746 L~L~~~~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~--------- 808 (892)
|++++|.+.+..|.++. .+++|+.|+|++|.+...++. +..+++|++|+|++|.++.++...+
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 99999999987788887 778999999999987755544 5569999999999999887765433
Q ss_pred -------CCCCCCCCCCCC-----CCCccceeeccccccccccccccccCcccccCcCCccceeeecc------cccCcC
Q 042509 809 -------GIKSNHSSGPAI-----AFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIIL------CAKLKS 870 (892)
Q Consensus 809 -------~~~~n~~~~~~~-----~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~------c~~L~~ 870 (892)
.++.|.++..+. .+++|+.|.+.+. .+.. .+..+..+++|+.|++++ |.-...
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~--------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSK--------FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSS--------CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCC--------cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 234444443221 3455555555542 2222 223444677777777743 433456
Q ss_pred CCcCCCCCcceE-EEEcCCC
Q 042509 871 LPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 871 lp~~l~~l~~L~-L~i~~c~ 889 (892)
+|..+..+++|+ |++++|.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSC
T ss_pred ChHHHhcCCCCCEEECCCCc
Confidence 777777777777 7777764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.3e-25 Score=264.35 Aligned_cols=284 Identities=17% Similarity=0.160 Sum_probs=143.5
Q ss_pred cChhhcCcCCcceEEcCCCCCCc------------------cccccc--CCCCCCEEeccCcCCccccchhhhccccCCe
Q 042509 564 IPKEIENFMYLRFLKLSKAEIVE------------------LPETCC--ELFNLQTLEMEDCCNLKRLPQEIGKLVNLRY 623 (892)
Q Consensus 564 lp~~i~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 623 (892)
+|..++++++|++|+|++|.++. +|..++ ++++|++|+|++|...+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45555556666666666665554 555555 5666666666655555555555556666666
Q ss_pred ecccccc-cc--cccccccCCc-------CCCcCCceEeccCCCccCC--CCCCcccccccccCCCceEEeccCCCCChh
Q 042509 624 LIYNDSY-LH--YLPRGIERLT-------CLRTLSEFVVSRSGGKYGS--KASNLEGLRHLNHLRGFLAIVGLGNVKDVD 691 (892)
Q Consensus 624 L~~~~~~-l~--~lp~~i~~L~-------~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~ 691 (892)
|.+++|. +. .+|..+++++ +|++|+++.|.+.. .|. ....+..|+.| .+.+.. +.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L-------~Ls~N~-l~--- 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE--FPASASLQKMVKLGLL-------DCVHNK-VR--- 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--CCCHHHHTTCTTCCEE-------ECTTSC-CC---
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--cCChhhhhcCCCCCEE-------ECCCCC-cc---
Confidence 6544443 43 2554444443 55555555555441 111 12222222222 111100 00
Q ss_pred hhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCC-CCeEEEeeecCCCCCCchhhhcc--CCc
Q 042509 692 EAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPN-LESLEIWEYKGKAVFENWIVSLN--KLK 768 (892)
Q Consensus 692 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~p~~~~~l~--~L~ 768 (892)
..+ .+..+++|+.|+|++|.+. .++..+..+++ |+.|+|++|.+.. +|.++..++ +|+
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N~l~----------------~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYNQIE----------------EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSSCCS----------------CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEE
T ss_pred -cch-hhcCCCcceEEECcCCccc----------------cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCC
Confidence 001 3444455555555555442 13333444444 5555555555443 444443332 255
Q ss_pred EEEEeccCCCCcCCCCC------CCCCCCeEEEcceEEEEeCCc---------ccCCCCCCCCCCC-----------CCC
Q 042509 769 KLFLINCYNCEIMPPLG------KLPFLESLKIRNMNVKKVGDE---------FLGIKSNHSSGPA-----------IAF 822 (892)
Q Consensus 769 ~L~L~~~~~~~~~~~l~------~l~~L~~L~L~~~~l~~~~~~---------~~~~~~n~~~~~~-----------~~f 822 (892)
.|+|++|.+...+|.+. .+++|+.|+|++|.++.++.. .+.++.|.+...+ ..+
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence 55555444433332211 223444444444444333321 1122233332111 123
Q ss_pred CccceeeccccccccccccccccCcccccC--cCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 823 PKLKHLKFMKLSEWEEWDFGITRSGKEEIT--IMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 823 ~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~--~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
++|+.|.+.++ .+..+ +..+. .+|+|+.|++++| .++.+|..+..+++|+ |++++|+
T Consensus 728 ~~L~~L~Ls~N-~L~~l--------p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLTSL--------SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp GGCCEEECCSS-CCCCC--------CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCccEEECCCC-CCccc--------hHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 37888888774 44433 33443 7899999999999 7888999999999999 9998755
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=242.62 Aligned_cols=294 Identities=19% Similarity=0.134 Sum_probs=183.7
Q ss_pred cccceEEEEEeCCCCCcc-ccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
+.+++.|++++|.+..++ ..+.++++|++|+++++ +..+ |..|+++++|++|+|++|.++.+|.. +.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 567888999888887774 46788888999988876 4544 67788888999999998888888764 67888899999
Q ss_pred ccCcCCccccchhhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceE
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLA 680 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 680 (892)
+++|......|..+.++++|++|.++.|.+..++ ..+.++++|++|++..|.... ..+.....+..|+ .+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~-------~L~ 182 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLI-------VLR 182 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCC-------EEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCc-------EEe
Confidence 9888855556777888888999877777777654 457888888888888776543 1111111122222 222
Q ss_pred EeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCC-c
Q 042509 681 IVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFE-N 759 (892)
Q Consensus 681 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p-~ 759 (892)
+.+.. +. ......+..+++|+.|+++.|... ..++.......+|++|++++|.++. +| .
T Consensus 183 l~~n~-i~---~~~~~~~~~l~~L~~L~l~~~~~~---------------~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~ 242 (477)
T 2id5_A 183 LRHLN-IN---AIRDYSFKRLYRLKVLEISHWPYL---------------DTMTPNCLYGLNLTSLSITHCNLTA-VPYL 242 (477)
T ss_dssp EESCC-CC---EECTTCSCSCTTCCEEEEECCTTC---------------CEECTTTTTTCCCSEEEEESSCCCS-CCHH
T ss_pred CCCCc-Cc---EeChhhcccCcccceeeCCCCccc---------------cccCcccccCccccEEECcCCcccc-cCHH
Confidence 22211 00 011124556666777777665543 1222333334467777777776665 55 3
Q ss_pred hhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccc
Q 042509 760 WIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEE 838 (892)
Q Consensus 760 ~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~ 838 (892)
.+..+++|+.|+|++|.+....+. +..+++|+.|+|++|.++.++...+ ..+++|+.|.+.+. .+..
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~l~~L~~L~L~~N-~l~~ 310 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-----------RGLNYLRVLNVSGN-QLTT 310 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB-----------TTCTTCCEEECCSS-CCSC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh-----------cCcccCCEEECCCC-cCce
Confidence 455666777777776665544443 6666677777777666666543322 24456666666553 2222
Q ss_pred cccccccCcccccCcCCccceeeecccc
Q 042509 839 WDFGITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 839 ~~~~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
+ .+..+..+++|+.|++.+||
T Consensus 311 ~-------~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 311 L-------EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp C-------CGGGBSCGGGCCEEECCSSC
T ss_pred e-------CHhHcCCCcccCEEEccCCC
Confidence 2 22334456666666666663
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.6e-24 Score=234.38 Aligned_cols=301 Identities=16% Similarity=0.178 Sum_probs=229.5
Q ss_pred ccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEecc
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEME 603 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 603 (892)
.++++++|++.++.+..+| .+..+++|++|+++++ +..++. +.++++|++|++++|.++.+| .+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 3788999999999988887 5888999999999886 566666 889999999999999998876 58899999999999
Q ss_pred CcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEec
Q 042509 604 DCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVG 683 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 683 (892)
+|. +..+|. +..+++|++|.+++|.....+..+.++++|++|++..|..... ..+..+. .|+ .+.+.+
T Consensus 119 ~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~l~---~L~-~L~l~~ 186 (347)
T 4fmz_A 119 EDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV------TPIANLT---DLY-SLSLNY 186 (347)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC------GGGGGCT---TCS-EEECTT
T ss_pred CCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc------hhhccCC---CCC-EEEccC
Confidence 988 677766 8899999999666664333444588999999999888776541 1122333 333 333332
Q ss_pred cCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhh
Q 042509 684 LGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVS 763 (892)
Q Consensus 684 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 763 (892)
.. +... ..+..+++|+.|++++|.+.. .. .+..+++|++|++++|.++. +|. +..
T Consensus 187 n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~----------------~~-~~~~~~~L~~L~l~~n~l~~-~~~-~~~ 241 (347)
T 4fmz_A 187 NQ-IEDI-----SPLASLTSLHYFTAYVNQITD----------------IT-PVANMTRLNSLKIGNNKITD-LSP-LAN 241 (347)
T ss_dssp SC-CCCC-----GGGGGCTTCCEEECCSSCCCC----------------CG-GGGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred Cc-cccc-----ccccCCCccceeecccCCCCC----------------Cc-hhhcCCcCCEEEccCCccCC-Ccc-hhc
Confidence 21 1111 226778999999999998752 11 15678899999999999988 665 788
Q ss_pred ccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccccccccc
Q 042509 764 LNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGI 843 (892)
Q Consensus 764 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~ 843 (892)
+++|+.|+|++|.... ++.+..+++|++|++++|.++.++. ...+++|+.|.+.++ .+...
T Consensus 242 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~L~~n-~l~~~---- 302 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDISV-------------LNNLSQLNSLFLNNN-QLGNE---- 302 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-------------GGGCTTCSEEECCSS-CCCGG----
T ss_pred CCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCChh-------------hcCCCCCCEEECcCC-cCCCc----
Confidence 9999999999997655 4668899999999999998776521 236788999998886 33322
Q ss_pred ccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 844 TRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 844 ~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
.+..+..+|+|+.|++++| .++.++. +..+++|+ |++++|+
T Consensus 303 ---~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 ---DMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp ---GHHHHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ---ChhHhhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 2334557899999999999 5887776 77899999 9999986
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5e-24 Score=247.69 Aligned_cols=142 Identities=17% Similarity=0.246 Sum_probs=113.9
Q ss_pred hCCCCCCCCeEEEeeecCCCCCC---chhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC------c
Q 042509 736 ALRPPPNLESLEIWEYKGKAVFE---NWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD------E 806 (892)
Q Consensus 736 ~l~~~~~L~~L~L~~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~------~ 806 (892)
.+..+++|+.|++++|.+++ +| ..+..+++|+.|+|++|.+...++.++.+++|++|++++|.++.++. +
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~ 434 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCS
T ss_pred hhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCce
Confidence 36678899999999999887 55 34778999999999999877666668899999999999999876654 3
Q ss_pred ccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCc-CCCCCcceE-EE
Q 042509 807 FLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPN-QLLQRTKLN-LN 884 (892)
Q Consensus 807 ~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~-~l~~l~~L~-L~ 884 (892)
.+..+.|.+++....+++|+.|.+.+. .+..++ . ...+++|+.|++++| +++.+|. .+..+++|+ |+
T Consensus 435 ~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip--------~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 435 VLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLP--------D-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC--------C-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred EEECCCCChhhhcccCChhcEEECCCC-ccCcCC--------C-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence 456778888877778899999998875 444333 1 236899999999999 7887765 478899999 99
Q ss_pred EcCCC
Q 042509 885 ISLCP 889 (892)
Q Consensus 885 i~~c~ 889 (892)
+++||
T Consensus 504 l~~N~ 508 (549)
T 2z81_A 504 LHTNP 508 (549)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 99987
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.7e-24 Score=234.86 Aligned_cols=300 Identities=17% Similarity=0.115 Sum_probs=234.4
Q ss_pred ccccceEEEEEeCCCCCcccc-ccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEE
Q 042509 525 SMEKLRHFMLVLGKSVAFPVS-IFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTL 600 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~-~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L 600 (892)
...+++++++.++.+..+|.. +..+++|++|+++++ +..++ ..++++++|++|+|++|.++.+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 368999999999999999876 578999999999986 56665 47899999999999999999775 458999999999
Q ss_pred eccCcCCccccchh-hhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCc
Q 042509 601 EMEDCCNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGF 678 (892)
Q Consensus 601 ~L~~~~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 678 (892)
++++|. +..+|.. +.++++|++|.+++|.+..++. .+.++++|++|+++.|..... ....+..|+.|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L------ 191 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA------ 191 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEE------
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccccccee------
Confidence 999998 7788876 5899999999888888887765 489999999999998877641 11222333322
Q ss_pred eEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCC
Q 042509 679 LAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFE 758 (892)
Q Consensus 679 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p 758 (892)
.+.+. .+ ..+...++|+.|++++|.+.. ++. ..+++|+.|++++|.+++ .
T Consensus 192 -~l~~n-~l--------~~~~~~~~L~~L~l~~n~l~~----------------~~~--~~~~~L~~L~l~~n~l~~-~- 241 (390)
T 3o6n_A 192 -NVSYN-LL--------STLAIPIAVEELDASHNSINV----------------VRG--PVNVELTILKLQHNNLTD-T- 241 (390)
T ss_dssp -ECCSS-CC--------SEEECCSSCSEEECCSSCCCE----------------EEC--CCCSSCCEEECCSSCCCC-C-
T ss_pred -ecccc-cc--------cccCCCCcceEEECCCCeeee----------------ccc--cccccccEEECCCCCCcc-c-
Confidence 22111 01 123445789999999998752 222 235789999999999987 4
Q ss_pred chhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccc
Q 042509 759 NWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWE 837 (892)
Q Consensus 759 ~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~ 837 (892)
.++..+++|+.|+|++|.+...+|. ++.+++|++|+|++|.++.++... ..+|+|+.|.+.+. .+.
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG------------QPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS------------SCCTTCCEEECCSS-CCC
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc------------CCCCCCCEEECCCC-cce
Confidence 6788999999999999987776554 899999999999999988775322 36789999999875 444
Q ss_pred ccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 838 EWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 838 ~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
.++ ..+..+++|+.|++++| .++.+| +..+++|+ |+++++|
T Consensus 309 ~~~--------~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 309 HVE--------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCG--------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ecC--------ccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 333 33457899999999999 688887 56789999 9999886
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.9e-23 Score=245.89 Aligned_cols=338 Identities=21% Similarity=0.169 Sum_probs=197.7
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 601 (892)
++++++|++++|.+..++. .+.++++|++|+++++ +..+ |..|+++++|++|+|++|.++.+ |..++++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5678888888888777654 5777888888888875 5555 55678888888888888887766 67788888888888
Q ss_pred ccCcCCccccc-hhhhccccCCeecccccccc--cccccccCCcCCCcCCceEeccCCCccCCCCCCcccccc----c--
Q 042509 602 MEDCCNLKRLP-QEIGKLVNLRYLIYNDSYLH--YLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRH----L-- 672 (892)
Q Consensus 602 L~~~~~~~~lp-~~i~~l~~L~~L~~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~----L-- 672 (892)
+++|. +..+| ..++++++|++|.++.|.+. .+|..++++++|++|+++.|.... ..+.....+..|+. |
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEEC
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeec
Confidence 88887 44443 66788888888877777766 367778888888888887776543 11111222222211 0
Q ss_pred --c-------------cCCCceEEeccCC---------------------------------------------------
Q 042509 673 --N-------------HLRGFLAIVGLGN--------------------------------------------------- 686 (892)
Q Consensus 673 --~-------------~L~~~l~i~~l~~--------------------------------------------------- 686 (892)
+ +++ .+.+.+...
T Consensus 189 ~~n~l~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTTTCEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCcccccCceee-eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 0 000 111111000
Q ss_pred ---CCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhh
Q 042509 687 ---VKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVS 763 (892)
Q Consensus 687 ---~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 763 (892)
........ ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +|.+ .
T Consensus 268 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~----------------~l~-~l~~~~~L~~L~l~~n~l~~-lp~~--~ 326 (606)
T 3vq2_A 268 LTYTNDFSDDI-VKFHCLANVSAMSLAGVSIK----------------YLE-DVPKHFKWQSLSIIRCQLKQ-FPTL--D 326 (606)
T ss_dssp ECCCTTCCGGG-GSCGGGTTCSEEEEESCCCC----------------CCC-CCCTTCCCSEEEEESCCCSS-CCCC--C
T ss_pred ccccccccccc-cccccCCCCCEEEecCccch----------------hhh-hccccccCCEEEcccccCcc-cccC--C
Confidence 00000001 11444566666666666553 122 56667788888888888755 7754 7
Q ss_pred ccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeC---C--------cccCCCCCCCCCC---CCCCCccceee
Q 042509 764 LNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVG---D--------EFLGIKSNHSSGP---AIAFPKLKHLK 829 (892)
Q Consensus 764 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~---~--------~~~~~~~n~~~~~---~~~f~~L~~L~ 829 (892)
+++|+.|++++|...... .++.+++|++|++++|.++.++ . +.+..+.|.+... ...+++|+.|.
T Consensus 327 l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 778888888877544333 4567777777777777766552 1 1223333333221 22344555555
Q ss_pred cccccc--------------ccccc---cccccCcccccCcCCccceeeecccccCcC--CCcCCCCCcceE-EEEcCCC
Q 042509 830 FMKLSE--------------WEEWD---FGITRSGKEEITIMPQLNSLEIILCAKLKS--LPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 830 l~~l~~--------------l~~~~---~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~--lp~~l~~l~~L~-L~i~~c~ 889 (892)
+.+..- ++.+. +.+....+..+..+++|+.|++++| .+.. +|..+..+++|+ |++++|.
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc
Confidence 443210 01000 0111112334456677777777777 4443 566667777777 7777763
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=254.69 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=105.5
Q ss_pred cccceEEEEEeCCCCCc-cccccCCCcceEEEecCC--cccc-ChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP--ICEI-PKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~--~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L 600 (892)
++++++|++++|.+..+ |..+.++++|++|+++++ ...+ |..|+++++|++|+|++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 67899999999988776 567888999999999886 3455 67788999999999999998855 7788899999999
Q ss_pred eccCcCCccccchh--hhccccCCeeccccccccccc--ccccCCcCCCcCCceEeccCC
Q 042509 601 EMEDCCNLKRLPQE--IGKLVNLRYLIYNDSYLHYLP--RGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 601 ~L~~~~~~~~lp~~--i~~l~~L~~L~~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 656 (892)
+|++|.....+|.. ++++++|++|+++.|.+..++ ..++++++|++|++++|.+..
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99998855556665 888999999988777777653 458888899988888876643
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.5e-24 Score=256.95 Aligned_cols=252 Identities=21% Similarity=0.193 Sum_probs=184.3
Q ss_pred ccccceEEEEEeCCCC-CccccccCC-CcceEEEecCC-cc-ccChhhcCcCCcceEEcCCCCCC-ccccc-ccCCCCCC
Q 042509 525 SMEKLRHFMLVLGKSV-AFPVSIFKA-RKLRSLLIVGP-IC-EIPKEIENFMYLRFLKLSKAEIV-ELPET-CCELFNLQ 598 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~-~~p~~~~~~-~~Lr~L~l~~~-~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~-i~~L~~L~ 598 (892)
.++++++|++++|.+. .+|..+... ++|++|+++++ +. .+|..++++++|++|++++|.+. .+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 3677888888877765 667666654 78888888776 32 56777888888888888888876 77765 77888888
Q ss_pred EEeccCcCCccccchhhhccc-cCCeecccccccc-cccccccC--CcCCCcCCceEeccCCCccCCCCCCccccccccc
Q 042509 599 TLEMEDCCNLKRLPQEIGKLV-NLRYLIYNDSYLH-YLPRGIER--LTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNH 674 (892)
Q Consensus 599 ~L~L~~~~~~~~lp~~i~~l~-~L~~L~~~~~~l~-~lp~~i~~--L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~ 674 (892)
+|++++|...+.+|..+.+++ +|++|+++.|.+. .+|..+.. +++|++|++..|...+ ..+.....+..|+.|
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L-- 423 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSL-- 423 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCCEE--
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-ccCHHHhcCCCCCEE--
Confidence 888888875557788888777 7888866666554 45666655 7778888887776653 222222333333333
Q ss_pred CCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCC
Q 042509 675 LRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGK 754 (892)
Q Consensus 675 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 754 (892)
.+.+.. .....+..+..+++|+.|+++.|.+. ..++..+..+++|++|++++|.+.
T Consensus 424 -----~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~---------------~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 424 -----HLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLE---------------GEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp -----ECCSSE----EESCCCGGGGGCTTCCEEECCSSCCC---------------SCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -----ECcCCc----ccCcccHHHhcCCCCCEEECCCCccc---------------CcCCHHHcCCCCceEEEecCCccc
Confidence 221110 01112345778899999999999876 345667788899999999999999
Q ss_pred CCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEe
Q 042509 755 AVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 755 ~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~ 803 (892)
+.+|.++..+++|+.|+|++|.+...+|. ++.+++|++|+|++|.++..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 87899999999999999999998866665 89999999999999997744
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=242.92 Aligned_cols=343 Identities=15% Similarity=0.108 Sum_probs=222.8
Q ss_pred cccceEEEEEeCCCCCcc-ccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEec
Q 042509 526 MEKLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEM 602 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 602 (892)
.+++++|++++|.+..++ ..+.++++|++|+++++ +..+ |..|+++++|++|+|++|.++.+|.. .+++|++|++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 478999999999998876 57889999999999986 5555 77899999999999999999999887 8999999999
Q ss_pred cCcCCcc-ccchhhhccccCCeecccccccccccccccCCcCC--CcCCceEecc--CCCccCCCCCCcc----------
Q 042509 603 EDCCNLK-RLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCL--RTLSEFVVSR--SGGKYGSKASNLE---------- 667 (892)
Q Consensus 603 ~~~~~~~-~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~~~~~~~~l~---------- 667 (892)
++|...+ .+|..++++++|++|.+++|.+.. ..+..+++| ++|++..|.. .. ..+.....+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK-EDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS-CCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc-cccccccccccceEEEEecc
Confidence 9998444 478899999999999888887765 356777777 8888888876 22 1111111111
Q ss_pred -------------cccccccCCCceEEeccC----------------------------------------------CCC
Q 042509 668 -------------GLRHLNHLRGFLAIVGLG----------------------------------------------NVK 688 (892)
Q Consensus 668 -------------~L~~L~~L~~~l~i~~l~----------------------------------------------~~~ 688 (892)
.+..|. .+.+.+.. ++.
T Consensus 175 n~~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLE----LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEE----ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred Ccchhhhhhhhhhccccee----eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 111111 11111100 000
Q ss_pred Chhh-------hhhhcc-----cCCCCCCeEEEEeeCCCchhhHhhhhhh---h------ccHHHHhh--hCCCCCCCCe
Q 042509 689 DVDE-------AKNAEL-----EKKKNLFRLELWFNNKEEEEEEESMEEN---Q------ANQGAISE--ALRPPPNLES 745 (892)
Q Consensus 689 ~~~~-------~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~---~------~~~~~~~~--~l~~~~~L~~ 745 (892)
.+.. ..+..+ .++++|+.++++.|.+. .+...+... . -....+.. ....+++|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 0000 000111 22333333333333220 000000000 0 00000000 0156788999
Q ss_pred EEEeeecCCCCCCchhhhccCCcEEEEeccCCCC--cCC-CCCCCCCCCeEEEcceEEEE-eCCcc---------cCCCC
Q 042509 746 LEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCE--IMP-PLGKLPFLESLKIRNMNVKK-VGDEF---------LGIKS 812 (892)
Q Consensus 746 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~~~-~l~~l~~L~~L~L~~~~l~~-~~~~~---------~~~~~ 812 (892)
|++++|.+++..|.++..+++|+.|+|++|.+.. .+| .++.+++|++|++++|.++. ++... +..+.
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999888778888889999999999987764 223 37888999999999998776 55332 23445
Q ss_pred CCCCCC-CCCC-CccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcC-CCCCcceE-EEEcCC
Q 042509 813 NHSSGP-AIAF-PKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQ-LLQRTKLN-LNISLC 888 (892)
Q Consensus 813 n~~~~~-~~~f-~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~-l~~l~~L~-L~i~~c 888 (892)
|.+++. +..+ ++|+.|.+.++ .+..+ +..+..+++|+.|++++| +++.+|.. +..+++|+ |+++++
T Consensus 409 N~l~~~~~~~l~~~L~~L~Ls~N-~l~~i--------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 409 NILTDTIFRCLPPRIKVLDLHSN-KIKSI--------PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp SCCCGGGGGSCCTTCCEEECCSS-CCCCC--------CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcchhhhhcccCCEEECCCC-ccccc--------chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 555432 2233 57777777764 33332 333447899999999999 78899986 77899999 999988
Q ss_pred C
Q 042509 889 P 889 (892)
Q Consensus 889 ~ 889 (892)
|
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 6
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.1e-23 Score=241.16 Aligned_cols=344 Identities=17% Similarity=0.148 Sum_probs=214.8
Q ss_pred cccceEEEEEeCCCCCcc-ccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEec
Q 042509 526 MEKLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEM 602 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 602 (892)
++++++|++++|.+..++ ..+.++++|++|+++++ +..+ |..|+++++|++|+|++|.++.+|.. .+++|++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 478888888888888776 46788888999988876 5555 66788888899999998888888877 7888999999
Q ss_pred cCcCCccc--cchhhhccccCCeecccccccccccccccCCcCC--CcCCceEecc--CCCccCCCCCCccccc------
Q 042509 603 EDCCNLKR--LPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCL--RTLSEFVVSR--SGGKYGSKASNLEGLR------ 670 (892)
Q Consensus 603 ~~~~~~~~--lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~~~~~~~~l~~L~------ 670 (892)
++|. +.. +|..++++++|++|.+++|.+.. ..+..+++| ++|++..|.. .. ..+. .+..+.
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~-~~~~---~l~~l~~~~l~l 201 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKG-GETE---SLQIPNTTVLHL 201 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCS-SSCC---EEEECCEEEEEE
T ss_pred CCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccc-cCcc---cccccCcceEEE
Confidence 8888 444 35788888889988777777654 245555666 8888888766 32 1111 222211
Q ss_pred -----------------ccccCCCceEEeccCCCCChhhhhhhccc---------------------------CCCCCCe
Q 042509 671 -----------------HLNHLRGFLAIVGLGNVKDVDEAKNAELE---------------------------KKKNLFR 706 (892)
Q Consensus 671 -----------------~L~~L~~~l~i~~l~~~~~~~~~~~~~l~---------------------------~~~~L~~ 706 (892)
.+..++ .+.+.........-......+. ..++|++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 111111 1111110000000000000111 1236666
Q ss_pred EEEEeeCCCchhhHhhhh---------------hhh-c-cHHHHhh---------------------hCCCCCCCCeEEE
Q 042509 707 LELWFNNKEEEEEEESME---------------ENQ-A-NQGAISE---------------------ALRPPPNLESLEI 748 (892)
Q Consensus 707 L~L~~~~~~~~~~~~~~~---------------~~~-~-~~~~~~~---------------------~l~~~~~L~~L~L 748 (892)
|+++.|.+.+..|...+. ... . ....+.. ....+++|++|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 777666554221110000 000 0 0000000 0145678888888
Q ss_pred eeecCCCCCCchhhhccCCcEEEEeccCCCCcC---CCCCCCCCCCeEEEcceEEEE-eCCcc---------cCCCCCCC
Q 042509 749 WEYKGKAVFENWIVSLNKLKKLFLINCYNCEIM---PPLGKLPFLESLKIRNMNVKK-VGDEF---------LGIKSNHS 815 (892)
Q Consensus 749 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~---~~l~~l~~L~~L~L~~~~l~~-~~~~~---------~~~~~n~~ 815 (892)
++|.+++..|.++..+++|+.|+|++|.+.... ..++.+++|++|++++|.++. ++... +..+.|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 888887767777888888888888888665432 237788888888888888766 54432 23445555
Q ss_pred CCC-CCCC-CccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcC-CCCCcceE-EEEcCCC
Q 042509 816 SGP-AIAF-PKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQ-LLQRTKLN-LNISLCP 889 (892)
Q Consensus 816 ~~~-~~~f-~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~-l~~l~~L~-L~i~~c~ 889 (892)
++. +..+ ++|+.|.+.+. .+..++ ..+..+++|+.|++++| +++.+|.. +..+++|+ |+++++|
T Consensus 441 ~~~~~~~l~~~L~~L~L~~N-~l~~ip--------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 441 TGSVFRCLPPKVKVLDLHNN-RIMSIP--------KDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CGGGGSSCCTTCSEEECCSS-CCCCCC--------TTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcchhhhhcCcCCEEECCCC-cCcccC--------hhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 432 2234 47777777664 444332 33447899999999999 78899987 78899999 9999886
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.8e-23 Score=246.01 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=76.5
Q ss_pred ccccccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccc-ccccCCCCCC
Q 042509 523 STSMEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQ 598 (892)
Q Consensus 523 ~~~~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~ 598 (892)
+..++++++|++++|.+..+ |..+.++++|++|+++++ +..+ |..|+++.+|++|++++|.++.+| ..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 33467777777777777666 345667777777777765 4444 666777777777777777777665 4577777777
Q ss_pred EEeccCcCCcc-ccchhhhccccCCeecccccccccc
Q 042509 599 TLEMEDCCNLK-RLPQEIGKLVNLRYLIYNDSYLHYL 634 (892)
Q Consensus 599 ~L~L~~~~~~~-~lp~~i~~l~~L~~L~~~~~~l~~l 634 (892)
+|++++|.... .+|..++++++|++|.++.|.+..+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 77777776332 4677777777777776666655544
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2e-23 Score=234.35 Aligned_cols=309 Identities=17% Similarity=0.147 Sum_probs=230.9
Q ss_pred ccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEe
Q 042509 523 STSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLE 601 (892)
Q Consensus 523 ~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 601 (892)
+..++++++|++++|.+..+| .+..+++|++|+++++ +..+| ++.+++|++|++++|.++.+| ++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 345789999999999999887 7899999999999986 56665 899999999999999999886 88999999999
Q ss_pred ccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEE
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAI 681 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 681 (892)
+++|. +..+| ++++++|++|.+++|.+..+| ++++++|++|++..|...... ....+..|+. +.+
T Consensus 113 L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~-------L~l 177 (457)
T 3bz5_A 113 CDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTT-------LDC 177 (457)
T ss_dssp CCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCE-------EEC
T ss_pred CCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCE-------EEC
Confidence 99998 66676 899999999988888888875 889999999999888543311 1222333332 332
Q ss_pred eccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchh
Q 042509 682 VGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 682 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
.+. .+... .+..+++|+.|++++|.+.+ + .+..+++|+.|++++|.+++ +| +
T Consensus 178 s~n-~l~~l------~l~~l~~L~~L~l~~N~l~~----------------~--~l~~l~~L~~L~Ls~N~l~~-ip--~ 229 (457)
T 3bz5_A 178 SFN-KITEL------DVSQNKLLNRLNCDTNNITK----------------L--DLNQNIQLTFLDCSSNKLTE-ID--V 229 (457)
T ss_dssp CSS-CCCCC------CCTTCTTCCEEECCSSCCSC----------------C--CCTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CCC-cccee------ccccCCCCCEEECcCCcCCe----------------e--ccccCCCCCEEECcCCcccc-cC--c
Confidence 221 11211 26678899999999998852 1 36778999999999999998 77 7
Q ss_pred hhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCC--CCCCCccceeecccccccccc
Q 042509 762 VSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGP--AIAFPKLKHLKFMKLSEWEEW 839 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~--~~~f~~L~~L~l~~l~~l~~~ 839 (892)
..+++|+.|++++|.+...+ ++.+++|+.|++++|.++.+. .+.|.+.+. ...+++|+.|.+.++..+..+
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~-----l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID-----LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCC-----CTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred cccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEE-----CCCCccCCcccccccccCCEEECCCCccccee
Confidence 78999999999999776643 567888888888887765433 344443332 235688888888887665555
Q ss_pred ccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 840 DFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 840 ~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
+........-.+..+|+|+.|++++| +++.+| +..+++|+ |+++++.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 43222222223456788888888888 777775 67788888 8887653
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=241.38 Aligned_cols=333 Identities=18% Similarity=0.119 Sum_probs=217.3
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 606 (892)
+++++++|.+..+|..+. ++|++|+++++ +..++ ..|.++++|++|+|++|.++.+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 678999999999997776 89999999986 55665 6799999999999999999976 7789999999999999998
Q ss_pred CccccchhhhccccCCeeccccccccc--ccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 607 NLKRLPQEIGKLVNLRYLIYNDSYLHY--LPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 607 ~~~~lp~~i~~l~~L~~L~~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
++.+|.. .+++|++|++++|.+.. +|..++++++|++|+++.|.+... ....+..| .++ .+.+.+.
T Consensus 81 -l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L----~L~-~L~l~~n 148 (520)
T 2z7x_B 81 -LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHL----NIS-KVLLVLG 148 (520)
T ss_dssp -CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTS----CEE-EEEEEEC
T ss_pred -eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccc----eee-EEEeecc
Confidence 7789887 89999999888888875 578899999999999999887541 12223333 001 1222111
Q ss_pred CC---------CCC--------------------------------h-------------hhhhhhcccCCCCCCeEEEE
Q 042509 685 GN---------VKD--------------------------------V-------------DEAKNAELEKKKNLFRLELW 710 (892)
Q Consensus 685 ~~---------~~~--------------------------------~-------------~~~~~~~l~~~~~L~~L~L~ 710 (892)
.- +.. + .......+..+++|+.|+++
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEE
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccc
Confidence 00 000 0 00001134445555555555
Q ss_pred eeCCCchhhHhhhhh------------hhccHHHHhhhC-----CCCCCCCeEEEeeecCCCCCC-chh-----------
Q 042509 711 FNNKEEEEEEESMEE------------NQANQGAISEAL-----RPPPNLESLEIWEYKGKAVFE-NWI----------- 761 (892)
Q Consensus 711 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~p-~~~----------- 761 (892)
.|.+.+......... .....+.++..+ ..+++|+.+++++|.+ . +| .++
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~-~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G-FPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C-SCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e-cchhhhhcccccCceeE
Confidence 554432110000000 000001122222 3333333344433333 1 23 111
Q ss_pred --------------hhccCCcEEEEeccCCCCcCC-CCCCCCCCCeEEEcceEEEEeCC-----------cccCCCCCCC
Q 042509 762 --------------VSLNKLKKLFLINCYNCEIMP-PLGKLPFLESLKIRNMNVKKVGD-----------EFLGIKSNHS 815 (892)
Q Consensus 762 --------------~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~-----------~~~~~~~n~~ 815 (892)
..+++|+.|+|++|.+....| .++.+++|++|++++|.++.++. +.+..+.|.+
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 467899999999998877544 58999999999999999875431 2345566666
Q ss_pred CC-C----CCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 816 SG-P----AIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 816 ~~-~----~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
.+ . ...+++|+.|.+.++. +... .+..+ .++|+.|++++| +++.+|..+..+++|+ |++++|.
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~-------~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNI-LTDT-------IFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSC-CCGG-------GGGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CcccccchhccCccCCEEECcCCC-CCcc-------hhhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 65 2 1234666666666542 2111 11111 279999999999 8999999888999999 9999884
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.1e-23 Score=245.44 Aligned_cols=129 Identities=10% Similarity=-0.016 Sum_probs=85.6
Q ss_pred cccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 601 (892)
+..+++|++++|.+..+ |..+.++++|++|+++++ +..+ |..|+++.+|++|+|++|.++.+ |..++++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45677777777777666 445677777777777765 4433 56677777777777777777644 55677777777777
Q ss_pred ccCcCCcccc-chhhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccC
Q 042509 602 MEDCCNLKRL-PQEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 602 L~~~~~~~~l-p~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 655 (892)
+++|. +..+ |..++++++|++|.+++|.+..++ ..+..+++|++|++..|...
T Consensus 112 L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred ccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 77776 3333 556677777777766666666542 23334677777776666543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-23 Score=244.40 Aligned_cols=299 Identities=17% Similarity=0.122 Sum_probs=233.2
Q ss_pred cccceEEEEEeCCCCCcccc-ccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPVS-IFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~-~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
..+++.+++.++.+..+|.. +..+++|++|+++++ +..++ ..|+.+.+|++|+|++|.++.+|.. ++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67889999999999988876 567999999999986 55655 4899999999999999999977654 79999999999
Q ss_pred ccCcCCccccchh-hhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCce
Q 042509 602 MEDCCNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFL 679 (892)
Q Consensus 602 L~~~~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 679 (892)
|++|. +..+|.. ++++++|++|.+++|.+..+|. .++++++|++|++++|.+... ....+..|..|
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L------- 197 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA------- 197 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEE-------
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhh-------
Confidence 99998 6777766 5899999999888888887765 589999999999998877641 11223333322
Q ss_pred EEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCc
Q 042509 680 AIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFEN 759 (892)
Q Consensus 680 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~ 759 (892)
.+.+. .+ ..+...++|+.|++++|.+.. ++.. .+++|+.|+|++|.+++ +.
T Consensus 198 ~l~~n-~l--------~~l~~~~~L~~L~ls~n~l~~----------------~~~~--~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 198 NVSYN-LL--------STLAIPIAVEELDASHNSINV----------------VRGP--VNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp ECCSS-CC--------SEEECCTTCSEEECCSSCCCE----------------EECS--CCSCCCEEECCSSCCCC--CG
T ss_pred hcccC-cc--------ccccCCchhheeeccCCcccc----------------cccc--cCCCCCEEECCCCCCCC--Ch
Confidence 22111 01 224455789999999998752 2221 24689999999999987 57
Q ss_pred hhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccc
Q 042509 760 WIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEE 838 (892)
Q Consensus 760 ~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~ 838 (892)
++..+++|+.|+|++|.+...+|. ++.+++|+.|+|++|.++.++.. ...+|+|+.|.+.++ .+..
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~------------~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY------------GQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS------------SSCCTTCCEEECCSS-CCCC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc------------cccCCCCcEEECCCC-CCCc
Confidence 888999999999999988777554 89999999999999998887532 235789999999875 3433
Q ss_pred cccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 839 WDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 839 ~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
++ ..+..+|+|+.|++++| .+..+| +..+++|+ |++++||
T Consensus 316 i~--------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VE--------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CG--------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cC--------cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 32 33457899999999999 688776 56688999 9999986
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.6e-23 Score=233.63 Aligned_cols=310 Identities=21% Similarity=0.246 Sum_probs=159.5
Q ss_pred ccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEecc
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEME 603 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 603 (892)
.++++++|++++|.+..+|. +..+++|++|++.++ +..++. ++++++|++|++++|.++.+|. +.++++|++|+++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 45666666666666666654 666666666666654 334444 6666666666666666666654 6666666666666
Q ss_pred CcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEec
Q 042509 604 DCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVG 683 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 683 (892)
+|. +..+|. ++++++|++|.+++ .+..++. +.++++|++|+++.|.... ...+ ..+..|+ .+.+.+
T Consensus 143 ~n~-l~~~~~-~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~------~~~l---~~l~~L~-~L~l~~ 208 (466)
T 1o6v_A 143 SNT-ISDISA-LSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSD------ISVL---AKLTNLE-SLIATN 208 (466)
T ss_dssp EEE-ECCCGG-GTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCC------CGGG---GGCTTCS-EEECCS
T ss_pred CCc-cCCChh-hccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCC------Chhh---ccCCCCC-EEEecC
Confidence 665 444543 56666666664432 2333332 5566666666666555433 1111 1222222 222221
Q ss_pred cCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhh
Q 042509 684 LGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVS 763 (892)
Q Consensus 684 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~ 763 (892)
.. +... ..+..+++|+.|++++|.+.. ...+..+++|+.|++++|.+.+ ++. +..
T Consensus 209 n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~ 263 (466)
T 1o6v_A 209 NQ-ISDI-----TPLGILTNLDELSLNGNQLKD-----------------IGTLASLTNLTDLDLANNQISN-LAP-LSG 263 (466)
T ss_dssp SC-CCCC-----GGGGGCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCC-CGG-GTT
T ss_pred Cc-cccc-----ccccccCCCCEEECCCCCccc-----------------chhhhcCCCCCEEECCCCcccc-chh-hhc
Confidence 11 0100 113344555555555555431 1223344555555555555554 332 445
Q ss_pred ccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC-------cccCCCCCCCCCC--CCCCCccceeeccccc
Q 042509 764 LNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD-------EFLGIKSNHSSGP--AIAFPKLKHLKFMKLS 834 (892)
Q Consensus 764 l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-------~~~~~~~n~~~~~--~~~f~~L~~L~l~~l~ 834 (892)
+++|+.|++++|.....++ +..+++|+.|++++|.++.++. +.+..+.|.+++. ...+++|+.|.+.++
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN- 341 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-
Confidence 5555555555554433322 5555555555555555443321 1122223333221 124556666666553
Q ss_pred cccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 835 EWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 835 ~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
.+... ..+..+++|+.|++++| .+..++. +..+++|+ |++++|+
T Consensus 342 ~l~~~---------~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 KVSDV---------SSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCC---------GGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCCc---------hhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc
Confidence 22211 23446777888888777 5555554 66677777 7777763
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=8.3e-23 Score=219.37 Aligned_cols=222 Identities=23% Similarity=0.276 Sum_probs=177.4
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
..+++.|++++|.+..+|..+.++++|++|+++++ +..+|..++++.+|++|+|++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 46789999999999999988999999999999886 66889889999999999999999999999999999999999999
Q ss_pred cCCccccchhhhc---------cccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccC
Q 042509 605 CCNLKRLPQEIGK---------LVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHL 675 (892)
Q Consensus 605 ~~~~~~lp~~i~~---------l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L 675 (892)
|...+.+|..++. +++|++|.+++|.+..+|..++++++|++|++.+|.+.. +
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------------------l 221 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------------------L 221 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------------------C
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------------------C
Confidence 8888888887765 888888877777787888888888888888777665432 0
Q ss_pred CCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCC
Q 042509 676 RGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKA 755 (892)
Q Consensus 676 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 755 (892)
...+..+++|+.|++++|.+. ..++..+..+++|+.|+|++|.+.+
T Consensus 222 -------------------~~~l~~l~~L~~L~Ls~n~~~---------------~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 222 -------------------GPAIHHLPKLEELDLRGCTAL---------------RNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -------------------CGGGGGCTTCCEEECTTCTTC---------------CBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred -------------------chhhccCCCCCEEECcCCcch---------------hhhHHHhcCCCCCCEEECCCCCchh
Confidence 012445677888888877664 3345567777888888888887777
Q ss_pred CCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceE
Q 042509 756 VFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMN 799 (892)
Q Consensus 756 ~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 799 (892)
.+|.++..+++|+.|+|++|...+.+|. ++.+++|+.+.+..+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 6788888888888888888776666655 8888888888776544
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.6e-22 Score=217.38 Aligned_cols=282 Identities=21% Similarity=0.224 Sum_probs=220.5
Q ss_pred ccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEe
Q 042509 523 STSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLE 601 (892)
Q Consensus 523 ~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 601 (892)
+..++++++|++++|.+..+|. +..+++|++|+++++ +..+ +.+.++++|++|++++|.++.+|. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 4558899999999999998886 899999999999986 4455 469999999999999999998887 89999999999
Q ss_pred ccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEE
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAI 681 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 681 (892)
+++|.....++. +..+++|++|.++++.+..++. +..+++|++|++..|.... ...+..+.. ++ .+.+
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~------~~~~~~l~~---L~-~L~l 206 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED------ISPLASLTS---LH-YFTA 206 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC------CGGGGGCTT---CC-EEEC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc------cccccCCCc---cc-eeec
Confidence 999976666654 9999999999888888887766 8899999999998887654 111333333 32 3333
Q ss_pred eccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchh
Q 042509 682 VGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 682 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
.+. .+... ..+..+++|+.|++++|.+.. ++. +..+++|++|++++|.++. + ..+
T Consensus 207 ~~n-~l~~~-----~~~~~~~~L~~L~l~~n~l~~----------------~~~-~~~l~~L~~L~l~~n~l~~-~-~~~ 261 (347)
T 4fmz_A 207 YVN-QITDI-----TPVANMTRLNSLKIGNNKITD----------------LSP-LANLSQLTWLEIGTNQISD-I-NAV 261 (347)
T ss_dssp CSS-CCCCC-----GGGGGCTTCCEEECCSSCCCC----------------CGG-GTTCTTCCEEECCSSCCCC-C-GGG
T ss_pred ccC-CCCCC-----chhhcCCcCCEEEccCCccCC----------------Ccc-hhcCCCCCEEECCCCccCC-C-hhH
Confidence 222 11111 126778999999999998852 222 6788999999999999887 5 467
Q ss_pred hhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccccccc
Q 042509 762 VSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDF 841 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~ 841 (892)
..+++|+.|++++|.+.. ++.+..+++|+.|++++|.++..+...+ ..+++|+.|.+.++. +....
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----------~~l~~L~~L~L~~n~-l~~~~- 327 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVI-----------GGLTNLTTLFLSQNH-ITDIR- 327 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHH-----------HTCTTCSEEECCSSS-CCCCG-
T ss_pred hcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHh-----------hccccCCEEEccCCc-ccccc-
Confidence 889999999999997655 4668899999999999998766544333 257899999998863 44333
Q ss_pred ccccCcccccCcCCccceeeecccc
Q 042509 842 GITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 842 ~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
+ +..+|+|+.|++++|+
T Consensus 328 ------~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 ------P--LASLSKMDSADFANQV 344 (347)
T ss_dssp ------G--GGGCTTCSEESSSCC-
T ss_pred ------C--hhhhhccceeehhhhc
Confidence 1 5579999999999994
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.2e-22 Score=236.79 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC-C-CCCCCCCCeEEEcceEEEEeCCcccCCCCCC
Q 042509 737 LRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP-P-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNH 814 (892)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~ 814 (892)
+..+++|++|++++|.+.+..|..+..+++|+.|+|++|......+ . +..+++|++|++++|.++..+...
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------- 444 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL------- 444 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-------
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH-------
Confidence 3444455555555554444334444444555555555444332221 1 444455555555554443322211
Q ss_pred CCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCC-CcCCCCCcceE-EEEcCC
Q 042509 815 SSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSL-PNQLLQRTKLN-LNISLC 888 (892)
Q Consensus 815 ~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~l~~l~~L~-L~i~~c 888 (892)
...+++|+.|.+.+.. +..... .....+..+++|+.|++++| +++.+ |..+..+++|+ |++++|
T Consensus 445 ----~~~l~~L~~L~L~~n~-l~~~~~----~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 445 ----FDGLPALQHLNLQGNH-FPKGNI----QKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ----TTTCTTCCEEECTTCB-CGGGEE----CSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----HhCCCCCCEEECCCCC-CCcccc----ccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence 1234555555555431 111100 01122345566666666666 34433 34455556666 666555
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=233.62 Aligned_cols=128 Identities=23% Similarity=0.186 Sum_probs=77.8
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~ 601 (892)
++++++|++++|.+..++. .+.++++|++|+++++ +..++ ..|+++++|++|+|++|.++.+| ..++++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4556667776666655533 4566666677766664 44443 34666666666666666666554 4566666666666
Q ss_pred ccCcCCccccch-hhhccccCCeeccccccccc--ccccccCCcCCCcCCceEecc
Q 042509 602 MEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYLHY--LPRGIERLTCLRTLSEFVVSR 654 (892)
Q Consensus 602 L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~ 654 (892)
+++|. +..+|. .++++++|++|.+++|.+.. +|..++++++|++|++++|..
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 66665 444443 46666666666555555553 456666666666666665544
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2e-22 Score=240.39 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=87.8
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 601 (892)
+.++++|++++|.+..+|. .+.++++|++|+++++ +..+ |..++++++|++|+|++|.++.+|. .++++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4677777777777776654 4677777777777764 4433 5567777777777777777777776 477777777777
Q ss_pred ccCcCCccccc-hhhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccC
Q 042509 602 MEDCCNLKRLP-QEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 602 L~~~~~~~~lp-~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 655 (892)
+++|. +..+| ..++++++|++|+++.|.+...+ ..++++++|++|++..|...
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 77776 34443 56777777777766666665443 34667777777777666554
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=236.56 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=75.5
Q ss_pred cccccceEEEEEeCCCCCcc-ccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCE
Q 042509 524 TSMEKLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQT 599 (892)
Q Consensus 524 ~~~~~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~ 599 (892)
..++++++|++++|.+..++ ..+.++++|++|+++++ +..+| ..|+++.+|++|++++|.++.+|. .++++++|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 34666777777777666654 34666777777777765 44443 456777777777777777766654 4667777777
Q ss_pred EeccCcCCcc-ccchhhhccccCCeeccccccccccc-ccccCCcCC
Q 042509 600 LEMEDCCNLK-RLPQEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCL 644 (892)
Q Consensus 600 L~L~~~~~~~-~lp~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L 644 (892)
|++++|.... .+|..++++++|++|++++|.+..++ ..++.+++|
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 7777766332 35666777777777766665555443 234444444
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.5e-22 Score=227.43 Aligned_cols=319 Identities=15% Similarity=0.108 Sum_probs=221.2
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCC-cc-cccccCCCCCCEEeccCc
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIV-EL-PETCCELFNLQTLEMEDC 605 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~ 605 (892)
+.+...++.+..+|. + .++|++|+++++ +..+ |..++++++|++|++++|.+. .+ |..+.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 346666677888886 3 389999999986 5555 778999999999999999986 55 567999999999999999
Q ss_pred CCccccchhhhccccCCeeccccccccc-cccc--ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEe
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDSYLHY-LPRG--IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIV 682 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 682 (892)
......|..++++++|++|.+++|.+.. +|.. +.++++|++|++++|.+....+......+..|+.| .+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L-------~L~ 162 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL-------DLT 162 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE-------ECT
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE-------eCC
Confidence 9555568899999999999888887764 4544 88999999999999987652111112333333333 222
Q ss_pred ccCCCCChhhhhhhcccCC--CCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch
Q 042509 683 GLGNVKDVDEAKNAELEKK--KNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENW 760 (892)
Q Consensus 683 ~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 760 (892)
+.. +.. .....+..+ .+|+.|+++.|.+....+. .........+..+++|++|++++|.+.+..|.+
T Consensus 163 ~n~-l~~---~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 163 FNK-VKS---ICEEDLLNFQGKHFTLLRLSSITLQDMNEY-------WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp TCC-BSC---CCTTTSGGGTTCEEEEEECTTCBCTTCSTT-------CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCc-ccc---cChhhhhccccccccccccccCcccccchh-------hccccccccccccceeeeEecCCCcccccchhh
Confidence 111 010 011122222 5788899888876531100 000111223344567888888877765433433
Q ss_pred hhh---------------------------------------ccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEE
Q 042509 761 IVS---------------------------------------LNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNV 800 (892)
Q Consensus 761 ~~~---------------------------------------l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l 800 (892)
+.. .++|+.|+|++|.+...+|. ++.+++|++|+|++|.+
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 322 25788888888877766665 88889999999999988
Q ss_pred EEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCC-CcCCCCCc
Q 042509 801 KKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSL-PNQLLQRT 879 (892)
Q Consensus 801 ~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~l~~l~ 879 (892)
+.++...+ ..+++|+.|.+.+. .+..+ .+..+..+++|+.|++++| .++.+ |..+..++
T Consensus 312 ~~~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 312 NKIDDNAF-----------WGLTHLLKLNLSQN-FLGSI-------DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLP 371 (455)
T ss_dssp CEECTTTT-----------TTCTTCCEEECCSS-CCCEE-------CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred cccChhHh-----------cCcccCCEEECCCC-ccCCc-------ChhHhcCcccCCEEECCCC-cccccChhhccccc
Confidence 87765433 25688888888774 33333 2345668999999999999 67755 67888899
Q ss_pred ceE-EEEcCCC
Q 042509 880 KLN-LNISLCP 889 (892)
Q Consensus 880 ~L~-L~i~~c~ 889 (892)
+|+ |++++|.
T Consensus 372 ~L~~L~L~~N~ 382 (455)
T 3v47_A 372 NLKELALDTNQ 382 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECCCCc
Confidence 999 9999874
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=237.95 Aligned_cols=326 Identities=14% Similarity=0.055 Sum_probs=200.3
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCC-CCcc-cccccCCCCCCEEeccCc
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAE-IVEL-PETCCELFNLQTLEMEDC 605 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~ 605 (892)
+..+.++++++.+|. -.++|++|+++++ +..+ |..|+++.+|++|+|++|. +..+ |..+.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456667778888986 5689999999986 5554 6789999999999999996 5566 778999999999999999
Q ss_pred CCccccchhhhccccCCeeccccccccc-cccc--ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEe
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDSYLHY-LPRG--IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIV 682 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 682 (892)
......|..++++++|++|+++.|.+.. +|.. ++++++|++|+++.|.......+.....+.+|+.| .+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L-------~Ls 156 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-------DFS 156 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE-------EEE
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE-------ECC
Confidence 9556668999999999999888887765 5555 89999999999999988653222223334444433 332
Q ss_pred ccC--CCCChhhh--------------------hhhcccCCC------CCCeEEEEeeCCCchhhHhhhhhhhc------
Q 042509 683 GLG--NVKDVDEA--------------------KNAELEKKK------NLFRLELWFNNKEEEEEEESMEENQA------ 728 (892)
Q Consensus 683 ~l~--~~~~~~~~--------------------~~~~l~~~~------~L~~L~L~~~~~~~~~~~~~~~~~~~------ 728 (892)
+.. .+...... ....+..+. +|+.|++++|.+....+.........
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 211 11000000 001111111 25555555554432111100000000
Q ss_pred ---------------cHHHHhhhCCC--CCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCC
Q 042509 729 ---------------NQGAISEALRP--PPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFL 790 (892)
Q Consensus 729 ---------------~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L 790 (892)
........+.. +++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+. ++.+++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 00000001111 25677777777766664455666677777777777766555443 6667777
Q ss_pred CeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcC
Q 042509 791 ESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKS 870 (892)
Q Consensus 791 ~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~ 870 (892)
++|+|++|.++.+....+ ..+++|+.|.+.+. .+..+ .+..+..+++|+.|++++| .++.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~L~~N-~i~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~ 376 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNF-----------YGLPKVAYIDLQKN-HIAII-------QDQTFKFLEKLQTLDLRDN-ALTT 376 (844)
T ss_dssp CEEEEESCCCSCCCSCSC-----------SSCTTCCEEECCSC-CCCCC-------CSSCSCSCCCCCEEEEETC-CSCC
T ss_pred CEEECCCCCCCccCHHHh-----------cCCCCCCEEECCCC-CCCcc-------ChhhhcCCCCCCEEECCCC-CCCc
Confidence 777777776654433222 25567777777653 33222 2334556788888888888 6666
Q ss_pred CCcCCCCCcceE-EEEcCCC
Q 042509 871 LPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 871 lp~~l~~l~~L~-L~i~~c~ 889 (892)
++. +++|+ |++++|+
T Consensus 377 i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 377 IHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CSS----CCSCSEEEEESCC
T ss_pred ccC----CCCcchhccCCCC
Confidence 554 56666 6666653
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=7.2e-22 Score=213.27 Aligned_cols=293 Identities=17% Similarity=0.135 Sum_probs=194.8
Q ss_pred ccceEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEecc
Q 042509 527 EKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEME 603 (892)
Q Consensus 527 ~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~ 603 (892)
.+++.++++++.+..+|..+. ++|++|+++++ +..+ |..++++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 467888888888888886663 68899999875 5555 45788899999999999998866 6778889999999999
Q ss_pred CcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCC-ccCCCCCCcccccccccCCCceEE
Q 042509 604 DCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGG-KYGSKASNLEGLRHLNHLRGFLAI 681 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~~L~~~l~i 681 (892)
+|. +..+|..+. ++|++|.+++|.+..+|.. +.++++|++|++.+|..... ..+.....+ .|+.|.--.
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~----- 181 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE----- 181 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-----
T ss_pred CCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-----
Confidence 887 678887665 7899998888888888765 78889999998888876421 111112222 333331100
Q ss_pred eccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchh
Q 042509 682 VGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 682 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
..+..+. ..+ .++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+..|.++
T Consensus 182 n~l~~l~-------~~~--~~~L~~L~l~~n~i~~---------------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 182 AKLTGIP-------KDL--PETLNELHLDHNKIQA---------------IELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp SBCSSCC-------SSS--CSSCSCCBCCSSCCCC---------------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCccC-------ccc--cCCCCEEECCCCcCCc---------------cCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 0111111 111 2678888888887752 233567778889999999988888445578
Q ss_pred hhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccccccc
Q 042509 762 VSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDF 841 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~ 841 (892)
..+++|+.|+|++|.+...++.++.+++|++|++++|.++.++...+.... ....+++|+.|.+.+.+ +..+.
T Consensus 238 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N~-~~~~~- 310 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----FGVKRAYYNGISLFNNP-VPYWE- 310 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----CCSSSCCBSEEECCSSS-SCGGG-
T ss_pred hCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccc-----cccccccccceEeecCc-ccccc-
Confidence 888899999999887775555588888999999998888877655443110 01124556666665532 22111
Q ss_pred ccccCcccccCcCCccceeeeccc
Q 042509 842 GITRSGKEEITIMPQLNSLEIILC 865 (892)
Q Consensus 842 ~~~~~~~~~~~~lp~L~~L~i~~c 865 (892)
..+..+..+++|+.|++.+|
T Consensus 311 ----~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 311 ----VQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ----SCGGGGTTBCCSTTEEC---
T ss_pred ----cCcccccccchhhhhhcccc
Confidence 01223445566666666555
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-22 Score=221.08 Aligned_cols=283 Identities=17% Similarity=0.150 Sum_probs=220.2
Q ss_pred cCCCcceEEEecCC-ccccChh-hcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccchhhhccccCCe
Q 042509 547 FKARKLRSLLIVGP-ICEIPKE-IENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRY 623 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 623 (892)
..++++++|++.++ +..+|.. +.++++|++|+|++|.++.+|. .+..+++|++|++++|......|..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999986 6778876 6889999999999999997765 7999999999999999844444567899999999
Q ss_pred eccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCC
Q 042509 624 LIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKK 702 (892)
Q Consensus 624 L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 702 (892)
|.+++|.+..+|.+ +.++++|++|++++|.... ..+.....+..|+.| .+.+. .+.. ..+..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L-------~l~~n-~l~~------~~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNL-------QLSSN-RLTH------VDLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEE-------ECCSS-CCSB------CCGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEE-------ECCCC-cCCc------ccccccc
Confidence 99889999999987 4899999999999987754 222223334444433 22211 1111 1355678
Q ss_pred CCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC
Q 042509 703 NLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP 782 (892)
Q Consensus 703 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~ 782 (892)
+|+.|+++.|.+.. +..+++|+.|++++|.+.. +|.. .+++|+.|+|++|.+.. ++
T Consensus 187 ~L~~L~l~~n~l~~--------------------~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~-~~ 242 (390)
T 3o6n_A 187 SLFHANVSYNLLST--------------------LAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTD-TA 242 (390)
T ss_dssp TCSEEECCSSCCSE--------------------EECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCC-CG
T ss_pred ccceeecccccccc--------------------cCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCcc-cH
Confidence 99999999887642 3456789999999999887 6554 35799999999997655 46
Q ss_pred CCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeee
Q 042509 783 PLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEI 862 (892)
Q Consensus 783 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i 862 (892)
.++.+++|++|++++|.++.+....+ ..+++|+.|.+.+. .+..++ .....+|+|+.|++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~-----------~~l~~L~~L~L~~n-~l~~~~--------~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPF-----------VKMQRLERLYISNN-RLVALN--------LYGQPIPTLKVLDL 302 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGG-----------TTCSSCCEEECCSS-CCCEEE--------CSSSCCTTCCEEEC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHc-----------cccccCCEEECCCC-cCcccC--------cccCCCCCCCEEEC
Confidence 78999999999999999887754443 25788999998874 444443 23357899999999
Q ss_pred cccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 863 ILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 863 ~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
++| .++.+|..+..+++|+ |++++|+
T Consensus 303 ~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 303 SHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCC-cceecCccccccCcCCEEECCCCc
Confidence 999 7899998888899999 9999886
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=221.19 Aligned_cols=274 Identities=19% Similarity=0.160 Sum_probs=212.8
Q ss_pred CccccccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-ccccChh-hcCcCCcceEEcCCCCCCcc-cccccCCCCC
Q 042509 522 ESTSMEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEIPKE-IENFMYLRFLKLSKAEIVEL-PETCCELFNL 597 (892)
Q Consensus 522 ~~~~~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~lp~~-i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L 597 (892)
.+..+++++.|++++|.+..+ |..+.++++|++|+++++ +..+|.. ++++++|++|+|++|.+..+ |..+.++++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 345588999999999998877 667899999999999986 6777764 78999999999999999865 5679999999
Q ss_pred CEEeccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCC
Q 042509 598 QTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLR 676 (892)
Q Consensus 598 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~ 676 (892)
++|++++|......|..+.++++|++|.++.|.+..+|.. +.++++|+.|++..|.... ..+.....+. .|+
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~------~L~ 203 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLY------RLK 203 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCT------TCC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCc------ccc
Confidence 9999999985555577899999999998888888888764 8899999999999887654 2222222232 333
Q ss_pred CceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCC
Q 042509 677 GFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAV 756 (892)
Q Consensus 677 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 756 (892)
.+.+.+....... ........+|+.|++++|.+.. .....+..+++|+.|+|++|.+...
T Consensus 204 -~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 204 -VLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTA---------------VPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp -EEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCS---------------CCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred -eeeCCCCcccccc----CcccccCccccEEECcCCcccc---------------cCHHHhcCccccCeeECCCCcCCcc
Confidence 4455443332221 1222334589999999998852 1123567789999999999999884
Q ss_pred CCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccc
Q 042509 757 FENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKL 833 (892)
Q Consensus 757 ~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l 833 (892)
.+..+..+++|+.|+|++|.+....+. +..+++|++|+|++|.++.++...+. .+++|+.|.+.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----------~l~~L~~L~l~~N 330 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH-----------SVGNLETLILDSN 330 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS-----------CGGGCCEEECCSS
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC-----------CCcccCEEEccCC
Confidence 556678999999999999988776554 89999999999999998887765442 5688888888763
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=7.2e-22 Score=221.78 Aligned_cols=268 Identities=17% Similarity=0.119 Sum_probs=201.7
Q ss_pred cccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccC
Q 042509 543 PVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNL 621 (892)
Q Consensus 543 p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 621 (892)
+..+.++++|++|+++++ +..+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence 346788999999999986 66676 6999999999999999999987 8999999999999998 66675 8999999
Q ss_pred CeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCC
Q 042509 622 RYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKK 701 (892)
Q Consensus 622 ~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 701 (892)
++|++++|.+..+| ++++++|++|++..|.+... .+..+.. |+ .+.+.....+... .+..+
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-------~l~~l~~---L~-~L~l~~n~~~~~~------~~~~l 169 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-------DVSHNTQ---LT-ELDCHLNKKITKL------DVTPQ 169 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-------CCTTCTT---CC-EEECTTCSCCCCC------CCTTC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-------ccccCCc---CC-EEECCCCCccccc------ccccC
Confidence 99988899998886 89999999999998887651 1222222 22 3333333222221 36778
Q ss_pred CCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcC
Q 042509 702 KNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIM 781 (892)
Q Consensus 702 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~ 781 (892)
++|+.|++++|.+.+ ++ +..+++|+.|++++|.+++ ++ +..+++|+.|+|++|.+.. +
T Consensus 170 ~~L~~L~ls~n~l~~----------------l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE----------------LD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp TTCCEEECCSSCCCC----------------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-C
T ss_pred CcCCEEECCCCccce----------------ec--cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-c
Confidence 999999999998852 22 6778999999999999988 54 7789999999999998776 4
Q ss_pred CCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccccccccccc-CcccccCcCCcccee
Q 042509 782 PPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITR-SGKEEITIMPQLNSL 860 (892)
Q Consensus 782 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~-~~~~~~~~lp~L~~L 860 (892)
| ++.+++|++|++++|.++.++ ...|++|+.|.+.. .+++.+..+... ........+++|+.|
T Consensus 228 p-~~~l~~L~~L~l~~N~l~~~~--------------~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~~~~~~~l~~L~~L 291 (457)
T 3bz5_A 228 D-VTPLTQLTYFDCSVNPLTELD--------------VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQAEGCRKIKEL 291 (457)
T ss_dssp C-CTTCTTCSEEECCSSCCSCCC--------------CTTCTTCCEEECTT-CCCSCCCCTTCTTCCEEECTTCTTCCCC
T ss_pred C-ccccCCCCEEEeeCCcCCCcC--------------HHHCCCCCEEeccC-CCCCEEECCCCccCCcccccccccCCEE
Confidence 5 889999999999999987654 23566666655433 233332211000 011113468999999
Q ss_pred eecccccCcCCCc
Q 042509 861 EIILCAKLKSLPN 873 (892)
Q Consensus 861 ~i~~c~~L~~lp~ 873 (892)
++++|+.+..+|.
T Consensus 292 ~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 292 DVTHNTQLYLLDC 304 (457)
T ss_dssp CCTTCTTCCEEEC
T ss_pred ECCCCcccceecc
Confidence 9999987777764
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.2e-21 Score=219.78 Aligned_cols=299 Identities=19% Similarity=0.202 Sum_probs=173.2
Q ss_pred ccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEe
Q 042509 523 STSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLE 601 (892)
Q Consensus 523 ~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 601 (892)
+..++++++|.+++|.+..++. +.++++|++|+++++ +..++. ++++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEee
Confidence 4567899999999999988886 999999999999986 556655 8999999999999999988764 77777777777
Q ss_pred ccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEE
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAI 681 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 681 (892)
+++ . ...++. +.++++|++|.+++|.+..++ .+.++++|++|++..|...... + ...+..|+ .+.+
T Consensus 163 l~~-~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~-------~L~l 228 (466)
T 1o6v_A 163 FGN-Q-VTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-P--LGILTNLD-------ELSL 228 (466)
T ss_dssp EEE-S-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-G--GGGCTTCC-------EEEC
T ss_pred cCC-c-ccCchh-hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccc-c--ccccCCCC-------EEEC
Confidence 763 2 334433 777777777766666666654 3667777777777766554311 0 11112222 2222
Q ss_pred eccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchh
Q 042509 682 VGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 682 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
.+.. +... ..+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+.+ +|. +
T Consensus 229 ~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~----------------~~-~~~~l~~L~~L~l~~n~l~~-~~~-~ 283 (466)
T 1o6v_A 229 NGNQ-LKDI-----GTLASLTNLTDLDLANNQISN----------------LA-PLSGLTKLTELKLGANQISN-ISP-L 283 (466)
T ss_dssp CSSC-CCCC-----GGGGGCTTCSEEECCSSCCCC----------------CG-GGTTCTTCSEEECCSSCCCC-CGG-G
T ss_pred CCCC-cccc-----hhhhcCCCCCEEECCCCcccc----------------ch-hhhcCCCCCEEECCCCccCc-ccc-c
Confidence 2111 1111 123444555555555555431 00 13334444444444444444 332 3
Q ss_pred hhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC-------cccCCCCCCCCCC--CCCCCccceeeccc
Q 042509 762 VSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD-------EFLGIKSNHSSGP--AIAFPKLKHLKFMK 832 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-------~~~~~~~n~~~~~--~~~f~~L~~L~l~~ 832 (892)
..+++|+.|+|++|.....+ .++.+++|+.|++++|.++.++. +.+..++|.+++. ...+++|+.|.+.+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 362 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred cCCCccCeEEcCCCcccCch-hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCC
Confidence 34444444444444332221 13444444444444444333221 1112223333221 23567888888876
Q ss_pred cccccccccccccCcccccCcCCccceeeecccccCcCCCcCC
Q 042509 833 LSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQL 875 (892)
Q Consensus 833 l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l 875 (892)
+ .+..+. + +..+++|+.|++++| .++.+|...
T Consensus 363 n-~l~~~~-------~--~~~l~~L~~L~l~~n-~~~~~p~~~ 394 (466)
T 1o6v_A 363 N-QISDLT-------P--LANLTRITQLGLNDQ-AWTNAPVNY 394 (466)
T ss_dssp S-CCCBCG-------G--GTTCTTCCEEECCCE-EEECCCBCC
T ss_pred C-ccCccc-------h--hhcCCCCCEEeccCC-cccCCchhh
Confidence 5 333333 2 568999999999999 566666543
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.9e-21 Score=225.88 Aligned_cols=347 Identities=16% Similarity=0.107 Sum_probs=229.1
Q ss_pred cccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
.+++++|++++|.+..+ |..+.++++|++|+++++ +..++ ..|+++.+|++|+|++|.++.+|.. ++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 57899999999998876 457889999999999986 55554 6789999999999999999987765 99999999999
Q ss_pred ccCcCCcc-ccchhhhccccCCeecccccc-ccccc-ccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCc
Q 042509 602 MEDCCNLK-RLPQEIGKLVNLRYLIYNDSY-LHYLP-RGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGF 678 (892)
Q Consensus 602 L~~~~~~~-~lp~~i~~l~~L~~L~~~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 678 (892)
+++|.... ..|..++++++|++|.+++|. +..+| ..+.++++|++|++..|.... ..+. .+..+..|. .
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~---~l~~l~~L~----~ 176 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQ---SLKSIRDIH----H 176 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTT---TTTTCSEEE----E
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChh---hhhccccCc----e
Confidence 99998433 457789999999999777665 67776 468999999999999988754 2222 222333332 3
Q ss_pred eEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchh----hHh---------hhhhhh---ccHHHHhhh------
Q 042509 679 LAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEE----EEE---------SMEENQ---ANQGAISEA------ 736 (892)
Q Consensus 679 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~----~~~---------~~~~~~---~~~~~~~~~------ 736 (892)
+.+..... .... ...+..+++|+.|++++|.+.+.. +.. .+..+. .....+...
T Consensus 177 L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 177 LTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred EecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 33332211 1111 122356799999999999886420 000 000000 000000000
Q ss_pred -----------------------------------------------------CCCCCCCCeEEEeeecCCCCCCchhh-
Q 042509 737 -----------------------------------------------------LRPPPNLESLEIWEYKGKAVFENWIV- 762 (892)
Q Consensus 737 -----------------------------------------------------l~~~~~L~~L~L~~~~~~~~~p~~~~- 762 (892)
....++|+.|++++|.+.. +|.++.
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHh
Confidence 0012467778888887776 787764
Q ss_pred hccCCcEEEEeccCCCCcC----CCCCCCCCCCeEEEcceEEEEeCC-----------cccCCCCCCCCCCCC---CCCc
Q 042509 763 SLNKLKKLFLINCYNCEIM----PPLGKLPFLESLKIRNMNVKKVGD-----------EFLGIKSNHSSGPAI---AFPK 824 (892)
Q Consensus 763 ~l~~L~~L~L~~~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~~-----------~~~~~~~n~~~~~~~---~f~~ 824 (892)
.+++|+.|+|++|.+.... ..++.+++|++|++++|.++.++. +.+..+.|.++..+. .+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 7889999999988766543 236778888888888888765431 234455666654332 3456
Q ss_pred cceeecccccccccccc-----------ccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEEcCCC
Q 042509 825 LKHLKFMKLSEWEEWDF-----------GITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLCP 889 (892)
Q Consensus 825 L~~L~l~~l~~l~~~~~-----------~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c~ 889 (892)
|+.|.+.+. .+..++. +... .......+|+|+.|++++| +++.+|. ...+++|+ |++++|.
T Consensus 412 L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 412 MRFLNLSST-GIRVVKTCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQ 484 (549)
T ss_dssp CCEEECTTS-CCSCCCTTSCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSC
T ss_pred ccEEECCCC-CcccccchhcCCceEEECCCCC-hhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCc
Confidence 666666553 1222110 0000 0111236889999999999 7889987 45689999 9998874
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.4e-21 Score=209.74 Aligned_cols=183 Identities=24% Similarity=0.284 Sum_probs=119.8
Q ss_pred CCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceE
Q 042509 572 MYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFV 651 (892)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~ 651 (892)
.++++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|.+..+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 45556666666666666555556666666666555 33556556666666666555555555666666666666666665
Q ss_pred eccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHH
Q 042509 652 VSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQG 731 (892)
Q Consensus 652 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 731 (892)
|...... |. .+ .... + ...+..+++|+.|++++|.+.
T Consensus 160 n~~~~~~-p~---~~---~~~~-~-------------------~~~~~~l~~L~~L~L~~n~l~---------------- 196 (328)
T 4fcg_A 160 CPELTEL-PE---PL---ASTD-A-------------------SGEHQGLVNLQSLRLEWTGIR---------------- 196 (328)
T ss_dssp ETTCCCC-CS---CS---EEEC---------------------CCCEEESTTCCEEEEEEECCC----------------
T ss_pred CCCcccc-Ch---hH---hhcc-c-------------------hhhhccCCCCCEEECcCCCcC----------------
Confidence 5443211 00 00 0000 0 012456788999999998873
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceE
Q 042509 732 AISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMN 799 (892)
Q Consensus 732 ~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 799 (892)
.++..+..+++|++|++++|.+.+ +|..+..+++|+.|+|++|.....+|. ++.+++|++|+|++|.
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 355667778899999999999887 888888889999999998877766665 8888888888888876
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=3.2e-22 Score=213.52 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=165.9
Q ss_pred ccceEEEEEeCCCC---CccccccCCCcceEEEecC--Ccc-ccChhhcCcCCcceEEcCCCCCC-cccccccCCCCCCE
Q 042509 527 EKLRHFMLVLGKSV---AFPVSIFKARKLRSLLIVG--PIC-EIPKEIENFMYLRFLKLSKAEIV-ELPETCCELFNLQT 599 (892)
Q Consensus 527 ~~lr~L~l~~~~~~---~~p~~~~~~~~Lr~L~l~~--~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 599 (892)
.++++|+++++.+. .+|..+.++++|++|++++ ++. .+|..++++++|++|+|++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999999987 5888999999999999983 444 68999999999999999999998 89999999999999
Q ss_pred EeccCcCCccccchhhhccccCCeecccccccc-cccccccCCc-CCCcCCceEeccCCCccCCCCCCcccccccccCCC
Q 042509 600 LEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLH-YLPRGIERLT-CLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRG 677 (892)
Q Consensus 600 L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 677 (892)
|++++|...+.+|..+.++++|++|.+++|.+. .+|..+++++ +|++|+++.|.+... .+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~----------------- 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IP----------------- 191 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CC-----------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CC-----------------
Confidence 999999965689999999999999988888887 8899999998 999999887765421 11
Q ss_pred ceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 042509 678 FLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVF 757 (892)
Q Consensus 678 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 757 (892)
..+..++ |+.|++++|.+. ...+..+..+++|+.|++++|.+++ .
T Consensus 192 ------------------~~~~~l~-L~~L~Ls~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~~-~ 236 (313)
T 1ogq_A 192 ------------------PTFANLN-LAFVDLSRNMLE---------------GDASVLFGSDKNTQKIHLAKNSLAF-D 236 (313)
T ss_dssp ------------------GGGGGCC-CSEEECCSSEEE---------------ECCGGGCCTTSCCSEEECCSSEECC-B
T ss_pred ------------------hHHhCCc-ccEEECcCCccc---------------CcCCHHHhcCCCCCEEECCCCceee-e
Confidence 1122223 666666665543 2234455556666666666666665 3
Q ss_pred CchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEE
Q 042509 758 ENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 758 p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~ 801 (892)
+..+..+++|++|+|++|.+...+|. ++.+++|++|+|++|.++
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 33355566666666666665533333 666666666666666655
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.2e-21 Score=231.46 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=69.7
Q ss_pred EEEEEeCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcCC
Q 042509 531 HFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCCN 607 (892)
Q Consensus 531 ~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 607 (892)
.++.+++.+..+|..+. +++++|+++++ +..+|. .|+++++|++|+|++|.++.+ |..++++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~- 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE- 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-
Confidence 34445555555554443 56666666654 444443 356666666666666666544 4445666666666666665
Q ss_pred ccccch-hhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccC
Q 042509 608 LKRLPQ-EIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 608 ~~~lp~-~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 655 (892)
+..+|. .++++++|++|.+++|.+..+| ..++++++|++|+++.|...
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 445554 3666666666655555555554 33566666666666666544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.2e-21 Score=205.81 Aligned_cols=293 Identities=16% Similarity=0.166 Sum_probs=161.5
Q ss_pred cceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccC
Q 042509 528 KLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMED 604 (892)
Q Consensus 528 ~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 604 (892)
+++.++++.+.+..+|..+. ++|++|+++++ +..++. .++++++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45555555555555554432 45666666654 444443 456666666666666666644 55566666666666666
Q ss_pred cCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCC-ccCCCCCCcccccccccCCCceEEe
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGG-KYGSKASNLEGLRHLNHLRGFLAIV 682 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~~L~~~l~i~ 682 (892)
|. ++.+|..+. ++|++|.+++|.+..++.. +.++++|++|++..|..... ..+ ..+..+..|. .+.+.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~~L~----~L~l~ 179 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLS----YIRIA 179 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT---TGGGGCTTCC----EEECC
T ss_pred Cc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh---hhccCCCCcC----EEECC
Confidence 65 455555443 5666665555555555433 55666666666655544310 001 1111111111 11111
Q ss_pred ccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh
Q 042509 683 GLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV 762 (892)
Q Consensus 683 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 762 (892)
+.. +... +..+ .++|+.|++++|.+.+ ..+..+..+++|++|++++|.+.+..|.++.
T Consensus 180 ~n~-l~~l----~~~~--~~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 180 DTN-ITTI----PQGL--PPSLTELHLDGNKITK---------------VDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp SSC-CCSC----CSSC--CTTCSEEECTTSCCCE---------------ECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CCc-cccC----Cccc--cccCCEEECCCCcCCc---------------cCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 100 0000 0011 1678888888887652 2345567778888888888888774455777
Q ss_pred hccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccc
Q 042509 763 SLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFG 842 (892)
Q Consensus 763 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~ 842 (892)
.+++|+.|+|++|.+...+..+..+++|++|++++|.++.++...+.... ....++.|+.|.+.+. .+..|.
T Consensus 238 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-----~~~~~~~l~~l~l~~N-~~~~~~-- 309 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG-----YNTKKASYSGVSLFSN-PVQYWE-- 309 (330)
T ss_dssp GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-----CCTTSCCCSEEECCSS-SSCGGG--
T ss_pred CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcc-----cccccccccceEeecC-cccccc--
Confidence 88888888888887776555688888888888888888777655443110 0112455666666543 222222
Q ss_pred cccCcccccCcCCccceeeeccc
Q 042509 843 ITRSGKEEITIMPQLNSLEIILC 865 (892)
Q Consensus 843 ~~~~~~~~~~~lp~L~~L~i~~c 865 (892)
..+..+..+++|+.+++++|
T Consensus 310 ---i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 ---IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ---SCGGGGTTCCCGGGEEC---
T ss_pred ---cCccccccccceeEEEeccc
Confidence 02233445666666666655
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.2e-22 Score=213.58 Aligned_cols=252 Identities=17% Similarity=0.118 Sum_probs=199.8
Q ss_pred CcceEEEecCC-cc---ccChhhcCcCCcceEEcCC-CCCC-cccccccCCCCCCEEeccCcCCccccchhhhccccCCe
Q 042509 550 RKLRSLLIVGP-IC---EIPKEIENFMYLRFLKLSK-AEIV-ELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRY 623 (892)
Q Consensus 550 ~~Lr~L~l~~~-~~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 623 (892)
.+++.|+++++ +. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|...+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999985 44 5899999999999999995 7776 88999999999999999999965689999999999999
Q ss_pred ecccccccc-cccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCC
Q 042509 624 LIYNDSYLH-YLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKK 702 (892)
Q Consensus 624 L~~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 702 (892)
|++++|.+. .+|..+.++++|++|++..|.+.+ .+ +..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------------------~~---------------p~~l~~l~ 173 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG---------------------AI---------------PDSYGSFS 173 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE---------------------EC---------------CGGGGCCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC---------------------cC---------------CHHHhhhh
Confidence 988888887 788889999999999988775432 00 02344455
Q ss_pred -CCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcC
Q 042509 703 -NLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIM 781 (892)
Q Consensus 703 -~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~ 781 (892)
+|+.|+++.|.+. ...+..+..++ |+.|++++|.+.+..|..+..+++|+.|+|++|.+...+
T Consensus 174 ~~L~~L~L~~N~l~---------------~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 174 KLFTSMTISRNRLT---------------GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp TTCCEEECCSSEEE---------------EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred hcCcEEECcCCeee---------------ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 8999999988775 23445555555 999999999998767888889999999999999888777
Q ss_pred CCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceee
Q 042509 782 PPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLE 861 (892)
Q Consensus 782 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~ 861 (892)
+.+..+++|++|+|++|.++...+..+ ..+++|+.|.+.+. .+... .+.. ..+++|+.|+
T Consensus 238 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----------~~l~~L~~L~Ls~N-~l~~~-------ip~~-~~l~~L~~l~ 297 (313)
T 1ogq_A 238 GKVGLSKNLNGLDLRNNRIYGTLPQGL-----------TQLKFLHSLNVSFN-NLCGE-------IPQG-GNLQRFDVSA 297 (313)
T ss_dssp GGCCCCTTCCEEECCSSCCEECCCGGG-----------GGCTTCCEEECCSS-EEEEE-------CCCS-TTGGGSCGGG
T ss_pred CcccccCCCCEEECcCCcccCcCChHH-----------hcCcCCCEEECcCC-ccccc-------CCCC-ccccccChHH
Confidence 778899999999999999875433322 25678888888774 23211 2222 5789999999
Q ss_pred ecccccCcCCCc
Q 042509 862 IILCAKLKSLPN 873 (892)
Q Consensus 862 i~~c~~L~~lp~ 873 (892)
+.+|+.+...|.
T Consensus 298 l~~N~~lc~~p~ 309 (313)
T 1ogq_A 298 YANNKCLCGSPL 309 (313)
T ss_dssp TCSSSEEESTTS
T ss_pred hcCCCCccCCCC
Confidence 999987776553
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-21 Score=227.66 Aligned_cols=280 Identities=16% Similarity=0.120 Sum_probs=211.6
Q ss_pred ccccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEE
Q 042509 525 SMEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTL 600 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 600 (892)
.+++++.|++++|.+..++. .+..+++|++|+++++ +..+|. .|+++++|++|+|++|.++.+|.. ++++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 46889999999999988764 7889999999999986 556654 579999999999999999999887 5899999999
Q ss_pred eccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceE
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLA 680 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 680 (892)
++++|......|..++++++|++|.+++|.+..+| ++.+++|+.|++..|.... ......|+.| .
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L-------~ 217 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST------LAIPIAVEEL-------D 217 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE------EECCTTCSEE-------E
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc------ccCCchhhee-------e
Confidence 99999855555667999999999988888888775 5678899999988776543 1122233333 2
Q ss_pred EeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch
Q 042509 681 IVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENW 760 (892)
Q Consensus 681 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 760 (892)
+.+.. +... .-...++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|..
T Consensus 218 ls~n~-l~~~------~~~~~~~L~~L~L~~n~l~~-----------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 218 ASHNS-INVV------RGPVNVELTILKLQHNNLTD-----------------TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CCSSC-CCEE------ECSCCSCCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccCCc-cccc------ccccCCCCCEEECCCCCCCC-----------------ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 11110 1000 00113689999999988752 245667889999999999988856888
Q ss_pred hhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccc
Q 042509 761 IVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWD 840 (892)
Q Consensus 761 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~ 840 (892)
+..+++|+.|+|++|.+...++.++.+|+|+.|+|++|.++.++..+ ..+++|+.|.+.++ .+..+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~------------~~l~~L~~L~L~~N-~l~~~- 339 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ------------PQFDRLENLYLDHN-SIVTL- 339 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH------------HHHTTCSEEECCSS-CCCCC-
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc------------ccCCCCCEEECCCC-CCCCc-
Confidence 88999999999999987776656778999999999999877665332 25678888888774 23222
Q ss_pred cccccCcccccCcCCccceeeecccc
Q 042509 841 FGITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 841 ~~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
.+..+|+|+.|++++|+
T Consensus 340 ---------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 ---------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---------CCCTTCCCSEEECCSSC
T ss_pred ---------ChhhcCCCCEEEeeCCC
Confidence 24468888889888875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.2e-21 Score=209.31 Aligned_cols=293 Identities=18% Similarity=0.140 Sum_probs=207.8
Q ss_pred CcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccchhhhccccCCeeccc
Q 042509 550 RKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYN 627 (892)
Q Consensus 550 ~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~ 627 (892)
.++++++++++ +..+|..+. ++|++|++++|.++.+|. .++++++|++|++++|......|..++++++|++|.++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 47899999874 677887664 689999999999998876 69999999999999998544558899999999999999
Q ss_pred ccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 628 DSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 628 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
+|.+..+|..+. ++|++|++..|.... ..+.....+..|+.| .+.+.. +.. .......+..+++|+.|
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L-------~l~~n~-l~~-~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVV-------ELGTNP-LKS-SGIENGAFQGMKKLSYI 176 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEE-------ECCSSC-CCG-GGBCTTGGGGCTTCCEE
T ss_pred CCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEE-------ECCCCc-CCc-cCcChhhccCCCCcCEE
Confidence 999999998775 799999998887654 111112223333332 222211 110 01122457788999999
Q ss_pred EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC-CCCC
Q 042509 708 ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP-PLGK 786 (892)
Q Consensus 708 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~ 786 (892)
++++|.+.. ++..+ .++|++|++++|.+.+..|..+..+++|+.|+|++|.+....+ .+..
T Consensus 177 ~l~~n~l~~----------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 177 RIADTNITT----------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp ECCSSCCCS----------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred ECCCCcccc----------------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 999988742 33333 3789999999999988557888899999999999998777666 4888
Q ss_pred CCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccc
Q 042509 787 LPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 787 l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
+++|++|+|++|.++.++..+ ..+++|+.|.+.+. .+..++...-. ........+.|+.|++.+||
T Consensus 239 l~~L~~L~L~~N~l~~lp~~l------------~~l~~L~~L~l~~N-~i~~~~~~~f~-~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPGGL------------ADHKYIQVVYLHNN-NISAIGSNDFC-PPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp STTCCEEECCSSCCSSCCTTT------------TTCSSCCEEECCSS-CCCCCCTTSSS-CSSCCTTSCCCSEEECCSSS
T ss_pred CCCCCEEECCCCcCccCChhh------------ccCCCcCEEECCCC-cCCccChhhcC-CcccccccccccceEeecCc
Confidence 999999999999887665422 35678888888764 34443310000 00011235889999999996
Q ss_pred cCc--CCCcCCCCCcceE-EEEcCC
Q 042509 867 KLK--SLPNQLLQRTKLN-LNISLC 888 (892)
Q Consensus 867 ~L~--~lp~~l~~l~~L~-L~i~~c 888 (892)
-.. ..|..+..+.+|+ ++++++
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccCccccccccceeEEEeccc
Confidence 432 3345666788898 998876
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=1.1e-20 Score=219.54 Aligned_cols=309 Identities=12% Similarity=0.045 Sum_probs=204.3
Q ss_pred CccccccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCccc--ccccCCCCC
Q 042509 522 ESTSMEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELP--ETCCELFNL 597 (892)
Q Consensus 522 ~~~~~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L 597 (892)
.+..++++++|++++|.+..+ |..+.++++|++|+++++ +..+|.. .+.+|++|++++|.++.+| ..++++++|
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 445678999999999999887 566889999999999986 6788876 8999999999999999764 789999999
Q ss_pred CEEeccCcCCccccchhhhccccC--Ceeccccccc--c-cccccccC--------------------------Cc----
Q 042509 598 QTLEMEDCCNLKRLPQEIGKLVNL--RYLIYNDSYL--H-YLPRGIER--------------------------LT---- 642 (892)
Q Consensus 598 ~~L~L~~~~~~~~lp~~i~~l~~L--~~L~~~~~~l--~-~lp~~i~~--------------------------L~---- 642 (892)
++|++++|.. .. ..+..+++| ++|.++.|.+ . ..|..+.. ++
T Consensus 149 ~~L~L~~n~l-~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 149 TFLGLSAAKF-RQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CEEEEECSBC-CT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cEEecCCCcc-cc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999984 33 346666677 9997777665 2 22333322 22
Q ss_pred ---------------------------------------------------CCCcCCceEeccCCCccCCCCC--Ccccc
Q 042509 643 ---------------------------------------------------CLRTLSEFVVSRSGGKYGSKAS--NLEGL 669 (892)
Q Consensus 643 ---------------------------------------------------~L~~L~l~~~~~~~~~~~~~~~--~l~~L 669 (892)
+|++|++..|...+.. |.... ....+
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i-p~~~~~~~~~~L 304 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI-DREEFTYSETAL 304 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC-CCCCCCCCSCSC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc-cchhhhcccccc
Confidence 3444444444433211 11110 00222
Q ss_pred cccccCCC----------------------ceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhh
Q 042509 670 RHLNHLRG----------------------FLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQ 727 (892)
Q Consensus 670 ~~L~~L~~----------------------~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 727 (892)
+.|..+.. .+.+.+..-. . ......+++|+.|++++|.+.
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~-----~~~~~~l~~L~~L~l~~n~l~------------ 366 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-H-----MVCPPSPSSFTFLNFTQNVFT------------ 366 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-C-----CCCCSSCCCCCEEECCSSCCC------------
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-c-----ccCccCCCCceEEECCCCccc------------
Confidence 22211000 1111111000 0 000156778888888888775
Q ss_pred ccHHHHhhhCCCCCCCCeEEEeeecCCCCCC---chhhhccCCcEEEEeccCCCC-cCCC-CCCCCCCCeEEEcceEEEE
Q 042509 728 ANQGAISEALRPPPNLESLEIWEYKGKAVFE---NWIVSLNKLKKLFLINCYNCE-IMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 728 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~-~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
...+..+..+++|+.|++++|.+++ +| ..+..+++|+.|+|++|.+.. .++. +..+++|++|++++|.++.
T Consensus 367 ---~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 367 ---DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp ---TTTTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred ---cchhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 3356677788899999999998887 54 456788899999999988766 3333 7788889999998888643
Q ss_pred e-------CCcccCCCCCCCCCCCC---CCCccceeeccccccccccccccccCcccccCcCCccceeeecccc
Q 042509 803 V-------GDEFLGIKSNHSSGPAI---AFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 803 ~-------~~~~~~~~~n~~~~~~~---~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
. ..+.+.++.|.++..+. .+++|+.|.+.+. .+..++ ...+..+++|+.|++++||
T Consensus 443 ~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~-------~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVP-------DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCC-------TTSTTTCTTCCCEECCSCC
T ss_pred chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCC-------HHHHhcCCCCCEEEecCCC
Confidence 2 12334566676654332 4577778877763 444333 2236689999999999996
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.9e-21 Score=208.50 Aligned_cols=294 Identities=17% Similarity=0.100 Sum_probs=209.9
Q ss_pred CcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeeccc
Q 042509 550 RKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYN 627 (892)
Q Consensus 550 ~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~ 627 (892)
.+++.++++++ +..+|..+. ++|++|++++|.++.+| ..+.++++|++|++++|......|..++++++|++|.++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 47899999874 778888764 68999999999999775 579999999999999998545558889999999999989
Q ss_pred ccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 628 DSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 628 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
+|.+..+|..+. ++|++|++..|.+.. ..+.....+..|+.| .+.+.. +.. .......+..+ +|+.|
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L-------~l~~n~-l~~-~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCI-------EMGGNP-LEN-SGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEE-------ECCSCC-CBG-GGSCTTSSCSC-CCSCC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEE-------ECCCCc-ccc-CCCCcccccCC-ccCEE
Confidence 999999998776 899999999988764 222223334444433 221110 000 00112345555 89999
Q ss_pred EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCC
Q 042509 708 ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGK 786 (892)
Q Consensus 708 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~ 786 (892)
++++|.+.. ++..+ +++|++|++++|.+....|..+..+++|+.|+|++|.+...++. ++.
T Consensus 178 ~l~~n~l~~----------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 178 RISEAKLTG----------------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp BCCSSBCSS----------------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred ECcCCCCCc----------------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 999998742 33333 37899999999999985557888999999999999988777664 889
Q ss_pred CCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccc
Q 042509 787 LPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCA 866 (892)
Q Consensus 787 l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~ 866 (892)
+++|++|++++|.++.++..+ ..+++|+.|.+.+. .+..++...-. .......+++|+.|++.+||
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l------------~~l~~L~~L~l~~N-~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGL------------PDLKLLQVVYLHTN-NITKVGVNDFC-PVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTG------------GGCTTCCEEECCSS-CCCBCCTTSSS-CSSCCSSSCCBSEEECCSSS
T ss_pred CCCCCEEECCCCcCeecChhh------------hcCccCCEEECCCC-CCCccChhHcc-ccccccccccccceEeecCc
Confidence 999999999999988766432 25788888888773 44444310000 00001126889999999997
Q ss_pred cC--cCCCcCCCCCcceE-EEEcCCCC
Q 042509 867 KL--KSLPNQLLQRTKLN-LNISLCPT 890 (892)
Q Consensus 867 ~L--~~lp~~l~~l~~L~-L~i~~c~~ 890 (892)
.. ...|..+..+++|+ +++++|.+
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred ccccccCcccccccchhhhhhcccccC
Confidence 44 34455677899999 99998863
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.6e-20 Score=222.57 Aligned_cols=129 Identities=22% Similarity=0.184 Sum_probs=104.0
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 601 (892)
+.++++|++++|.++.+|+ .|.++++|++|+++++ +..+|. .|+++++|++|+|++|.|+.+|. .|.++.+|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 5788999999999888864 5888999999999886 666654 58889999999999999988875 478899999999
Q ss_pred ccCcCCccccch-hhhccccCCeeccccccccc--ccccccCCcCCCcCCceEeccC
Q 042509 602 MEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYLHY--LPRGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 602 L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~ 655 (892)
+++|. +..+|. .++++++|++|.++.|.+.. +|..++++++|++|+++.|.+.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99987 566654 57889999999888877764 4666788888888888776543
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4.3e-20 Score=213.29 Aligned_cols=115 Identities=20% Similarity=0.114 Sum_probs=93.4
Q ss_pred ccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCc
Q 042509 527 EKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDC 605 (892)
Q Consensus 527 ~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 605 (892)
.+++.|+++++.+..+|..+. ++|++|+++++ +..+|. .+++|++|+|++|.|+.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 457889999999888887665 78999999886 666776 57889999999999998887 6788999999998
Q ss_pred CCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCC
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 656 (892)
. +..+|. .+++|++|.+++|.+..+|.. +++|++|+++.|.+..
T Consensus 112 ~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 112 P-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp C-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred c-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC
Confidence 7 777776 678899998888888888874 4788888888776543
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=6.3e-20 Score=205.77 Aligned_cols=295 Identities=19% Similarity=0.220 Sum_probs=198.2
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
++++++|++++|.+..+|.. +++|++|+++++ +..+|.. ..+|++|++++|.++.+| .++++++|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 57899999999998888743 478999999886 4444431 268999999999999888 589999999999999
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|. +..+|..+ .+|++|.+++|.+..+| .++++++|++|++..|.... .+. ....|+.| .+.+.
T Consensus 163 N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L-------~l~~n 225 (454)
T 1jl5_A 163 NS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK--LPD---LPLSLESI-------VAGNN 225 (454)
T ss_dssp SC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCC---CCTTCCEE-------ECCSS
T ss_pred Cc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc--CCC---CcCcccEE-------ECcCC
Confidence 87 66677643 58999988888888887 68899999999988887654 111 11233332 22221
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
.+... ..+..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+.+ +|.+ +
T Consensus 226 -~l~~l-----p~~~~l~~L~~L~l~~N~l~~----------------l~~---~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 226 -ILEEL-----PELQNLPFLTTIYADNNLLKT----------------LPD---LPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp -CCSSC-----CCCTTCTTCCEEECCSSCCSS----------------CCS---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -cCCcc-----cccCCCCCCCEEECCCCcCCc----------------ccc---cccccCEEECCCCcccc-cCcc---c
Confidence 11111 136678899999999888742 222 24788999999998887 7765 3
Q ss_pred cCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC-----cccCCCCCCCCCCCCCCCccceeecccccccccc
Q 042509 765 NKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD-----EFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEW 839 (892)
Q Consensus 765 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-----~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~ 839 (892)
++|+.|++++|.+... +.+ .++|++|++++|.++.++. +.+..+.|.+++.+..+++|+.|.+.+. .+..+
T Consensus 277 ~~L~~L~ls~N~l~~l-~~~--~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-SEL--PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp TTCCEEECCSSCCSEE-SCC--CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred CcCCEEECcCCccCcc-cCc--CCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccccc
Confidence 7888999988865542 222 2678888888888766542 2345566777665556788888888764 34333
Q ss_pred ccccccCcccccCcCCccceeeecccccCcC---CCcCCCCC-------------cceE-EEEcCCC
Q 042509 840 DFGITRSGKEEITIMPQLNSLEIILCAKLKS---LPNQLLQR-------------TKLN-LNISLCP 889 (892)
Q Consensus 840 ~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~---lp~~l~~l-------------~~L~-L~i~~c~ 889 (892)
+ . .+++|+.|++++| .+.. +|..+..+ ++|+ |++++++
T Consensus 353 p--------~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 353 P--------E---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C--------C---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC---------------------
T ss_pred c--------c---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3 1 4688888888888 4554 56666655 7788 8887764
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.7e-20 Score=210.30 Aligned_cols=317 Identities=17% Similarity=0.137 Sum_probs=140.9
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-c-cccChhhcCcCCc-------------ceEEcCCCCCCccccc
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-I-CEIPKEIENFMYL-------------RFLKLSKAEIVELPET 590 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~-~~lp~~i~~l~~L-------------~~L~L~~~~i~~lp~~ 590 (892)
.+.++.+.+++|.+..+|..+.++++|++|+++++ + ..+|..++++.+| ++|++++|.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 45677777777777777777777777777777664 2 2456666555543 5555555555554432
Q ss_pred cc-----------------CCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEec
Q 042509 591 CC-----------------ELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 591 i~-----------------~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 653 (892)
.. .+.+|++|++++|. +..+|.. .++|++|.+++|.+..+| .++++++|++|++++|.
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc
Confidence 10 11344444444443 3333321 146777766666666666 47777777777777766
Q ss_pred cCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhH-h---hhhhhhcc
Q 042509 654 RSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEE-E---SMEENQAN 729 (892)
Q Consensus 654 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~---~~~~~~~~ 729 (892)
... .+. ....|+.| .+.+. .+... ..+..+++|+.|++++|.+.+.... . ...-....
T Consensus 165 l~~--lp~---~~~~L~~L-------~L~~n-~l~~l-----~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 165 LKK--LPD---LPPSLEFI-------AAGNN-QLEEL-----PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 226 (454)
T ss_dssp CSC--CCC---CCTTCCEE-------ECCSS-CCSSC-----CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred Ccc--cCC---CcccccEE-------ECcCC-cCCcC-----ccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc
Confidence 543 111 11223222 11111 01110 1356667777777777665420000 0 00000000
Q ss_pred HHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC----
Q 042509 730 QGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD---- 805 (892)
Q Consensus 730 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~---- 805 (892)
...++ .+..+++|++|++++|.+.+ +|.. +++|+.|++++|..... |. .+++|++|++++|.++.++.
T Consensus 227 l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~--~~~~L~~L~ls~N~l~~l~~~~~~ 298 (454)
T 1jl5_A 227 LEELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PE--LPQSLTFLDVSENIFSGLSELPPN 298 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSEESCCCTT
T ss_pred CCccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc-Cc--ccCcCCEEECcCCccCcccCcCCc
Confidence 00111 13334444444444444444 3332 23444444444443331 11 12455666666655544321
Q ss_pred -cccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-E
Q 042509 806 -EFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-L 883 (892)
Q Consensus 806 -~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L 883 (892)
+.+..+.|.+.+.....++|+.|.+.+. .+..++ ..+++|+.|++++| +++.+|. .+++|+ |
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp-----------~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L 362 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP-----------ALPPRLERLIASFN-HLAEVPE---LPQNLKQL 362 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEE
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc-----------ccCCcCCEEECCCC-ccccccc---hhhhccEE
Confidence 1223334444332211135555555442 222221 13688999999998 7888887 378899 9
Q ss_pred EEcCCC
Q 042509 884 NISLCP 889 (892)
Q Consensus 884 ~i~~c~ 889 (892)
++++|+
T Consensus 363 ~L~~N~ 368 (454)
T 1jl5_A 363 HVEYNP 368 (454)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 998875
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=205.92 Aligned_cols=218 Identities=16% Similarity=0.121 Sum_probs=157.0
Q ss_pred ceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCc
Q 042509 529 LRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDC 605 (892)
Q Consensus 529 lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 605 (892)
....+.+++.++.+|..+. ++|++|+++++ +..+|. .++++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus 33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3346777788888887654 58899999885 666665 6888999999999999888664 56888999999999988
Q ss_pred CCccccchh-hhccccCCeecccccccccccc--cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEe
Q 042509 606 CNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIV 682 (892)
Q Consensus 606 ~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 682 (892)
. ++.+|.. ++++++|++|.+++|.+..+|. .+.++++|++|++..|.... .+.
T Consensus 111 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------~~~-- 166 (353)
T 2z80_A 111 Y-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------KIQ-- 166 (353)
T ss_dssp C-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------EEC--
T ss_pred c-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------------------ccC--
Confidence 7 6667655 7889999999888888888876 57788888888877763211 000
Q ss_pred ccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh
Q 042509 683 GLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV 762 (892)
Q Consensus 683 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 762 (892)
...+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+.. +|..+.
T Consensus 167 ------------~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~ 218 (353)
T 2z80_A 167 ------------RKDFAGLTFLEELEIDASDLQ---------------SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV 218 (353)
T ss_dssp ------------TTTTTTCCEEEEEEEEETTCC---------------EECTTTTTTCSEEEEEEEECSCSTT-HHHHHH
T ss_pred ------------HHHccCCCCCCEEECCCCCcC---------------ccCHHHHhccccCCeecCCCCcccc-chhhhh
Confidence 023556678888899888875 2235567778888899998888766 665543
Q ss_pred -hccCCcEEEEeccCCCCcCCC----CCCCCCCCeEEEcceEE
Q 042509 763 -SLNKLKKLFLINCYNCEIMPP----LGKLPFLESLKIRNMNV 800 (892)
Q Consensus 763 -~l~~L~~L~L~~~~~~~~~~~----l~~l~~L~~L~L~~~~l 800 (892)
.+++|+.|+|++|.+....+. ....+.++.++++++.+
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred hhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 578888888888876543322 23355666666666543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.5e-19 Score=192.69 Aligned_cols=240 Identities=16% Similarity=0.100 Sum_probs=173.1
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChh-hcCcCCcceEEcCCCCCCcc---cccccCCCCCCEEeccC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKE-IENFMYLRFLKLSKAEIVEL---PETCCELFNLQTLEMED 604 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~ 604 (892)
+.+....+.+..+|..+. ++|++|+++++ +..+|.. ++++++|++|+|++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 356666777777776543 57888888775 5666654 57788888888888887744 56666778888888888
Q ss_pred cCCccccchhhhccccCCeecccccccccccc--cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEe
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIV 682 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 682 (892)
|. +..+|..+..+++|++|.++.|.+..+|. .+.++++|++|++..|....
T Consensus 88 n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------- 140 (306)
T 2z66_A 88 NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------------------- 140 (306)
T ss_dssp CS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE--------------------------
T ss_pred Cc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc--------------------------
Confidence 77 66777777888888888777777776654 56777777777765553321
Q ss_pred ccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh
Q 042509 683 GLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV 762 (892)
Q Consensus 683 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~ 762 (892)
.....+..+++|+.|++++|.+.+ ...+..+..+++|++|++++|.+++..|.++.
T Consensus 141 ----------~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 141 ----------AFNGIFNGLSSLEVLKMAGNSFQE--------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp ----------CSTTTTTTCTTCCEEECTTCEEGG--------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ----------cchhhcccCcCCCEEECCCCcccc--------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence 001235567889999998887641 13456677888999999999998885577888
Q ss_pred hccCCcEEEEeccCCCCcCC-CCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCC-Cccceeecccc
Q 042509 763 SLNKLKKLFLINCYNCEIMP-PLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAF-PKLKHLKFMKL 833 (892)
Q Consensus 763 ~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f-~~L~~L~l~~l 833 (892)
.+++|+.|+|++|.+....+ .+..+++|++|++++|.++......+. .+ ++|+.|.+.+.
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----------~~~~~L~~L~L~~N 258 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-----------HFPSSLAFLNLTQN 258 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-----------CCCTTCCEEECTTC
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-----------hhhccCCEEEccCC
Confidence 89999999999987766555 378889999999999987765543322 34 37888888763
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.6e-19 Score=192.44 Aligned_cols=227 Identities=18% Similarity=0.091 Sum_probs=185.7
Q ss_pred cccceEEEEEeCCCCCcccc-ccCCCcceEEEecCC-cccc---ChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPVS-IFKARKLRSLLIVGP-ICEI---PKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~-~~~~~~Lr~L~l~~~-~~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 600 (892)
++++++|++++|.+..+|.. +.++++|++|+++++ +..+ |..+..+.+|++|++++|.+..+|..+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 57899999999999999875 679999999999986 3333 677888999999999999999999999999999999
Q ss_pred eccCcCCccccc--hhhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCC
Q 042509 601 EMEDCCNLKRLP--QEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRG 677 (892)
Q Consensus 601 ~L~~~~~~~~lp--~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 677 (892)
++++|. +..+| ..+..+++|++|.+++|.+...+ ..+.++++|++|++.+|.....
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------- 165 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------------------- 165 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--------------------
T ss_pred ECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--------------------
Confidence 999998 66665 47899999999988888777554 4578899999998876654320
Q ss_pred ceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 042509 678 FLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVF 757 (892)
Q Consensus 678 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 757 (892)
. .+..+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+++..
T Consensus 166 -~--------------~~~~~~~l~~L~~L~Ls~n~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 166 -F--------------LPDIFTELRNLTFLDLSQCQLE---------------QLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp -E--------------ECSCCTTCTTCCEEECTTSCCC---------------EECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred -c--------------chhHHhhCcCCCEEECCCCCcC---------------CcCHHHhcCCCCCCEEECCCCccCccC
Confidence 0 0123556789999999999875 223566778899999999999998844
Q ss_pred CchhhhccCCcEEEEeccCCCCcCCC-CCCCC-CCCeEEEcceEEEEe
Q 042509 758 ENWIVSLNKLKKLFLINCYNCEIMPP-LGKLP-FLESLKIRNMNVKKV 803 (892)
Q Consensus 758 p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~-~L~~L~L~~~~l~~~ 803 (892)
+..+..+++|+.|+|++|.+....+. +..+| +|++|+|++|++++.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 45678899999999999988776665 88885 999999999998753
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=193.85 Aligned_cols=252 Identities=13% Similarity=0.065 Sum_probs=184.9
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
.+++++|++++|.+..+|. .+.++++|++|+++++ +..+ |..++++++|++|++++|.++.+|.. ++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 5689999999999998876 6889999999999986 5555 46799999999999999999999877 89999999999
Q ss_pred ccCcCCccccch--hhhccccCCeeccccc-cccccc-ccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCC
Q 042509 602 MEDCCNLKRLPQ--EIGKLVNLRYLIYNDS-YLHYLP-RGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRG 677 (892)
Q Consensus 602 L~~~~~~~~lp~--~i~~l~~L~~L~~~~~-~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 677 (892)
+++|. +..+|. .+.++++|++|.+++| .+..++ ..+.++++|++|++..|.... ..+.....+..|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~------- 201 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVS------- 201 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEE-------
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCC-------
Confidence 99998 677876 7899999999977666 567664 568999999999999987754 2222222233222
Q ss_pred ceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCC--
Q 042509 678 FLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKA-- 755 (892)
Q Consensus 678 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-- 755 (892)
.+.+.+.. +.... ...+..+++|+.|++++|.+.+.. ............++.++++++.+.+
T Consensus 202 ~L~l~~n~-l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~------------~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 202 HLILHMKQ-HILLL---EIFVDVTSSVECLELRDTDLDTFH------------FSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp EEEEECSC-STTHH---HHHHHHTTTEEEEEEESCBCTTCC------------CC------CCCCCCEEEEESCBCCHHH
T ss_pred eecCCCCc-cccch---hhhhhhcccccEEECCCCcccccc------------ccccccccccchhhccccccccccCcc
Confidence 33333322 22221 122345688999999988875210 0001112345678888888877654
Q ss_pred --CCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 756 --VFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 756 --~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
.+|.++..+++|+.|+|++|.+...++. ++.+++|++|+|++|++.+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1577788889999999999987766555 5889999999999987543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=7.2e-19 Score=198.28 Aligned_cols=242 Identities=20% Similarity=0.170 Sum_probs=137.3
Q ss_pred EEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCC
Q 042509 531 HFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCN 607 (892)
Q Consensus 531 ~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 607 (892)
.+...+..+..+|..+. +++++|+++++ +..+ |..|+++++|++|+|++|.|+.++ ..+.++++|++|+|++|.
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~- 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-
Confidence 34444444444443332 34555555543 3332 334555555555555555555433 345555555555555554
Q ss_pred ccccch-hhhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccC
Q 042509 608 LKRLPQ-EIGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLG 685 (892)
Q Consensus 608 ~~~lp~-~i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~ 685 (892)
+..+|. .+..+++|++|.+++|.+..+|. .+.++++|+.|++..+.......+.....+..|+.|+ +.+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~-------L~~n- 206 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN-------LGMC- 206 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE-------CTTS-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE-------CCCC-
Confidence 333332 24555555555555555554443 2445555555555443222211111122222222221 1100
Q ss_pred CCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhcc
Q 042509 686 NVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLN 765 (892)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~ 765 (892)
++... ..+..+++|+.|+|++|.+. ...+..+..+++|+.|++++|.+....|..+..++
T Consensus 207 ~l~~~-----~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 207 NIKDM-----PNLTPLVGLEELEMSGNHFP---------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp CCSSC-----CCCTTCTTCCEEECTTSCCS---------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccc-----ccccccccccEEECcCCcCc---------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 00000 12556788999999998875 23356677889999999999999885677788899
Q ss_pred CCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEe
Q 042509 766 KLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 766 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~ 803 (892)
+|+.|+|++|.+...++. +..+++|+.|+|++|++.+.
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999987766655 78899999999999987654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=197.23 Aligned_cols=242 Identities=21% Similarity=0.194 Sum_probs=141.7
Q ss_pred EEEEEeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCC
Q 042509 531 HFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCN 607 (892)
Q Consensus 531 ~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 607 (892)
.+...+..+..+|..+. ++++.|+++++ +..++ ..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~- 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-
Confidence 44444444555554433 45555555553 33332 44555555666666655555443 345555566666665555
Q ss_pred ccccch-hhhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccC
Q 042509 608 LKRLPQ-EIGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLG 685 (892)
Q Consensus 608 ~~~lp~-~i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~ 685 (892)
+..+|. .+..+++|++|.+++|.+..+|. .+.++++|++|++..+.......+..+..+.+|+.|+ +.+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~-------L~~n- 195 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN-------LAMC- 195 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE-------CTTS-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec-------CCCC-
Confidence 334433 35555556666555555555544 3455555555555543322211111122222222221 1110
Q ss_pred CCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhcc
Q 042509 686 NVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLN 765 (892)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~ 765 (892)
++... ..+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|.+....|..+..++
T Consensus 196 ~l~~~-----~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 196 NLREI-----PNLTPLIKLDELDLSGNHLS---------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp CCSSC-----CCCTTCSSCCEEECTTSCCC---------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cCccc-----cccCCCcccCEEECCCCccC---------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 00000 12556788999999988875 22355677889999999999998885577788899
Q ss_pred CCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEe
Q 042509 766 KLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 766 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~ 803 (892)
+|+.|+|++|.+...++. +..+++|+.|+|++|++.+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 999999999987766665 78899999999999987653
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=193.29 Aligned_cols=240 Identities=20% Similarity=0.224 Sum_probs=165.2
Q ss_pred ceEEEecC-CccccChhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccc
Q 042509 552 LRSLLIVG-PICEIPKEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDS 629 (892)
Q Consensus 552 Lr~L~l~~-~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~ 629 (892)
.+.++..+ ++..+|..+. .++++|+|++|.|+.++ ..+.++++|++|+|++|......|..+.++++|++|.+++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45666665 4778888765 78999999999999776 67999999999999999844444578999999999988889
Q ss_pred cccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEE
Q 042509 630 YLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLE 708 (892)
Q Consensus 630 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 708 (892)
.+..+|.+ +.++++|++|++++|.+.. ..+..+..+..|+.| .+.++..+.. .....+.++++|+.|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L-------~l~~~~~l~~---i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRL-------DLGELKRLSY---ISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEE-------ECCCCTTCCE---ECTTTTTTCSSCCEEE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEe-------CCCCCCCcce---eCcchhhcccccCeec
Confidence 99988874 8899999999999887653 222222233333322 2222211111 1113456677777777
Q ss_pred EEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCC
Q 042509 709 LWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKL 787 (892)
Q Consensus 709 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l 787 (892)
+++|.+.. + ..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+....+. +..+
T Consensus 192 L~~n~l~~----------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 192 LAMCNLRE----------------I-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CTTSCCSS----------------C-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CCCCcCcc----------------c-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 77776642 2 2356667777777777777764466677777777777777766655544 6777
Q ss_pred CCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccc
Q 042509 788 PFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMK 832 (892)
Q Consensus 788 ~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~ 832 (892)
++|+.|+|++|.++.++...+. .+++|+.|.+.+
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~-----------~l~~L~~L~L~~ 288 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFT-----------PLHHLERIHLHH 288 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTS-----------SCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCccChhHhc-----------cccCCCEEEcCC
Confidence 7777777777777666544332 456667766654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.3e-18 Score=183.35 Aligned_cols=220 Identities=20% Similarity=0.186 Sum_probs=171.8
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 606 (892)
+.++...+.+..+|..+ .++|++|+++++ +..++ ..++++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56777777788887544 468999999885 55665 4588899999999999998866 6778899999999999987
Q ss_pred Ccccc-chhhhccccCCeeccccccccccc-ccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 607 NLKRL-PQEIGKLVNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 607 ~~~~l-p~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
.++.+ |..+..+++|++|.+++|.+..++ ..+.++++|++|++..|.+.. +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~-------- 145 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------------------LP-------- 145 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------CC--------
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------------------cC--------
Confidence 45555 677889999999988887777764 457888889988877665432 00
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
...+..+++|+.|++++|.+.. .....+..+++|+.|++++|.+.+..|.++..+
T Consensus 146 ----------~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 146 ----------DDTFRDLGNLTHLFLHGNRISS---------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCCE---------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ----------HhHhccCCCccEEECCCCcccc---------------cCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 0235567889999999888752 122346778999999999999988568888899
Q ss_pred cCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 765 NKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 765 ~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
++|+.|+|++|.+...++. +..+++|++|++++|++.+
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 9999999999987776655 8889999999999998765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.3e-18 Score=194.16 Aligned_cols=240 Identities=21% Similarity=0.244 Sum_probs=186.1
Q ss_pred ceEEEecC-CccccChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccc
Q 042509 552 LRSLLIVG-PICEIPKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDS 629 (892)
Q Consensus 552 Lr~L~l~~-~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~ 629 (892)
.+.++..+ ++..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|......|..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45666665 4677887664 6899999999999966 567999999999999999854445578999999999998999
Q ss_pred cccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEE
Q 042509 630 YLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLE 708 (892)
Q Consensus 630 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 708 (892)
.+..+|.+ +.++++|++|++++|.+.. ..+..+..+..|+. +.+.++..+... ....+..+++|+.|+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~-------L~l~~~~~l~~i---~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMR-------LDLGELKKLEYI---SEGAFEGLFNLKYLN 202 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCE-------EECCCCTTCCEE---CTTTTTTCTTCCEEE
T ss_pred cCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccE-------EeCCCCCCcccc---ChhhccCCCCCCEEE
Confidence 99988876 8889999999999998764 22222333444433 333332222221 123577889999999
Q ss_pred EEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCC
Q 042509 709 LWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKL 787 (892)
Q Consensus 709 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l 787 (892)
|++|.+.. + ..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+....+. +..+
T Consensus 203 L~~n~l~~----------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 203 LGMCNIKD----------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTSCCSS----------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCcccc----------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 99998852 2 3477889999999999999985688899999999999999988776665 8999
Q ss_pred CCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccc
Q 042509 788 PFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMK 832 (892)
Q Consensus 788 ~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~ 832 (892)
++|+.|+|++|.++.++...+. .+++|+.|.+.+
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~-----------~l~~L~~L~L~~ 299 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFT-----------PLRYLVELHLHH 299 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSST-----------TCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCccChHHhc-----------cccCCCEEEccC
Confidence 9999999999998877765442 568888888875
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=3.3e-18 Score=202.54 Aligned_cols=135 Identities=22% Similarity=0.180 Sum_probs=109.0
Q ss_pred EeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCcccc
Q 042509 535 VLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRL 611 (892)
Q Consensus 535 ~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l 611 (892)
++.+++++|..+. +++++|++++| +..+| ..|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++|+ ++.+
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSL 115 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEE
T ss_pred CCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCC
Confidence 3345778886653 58999999986 77776 469999999999999999998876 58999999999999998 6777
Q ss_pred c-hhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCccccccc
Q 042509 612 P-QEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHL 672 (892)
Q Consensus 612 p-~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 672 (892)
| ..+.++++|++|+++.|.+..+|.. ++++++|++|+++.|.+.....+.....+..|+.|
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 6 4589999999998888899988865 89999999999999987653334434444444443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.4e-19 Score=191.82 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=137.7
Q ss_pred CCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeec
Q 042509 548 KARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLI 625 (892)
Q Consensus 548 ~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 625 (892)
.+++|++|+++++ +..++ ..++++++|++|+|++|.++..+. +..+++|++|++++|. +..+| ..++|++|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 3455666666654 33333 455666666666666666654443 5666666666666665 44443 235666665
Q ss_pred ccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcc-cCCCCC
Q 042509 626 YNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAEL-EKKKNL 704 (892)
Q Consensus 626 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l-~~~~~L 704 (892)
++.|.+..++.. .+++|++|+++.|.+.. ..+.....+..|+.| .+.+. .+.. .....+ ..+++|
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L-------~Ls~N-~l~~---~~~~~~~~~l~~L 171 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYL-------DLKLN-EIDT---VNFAELAASSDTL 171 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEE-------ECTTS-CCCE---EEGGGGGGGTTTC
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCC-ccchhhhccCCCCEE-------ECCCC-CCCc---ccHHHHhhccCcC
Confidence 555555555432 24556666666555443 111111122222222 11100 0000 001122 356788
Q ss_pred CeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCC
Q 042509 705 FRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPL 784 (892)
Q Consensus 705 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l 784 (892)
+.|++++|.+.. + .....+++|++|++++|.+++ +|..+..+++|+.|+|++|.+...++.+
T Consensus 172 ~~L~L~~N~l~~----------------~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 172 EHLNLQYNFIYD----------------V-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEECTTSCCCE----------------E-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CEEECCCCcCcc----------------c-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHh
Confidence 888888887752 1 223347888888888888887 7777888888888888888777665568
Q ss_pred CCCCCCCeEEEcceEEEEe-CCcccCCCCCCCCCCCCCCCccceeeccccccccc
Q 042509 785 GKLPFLESLKIRNMNVKKV-GDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEE 838 (892)
Q Consensus 785 ~~l~~L~~L~L~~~~l~~~-~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~ 838 (892)
..+++|+.|++++|.+.+. ....+ ..+++|+.|.+.++..++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~-----------~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFF-----------SKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHH-----------HTCHHHHHHHHHHHHHHHS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHH-----------hccccceEEECCCchhccC
Confidence 8888888888888886521 11111 2456666666655544433
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.7e-17 Score=191.59 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=97.8
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
+++++.|++++|.+..+|. .+++|++|+++++ +..+|. .+++|++|+|++|.++.+|. .+.+|++|++++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 4789999999999999986 6799999999986 667776 78999999999999999987 678999999999
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCC
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 656 (892)
|. +..+|.. +++|++|.+++|.+..+|.. +++|+.|++.+|.+..
T Consensus 131 N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 131 NQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS 175 (622)
T ss_dssp SC-CSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred CC-CCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC
Confidence 98 7778874 58999998888889888864 4677888877776553
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=8.5e-19 Score=198.64 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=76.6
Q ss_pred ccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCC-CCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccC
Q 042509 698 LEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALR-PPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCY 776 (892)
Q Consensus 698 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 776 (892)
+..+++|+.|+|++|.+.+ ..+..+. .+++|+.|+|++|.+++ +|... .+++|+.|+|++|.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~---------------~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~~-~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDT---------------VNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNK 202 (487)
T ss_dssp GGGGSSEEEEECTTSCCCE---------------EEGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCC---------------cChHHHhhhCCcccEEecCCCcccc-ccccc-cCCCCCEEECCCCC
Confidence 4455677777777776652 1233332 45677777777777766 44322 46777777777776
Q ss_pred CCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCc
Q 042509 777 NCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQ 856 (892)
Q Consensus 777 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~ 856 (892)
+...++.++.+++|+.|+|++|.++.++..+ ..+++|+.|.+.+.+- .... .+..+..++.
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l------------~~l~~L~~L~l~~N~l-~c~~------~~~~~~~l~~ 263 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKAL------------RFSQNLEHFDLRGNGF-HCGT------LRDFFSKNQR 263 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTC------------CCCTTCCEEECTTCCB-CHHH------HHHHHTTCHH
T ss_pred CCCCCHhHcCCCCccEEEecCCcCcccchhh------------ccCCCCCEEEcCCCCC-cCcc------hHHHHHhCCC
Confidence 6666666777777777777777776665421 2456666666665321 1001 1223345666
Q ss_pred cceeeec
Q 042509 857 LNSLEII 863 (892)
Q Consensus 857 L~~L~i~ 863 (892)
|+.|.+.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666665
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.6e-18 Score=182.68 Aligned_cols=202 Identities=22% Similarity=0.214 Sum_probs=166.3
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCC-CCcc-cccccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAE-IVEL-PETCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L 600 (892)
++++++|++++|.+..++. .+..+++|++|+++++ +..+ |..++++++|++|++++|. ++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 6789999999999988874 5889999999999986 5555 7789999999999999997 8877 6779999999999
Q ss_pred eccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCce
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFL 679 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 679 (892)
++++|......|..+.++++|++|.+++|.+..+|.. +.++++|++|++.+|.+.. +
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~ 168 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----------------------V 168 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----------------------E
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc----------------------c
Confidence 9999985555577889999999998888889888765 7889999999987765432 0
Q ss_pred EEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCc
Q 042509 680 AIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFEN 759 (892)
Q Consensus 680 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~ 759 (892)
. ...+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+++..+.
T Consensus 169 ~--------------~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 169 P--------------ERAFRGLHSLDRLLLHQNRVA---------------HVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp C--------------TTTTTTCTTCCEEECCSSCCC---------------EECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred C--------------HHHhcCccccCEEECCCCccc---------------ccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 0 023556788999999999875 23356777889999999999999983335
Q ss_pred hhhhccCCcEEEEeccCCC
Q 042509 760 WIVSLNKLKKLFLINCYNC 778 (892)
Q Consensus 760 ~~~~l~~L~~L~L~~~~~~ 778 (892)
.+..+++|+.|+|++|...
T Consensus 220 ~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHTTCTTCCEEECCSSCEE
T ss_pred HcccCcccCEEeccCCCcc
Confidence 6888999999999998754
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=2e-20 Score=212.22 Aligned_cols=338 Identities=17% Similarity=0.079 Sum_probs=182.6
Q ss_pred cccceEEEEEeCCCC-----CccccccCCCcceEEEecCC-ccc-cChhh-cCcC----CcceEEcCCCCCC-----ccc
Q 042509 526 MEKLRHFMLVLGKSV-----AFPVSIFKARKLRSLLIVGP-ICE-IPKEI-ENFM----YLRFLKLSKAEIV-----ELP 588 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~-----~~p~~~~~~~~Lr~L~l~~~-~~~-lp~~i-~~l~----~L~~L~L~~~~i~-----~lp 588 (892)
++++++|++++|.+. .++..+..+++|++|+++++ +.. .+..+ ..+. +|++|+|++|.++ .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 567888888888765 34666777788888888875 222 12222 2344 6888888888877 457
Q ss_pred ccccCCCCCCEEeccCcCCccccchhhhc-----cccCCeeccccccccc-----ccccccCCcCCCcCCceEeccCCCc
Q 042509 589 ETCCELFNLQTLEMEDCCNLKRLPQEIGK-----LVNLRYLIYNDSYLHY-----LPRGIERLTCLRTLSEFVVSRSGGK 658 (892)
Q Consensus 589 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-----l~~L~~L~~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~ 658 (892)
..+.++++|++|++++|......+..+.. +++|++|.+++|.+.. ++..+..+++|++|++++|......
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 77888888888888888733332333322 4568888666666653 3455667788888888777653210
Q ss_pred cCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhh-hC
Q 042509 659 YGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISE-AL 737 (892)
Q Consensus 659 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 737 (892)
.......+. ..+..++ .+.+.++.-...........+..+++|++|++++|.+... ....+.. ..
T Consensus 187 ~~~l~~~l~--~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----------~~~~l~~~~~ 252 (461)
T 1z7x_W 187 VRVLCQGLK--DSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV-----------GMAELCPGLL 252 (461)
T ss_dssp HHHHHHHHH--HSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH-----------HHHHHHHHHT
T ss_pred HHHHHHHHh--cCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH-----------HHHHHHHHHh
Confidence 000000000 0011222 3333222111111122334566778888888888876420 0011222 23
Q ss_pred CCCCCCCeEEEeeecCCCC----CCchhhhccCCcEEEEeccCCCCcCC-CC-----CCCCCCCeEEEcceEEEEeCCcc
Q 042509 738 RPPPNLESLEIWEYKGKAV----FENWIVSLNKLKKLFLINCYNCEIMP-PL-----GKLPFLESLKIRNMNVKKVGDEF 807 (892)
Q Consensus 738 ~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~~~-~l-----~~l~~L~~L~L~~~~l~~~~~~~ 807 (892)
.++++|++|++++|.++.. +|..+..+++|+.|+|++|.+....+ .+ ...++|++|++++|.++..+...
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3567888888888876542 35555567888888888775432111 01 22367888888877755432111
Q ss_pred cCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccC-cCCccceeeecccccCc-----CCCcCCCCCcce
Q 042509 808 LGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEIT-IMPQLNSLEIILCAKLK-----SLPNQLLQRTKL 881 (892)
Q Consensus 808 ~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~-~lp~L~~L~i~~c~~L~-----~lp~~l~~l~~L 881 (892)
+... ...+++|+.|.+.+. .+...... .....+. ..++|+.|++++| .++ .+|..+..+++|
T Consensus 333 l~~~-------l~~~~~L~~L~Ls~n-~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 333 FSSV-------LAQNRFLLELQISNN-RLEDAGVR---ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp HHHH-------HHHCSSCCEEECCSS-BCHHHHHH---HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCC
T ss_pred HHHH-------HhhCCCccEEEccCC-ccccccHH---HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCc
Confidence 1000 012355666665543 22211100 0000010 1456666666666 444 455555556666
Q ss_pred E-EEEcCCC
Q 042509 882 N-LNISLCP 889 (892)
Q Consensus 882 ~-L~i~~c~ 889 (892)
+ |++++|+
T Consensus 401 ~~L~l~~N~ 409 (461)
T 1z7x_W 401 RELDLSNNC 409 (461)
T ss_dssp CEEECCSSS
T ss_pred cEEECCCCC
Confidence 6 6666653
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.6e-19 Score=186.66 Aligned_cols=202 Identities=18% Similarity=0.094 Sum_probs=113.3
Q ss_pred CcceEEEecCCccccChhhcCcCCcceEEcCCCCCC--ccccccc-------CCCCCCEEeccCcCCccccchhh--hcc
Q 042509 550 RKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIV--ELPETCC-------ELFNLQTLEMEDCCNLKRLPQEI--GKL 618 (892)
Q Consensus 550 ~~Lr~L~l~~~~~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~~~~lp~~i--~~l 618 (892)
++|+.|++.++...+|..+... |++|+|++|.++ .+|..+. ++.+|++|++++|...+.+|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTTCCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeecccccccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3444444444322445544433 555566655553 3444443 45566666666655334555544 556
Q ss_pred ccCCeecccccccccccccccCC-----cCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhh
Q 042509 619 VNLRYLIYNDSYLHYLPRGIERL-----TCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEA 693 (892)
Q Consensus 619 ~~L~~L~~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~ 693 (892)
++|++|++++|.+..+|..++.+ ++|++|++++|.+...
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~------------------------------------ 164 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF------------------------------------ 164 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC------------------------------------
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc------------------------------------
Confidence 66666655555555555444444 5566665555543220
Q ss_pred hhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhC--CCCCCCCeEEEeeecCCCCCCc---h-hhhccCC
Q 042509 694 KNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEAL--RPPPNLESLEIWEYKGKAVFEN---W-IVSLNKL 767 (892)
Q Consensus 694 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~~~p~---~-~~~l~~L 767 (892)
....+.++++|+.|++++|.+.+. ..++..+ ..+++|++|++++|.++. +|. . +..+++|
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGE-------------RGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQL 230 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHH-------------HHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCC
T ss_pred hHHHhccCCCCCEEECCCCCcCcc-------------hHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCC
Confidence 002344566777777777765421 1123333 567788888888887764 332 2 2356788
Q ss_pred cEEEEeccCCCCcCC--CCCCCCCCCeEEEcceEEEEe
Q 042509 768 KKLFLINCYNCEIMP--PLGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 768 ~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~l~~~ 803 (892)
+.|+|++|.+...+| .+..+++|++|+|++|.++.+
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 888888887666543 356678888888888776544
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.1e-19 Score=191.80 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=96.9
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-c--cccChhhc-------CcCCcceEEcCCCCCC-cccccc--c
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-I--CEIPKEIE-------NFMYLRFLKLSKAEIV-ELPETC--C 592 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~--~~lp~~i~-------~l~~L~~L~L~~~~i~-~lp~~i--~ 592 (892)
..+++.+.+.+|.+ .+|..+... |++|+++++ + ..+|..+. ++.+|++|+|++|.++ .+|..+ .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 44566677777777 677666554 777877764 2 23566655 7889999999999988 688876 8
Q ss_pred CCCCCCEEeccCcCCccccchhhhcc-----ccCCeeccccccccccc-ccccCCcCCCcCCceEecc
Q 042509 593 ELFNLQTLEMEDCCNLKRLPQEIGKL-----VNLRYLIYNDSYLHYLP-RGIERLTCLRTLSEFVVSR 654 (892)
Q Consensus 593 ~L~~L~~L~L~~~~~~~~lp~~i~~l-----~~L~~L~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~ 654 (892)
.+++|++|++++|. +..+|..++.+ ++|++|.+++|.+..+| ..++++++|++|++++|..
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 89999999999988 55558888887 89999988888888777 5688899999998887764
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=2e-17 Score=175.84 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=144.4
Q ss_pred cCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeec
Q 042509 547 FKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLI 625 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 625 (892)
..+++|++|++.++ +..+| .+..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.++++|++|.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 44566677777664 44454 46777888888888888877776 7778888888888877 56665 577788888887
Q ss_pred ccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCC
Q 042509 626 YNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLF 705 (892)
Q Consensus 626 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 705 (892)
+++|.+..+|. +..+++|++|+++.|.... + ..+..+++|+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~---------~-----------------------------~~l~~l~~L~ 154 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITN---------I-----------------------------SPLAGLTNLQ 154 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCC---------C-----------------------------GGGGGCTTCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCc---------C-----------------------------ccccCCCCcc
Confidence 77777777664 7777888888776664432 0 0134557788
Q ss_pred eEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCC
Q 042509 706 RLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLG 785 (892)
Q Consensus 706 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~ 785 (892)
.|+++.|.+.. ++. +..+++|+.|++++|.++. +|. +..+++|+.|+|++|.+...+ .+.
T Consensus 155 ~L~l~~n~l~~----------------~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~ 214 (308)
T 1h6u_A 155 YLSIGNAQVSD----------------LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-PLA 214 (308)
T ss_dssp EEECCSSCCCC----------------CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-GGT
T ss_pred EEEccCCcCCC----------------Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc-ccc
Confidence 88888887742 222 6778899999999999887 654 778999999999999766544 488
Q ss_pred CCCCCCeEEEcceEEEEeCCc
Q 042509 786 KLPFLESLKIRNMNVKKVGDE 806 (892)
Q Consensus 786 ~l~~L~~L~L~~~~l~~~~~~ 806 (892)
.+++|+.|++++|.++..+..
T Consensus 215 ~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TCTTCCEEEEEEEEEECCCEE
T ss_pred CCCCCCEEEccCCeeecCCee
Confidence 899999999999998776543
No 71
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=2.4e-18 Score=150.13 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 042509 9 VLERLISTTVGEAEEQVRLVVGVEQDVEKLKRNFRAIQAVLVDAEQK--QVKEETVRLWLDQLKDASYDMEDVLDEWITA 86 (892)
Q Consensus 9 ~~~~~~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~lD~~~~~ 86 (892)
+++.+++||++++.+|+.++.||++++++|+++|++|++||.+|+.+ +..+++++.|+++||++|||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999987 5678999999999999999999999999987
Q ss_pred HH
Q 042509 87 RL 88 (892)
Q Consensus 87 ~~ 88 (892)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 73
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=3.2e-18 Score=183.09 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=178.4
Q ss_pred hcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCc
Q 042509 568 IENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRT 646 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~ 646 (892)
+..+++|++|+|++|.++.++ ..+.++++|++|++++|. +...+. +..+++|++|++++|.+..+|. +++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 456779999999999999776 579999999999999998 554544 8899999999888888877663 478888
Q ss_pred CCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhh
Q 042509 647 LSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEEN 726 (892)
Q Consensus 647 L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 726 (892)
|++..|.+.. +. ...+++|+.|++++|.+..
T Consensus 104 L~l~~n~l~~----------------------~~-----------------~~~~~~L~~L~l~~N~l~~---------- 134 (317)
T 3o53_A 104 LHAANNNISR----------------------VS-----------------CSRGQGKKNIYLANNKITM---------- 134 (317)
T ss_dssp EECCSSCCSE----------------------EE-----------------ECCCSSCEEEECCSSCCCS----------
T ss_pred EECCCCccCC----------------------cC-----------------ccccCCCCEEECCCCCCCC----------
Confidence 8877665432 11 1124679999999998852
Q ss_pred hccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh-hccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC
Q 042509 727 QANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV-SLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD 805 (892)
Q Consensus 727 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 805 (892)
..+..+..+++|+.|++++|.+....|..+. .+++|+.|+|++|.+... +....+++|++|+|++|.++.++.
T Consensus 135 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 135 -----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp -----GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECG
T ss_pred -----ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchh
Confidence 2233566678999999999999874455553 789999999999976554 555569999999999999988876
Q ss_pred cccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccC-cCCCcCCCCCcceE-E
Q 042509 806 EFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKL-KSLPNQLLQRTKLN-L 883 (892)
Q Consensus 806 ~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L-~~lp~~l~~l~~L~-L 883 (892)
.+ ..+++|+.|.+.+. .+..++ ..+..+++|+.|++++|+-. ..+|..+..+++|+ |
T Consensus 209 ~~------------~~l~~L~~L~L~~N-~l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 209 EF------------QSAAGVTWISLRNN-KLVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp GG------------GGGTTCSEEECTTS-CCCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred hh------------cccCcccEEECcCC-cccchh--------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 52 25678888888774 444433 34567899999999999543 26666777777777 6
Q ss_pred EEc
Q 042509 884 NIS 886 (892)
Q Consensus 884 ~i~ 886 (892)
++.
T Consensus 268 ~l~ 270 (317)
T 3o53_A 268 AKQ 270 (317)
T ss_dssp HHH
T ss_pred ECC
Confidence 665
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.5e-17 Score=174.16 Aligned_cols=217 Identities=18% Similarity=0.075 Sum_probs=150.7
Q ss_pred eCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccc
Q 042509 536 LGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLP 612 (892)
Q Consensus 536 ~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp 612 (892)
...+.++|..+. ++|++|+++++ +..++. .+.++++|++|++++|.++.++. .+.++++|++|++++|......|
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 334556665443 56888888775 555554 67888888888888888886664 57888888888888887444444
Q ss_pred hhhhccccCCeecccccccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChh
Q 042509 613 QEIGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVD 691 (892)
Q Consensus 613 ~~i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~ 691 (892)
..+.++++|++|.+++|.+..++. .++++++|++|++.+|......
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------------- 140 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------------------------------- 140 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---------------------------------
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---------------------------------
Confidence 678888888888777777776665 4778888888887766543200
Q ss_pred hhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCC-eEEEeeecCCCCCCchhhhccCCcEE
Q 042509 692 EAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLE-SLEIWEYKGKAVFENWIVSLNKLKKL 770 (892)
Q Consensus 692 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~p~~~~~l~~L~~L 770 (892)
.+..+..+++|+.|++++|.+.+.. ......+..++.|. +|++++|.+.. +|.......+|+.|
T Consensus 141 --l~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L 205 (276)
T 2z62_A 141 --LPEYFSNLTNLEHLDLSSNKIQSIY------------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKEL 205 (276)
T ss_dssp --CCGGGGGCTTCCEEECCSSCCCEEC------------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEE
T ss_pred --CchhhccCCCCCEEECCCCCCCcCC------------HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEE
Confidence 0123556678888888888875310 01112222334444 78999998887 66655555689999
Q ss_pred EEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 771 FLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 771 ~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
+|++|.+...++. +..+++|+.|+|++|++.+
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9999987766665 6889999999999988653
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.1e-17 Score=189.49 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=185.1
Q ss_pred ccChhhcCcC----CcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccccccc
Q 042509 563 EIPKEIENFM----YLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG 637 (892)
Q Consensus 563 ~lp~~i~~l~----~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~ 637 (892)
.+|..+..+. +|++|+|++|.++.+| ..++.+++|++|+|++|. +...+. ++.+++|++|++++|.+..+|..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCCC
Confidence 4555555444 8999999999999775 679999999999999998 544444 99999999998888888877743
Q ss_pred ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCch
Q 042509 638 IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEE 717 (892)
Q Consensus 638 i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 717 (892)
++|++|++++|.+.. +. ...+++|+.|++++|.+.+
T Consensus 99 ----~~L~~L~L~~N~l~~----------------------~~-----------------~~~l~~L~~L~L~~N~l~~- 134 (487)
T 3oja_A 99 ----PSIETLHAANNNISR----------------------VS-----------------CSRGQGKKNIYLANNKITM- 134 (487)
T ss_dssp ----TTCCEEECCSSCCCC----------------------EE-----------------ECCCSSCEEEECCSSCCCS-
T ss_pred ----CCcCEEECcCCcCCC----------------------CC-----------------ccccCCCCEEECCCCCCCC-
Confidence 788888887765543 11 0123679999999998862
Q ss_pred hhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhh-hccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEc
Q 042509 718 EEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIV-SLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIR 796 (892)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 796 (892)
..+..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+... +....+++|++|+|+
T Consensus 135 --------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 135 --------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLS 199 (487)
T ss_dssp --------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECC
T ss_pred --------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECC
Confidence 2344566789999999999999885677776 799999999999986655 556679999999999
Q ss_pred ceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccC-cCCCcCC
Q 042509 797 NMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKL-KSLPNQL 875 (892)
Q Consensus 797 ~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L-~~lp~~l 875 (892)
+|.++.+++.+ ..+++|+.|.+.+. .+..++ ..+..+++|+.|++++|+-. ..+|..+
T Consensus 200 ~N~l~~~~~~~------------~~l~~L~~L~Ls~N-~l~~lp--------~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 200 SNKLAFMGPEF------------QSAAGVTWISLRNN-KLVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp SSCCCEECGGG------------GGGTTCSEEECTTS-CCCEEC--------TTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred CCCCCCCCHhH------------cCCCCccEEEecCC-cCcccc--------hhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 99998887652 25678888888874 444333 34567899999999999544 2667777
Q ss_pred CCCcceE-EEEc
Q 042509 876 LQRTKLN-LNIS 886 (892)
Q Consensus 876 ~~l~~L~-L~i~ 886 (892)
..++.|+ +.+.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 7777777 6653
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2e-16 Score=166.19 Aligned_cols=182 Identities=19% Similarity=0.111 Sum_probs=112.9
Q ss_pred hhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCc
Q 042509 567 EIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRT 646 (892)
Q Consensus 567 ~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~ 646 (892)
.++++.+|++++++++.++.+|..+. .+|++|++++|......|..+.++++|++|.+++|.+..+|.. +.+++|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 36678888888888888888887764 6788888888884444456788888888887777777766653 56667777
Q ss_pred CCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhh
Q 042509 647 LSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEEN 726 (892)
Q Consensus 647 L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 726 (892)
|+++.|.+.. +. ..+..+++|+.|+++.|.+..
T Consensus 82 L~Ls~N~l~~------------------l~-------------------~~~~~l~~L~~L~l~~N~l~~---------- 114 (290)
T 1p9a_G 82 LDLSHNQLQS------------------LP-------------------LLGQTLPALTVLDVSFNRLTS---------- 114 (290)
T ss_dssp EECCSSCCSS------------------CC-------------------CCTTTCTTCCEEECCSSCCCC----------
T ss_pred EECCCCcCCc------------------Cc-------------------hhhccCCCCCEEECCCCcCcc----------
Confidence 7666554321 00 112334556666666665531
Q ss_pred hccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEe
Q 042509 727 QANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 727 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~ 803 (892)
..+..+..+++|++|++++|.++...+..+..+++|+.|+|++|.+...++. +..+++|++|+|++|.++.+
T Consensus 115 -----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 115 -----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp -----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -----cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 1123345556666666666666652223344566666666666655544443 45566666666666555433
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.5e-16 Score=167.12 Aligned_cols=200 Identities=19% Similarity=0.125 Sum_probs=119.5
Q ss_pred cCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCee
Q 042509 547 FKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYL 624 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 624 (892)
.++++++++++.++ +..+|..+. .+|++|+|++|.++.++ ..+.++++|++|++++|. ++.+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 34455555555542 444554442 45666666666665443 345666666666666655 4444442 556666666
Q ss_pred cccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCC
Q 042509 625 IYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNL 704 (892)
Q Consensus 625 ~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 704 (892)
++++|.+..+|..+..+++|++|+++.|.+.. +. ...+..+++|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~------------------l~------------------~~~~~~l~~L 126 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS------------------LP------------------LGALRGLGEL 126 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC------------------CC------------------SSTTTTCTTC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcc------------------cC------------------HHHHcCCCCC
Confidence 55566666666656666666666655554332 00 0123445666
Q ss_pred CeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCch-hhhccCCcEEEEeccCCCCcCCC
Q 042509 705 FRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENW-IVSLNKLKKLFLINCYNCEIMPP 783 (892)
Q Consensus 705 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~~~~ 783 (892)
+.|+|++|.+.. ..+..+..+++|+.|++++|.++. +|.. +..+++|+.|+|++|.+...++.
T Consensus 127 ~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 127 QELYLKGNELKT---------------LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CEEECTTSCCCC---------------CCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CEEECCCCCCCc---------------cChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 666666666531 112334567778888888888777 5543 45788888888888877766666
Q ss_pred CCCCCCCCeEEEcceEEEE
Q 042509 784 LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 784 l~~l~~L~~L~L~~~~l~~ 802 (892)
+..+++|+.|+|.+|++.+
T Consensus 191 ~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCCCSEEECCSCCBCC
T ss_pred hcccccCCeEEeCCCCccC
Confidence 7777888888888887543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.4e-16 Score=164.22 Aligned_cols=179 Identities=23% Similarity=0.230 Sum_probs=108.2
Q ss_pred CCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccchh-hhccccCCeeccccccccccccc-ccCCcCCCcCC
Q 042509 572 MYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLPQE-IGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLS 648 (892)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~ 648 (892)
.+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|.. +.++++|++|.+++|.+..+|.. +.++++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 345555665555555543 45555566666665555 3444433 35555666665555555555443 35556666665
Q ss_pred ceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhc
Q 042509 649 EFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQA 728 (892)
Q Consensus 649 l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 728 (892)
+.+|.+.. +. ...+..+++|+.|+|++|.+..
T Consensus 116 l~~n~l~~------------------~~------------------~~~~~~l~~L~~L~Ls~n~l~~------------ 147 (270)
T 2o6q_A 116 LDRNQLKS------------------LP------------------PRVFDSLTKLTYLSLGYNELQS------------ 147 (270)
T ss_dssp CCSSCCCC------------------CC------------------TTTTTTCTTCCEEECCSSCCCC------------
T ss_pred CCCCccCe------------------eC------------------HHHhCcCcCCCEEECCCCcCCc------------
Confidence 55443321 00 0123455677777777776641
Q ss_pred cHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 729 NQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 729 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
.....+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+...++. +..+++|+.|+|++|++.+
T Consensus 148 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 148 ---LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 1122356678888888888888773334567788888888888877666554 7788899999998887544
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.4e-16 Score=170.95 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=152.6
Q ss_pred eEEEecC-CccccChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccch-hhhccccCCee-cccc
Q 042509 553 RSLLIVG-PICEIPKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLPQ-EIGKLVNLRYL-IYND 628 (892)
Q Consensus 553 r~L~l~~-~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L-~~~~ 628 (892)
++++.++ ++.++|..+ ..++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|. .+.++++|+++ ..++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455554 356677665 3578999999999999986 489999999999999986676764 46889998887 7778
Q ss_pred cccccccc-cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 629 SYLHYLPR-GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 629 ~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
|.+..+|. .+.++++|++|++.+|.+.... + .. +....++..|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~-----~~------------------------------~~~~~~l~~l 133 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-D-----VH------------------------------KIHSLQKVLL 133 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-C-----CT------------------------------TCCBSSCEEE
T ss_pred CcccccCchhhhhccccccccccccccccCC-c-----hh------------------------------hcccchhhhh
Confidence 88888865 4788999999999988765410 0 00 0111233344
Q ss_pred EEEee-CCCchhhHhhhhhhhccHHHHh-hhCCCC-CCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC-C
Q 042509 708 ELWFN-NKEEEEEEESMEENQANQGAIS-EALRPP-PNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP-P 783 (892)
Q Consensus 708 ~L~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~ 783 (892)
++..+ .+. .++ ..+... ..++.|++++|.++. +|.......+|+.|.+.+|...+.+| .
T Consensus 134 ~l~~~~~i~----------------~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 134 DIQDNINIH----------------TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp EEESCTTCC----------------EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred hhccccccc----------------cccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHH
Confidence 44332 121 011 122222 356777777777776 66655556677777776544444333 2
Q ss_pred -CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeee
Q 042509 784 -LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEI 862 (892)
Q Consensus 784 -l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i 862 (892)
++.+++|++|+|++|.|+.++. ..|.+|++|...++.+++.++ .+..+++|+.+++
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~--------------~~~~~L~~L~~l~~~~l~~lP---------~l~~l~~L~~l~l 253 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPS--------------YGLENLKKLRARSTYNLKKLP---------TLEKLVALMEASL 253 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCS--------------SSCTTCCEEECTTCTTCCCCC---------CTTTCCSCCEEEC
T ss_pred HhccCcccchhhcCCCCcCccCh--------------hhhccchHhhhccCCCcCcCC---------CchhCcChhhCcC
Confidence 6777778888887777776652 356677777777776666554 2345677777776
Q ss_pred cc
Q 042509 863 IL 864 (892)
Q Consensus 863 ~~ 864 (892)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=4.1e-18 Score=199.76 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred hhccCCcEEEEeccCC--CC-cCCCC-CCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccc
Q 042509 762 VSLNKLKKLFLINCYN--CE-IMPPL-GKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWE 837 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~--~~-~~~~l-~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~ 837 (892)
..+++|+.|+|+.|.. .. .+..+ ..+++|++|+|++|.++..+...+ ...+++|+.|.+.++. +.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF----------SRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH----------HTCCTTCCEEEEESCC-CB
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH----------HhcCcccCeeeccCCC-Cc
Confidence 3455666666654331 11 11111 235666666666655432111000 1245677777777664 32
Q ss_pred ccccccccCcccccCcCCccceeeecccccCc
Q 042509 838 EWDFGITRSGKEEITIMPQLNSLEIILCAKLK 869 (892)
Q Consensus 838 ~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~ 869 (892)
... .......+|+|+.|++++|. ++
T Consensus 502 ~~~------~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 502 ERA------IAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHH------HHHHHHHCSSCCEEEEESCB-CC
T ss_pred HHH------HHHHHHhcCccCeeECcCCc-CC
Confidence 211 11122356777777777774 44
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=1.4e-15 Score=169.47 Aligned_cols=303 Identities=13% Similarity=0.038 Sum_probs=183.2
Q ss_pred CCCceecchhhHHHHHHHH-hcCCcccccceEEEEE--EecCCchHHHHHHHHhCChhhhcc-----cc-eeEEEEeCCC
Q 042509 167 DEDRVCGRDDEKNKLIRKL-LSESSEEQKAVQTISV--VGMGGIGKTTLAQMAYNDPDVRNH-----FK-IRMWVCVSDP 237 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~~~-----f~-~~~wv~~s~~ 237 (892)
.+..++||+.+++++.+++ ...........+.+.| +|++|+||||||+.+++. .... |. .++|+.+...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCC
Confidence 3467999999999999988 4211000012356666 999999999999999984 3321 22 3678887777
Q ss_pred CCHHHHHHHHHHhccCCCCC-CCCHHHHHHHHHHHhc--CCeEEEEEecCCCCC------cCChhhhhhhcCCC---C--
Q 042509 238 FDEFSVAKSIIEGLEGETSN-LGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDD------RTKWEPLNHCLMNG---Q-- 303 (892)
Q Consensus 238 ~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~------~~~~~~l~~~l~~~---~-- 303 (892)
.+...++..++.+++..... ..+.......+.+.+. +++++|||||+|.-. ...+..+...+... +
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 88899999999988654322 3345566677777664 789999999997522 12233333333221 2
Q ss_pred CCcEEEEEcCchhHHhhc--------cC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcC-----
Q 042509 304 CGSKILVTTRKETVSRMM--------ES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCK----- 369 (892)
Q Consensus 304 ~gs~iivTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~----- 369 (892)
....||+||+...+...+ .. ...+++.+++.++++++|...+....... .--.+..+.|++.|+
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTS
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccC
Confidence 345588888765432211 11 22399999999999999976542111100 111456778899999
Q ss_pred -CchHHHHHHhhhhc-----cC---CCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCCC--CCc
Q 042509 370 -GLPLAAKTIGSLLC-----FK---RTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFP--KDW 438 (892)
Q Consensus 370 -G~Plai~~~~~~l~-----~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~ 438 (892)
|.|..+..++.... .. -+.+.+......... ...+.-++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543221 01 123333333322100 22344567889999999999888754 233
Q ss_pred ccchHHHHHHHHHc--CCccCCCCchHHHHHHHHHHHHHhccCccccc
Q 042509 439 DIKKDELIKLWMAQ--GYITPKENKEMEIIGDEYFDYLATRSFFQDFV 484 (892)
Q Consensus 439 ~i~~~~li~~w~a~--g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 484 (892)
.+....+...|... ...... .........|+++|...+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVK--PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhCCCEEeec
Confidence 55556655554221 011111 111334567899999999997653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.6e-16 Score=162.39 Aligned_cols=205 Identities=18% Similarity=0.194 Sum_probs=128.7
Q ss_pred ccccChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccch-hhhccccCCeecccc-cccccccc-
Q 042509 561 ICEIPKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLPQ-EIGKLVNLRYLIYND-SYLHYLPR- 636 (892)
Q Consensus 561 ~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~~~~-~~l~~lp~- 636 (892)
+..+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|.+++ |.+..+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 344554 32 267777777777777665 577777788888877753555553 567777777776654 77776664
Q ss_pred cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEee-CCC
Q 042509 637 GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFN-NKE 715 (892)
Q Consensus 637 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~ 715 (892)
.+.++++|++|++.+|.... +..+.. +..++.|+.|+++.| .+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~---------lp~~~~--------------------------l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM---------FPDLTK--------------------------VYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS---------CCCCTT--------------------------CCBCCSEEEEEEESCTTCC
T ss_pred HhCCCCCCCEEeCCCCCCcc---------cccccc--------------------------ccccccccEEECCCCcchh
Confidence 36677778877777775542 000000 111122347777777 553
Q ss_pred chhhHhhhhhhhccHHHHhhhCCCCCCCC-eEEEeeecCCCCCCchhhhccCCcEEEEeccC-CCCcCCC-CCCC-CCCC
Q 042509 716 EEEEEESMEENQANQGAISEALRPPPNLE-SLEIWEYKGKAVFENWIVSLNKLKKLFLINCY-NCEIMPP-LGKL-PFLE 791 (892)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~~~~-l~~l-~~L~ 791 (892)
. .....+..+++|+ .|++++|.++. +|......++|+.|+|++|. +...++. +..+ ++|+
T Consensus 145 ~---------------i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 145 S---------------IPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp E---------------ECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred h---------------cCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 1 1123456677788 88888887775 66654444778888888884 5544443 6777 8888
Q ss_pred eEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccc
Q 042509 792 SLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKL 833 (892)
Q Consensus 792 ~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l 833 (892)
.|++++|.++.++. ..|++|+.|.+.+.
T Consensus 209 ~L~l~~N~l~~l~~--------------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 209 LLDVSQTSVTALPS--------------KGLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCCCCCCCC--------------TTCTTCSEEECTTC
T ss_pred EEECCCCccccCCh--------------hHhccCceeeccCc
Confidence 88888877665542 24667777766554
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.4e-16 Score=166.72 Aligned_cols=209 Identities=20% Similarity=0.215 Sum_probs=163.7
Q ss_pred CccccChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCCccccc-hhhhccccCCeeccccccccccc-c
Q 042509 560 PICEIPKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYLIYNDSYLHYLP-R 636 (892)
Q Consensus 560 ~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~~~~~~l~~lp-~ 636 (892)
++..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+.++++|++|.+++|.+..++ .
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 4567787664 579999999999998876 78999999999999998 55554 57899999999988888888776 4
Q ss_pred cccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCc
Q 042509 637 GIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEE 716 (892)
Q Consensus 637 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 716 (892)
.+.++++|++|++..|.... +. ...+..+++|+.|++++|.+..
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~------------------~~------------------~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLAS------------------LE------------------NFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCC------------------ST------------------TCCCTTCTTCCEEECCSSCCCC
T ss_pred hhcCCccccEEECCCCCccc------------------cC------------------chhcccCCCCCEEECcCCccce
Confidence 58899999999877665432 00 0125567899999999998752
Q ss_pred hhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCc----EEEEeccCCCCcCCCCCCCCCCCe
Q 042509 717 EEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLK----KLFLINCYNCEIMPPLGKLPFLES 792 (892)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~----~L~L~~~~~~~~~~~l~~l~~L~~ 792 (892)
..++..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+...++......+|++
T Consensus 139 --------------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 139 --------------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp --------------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred --------------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 12456777889999999999999884456777777777 899999988777777666679999
Q ss_pred EEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccc
Q 042509 793 LKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMK 832 (892)
Q Consensus 793 L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~ 832 (892)
|++++|.++.++...+ ..+++|+.|.+.+
T Consensus 205 L~L~~n~l~~~~~~~~-----------~~l~~L~~L~l~~ 233 (276)
T 2z62_A 205 LALDTNQLKSVPDGIF-----------DRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSSCCSCCCTTTT-----------TTCCSCCEEECCS
T ss_pred EECCCCceeecCHhHh-----------cccccccEEEccC
Confidence 9999999887765443 2577888888874
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=3e-16 Score=166.67 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=154.2
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
++++++|++.++.+..+| .+..+++|++|+++++ +..++. +.++++|++|++++|.++.+| .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 788999999999998887 7889999999999986 666766 999999999999999999886 689999999999999
Q ss_pred cCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
|. +..+|. +..+++|++|.+++|.+..+|. +.++++|+.|++..|.... +
T Consensus 117 n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~---------~------------------ 166 (308)
T 1h6u_A 117 TQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD---------L------------------ 166 (308)
T ss_dssp SC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC---------C------------------
T ss_pred CC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC---------C------------------
Confidence 98 677775 9999999999888888888876 8899999999987765432 0
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+ ++. +..+
T Consensus 167 -----------~~l~~l~~L~~L~l~~n~l~~----------------~~-~l~~l~~L~~L~L~~N~l~~-~~~-l~~l 216 (308)
T 1h6u_A 167 -----------TPLANLSKLTTLKADDNKISD----------------IS-PLASLPNLIEVHLKNNQISD-VSP-LANT 216 (308)
T ss_dssp -----------GGGTTCTTCCEEECCSSCCCC----------------CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTC
T ss_pred -----------hhhcCCCCCCEEECCCCccCc----------------Ch-hhcCCCCCCEEEccCCccCc-ccc-ccCC
Confidence 013455678888888877642 11 15567788888888888877 553 6778
Q ss_pred cCCcEEEEeccCCCC
Q 042509 765 NKLKKLFLINCYNCE 779 (892)
Q Consensus 765 ~~L~~L~L~~~~~~~ 779 (892)
++|+.|+|++|....
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 888888888886543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=7.2e-16 Score=157.50 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCCCCCeEEEeeecCCCCCCchhhhccCCc---EEEEecc-CCCCcCCC-CCCCCCCC-eEEEcceEEEEeCCcccCC
Q 042509 737 LRPPPNLESLEIWEYKGKAVFENWIVSLNKLK---KLFLINC-YNCEIMPP-LGKLPFLE-SLKIRNMNVKKVGDEFLGI 810 (892)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~---~L~L~~~-~~~~~~~~-l~~l~~L~-~L~L~~~~l~~~~~~~~~~ 810 (892)
+..+++|++|++++|.+++ +|. +..+++|+ .|++++| .+...++. +..+++|+ .|++++|.++.++...+.
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~- 177 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN- 177 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT-
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC-
Confidence 3445556666666666655 555 55555555 6666666 44444443 66677777 777777776666543321
Q ss_pred CCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcC-CccceeeecccccCcCCCcCCCCCcceE-EEEcCC
Q 042509 811 KSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIM-PQLNSLEIILCAKLKSLPNQLLQRTKLN-LNISLC 888 (892)
Q Consensus 811 ~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~l-p~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i~~c 888 (892)
. ++|+.|.+.+...++.++ ...+..+ ++|+.|++++| .++.+|.. .+++|+ |++++|
T Consensus 178 ----------~-~~L~~L~L~~n~~l~~i~-------~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 ----------G-TKLDAVYLNKNKYLTVID-------KDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ----------T-CEEEEEECTTCTTCCEEC-------TTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred ----------C-CCCCEEEcCCCCCcccCC-------HHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCc
Confidence 1 466666666543344332 2334456 78888888877 67777765 477777 888877
Q ss_pred CCC
Q 042509 889 PTL 891 (892)
Q Consensus 889 ~~l 891 (892)
+.|
T Consensus 237 ~~l 239 (239)
T 2xwt_C 237 WTL 239 (239)
T ss_dssp ---
T ss_pred cCC
Confidence 654
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=2.5e-19 Score=203.19 Aligned_cols=337 Identities=16% Similarity=0.109 Sum_probs=210.3
Q ss_pred cccceEEEEEeCCCCCcc--ccccCCCcceEEEecCC-cc-----ccChhhcCcCCcceEEcCCCCCCc-ccccc-cCCC
Q 042509 526 MEKLRHFMLVLGKSVAFP--VSIFKARKLRSLLIVGP-IC-----EIPKEIENFMYLRFLKLSKAEIVE-LPETC-CELF 595 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p--~~~~~~~~Lr~L~l~~~-~~-----~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i-~~L~ 595 (892)
++++++|+++++.+...+ ..+..+++|++|+++++ +. .++..+..+++|++|+|++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 567899999999886543 23678899999999985 33 457778899999999999999874 23333 3355
Q ss_pred ----CCCEEeccCcCCcc----ccchhhhccccCCeecccccccccc-c----cc-ccCCcCCCcCCceEeccCCCccCC
Q 042509 596 ----NLQTLEMEDCCNLK----RLPQEIGKLVNLRYLIYNDSYLHYL-P----RG-IERLTCLRTLSEFVVSRSGGKYGS 661 (892)
Q Consensus 596 ----~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~~~~~~l~~l-p----~~-i~~L~~L~~L~l~~~~~~~~~~~~ 661 (892)
+|++|++++|.... .+|..+.++++|++|++++|.+... + .. ....++|++|++..|.........
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999998442 5788899999999998888877532 1 12 223568999999888665311100
Q ss_pred CCCCcccccccccCCCceEEeccCCCCCh-hhhhhhccc-CCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCC
Q 042509 662 KASNLEGLRHLNHLRGFLAIVGLGNVKDV-DEAKNAELE-KKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRP 739 (892)
Q Consensus 662 ~~~~l~~L~~L~~L~~~l~i~~l~~~~~~-~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 739 (892)
....+ ..+..|+ .+.+.+.. +... .......+. ..++|+.|++++|.+... ....++..+..
T Consensus 162 l~~~l---~~~~~L~-~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----------~~~~l~~~l~~ 225 (461)
T 1z7x_W 162 LASVL---RAKPDFK-ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-----------NCRDLCGIVAS 225 (461)
T ss_dssp HHHHH---HHCTTCC-EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-----------HHHHHHHHHHH
T ss_pred HHHHH---hhCCCCC-EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-----------HHHHHHHHHHh
Confidence 01111 1222232 33333221 1110 011111121 356899999988887531 11235556667
Q ss_pred CCCCCeEEEeeecCCCCC-----CchhhhccCCcEEEEeccCCCCc-----CCCCCCCCCCCeEEEcceEEEEeCCcccC
Q 042509 740 PPNLESLEIWEYKGKAVF-----ENWIVSLNKLKKLFLINCYNCEI-----MPPLGKLPFLESLKIRNMNVKKVGDEFLG 809 (892)
Q Consensus 740 ~~~L~~L~L~~~~~~~~~-----p~~~~~l~~L~~L~L~~~~~~~~-----~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 809 (892)
+++|++|++++|.+...- +..+..+++|+.|+|++|.+... +..+..+++|++|++++|.++..+...+.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 788999999998765411 12222478899999998866542 22366688999999999876543322221
Q ss_pred CCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCC-CcCC----CC-CcceE-
Q 042509 810 IKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSL-PNQL----LQ-RTKLN- 882 (892)
Q Consensus 810 ~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~l----~~-l~~L~- 882 (892)
..- ....++|+.|.+.++. +..... ...+..+..+++|+.|++++| .++.. +..+ .. .++|+
T Consensus 306 ~~l------~~~~~~L~~L~L~~n~-l~~~~~---~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 306 ETL------LEPGCQLESLWVKSCS-FTAACC---SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHH------TSTTCCCCEEECTTSC-CBGGGH---HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHh------ccCCccceeeEcCCCC-CchHHH---HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEE
Confidence 000 1133689999988763 222110 001223345799999999999 56532 2222 21 67899
Q ss_pred EEEcCCC
Q 042509 883 LNISLCP 889 (892)
Q Consensus 883 L~i~~c~ 889 (892)
|++++|.
T Consensus 375 L~L~~n~ 381 (461)
T 1z7x_W 375 LWLADCD 381 (461)
T ss_dssp EECTTSC
T ss_pred EECCCCC
Confidence 9999985
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=8.9e-16 Score=159.94 Aligned_cols=195 Identities=24% Similarity=0.257 Sum_probs=156.8
Q ss_pred CcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccc-hhhhccccCCeecccccccccccccc-cCCcCCCcCCce
Q 042509 573 YLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYLIYNDSYLHYLPRGI-ERLTCLRTLSEF 650 (892)
Q Consensus 573 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~~~~~~l~~lp~~i-~~L~~L~~L~l~ 650 (892)
.+++++++++.++.+|..+. .+|++|++++|. +..+| ..+.++++|++|.+++|.+..+|.++ .++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57899999999999998765 689999999998 55665 47999999999988888999888774 789999999987
Q ss_pred EeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccH
Q 042509 651 VVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQ 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 730 (892)
.|.+.. +. ...+..+++|+.|++++|.+..
T Consensus 94 ~n~l~~------------------~~------------------~~~~~~l~~L~~L~l~~n~l~~-------------- 123 (270)
T 2o6q_A 94 DNKLQA------------------LP------------------IGVFDQLVNLAELRLDRNQLKS-------------- 123 (270)
T ss_dssp SSCCCC------------------CC------------------TTTTTTCSSCCEEECCSSCCCC--------------
T ss_pred CCcCCc------------------CC------------------HhHcccccCCCEEECCCCccCe--------------
Confidence 775432 00 0234567889999999998752
Q ss_pred HHHhhhCCCCCCCCeEEEeeecCCCCCCc-hhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCccc
Q 042509 731 GAISEALRPPPNLESLEIWEYKGKAVFEN-WIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFL 808 (892)
Q Consensus 731 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~ 808 (892)
..+..+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|.+...++. +..+++|++|+|++|.++.++...+
T Consensus 124 -~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 124 -LPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred -eCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 223456788999999999999998 554 477899999999999988777665 8899999999999999887765433
Q ss_pred CCCCCCCCCCCCCCCccceeecccc
Q 042509 809 GIKSNHSSGPAIAFPKLKHLKFMKL 833 (892)
Q Consensus 809 ~~~~n~~~~~~~~f~~L~~L~l~~l 833 (892)
..+++|+.|.+.+.
T Consensus 202 -----------~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 202 -----------DSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------TTCTTCCEEECCSS
T ss_pred -----------ccccCCCEEEecCC
Confidence 25678888888763
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=5.7e-16 Score=161.55 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=38.4
Q ss_pred CCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEE
Q 042509 737 LRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNV 800 (892)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l 800 (892)
+..+++|+.|++++|.+++..|..+..+++|+.|+|++|.+...++. ++.+++|++|++++|++
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 34556666666666666652333345666666666666665555444 56666777777666653
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=1.8e-14 Score=156.59 Aligned_cols=294 Identities=11% Similarity=0.067 Sum_probs=177.0
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC------CH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF------DE 240 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~~ 240 (892)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++. . . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 4567999999999999988541 58999999999999999999873 2 2 6777765432 55
Q ss_pred HHHHHHHHHhccC----------------CC--CCCCCHHHHHHHHHHHhcC-CeEEEEEecCCCCCc-------CChhh
Q 042509 241 FSVAKSIIEGLEG----------------ET--SNLGSLQSYLLRIYEAIAK-KKFLLVLDDVWNDDR-------TKWEP 294 (892)
Q Consensus 241 ~~~~~~i~~~l~~----------------~~--~~~~~~~~~~~~l~~~l~~-kr~LlVlDd~w~~~~-------~~~~~ 294 (892)
..+++.+.+.+.. .. ....+..++...+.+..+. ++.+|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666766665432 00 0123556666666665543 389999999965321 11222
Q ss_pred hhhhcCCCCCCcEEEEEcCchhH-Hhh----------ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHH
Q 042509 295 LNHCLMNGQCGSKILVTTRKETV-SRM----------MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGR 362 (892)
Q Consensus 295 l~~~l~~~~~gs~iivTtr~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 362 (892)
+...... ..+.++|+|++.... ... .+. ...+++.+|+.+|+.+++........... -.+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence 3222222 246789999887543 221 111 23789999999999999987542221111 135678
Q ss_pred HHHHhcCCchHHHHHHhhhhccCCCHHHHHH-hhhhccccccccccchhhHH-HhhhcCChHhHHHHHhhhcCCCCCccc
Q 042509 363 KIVHKCKGLPLAAKTIGSLLCFKRTEEEWQS-ILDSELWKVEEFENDLFGPL-LMSFNDLPSRIKRCFTFCAVFPKDWDI 440 (892)
Q Consensus 363 ~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cf~~~s~fp~~~~i 440 (892)
+|++.|+|+|+++..++..+....+...+.. +.+.. ...+...+ .+.+ . ++..+..+..+|. + .+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 8999999999999998875432222222211 11100 00011111 1122 2 6788889988887 2 23
Q ss_pred chHHHHHHHHHcCCccCCCCchHHHHHHHHHHHHHhccCcccccccCCCceeeEEecHHHHHHHH
Q 042509 441 KKDELIKLWMAQGYITPKENKEMEIIGDEYFDYLATRSFFQDFVKHGVNTVRKCKMHDVIHDFAQ 505 (892)
Q Consensus 441 ~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~dl~~ 505 (892)
+...+.....+. .- +. .......+++.|++.+++.... + .+.-.|++++++.+
T Consensus 297 ~~~~l~~~~~~~-~~----~~-~~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT----KI-PEPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-TC----CC-CHHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-hC----CC-CHHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHHc
Confidence 444444433221 10 11 1344567999999999997641 1 23345778887753
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=8.4e-16 Score=160.23 Aligned_cols=196 Identities=21% Similarity=0.240 Sum_probs=126.2
Q ss_pred ccCCCcceEEEecCCccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccc-hhhhccccCCee
Q 042509 546 IFKARKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYL 624 (892)
Q Consensus 546 ~~~~~~Lr~L~l~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L 624 (892)
...+++|+.|.+.++...-...++.+++|++|++++|.++.++ .+.++++|++|++++|. +..+| ..++++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 3445566666666542222234666777777777777766654 56677777777777776 34443 335677777777
Q ss_pred ccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCC
Q 042509 625 IYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKN 703 (892)
Q Consensus 625 ~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 703 (892)
.+++|.+..+|.. +.++++|++|++..|.+.. +. ...+..+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~------------------~~~~~~l~~ 158 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS------------------LP------------------KGVFDKLTN 158 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------CC------------------TTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCc------------------cC------------------HHHhccCcc
Confidence 6666666666554 5667777777766554332 00 012345667
Q ss_pred CCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC
Q 042509 704 LFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP 783 (892)
Q Consensus 704 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~ 783 (892)
|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|...
T Consensus 159 L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 218 (272)
T 3rfs_A 159 LTELDLSYNQLQS---------------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 218 (272)
T ss_dssp CCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-----
T ss_pred CCEEECCCCCcCc---------------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-----
Confidence 7888888777642 12234567788999999998888844555678899999999888543
Q ss_pred CCCCCCCCeEEEcceEE
Q 042509 784 LGKLPFLESLKIRNMNV 800 (892)
Q Consensus 784 l~~l~~L~~L~L~~~~l 800 (892)
+.+|+|+.|++..|.+
T Consensus 219 -~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 219 -CTCPGIRYLSEWINKH 234 (272)
T ss_dssp -CCTTTTHHHHHHHHHT
T ss_pred -ccCcHHHHHHHHHHhC
Confidence 4567788888877764
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=165.37 Aligned_cols=200 Identities=15% Similarity=0.064 Sum_probs=99.2
Q ss_pred CcceEEEecCC-cc-ccChhh--cCcCCcceEEcCCCCCCc-cc----ccccCCCCCCEEeccCcCCccccchhhhcccc
Q 042509 550 RKLRSLLIVGP-IC-EIPKEI--ENFMYLRFLKLSKAEIVE-LP----ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVN 620 (892)
Q Consensus 550 ~~Lr~L~l~~~-~~-~lp~~i--~~l~~L~~L~L~~~~i~~-lp----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 620 (892)
++|++|+++++ +. ..|..+ +++.+|++|+|++|.++. .| ..+..+++|++|++++|......|..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 44555555543 22 233433 555555555555555542 11 12334555555555555532333344555555
Q ss_pred CCeeccccccccc---cccc--ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhh
Q 042509 621 LRYLIYNDSYLHY---LPRG--IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKN 695 (892)
Q Consensus 621 L~~L~~~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~ 695 (892)
|++|++++|.+.. ++.. ++++++|++|++++|.+.. ......
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------------------------l~~~~~ 217 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET---------------------------------PTGVCA 217 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC---------------------------------HHHHHH
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc---------------------------------hHHHHH
Confidence 5555444444321 2111 2445555555544443211 000000
Q ss_pred hcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCC---CCCCCeEEEeeecCCCCCCchhhhccCCcEEEE
Q 042509 696 AELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRP---PPNLESLEIWEYKGKAVFENWIVSLNKLKKLFL 772 (892)
Q Consensus 696 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 772 (892)
..+..+++|++|+|++|.+.+ ..+..+.. +++|++|++++|.++. +|.++. ++|+.|+|
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~---------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRA---------------TVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDL 279 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCC---------------CCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEEC
T ss_pred HHHhcCCCCCEEECCCCCCCc---------------cchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEEC
Confidence 113445667777777766642 11222222 2577777777777765 666553 67777777
Q ss_pred eccCCCCcCCCCCCCCCCCeEEEcceEEE
Q 042509 773 INCYNCEIMPPLGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 773 ~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 801 (892)
++|.+... |.+..+++|+.|+|++|+++
T Consensus 280 s~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 77755443 33566677777777766543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.1e-16 Score=173.02 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=69.4
Q ss_pred cceEEEEEeCCCCCccccccCC--CcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCc--ccccccCCCCCCEEec
Q 042509 528 KLRHFMLVLGKSVAFPVSIFKA--RKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVE--LPETCCELFNLQTLEM 602 (892)
Q Consensus 528 ~lr~L~l~~~~~~~~p~~~~~~--~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L 602 (892)
..++++++++.+. |..+..+ ++++.|.+.++ +...+..+.++.+|++|++++|.++. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3566777666554 3344444 66666666654 33344445566666666666666552 5556666666666666
Q ss_pred cCcCCccccchhhhccccCCeeccccc-ccc--cccccccCCcCCCcCCceEe
Q 042509 603 EDCCNLKRLPQEIGKLVNLRYLIYNDS-YLH--YLPRGIERLTCLRTLSEFVV 652 (892)
Q Consensus 603 ~~~~~~~~lp~~i~~l~~L~~L~~~~~-~l~--~lp~~i~~L~~L~~L~l~~~ 652 (892)
++|......|..++++++|++|.+++| .+. .+|..+.++++|++|++.+|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 666643455566666666666644443 343 23444455555555554443
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.2e-17 Score=184.17 Aligned_cols=247 Identities=18% Similarity=0.134 Sum_probs=130.7
Q ss_pred CccccccCCCcceEEEecCC-cc-----ccChhhcCcCCcceEEcCCCCCC----cccccc-------cCCCCCCEEecc
Q 042509 541 AFPVSIFKARKLRSLLIVGP-IC-----EIPKEIENFMYLRFLKLSKAEIV----ELPETC-------CELFNLQTLEME 603 (892)
Q Consensus 541 ~~p~~~~~~~~Lr~L~l~~~-~~-----~lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~ 603 (892)
.++..+..+++|++|+++++ +. .++..+.++++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34445555566666666653 11 12233455666666666665433 223333 455666666666
Q ss_pred CcCCcc----ccchhhhccccCCeeccccccccc-----ccccccCC---------cCCCcCCceEeccCCCccCCCCCC
Q 042509 604 DCCNLK----RLPQEIGKLVNLRYLIYNDSYLHY-----LPRGIERL---------TCLRTLSEFVVSRSGGKYGSKASN 665 (892)
Q Consensus 604 ~~~~~~----~lp~~i~~l~~L~~L~~~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~ 665 (892)
+|.... .+|..+.++++|++|.+++|.+.. ++..+..+ ++|++|+++.|.+.....+.....
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 665322 255556666666666555554431 22223333 566666665555432111100001
Q ss_pred cccccccccCCCceEEeccCCCCCh--hhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCC
Q 042509 666 LEGLRHLNHLRGFLAIVGLGNVKDV--DEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNL 743 (892)
Q Consensus 666 l~~L~~L~~L~~~l~i~~l~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 743 (892)
+..+..|+ .+.+.++ .+... .......+..+++|+.|+|++|.+.. .....++..+..+++|
T Consensus 183 ---l~~~~~L~-~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-----------~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 183 ---FQSHRLLH-TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-----------LGSSALAIALKSWPNL 246 (386)
T ss_dssp ---HHHCTTCC-EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-----------HHHHHHHHHGGGCTTC
T ss_pred ---HHhCCCcC-EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-----------HHHHHHHHHHccCCCc
Confidence 11111222 2222221 11100 00111256677888888888887641 1113456667778888
Q ss_pred CeEEEeeecCCCC----CCchhhh--ccCCcEEEEeccCCCC----cCCC-C-CCCCCCCeEEEcceEEEEe
Q 042509 744 ESLEIWEYKGKAV----FENWIVS--LNKLKKLFLINCYNCE----IMPP-L-GKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 744 ~~L~L~~~~~~~~----~p~~~~~--l~~L~~L~L~~~~~~~----~~~~-l-~~l~~L~~L~L~~~~l~~~ 803 (892)
++|+|++|.++.. +|.++.. +++|+.|+|++|.+.. .+|. + .++++|++|++++|.++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 8888888887652 3455533 7888888888887665 2333 4 5578888888888876543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3e-16 Score=169.60 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=36.4
Q ss_pred CCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccc-cchhhhccccCCeecccccccc-cccccccCCcCCCcCCc
Q 042509 572 MYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKR-LPQEIGKLVNLRYLIYNDSYLH-YLPRGIERLTCLRTLSE 649 (892)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~~~~~~l~-~lp~~i~~L~~L~~L~l 649 (892)
.++++|++++|.+...+..+..+++|++|++++|..... +|..+..+++|++|.+++|.+. ..|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 445555555555444443444455555555555442212 4444455555555533333333 23334444555555544
Q ss_pred eE
Q 042509 650 FV 651 (892)
Q Consensus 650 ~~ 651 (892)
.+
T Consensus 150 ~~ 151 (336)
T 2ast_B 150 SG 151 (336)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=3.1e-15 Score=157.37 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=116.4
Q ss_pred hcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcC
Q 042509 568 IENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTL 647 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L 647 (892)
+..+.+|++|++++|.++.+|. +..+++|++|++++|. +..+|. +.++++|++|.+++|.+..+|. +.++++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3456667777777777666643 6667777777777766 455554 6677777777666666666543 6667777777
Q ss_pred CceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhh
Q 042509 648 SEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQ 727 (892)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 727 (892)
+++.|.+.. + ..+..+++|+.|++++|.+..
T Consensus 118 ~L~~n~i~~---------~-----------------------------~~l~~l~~L~~L~l~~n~l~~----------- 148 (291)
T 1h6t_A 118 SLEHNGISD---------I-----------------------------NGLVHLPQLESLYLGNNKITD----------- 148 (291)
T ss_dssp ECTTSCCCC---------C-----------------------------GGGGGCTTCCEEECCSSCCCC-----------
T ss_pred ECCCCcCCC---------C-----------------------------hhhcCCCCCCEEEccCCcCCc-----------
Confidence 665554322 0 113345677777777777642
Q ss_pred ccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeC
Q 042509 728 ANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVG 804 (892)
Q Consensus 728 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 804 (892)
+ ..+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+.. ++.+..+++|+.|++++|.++..+
T Consensus 149 -----~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 149 -----I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -----C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -----c-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCc
Confidence 1 345567788888888888777 554 6778888888888886544 455788888888888888876654
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=8.9e-16 Score=179.84 Aligned_cols=322 Identities=13% Similarity=0.033 Sum_probs=206.9
Q ss_pred ccccceEEEEEeCCCCC-----ccccccCCCcceEEEecCC-c-----cccChhhcCcCCcceEEcCCCCCCcccccccC
Q 042509 525 SMEKLRHFMLVLGKSVA-----FPVSIFKARKLRSLLIVGP-I-----CEIPKEIENFMYLRFLKLSKAEIVELPETCCE 593 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~-----~p~~~~~~~~Lr~L~l~~~-~-----~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 593 (892)
.++++++|++.+|.+.. ++.....+++|++|+++++ + ..++..+.++++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 36789999998886532 3334467889999999875 2 23455567889999999999988888888999
Q ss_pred CCCCCEEeccCcCCc---cccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCccccc
Q 042509 594 LFNLQTLEMEDCCNL---KRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLR 670 (892)
Q Consensus 594 L~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 670 (892)
+++|++|+++.+... ...+..+..+++|++|.+.......+|..+..+++|++|+++.|........ .-+.
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~------~~~~ 315 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC------TLIQ 315 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH------HHHT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHH------HHHH
Confidence 999999999864422 3344567788888888665555567777788889999999887764321110 1112
Q ss_pred ccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEe-----------eCCCchhhHhhhhhhhccHHHHhhhCCC
Q 042509 671 HLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWF-----------NNKEEEEEEESMEENQANQGAISEALRP 739 (892)
Q Consensus 671 ~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 739 (892)
.+.+|+ .+.+.. ++ .+.........+++|++|+++. +.++. ..+......
T Consensus 316 ~~~~L~-~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~--------------~~~~~l~~~ 376 (592)
T 3ogk_B 316 KCPNLE-VLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ--------------RGLIALAQG 376 (592)
T ss_dssp TCTTCC-EEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH--------------HHHHHHHHH
T ss_pred hCcCCC-EEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH--------------HHHHHHHhh
Confidence 223333 344431 11 1222233345678899999993 44431 222222334
Q ss_pred CCCCCeEEEeeecCCCCCCchhhh-ccCCcEEEEeccC---CCCcCC------C-CCCCCCCCeEEEcceE--EEEeCCc
Q 042509 740 PPNLESLEIWEYKGKAVFENWIVS-LNKLKKLFLINCY---NCEIMP------P-LGKLPFLESLKIRNMN--VKKVGDE 806 (892)
Q Consensus 740 ~~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~L~L~~~~---~~~~~~------~-l~~l~~L~~L~L~~~~--l~~~~~~ 806 (892)
+++|++|+++++.++...+..+.. +++|+.|+|++|. ..+..| . +..+++|++|+++.|. ++.....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 688999999888776544455554 8899999998432 222211 1 4458899999997543 3221111
Q ss_pred ccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCc--CCCcCCCCCcceE-E
Q 042509 807 FLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLK--SLPNQLLQRTKLN-L 883 (892)
Q Consensus 807 ~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~--~lp~~l~~l~~L~-L 883 (892)
.+ ...+++|+.|.+.++. +.... .......+++|++|+|++|+ ++ .++.....+++|+ |
T Consensus 457 ~~----------~~~~~~L~~L~L~~n~-l~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 457 YI----------GQYSPNVRWMLLGYVG-ESDEG------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp HH----------HHSCTTCCEEEECSCC-SSHHH------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred HH----------HHhCccceEeeccCCC-CCHHH------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 11 1246889999887652 32221 22233467999999999996 54 2454455688999 9
Q ss_pred EEcCCC
Q 042509 884 NISLCP 889 (892)
Q Consensus 884 ~i~~c~ 889 (892)
++++|+
T Consensus 519 ~ls~n~ 524 (592)
T 3ogk_B 519 WVQGYR 524 (592)
T ss_dssp EEESCB
T ss_pred ECcCCc
Confidence 999986
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1.5e-16 Score=186.68 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred cccceEEEEEeC-CCCC--ccccccCCCcceEEEecCCc-c-----ccChhhcCcCCcceEEcCCCC--CC--ccccccc
Q 042509 526 MEKLRHFMLVLG-KSVA--FPVSIFKARKLRSLLIVGPI-C-----EIPKEIENFMYLRFLKLSKAE--IV--ELPETCC 592 (892)
Q Consensus 526 ~~~lr~L~l~~~-~~~~--~p~~~~~~~~Lr~L~l~~~~-~-----~lp~~i~~l~~L~~L~L~~~~--i~--~lp~~i~ 592 (892)
++++++|++.++ .+.. ++.....+++|++|++.++. . .++.....+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 456777777766 3332 33334467777777777642 1 122223456677777777775 22 2333334
Q ss_pred CCCCCCEEeccCcCCccccchhhhccccCCeec
Q 042509 593 ELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLI 625 (892)
Q Consensus 593 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 625 (892)
++++|++|++++|..+..+|..+.++++|++|.
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 567777777777755556666677777777774
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=2.1e-13 Score=148.54 Aligned_cols=291 Identities=11% Similarity=0.080 Sum_probs=171.5
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-----CCHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-----FDEF 241 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~ 241 (892)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 44579999999999998 632 48999999999999999999873 322 2578887642 3445
Q ss_pred HHHHHHHHhccC--------------------CC---------CCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc---
Q 042509 242 SVAKSIIEGLEG--------------------ET---------SNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR--- 289 (892)
Q Consensus 242 ~~~~~i~~~l~~--------------------~~---------~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~--- 289 (892)
..+..+.+.+.. .. ........+...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555554443310 00 012344455555544322 499999999965321
Q ss_pred CChhhhhhhcCCCCCCcEEEEEcCchhH-Hhh---------c-cC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchH
Q 042509 290 TKWEPLNHCLMNGQCGSKILVTTRKETV-SRM---------M-ES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENL 357 (892)
Q Consensus 290 ~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 357 (892)
..|..+...+.....+.++|+|++.... ... . +. ...+++.+|+.+|+.+++........... ...
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--CcH
Confidence 2333332323222246789999997653 211 1 11 25789999999999999987542111111 111
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhhhccCCCHHHHHHh-hhhccccccccccchhhHHH-hhhc--CChHhHHHHHhhhcC
Q 042509 358 EEIGRKIVHKCKGLPLAAKTIGSLLCFKRTEEEWQSI-LDSELWKVEEFENDLFGPLL-MSFN--DLPSRIKRCFTFCAV 433 (892)
Q Consensus 358 ~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~s~ 433 (892)
.+|++.|+|+|+++..++..+....+...|..- .+.. ...+...+. +.+. .+|+..+..+..+|.
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 789999999999999998776433333333221 1100 000111111 2221 688899999999998
Q ss_pred CCCCcccchHHHHHHHH-HcCCccCCCCchHHHHHHHHHHHHHhccCcccccccCCCceeeEE-ecHHHHHHH
Q 042509 434 FPKDWDIKKDELIKLWM-AQGYITPKENKEMEIIGDEYFDYLATRSFFQDFVKHGVNTVRKCK-MHDVIHDFA 504 (892)
Q Consensus 434 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-~hdlv~dl~ 504 (892)
-+ +...+....- ..|. . . .......+++.|++.+++.... + .|. .|++++++.
T Consensus 302 g~-----~~~~l~~~~~~~~g~---~--~-~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 CG-----KWSDVKRALELEEGI---E--I-SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp CB-----CHHHHHHHHHHHHCS---C--C-CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred CC-----CHHHHHHHHHHhcCC---C--C-CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 3333332111 1121 0 1 1234567999999999997532 1 244 578888763
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=4.6e-15 Score=171.14 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=111.9
Q ss_pred hcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcC
Q 042509 568 IENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTL 647 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L 647 (892)
+..+.+|++|++++|.+..+| .+..|++|+.|+|++|. +..+|. +..+++|++|.++.|.+..+| .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 456667777777777777665 46677777777777776 555554 677777777766666666654 56667777777
Q ss_pred CceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhh
Q 042509 648 SEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQ 727 (892)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 727 (892)
+++.|.+.. + ..+..+++|+.|+|+.|.+..
T Consensus 115 ~Ls~N~l~~---------l-----------------------------~~l~~l~~L~~L~Ls~N~l~~----------- 145 (605)
T 1m9s_A 115 SLEHNGISD---------I-----------------------------NGLVHLPQLESLYLGNNKITD----------- 145 (605)
T ss_dssp ECTTSCCCC---------C-----------------------------GGGGGCTTCSEEECCSSCCCC-----------
T ss_pred EecCCCCCC---------C-----------------------------ccccCCCccCEEECCCCccCC-----------
Confidence 665554321 0 113345667777777766642
Q ss_pred ccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeC
Q 042509 728 ANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVG 804 (892)
Q Consensus 728 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 804 (892)
+ ..+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+...+
T Consensus 146 -----l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 146 -----I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -----C-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEEECCC
T ss_pred -----c-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcCcCCc
Confidence 1 345566777777777777766 443 6677777777777775543 355777777777777777765544
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.9e-14 Score=148.09 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=110.3
Q ss_pred CcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceE
Q 042509 573 YLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFV 651 (892)
Q Consensus 573 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~ 651 (892)
..++++++++.++.+|..+. .+|++|++++|......|..+.++++|++|.+++|.+..++.. +.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666665544 4566666666653333334456666666665555555555433 55666666666555
Q ss_pred eccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHH
Q 042509 652 VSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQG 731 (892)
Q Consensus 652 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 731 (892)
|.+.. +. ...+..+++|+.|+|++|.+..
T Consensus 93 n~l~~------------------~~------------------~~~~~~l~~L~~L~L~~N~l~~--------------- 121 (251)
T 3m19_A 93 NQLAS------------------LP------------------LGVFDHLTQLDKLYLGGNQLKS--------------- 121 (251)
T ss_dssp SCCCC------------------CC------------------TTTTTTCTTCCEEECCSSCCCC---------------
T ss_pred Ccccc------------------cC------------------hhHhcccCCCCEEEcCCCcCCC---------------
Confidence 43322 00 0123445667777777776642
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 732 AISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 732 ~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+...++. +..+++|++|+|++|++.+
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 1122356678888888888888873333677888899999998887766664 7888999999999888654
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=5.1e-15 Score=157.62 Aligned_cols=187 Identities=15% Similarity=0.079 Sum_probs=117.6
Q ss_pred CcCCcceEEcCCCCCC-cccccc--cCCCCCCEEeccCcCCccccc----hhhhccccCCeeccccccccccc-ccccCC
Q 042509 570 NFMYLRFLKLSKAEIV-ELPETC--CELFNLQTLEMEDCCNLKRLP----QEIGKLVNLRYLIYNDSYLHYLP-RGIERL 641 (892)
Q Consensus 570 ~l~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~~l~~L~~L~~~~~~l~~lp-~~i~~L 641 (892)
.+.+|++|++++|.+. ..|..+ .++++|++|++++|......| ..+..+++|++|.+++|.+..+| ..++++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3566888888888877 566666 788888888888887444333 34456788888877777776665 456777
Q ss_pred cCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHh
Q 042509 642 TCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEE 721 (892)
Q Consensus 642 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 721 (892)
++|++|++++|..... ..+ .....+..+++|++|+|++|.+...
T Consensus 169 ~~L~~L~Ls~N~l~~~------------~~~--------------------~~~~~~~~l~~L~~L~Ls~N~l~~l---- 212 (310)
T 4glp_A 169 PALTSLDLSDNPGLGE------------RGL--------------------MAALCPHKFPAIQNLALRNTGMETP---- 212 (310)
T ss_dssp TTCCEEECCSCTTCHH------------HHH--------------------HTTSCTTSSCCCCSCBCCSSCCCCH----
T ss_pred CCCCEEECCCCCCccc------------hhh--------------------hHHHhhhcCCCCCEEECCCCCCCch----
Confidence 7777777766643210 000 0001124556777777777776420
Q ss_pred hhhhhhccHHHHhhh-CCCCCCCCeEEEeeecCCCCCCchhhhc---cCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcc
Q 042509 722 SMEENQANQGAISEA-LRPPPNLESLEIWEYKGKAVFENWIVSL---NKLKKLFLINCYNCEIMPPLGKLPFLESLKIRN 797 (892)
Q Consensus 722 ~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~p~~~~~l---~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 797 (892)
...+.. +..+++|++|+|++|.+.+..|..+..+ ++|+.|+|++|.+...+..+. ++|++|+|++
T Consensus 213 ---------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 213 ---------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp ---------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred ---------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 111111 2455778888888888777446655544 577888887776664444343 6777777777
Q ss_pred eEEEEe
Q 042509 798 MNVKKV 803 (892)
Q Consensus 798 ~~l~~~ 803 (892)
|.++.+
T Consensus 282 N~l~~~ 287 (310)
T 4glp_A 282 NRLNRA 287 (310)
T ss_dssp CCCCSC
T ss_pred CcCCCC
Confidence 775543
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=8e-16 Score=169.57 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=175.7
Q ss_pred ccccceEEEEEeCCCCC-----ccccccCCCcceEEEecCCc-c----ccChh-------hcCcCCcceEEcCCCCCCc-
Q 042509 525 SMEKLRHFMLVLGKSVA-----FPVSIFKARKLRSLLIVGPI-C----EIPKE-------IENFMYLRFLKLSKAEIVE- 586 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~-----~p~~~~~~~~Lr~L~l~~~~-~----~lp~~-------i~~l~~L~~L~L~~~~i~~- 586 (892)
..+++++|++++|.+.. ++..+..+++|++|+++++. . .+|.. +.++++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 36789999999998754 34457789999999998741 1 33444 4789999999999999885
Q ss_pred ----ccccccCCCCCCEEeccCcCCcc----ccchhhhcc---------ccCCeecccccccc--ccc---ccccCCcCC
Q 042509 587 ----LPETCCELFNLQTLEMEDCCNLK----RLPQEIGKL---------VNLRYLIYNDSYLH--YLP---RGIERLTCL 644 (892)
Q Consensus 587 ----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l---------~~L~~L~~~~~~l~--~lp---~~i~~L~~L 644 (892)
+|..+.++++|++|+|++|.... .++..+..+ ++|++|.+++|.+. .+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 78889999999999999998432 234445555 89999988888775 444 467788999
Q ss_pred CcCCceEeccCCCccCCCCCCcc-cccccccCCCceEEeccCCCCC-hhhhhhhcccCCCCCCeEEEEeeCCCchhhHhh
Q 042509 645 RTLSEFVVSRSGGKYGSKASNLE-GLRHLNHLRGFLAIVGLGNVKD-VDEAKNAELEKKKNLFRLELWFNNKEEEEEEES 722 (892)
Q Consensus 645 ~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~~L~~~l~i~~l~~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 722 (892)
++|++..|.+....... .+. .+..+..|+ .+.+.+.. +.. ........+..+++|+.|+|++|.+...
T Consensus 190 ~~L~L~~n~l~~~g~~~---l~~~~l~~~~~L~-~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~----- 259 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEH---LLLEGLAYCQELK-VLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSAR----- 259 (386)
T ss_dssp CEEECCSSCCCHHHHHH---HHHTTGGGCTTCC-EEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH-----
T ss_pred CEEECcCCCCCHhHHHH---HHHHHhhcCCCcc-EEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchh-----
Confidence 99999988765210000 011 222233333 34433221 110 0133445678899999999999998631
Q ss_pred hhhhhccHHHHhhhC--CCCCCCCeEEEeeecCCC----CCCchh-hhccCCcEEEEeccCCCCcCC---CC-CCCCCCC
Q 042509 723 MEENQANQGAISEAL--RPPPNLESLEIWEYKGKA----VFENWI-VSLNKLKKLFLINCYNCEIMP---PL-GKLPFLE 791 (892)
Q Consensus 723 ~~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~----~~p~~~-~~l~~L~~L~L~~~~~~~~~~---~l-~~l~~L~ 791 (892)
....++..+ .++++|+.|+|++|.++. .+|.++ .++++|+.|+|++|.+....+ .+ ..+++++
T Consensus 260 ------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 260 ------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp ------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 112345566 448999999999999876 367777 568999999999998765543 11 2245555
Q ss_pred eEEEcc
Q 042509 792 SLKIRN 797 (892)
Q Consensus 792 ~L~L~~ 797 (892)
.+.+..
T Consensus 334 ~~~l~~ 339 (386)
T 2ca6_A 334 RGELDE 339 (386)
T ss_dssp CCEECC
T ss_pred cchhhh
Confidence 555543
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=6e-14 Score=151.98 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=163.9
Q ss_pred ceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccch-hhhccccCCeeccccccc-cccccc-ccCCcCCCcCCce-
Q 042509 575 RFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYL-HYLPRG-IERLTCLRTLSEF- 650 (892)
Q Consensus 575 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l-~~lp~~-i~~L~~L~~L~l~- 650 (892)
+.++.+++.++++|..+ ..+|++|+|++|. ++.+|. .|.++++|++|++++|.+ +.+|.+ +.++++|+++...
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888899999876 3689999999988 778875 578999999997777775 446554 5667666654322
Q ss_pred EeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccH
Q 042509 651 VVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQ 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 730 (892)
.|.+. .+ ....+..+++|+.|++++|.+..
T Consensus 89 ~N~l~----------------------~l--------------~~~~f~~l~~L~~L~l~~n~l~~-------------- 118 (350)
T 4ay9_X 89 ANNLL----------------------YI--------------NPEAFQNLPNLQYLLISNTGIKH-------------- 118 (350)
T ss_dssp ETTCC----------------------EE--------------CTTSBCCCTTCCEEEEEEECCSS--------------
T ss_pred CCccc----------------------cc--------------Cchhhhhcccccccccccccccc--------------
Confidence 22111 11 01346778899999999998752
Q ss_pred HHHhhhCCCCCCCCeEEEeee-cCCCCCC-chhhhc-cCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcce-EEEEeCCc
Q 042509 731 GAISEALRPPPNLESLEIWEY-KGKAVFE-NWIVSL-NKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNM-NVKKVGDE 806 (892)
Q Consensus 731 ~~~~~~l~~~~~L~~L~L~~~-~~~~~~p-~~~~~l-~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~-~l~~~~~~ 806 (892)
.....+....++..|++.++ .+.. +| ..+..+ ..++.|+|++|.+...++.....++|+.|.+.+| .++.++..
T Consensus 119 -~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 119 -LPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp -CCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred -CCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH
Confidence 11122334456778888764 4544 44 344444 4688999999988777766667788999999864 48777754
Q ss_pred ccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE-EEE
Q 042509 807 FLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN-LNI 885 (892)
Q Consensus 807 ~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~-L~i 885 (892)
.+. .+++|+.|++.+. .++.++ . ..+.+|++|.+.+|.+++.+|. +..+++|+ +++
T Consensus 197 ~f~-----------~l~~L~~LdLs~N-~l~~lp--------~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 197 VFH-----------GASGPVILDISRT-RIHSLP--------S--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp TTT-----------TEECCSEEECTTS-CCCCCC--------S--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred Hhc-----------cCcccchhhcCCC-CcCccC--------h--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 432 5677777777763 444443 1 2578899999999999999995 77899999 887
Q ss_pred cC
Q 042509 886 SL 887 (892)
Q Consensus 886 ~~ 887 (892)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=3.1e-14 Score=149.69 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=103.5
Q ss_pred cCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeec
Q 042509 547 FKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLI 625 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 625 (892)
..+++|++|+++++ +..++ .++.+++|++|++++|.++.++. +.++++|++|++++|. +..+|. +..+++|++|.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 34556666666654 33443 36666777777777777766665 6667777777777766 455543 66677777776
Q ss_pred ccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCC
Q 042509 626 YNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLF 705 (892)
Q Consensus 626 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 705 (892)
+++|.+..++ .+..+++|+.|+++.|.... + ..+..+++|+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~---------~-----------------------------~~l~~l~~L~ 159 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITD---------I-----------------------------TVLSRLTKLD 159 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCC---------C-----------------------------GGGGGCTTCS
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCc---------c-----------------------------hhhccCCCCC
Confidence 6666666653 46666777777665554322 0 1133445666
Q ss_pred eEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCC
Q 042509 706 RLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNC 778 (892)
Q Consensus 706 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 778 (892)
.|++++|.+.+ ++. +..+++|+.|++++|.++. +|. +..+++|+.|+|++|.+.
T Consensus 160 ~L~L~~N~l~~----------------~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 160 TLSLEDNQISD----------------IVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCC----------------CGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEE
T ss_pred EEEccCCcccc----------------chh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCccc
Confidence 77777666542 111 5566677777777777666 543 566777777777776543
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1.7e-15 Score=165.12 Aligned_cols=231 Identities=14% Similarity=0.033 Sum_probs=146.9
Q ss_pred EEEEeCCCCCc-cccccCCCcceEEEecCC-ccccC-----hhhcCcC-CcceEEcCCCCCCcc-cccccCC-----CCC
Q 042509 532 FMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEIP-----KEIENFM-YLRFLKLSKAEIVEL-PETCCEL-----FNL 597 (892)
Q Consensus 532 L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L 597 (892)
+.++.+.+... |..+...++|++|+++++ +...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34555665543 333344455888888875 44444 5567777 888888888888744 4455554 888
Q ss_pred CEEeccCcCCccccchhhhc----c-ccCCeeccccccccccccc-----ccC-CcCCCcCCceEeccCCCccCCCCCCc
Q 042509 598 QTLEMEDCCNLKRLPQEIGK----L-VNLRYLIYNDSYLHYLPRG-----IER-LTCLRTLSEFVVSRSGGKYGSKASNL 666 (892)
Q Consensus 598 ~~L~L~~~~~~~~lp~~i~~----l-~~L~~L~~~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~~~~~~~~~~~~l 666 (892)
++|++++|......+..+.. + ++|++|++++|.+...+.. +.. .++|++|++++|.+...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------- 153 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------- 153 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------
Confidence 88888888743444444443 3 7888887777777655432 333 25777777766544320
Q ss_pred ccccccccCCCceEEeccCCCCChhhhhhhcccCCC-CCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCC-CCCC
Q 042509 667 EGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKK-NLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPP-PNLE 744 (892)
Q Consensus 667 ~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~ 744 (892)
........+...+ +|+.|+|++|.+... ....+...+... ++|+
T Consensus 154 -----------------------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-----------~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 154 -----------------------SSDELIQILAAIPANVNSLNLRGNNLASK-----------NCAELAKFLASIPASVT 199 (362)
T ss_dssp -----------------------CHHHHHHHHHTSCTTCCEEECTTSCGGGS-----------CHHHHHHHHHTSCTTCC
T ss_pred -----------------------HHHHHHHHHhcCCccccEeeecCCCCchh-----------hHHHHHHHHHhCCCCCC
Confidence 0011223445555 899999999987521 112334444555 5899
Q ss_pred eEEEeeecCCCC----CCchhhh-ccCCcEEEEeccCCCCcCC-----CCCCCCCCCeEEEcceEEEEeCC
Q 042509 745 SLEIWEYKGKAV----FENWIVS-LNKLKKLFLINCYNCEIMP-----PLGKLPFLESLKIRNMNVKKVGD 805 (892)
Q Consensus 745 ~L~L~~~~~~~~----~p~~~~~-l~~L~~L~L~~~~~~~~~~-----~l~~l~~L~~L~L~~~~l~~~~~ 805 (892)
+|+|++|.+... ++..+.. .++|+.|+|++|.+....+ .+..+++|+.|+|++|.+..++.
T Consensus 200 ~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred EEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 999999987652 2334444 4589999999997665433 25778999999999998554443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=3.1e-14 Score=162.24 Aligned_cols=182 Identities=20% Similarity=0.189 Sum_probs=123.1
Q ss_pred cceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcC
Q 042509 528 KLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 528 ~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 606 (892)
+++.|++++|.+..+|..+. ++|++|++++| +..+| +.+.+|++|+|++|.|+.+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 67888888888877776553 67888888775 55666 456788888888888887777 555 78888888877
Q ss_pred CccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCC
Q 042509 607 NLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGN 686 (892)
Q Consensus 607 ~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~ 686 (892)
++.+|. .+++|++|.+++|.+..+|. .+++|++|++++|.+.. +.
T Consensus 132 -l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~------------------lp---------- 176 (571)
T 3cvr_A 132 -LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF------------------LP---------- 176 (571)
T ss_dssp -CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC------------------CC----------
T ss_pred -CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC------------------cc----------
Confidence 555776 57778888777777777776 46677777776664432 00
Q ss_pred CCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCC-----CCCCCeEEEeeecCCCCCCchh
Q 042509 687 VKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRP-----PPNLESLEIWEYKGKAVFENWI 761 (892)
Q Consensus 687 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~L~~L~L~~~~~~~~~p~~~ 761 (892)
. +. ++|+.|+|++|.+.. ++. +.. .+.|+.|+|++|.++. +|.++
T Consensus 177 ---------~-l~--~~L~~L~Ls~N~L~~----------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l 226 (571)
T 3cvr_A 177 ---------E-LP--ESLEALDVSTNLLES----------------LPA-VPVRNHHSEETEIFFRCRENRITH-IPENI 226 (571)
T ss_dssp ---------C-CC--TTCCEEECCSSCCSS----------------CCC-CC--------CCEEEECCSSCCCC-CCGGG
T ss_pred ---------h-hh--CCCCEEECcCCCCCc----------------hhh-HHHhhhcccccceEEecCCCccee-cCHHH
Confidence 0 11 467777777776641 222 211 1223888888888776 77777
Q ss_pred hhccCCcEEEEeccCCCCcCC
Q 042509 762 VSLNKLKKLFLINCYNCEIMP 782 (892)
Q Consensus 762 ~~l~~L~~L~L~~~~~~~~~~ 782 (892)
..+++|+.|+|++|.+....|
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCH
Confidence 778888888888877654433
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=3.3e-14 Score=162.03 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=135.6
Q ss_pred CcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccc
Q 042509 550 RKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYND 628 (892)
Q Consensus 550 ~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~ 628 (892)
.+|++|+++++ +..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. ++.+|. +.+ +|++|.+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 37888888874 666777663 78888888888888888 457888888888887 566877 655 888888888
Q ss_pred cccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEE
Q 042509 629 SYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLE 708 (892)
Q Consensus 629 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 708 (892)
|.+..+|. .+++|++|++++|.+.. +. . .+++|+.|+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~------------------lp-------------------~---~l~~L~~L~ 166 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM------------------LP-------------------E---LPTSLEVLS 166 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC------------------CC-------------------C---CCTTCCEEE
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc------------------CC-------------------C---cCCCcCEEE
Confidence 88888877 57788888877665432 00 0 236889999
Q ss_pred EEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCC-------cEEEEeccCCCCcC
Q 042509 709 LWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKL-------KKLFLINCYNCEIM 781 (892)
Q Consensus 709 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~~~~ 781 (892)
|++|.+.+ ++. +. ++|+.|+|++|.++. +|. +.. +| +.|+|++|.+...+
T Consensus 167 Ls~N~L~~----------------lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 167 VRNNQLTF----------------LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp CCSSCCSC----------------CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCCCC
T ss_pred CCCCCCCC----------------cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcceecC
Confidence 99998852 344 43 899999999999987 887 543 66 99999999887766
Q ss_pred CCCCCCCCCCeEEEcceEEEEe
Q 042509 782 PPLGKLPFLESLKIRNMNVKKV 803 (892)
Q Consensus 782 ~~l~~l~~L~~L~L~~~~l~~~ 803 (892)
+.+..+++|+.|+|++|.++..
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCc
Confidence 6688899999999999987543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.1e-14 Score=148.35 Aligned_cols=173 Identities=21% Similarity=0.156 Sum_probs=126.2
Q ss_pred CcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCc
Q 042509 570 NFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSE 649 (892)
Q Consensus 570 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l 649 (892)
.+.++..++++++.++.++ .+..+.+|++|++++|. +..+| .+..+++|++|.+++|.+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4556666777777777666 56677777777777776 56666 57777777777667777777766 777777777777
Q ss_pred eEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhcc
Q 042509 650 FVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQAN 729 (892)
Q Consensus 650 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 729 (892)
++|.+.. +. .+.. ++|+.|++++|.+.+
T Consensus 93 ~~N~l~~------------------l~--------------------~~~~-~~L~~L~L~~N~l~~------------- 120 (263)
T 1xeu_A 93 NRNRLKN------------------LN--------------------GIPS-ACLSRLFLDNNELRD------------- 120 (263)
T ss_dssp CSSCCSC------------------CT--------------------TCCC-SSCCEEECCSSCCSB-------------
T ss_pred CCCccCC------------------cC--------------------cccc-CcccEEEccCCccCC-------------
Confidence 6664432 00 0111 578888888888752
Q ss_pred HHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCC
Q 042509 730 QGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGD 805 (892)
Q Consensus 730 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 805 (892)
.+.+..+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+... +.+..+++|+.|++++|.+...+.
T Consensus 121 ----~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 121 ----TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ----ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 1346778899999999999888 65 678899999999999976655 678999999999999999876653
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.3e-14 Score=167.42 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=51.0
Q ss_pred cCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeec
Q 042509 547 FKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLI 625 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 625 (892)
..+++|+.|.+.++ +..+| .++.+++|++|+|++|.+..+|. +..+++|+.|+|++|. +..+| .+..+++|++|.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 34445555555443 33333 35555555555555555555544 5555555555555554 34443 355555555555
Q ss_pred ccccccccccccccCCcCCCcCCceEe
Q 042509 626 YNDSYLHYLPRGIERLTCLRTLSEFVV 652 (892)
Q Consensus 626 ~~~~~l~~lp~~i~~L~~L~~L~l~~~ 652 (892)
+++|.+..+| .+..|++|+.|+++.|
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCC
Confidence 5555555442 3555555555555444
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=1.3e-15 Score=178.48 Aligned_cols=129 Identities=19% Similarity=0.130 Sum_probs=75.6
Q ss_pred ccccceEEEEEeCCCCC-----ccccccCCCcceEEEecCCc-----cccChhhcCcCCcceEEcCCC-CCCcccccccC
Q 042509 525 SMEKLRHFMLVLGKSVA-----FPVSIFKARKLRSLLIVGPI-----CEIPKEIENFMYLRFLKLSKA-EIVELPETCCE 593 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~-----~p~~~~~~~~Lr~L~l~~~~-----~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~ 593 (892)
.++++++|++++|.+.. ++.....+++|++|+++++- ..++..+.++++|++|++++| .+..+|..+.+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 36778888888776433 22233467788888887753 122333456788888888887 35567777778
Q ss_pred CCCCCEEeccCcCC------ccccchhhhccccCCee-cccccccccccccccCCcCCCcCCceEec
Q 042509 594 LFNLQTLEMEDCCN------LKRLPQEIGKLVNLRYL-IYNDSYLHYLPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 594 L~~L~~L~L~~~~~------~~~lp~~i~~l~~L~~L-~~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 653 (892)
+++|++|+++.|.. +..++..+.++++|+.| .........+|..+..+++|++|++..|.
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 88888888665431 22344455555555555 33322222333333345555555555444
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=1.4e-13 Score=141.43 Aligned_cols=119 Identities=22% Similarity=0.265 Sum_probs=55.6
Q ss_pred ceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCc
Q 042509 529 LRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDC 605 (892)
Q Consensus 529 lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 605 (892)
.++++++++.+..+|..+. +++++|+++++ +..++ ..++++++|++|+|++|.++.++. .+.++++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4455555555555554433 34555555543 22322 234555555555555555554332 2445555555555555
Q ss_pred CCccccc-hhhhccccCCeeccccccccccccc-ccCCcCCCcCCce
Q 042509 606 CNLKRLP-QEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEF 650 (892)
Q Consensus 606 ~~~~~lp-~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~ 650 (892)
. +..+| ..+..+++|++|.+++|.+..+|.. +.++++|++|+++
T Consensus 94 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 94 Q-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred c-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 4 22332 3344455555554444444444433 2344444444433
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1e-13 Score=136.57 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=97.0
Q ss_pred cCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccc-ccccccCCcCCCcC
Q 042509 569 ENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHY-LPRGIERLTCLRTL 647 (892)
Q Consensus 569 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~-lp~~i~~L~~L~~L 647 (892)
+.+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|++|.+++|.+.. .|..+.+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG------- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence 56777888888888888777 67788888888888874 44443 46666666666555554432 2333333
Q ss_pred CceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhh
Q 042509 648 SEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQ 727 (892)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 727 (892)
+++|+.|++++|.+.
T Consensus 111 -----------------------------------------------------l~~L~~L~Ls~n~i~------------ 125 (197)
T 4ezg_A 111 -----------------------------------------------------LTSLTLLDISHSAHD------------ 125 (197)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSBCB------------
T ss_pred -----------------------------------------------------CCCCCEEEecCCccC------------
Confidence 345555555555553
Q ss_pred ccHHHHhhhCCCCCCCCeEEEeeec-CCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEE
Q 042509 728 ANQGAISEALRPPPNLESLEIWEYK-GKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 728 ~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 801 (892)
...+..+..+++|++|++++|. +.. +| .+..+++|+.|++++|.+.. ++.+..+++|++|++++|.+.
T Consensus 126 ---~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 126 ---DSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ---GGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC---
T ss_pred ---cHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccC
Confidence 2234445566777777777776 544 55 56677778888887776544 446777788888888887754
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=8.4e-15 Score=159.62 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=162.7
Q ss_pred cccceEEEEEeCCCCCcc-----ccccCCC-cceEEEecCC-cccc-ChhhcCc-----CCcceEEcCCCCCCccc-cc-
Q 042509 526 MEKLRHFMLVLGKSVAFP-----VSIFKAR-KLRSLLIVGP-ICEI-PKEIENF-----MYLRFLKLSKAEIVELP-ET- 590 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-----~~~~~~~-~Lr~L~l~~~-~~~l-p~~i~~l-----~~L~~L~L~~~~i~~lp-~~- 590 (892)
..++++|++++|.+...+ ..+..++ +|++|+++++ +... +..+..+ .+|++|+|++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 566999999999987765 4667788 9999999986 4333 4555554 99999999999998544 33
Q ss_pred ---ccCC-CCCCEEeccCcCCccccchhhh----c-cccCCeecccccccc-----cccccccCCc-CCCcCCceEeccC
Q 042509 591 ---CCEL-FNLQTLEMEDCCNLKRLPQEIG----K-LVNLRYLIYNDSYLH-----YLPRGIERLT-CLRTLSEFVVSRS 655 (892)
Q Consensus 591 ---i~~L-~~L~~L~L~~~~~~~~lp~~i~----~-l~~L~~L~~~~~~l~-----~lp~~i~~L~-~L~~L~l~~~~~~ 655 (892)
+..+ ++|++|++++|......+..+. . .++|++|++++|.+. .++..+..++ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4455 8999999999994333334443 3 369999988888877 4455556665 8999988777554
Q ss_pred CCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCC-CCCCeEEEEeeCCCchhhHhhhhhhhccHHHHh
Q 042509 656 GGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKK-KNLFRLELWFNNKEEEEEEESMEENQANQGAIS 734 (892)
Q Consensus 656 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (892)
.. .. ......+... ++|+.|+|++|.+.. .....++
T Consensus 181 ~~-------~~-------------------------~~l~~~l~~~~~~L~~L~Ls~N~i~~-----------~~~~~l~ 217 (362)
T 3goz_A 181 SK-------NC-------------------------AELAKFLASIPASVTSLDLSANLLGL-----------KSYAELA 217 (362)
T ss_dssp GS-------CH-------------------------HHHHHHHHTSCTTCCEEECTTSCGGG-----------SCHHHHH
T ss_pred hh-------hH-------------------------HHHHHHHHhCCCCCCEEECCCCCCCh-----------hHHHHHH
Confidence 30 00 1111234445 489999999988752 1123345
Q ss_pred hhCCC-CCCCCeEEEeeecCCCCCCc----hhhhccCCcEEEEeccCCCCc--------CCCCCCCCCCCeEEEcceEEE
Q 042509 735 EALRP-PPNLESLEIWEYKGKAVFEN----WIVSLNKLKKLFLINCYNCEI--------MPPLGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 735 ~~l~~-~~~L~~L~L~~~~~~~~~p~----~~~~l~~L~~L~L~~~~~~~~--------~~~l~~l~~L~~L~L~~~~l~ 801 (892)
..+.. +++|++|+|++|.+...-+. .+..+++|+.|+|++|..... ...+..+++|+.|++++|.+.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 55544 46899999999998772222 234678999999999863221 224678889999999998854
Q ss_pred E
Q 042509 802 K 802 (892)
Q Consensus 802 ~ 802 (892)
.
T Consensus 298 ~ 298 (362)
T 3goz_A 298 P 298 (362)
T ss_dssp G
T ss_pred C
Confidence 3
No 113
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.9e-11 Score=134.38 Aligned_cols=295 Identities=12% Similarity=0.031 Sum_probs=180.0
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc--------cceeEEEEeCCCC-
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH--------FKIRMWVCVSDPF- 238 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~s~~~- 238 (892)
+..++||+.+++++.+++..... ....+.+.|+|++|+||||||+.+++. .... ....+|+++....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCC
Confidence 36799999999999988764211 123468999999999999999999984 3221 2356788877766
Q ss_pred CHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhh-hhhcCCCCCCcEEEEEcCch
Q 042509 239 DEFSVAKSIIEGLEGETS--NLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPL-NHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 239 ~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~ 315 (892)
+...++..++.++.+... ...........+.+.+..++.+|||||++.-....+... ...+.....+..||+||+..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 888899999888843321 223446677778888877766999999964322221222 22232222677899998865
Q ss_pred hHH----hhc-cC-CceEeCCCCCHHHHHHHHHHHhhC-CCCCCCCchHHHHHHHHHHhcC---CchH-HHHHHhhhh--
Q 042509 316 TVS----RMM-ES-TNVMFIEELSESECWRLFQQLAFF-GRSPSECENLEEIGRKIVHKCK---GLPL-AAKTIGSLL-- 382 (892)
Q Consensus 316 ~v~----~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---G~Pl-ai~~~~~~l-- 382 (892)
... ... .. ...+++.+++.++..+++...+.. -...... .+..+.|++.++ |.|. |+..+-.+.
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 321 111 11 238999999999999999987531 1111111 234566777777 9887 333332222
Q ss_pred c---cCCCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCCCCCcccchHHHHHHHHHcCCccCCC
Q 042509 383 C---FKRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFPKDWDIKKDELIKLWMAQGYITPKE 459 (892)
Q Consensus 383 ~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~ 459 (892)
. ..-+.+.+..++.... ...+.-++..|+++.+..+..++....+-.+. +.....--..| +..
T Consensus 252 a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-- 317 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-- 317 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC--
T ss_pred hcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC--
Confidence 1 1235666666655421 13456677889988888777776611101111 11111111223 111
Q ss_pred CchHHHHHHHHHHHHHhccCcccccc
Q 042509 460 NKEMEIIGDEYFDYLATRSFFQDFVK 485 (892)
Q Consensus 460 ~~~~e~~~~~~~~~L~~~~ll~~~~~ 485 (892)
........++..|..++++.....
T Consensus 318 --~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 --LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp --CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred --CCHHHHHHHHHHHHhCCCEEEEec
Confidence 123445678999999999987543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=4.2e-13 Score=132.23 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=112.3
Q ss_pred ccccceEEEEEeCCCCCccccccCCCcceEEEecCCccccChhhcCcCCcceEEcCCCCCCc-ccccccCCCCCCEEecc
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGPICEIPKEIENFMYLRFLKLSKAEIVE-LPETCCELFNLQTLEME 603 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~ 603 (892)
.++++++|++++|.+..+| .+..+++|++|+++++....+..+..+++|++|++++|.++. .|..++.+++|++|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4788999999999999888 789999999999999855555678999999999999999984 78889999999999999
Q ss_pred CcCCccccchhhhccccCCeecccccc-cccccccccCCcCCCcCCceEeccC
Q 042509 604 DCCNLKRLPQEIGKLVNLRYLIYNDSY-LHYLPRGIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 604 ~~~~~~~lp~~i~~l~~L~~L~~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~ 655 (892)
+|......|..++++++|++|.+++|. +..+| .+..+++|++|++..|...
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 999656688899999999999877776 88887 6889999999988776543
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=1.1e-11 Score=136.71 Aligned_cols=299 Identities=14% Similarity=0.064 Sum_probs=185.0
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc-ceeEEEEeCCCCCHHHHHHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF-KIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 246 (892)
++.++||+.+++++.+++...........+.+.|+|++|+||||||+.+++ ...... ..++|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 367999999999999988652110111234899999999999999999988 333321 34678888888888899999
Q ss_pred HHHhccCCCCC-CCCHHHHHHHHHHHhc--CCeEEEEEecCCCCCcCChhhhhhhcCCCC----CCcEEEEEcCchhHHh
Q 042509 247 IIEGLEGETSN-LGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ----CGSKILVTTRKETVSR 319 (892)
Q Consensus 247 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~ 319 (892)
++..++..... ..........+.+.+. +++.+||||+++..+......+...+.... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99888654322 2345666666666663 668999999997654445555555553321 3667888877654332
Q ss_pred hcc-------CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhc---------CCchHHHHHHhhhhc
Q 042509 320 MME-------STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKC---------KGLPLAAKTIGSLLC 383 (892)
Q Consensus 320 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~G~Plai~~~~~~l~ 383 (892)
.+. ....+.+.+++.++..+++...+....... .--.+..+.|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 123699999999999999988753211000 11245667888888 798865544433221
Q ss_pred ------c--CCCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCCC---CCcccchHHHHHHHHH-
Q 042509 384 ------F--KRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFP---KDWDIKKDELIKLWMA- 451 (892)
Q Consensus 384 ------~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a- 451 (892)
. .-+.+....+..... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 112333333222211 11122345668888888877777654 2224555666555433
Q ss_pred ---cCCccCCCCchHHHHHHHHHHHHHhccCcccccc
Q 042509 452 ---QGYITPKENKEMEIIGDEYFDYLATRSFFQDFVK 485 (892)
Q Consensus 452 ---~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 485 (892)
.|... . .......++++|..++++.....
T Consensus 322 ~~~~~~~~----~-~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP----R-VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC----C-CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC----C-CHHHHHHHHHHHHhCCCeEEeee
Confidence 23111 1 12345679999999999987543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=5.6e-16 Score=177.75 Aligned_cols=38 Identities=24% Similarity=0.012 Sum_probs=29.2
Q ss_pred cCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcC
Q 042509 569 ENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 569 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 606 (892)
..+++|+.|+|++|.++.+|..+++|.+|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 45777888888888888888888888888888876654
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=2.2e-11 Score=134.13 Aligned_cols=295 Identities=12% Similarity=0.037 Sum_probs=179.2
Q ss_pred CCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc------cceeEEEEeCCCCCHH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH------FKIRMWVCVSDPFDEF 241 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~ 241 (892)
++.++||+.+++.+..++..... ....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 46799999999999998854311 123568999999999999999999984 3221 1246788888888889
Q ss_pred HHHHHHHHhccCCCCC-CCCHHHHHHHHHHHh--cCCeEEEEEecCCCCCcC--ChhhhhhhcC---CC--CCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSN-LGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDDRT--KWEPLNHCLM---NG--QCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~~~--~~~~l~~~l~---~~--~~gs~iivT 311 (892)
.++..++.+++..... ..+..+....+.+.+ .+++.+|||||++.-... ..+.+...+. .. ..+..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999988654322 234566677777777 456899999999643221 1222322222 11 345678888
Q ss_pred cCchhHHhh-----ccCC--ceEeCCCCCHHHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHHhcC---CchHHHH-HHh
Q 042509 312 TRKETVSRM-----MEST--NVMFIEELSESECWRLFQQLAFFG-RSPSECENLEEIGRKIVHKCK---GLPLAAK-TIG 379 (892)
Q Consensus 312 tr~~~v~~~-----~~~~--~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---G~Plai~-~~~ 379 (892)
|+....... .... ..+.+.+++.++..+++.+.+... ...... .+..+.|++.++ |.|..+. .+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 876522111 1112 478899999999999998875320 111111 234556777777 9994333 222
Q ss_pred hhhc-----c--CCCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhc-CCCCCcccchHHHHHHHH-
Q 042509 380 SLLC-----F--KRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCA-VFPKDWDIKKDELIKLWM- 450 (892)
Q Consensus 380 ~~l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~- 450 (892)
.+.. . .-+.+.+..++... ....+.-++..||.+.+..+..++ ++-..-.+....+.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2211 1 12455565555432 112345567889988877766665 343222444454433322
Q ss_pred ---HcCCccCCCCchHHHHHHHHHHHHHhccCccccc
Q 042509 451 ---AQGYITPKENKEMEIIGDEYFDYLATRSFFQDFV 484 (892)
Q Consensus 451 ---a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 484 (892)
..| +.+ .....+..+++.|...+++....
T Consensus 321 ~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 223 111 12345677999999999998754
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=5.1e-13 Score=133.00 Aligned_cols=176 Identities=22% Similarity=0.274 Sum_probs=113.1
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCC 606 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 606 (892)
+.+....+.+..+|..+ .++|++|+++++ +..++. .++++.+|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34555566666666444 357777777775 445544 357778888888888887777654 5677888888888777
Q ss_pred Cccccch-hhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEecc
Q 042509 607 NLKRLPQ-EIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGL 684 (892)
Q Consensus 607 ~~~~lp~-~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l 684 (892)
+..+|. .+.++++|++|.+++|.+..+|.. +.++++|++|++..|.+.. +.
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------~~-------- 140 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------VP-------- 140 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------CC--------
T ss_pred -CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce------------------eC--------
Confidence 445544 357778888887777777776655 5677777777766654332 00
Q ss_pred CCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhc
Q 042509 685 GNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSL 764 (892)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l 764 (892)
...+..+++|+.|+++.|.+. ..+++|+.|+++.|.+++.+|.+++.+
T Consensus 141 ----------~~~~~~l~~L~~L~l~~N~~~----------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 141 ----------DGVFDRLTSLQYIWLHDNPWD----------------------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----------TTTTTTCTTCCEEECCSCCBC----------------------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----------HHHhccCCCccEEEecCCCee----------------------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 012344567777777766542 234567777777777776677766654
Q ss_pred cC
Q 042509 765 NK 766 (892)
Q Consensus 765 ~~ 766 (892)
+.
T Consensus 189 ~~ 190 (208)
T 2o6s_A 189 AP 190 (208)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=2.5e-13 Score=140.25 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=29.5
Q ss_pred hcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccccc
Q 042509 568 IENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLP 635 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp 635 (892)
+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +.++++|++|.+++|.+..+|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCccCCcC
Confidence 344444444444444444444 34444444444444444 333333 444444444444444444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.1e-14 Score=167.14 Aligned_cols=191 Identities=18% Similarity=0.137 Sum_probs=112.8
Q ss_pred cCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCC-CCcccccccCCCCCCEEeccCcCCccccchhhhccccCCee
Q 042509 547 FKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAE-IVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYL 624 (892)
Q Consensus 547 ~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 624 (892)
..+++|+.|+++++ +..+|..|++|.+|+.|++++|. +..+|..+ ..+...+..|..++.+++|++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 56788888888875 67889999999999999997664 22222111 1111233445555566666655
Q ss_pred c-ccccccccccc------cccCC--cCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhh
Q 042509 625 I-YNDSYLHYLPR------GIERL--TCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKN 695 (892)
Q Consensus 625 ~-~~~~~l~~lp~------~i~~L--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~ 695 (892)
+ +++|.+..++. .+..+ ..|+.|++++|.+.. +
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~----------------------l---------------- 456 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----------------------L---------------- 456 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS----------------------C----------------
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC----------------------C----------------
Confidence 3 44443322221 01110 135555544443221 0
Q ss_pred hcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEecc
Q 042509 696 AELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINC 775 (892)
Q Consensus 696 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~ 775 (892)
..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|
T Consensus 457 p~~~~l~~L~~L~Ls~N~l~----------------~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 457 CHLEQLLLVTHLDLSHNRLR----------------ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CCGGGGTTCCEEECCSSCCC----------------CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred cCccccccCcEeecCccccc----------------ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 01334566777777777663 245556667777777777777776 66 6667777777777777
Q ss_pred CCCCc--CCCCCCCCCCCeEEEcceEEEEeC
Q 042509 776 YNCEI--MPPLGKLPFLESLKIRNMNVKKVG 804 (892)
Q Consensus 776 ~~~~~--~~~l~~l~~L~~L~L~~~~l~~~~ 804 (892)
.+... ++.++.+++|+.|+|++|.++.++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 66655 334777777777777777765544
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.5e-13 Score=162.75 Aligned_cols=155 Identities=21% Similarity=0.124 Sum_probs=90.1
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecC-----C-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCE
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVG-----P-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQT 599 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~-----~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 599 (892)
...++++++..+.+...+..+.....|+.+.+.. + +...|..+..+.+|++|+|++|.+..+|..+.++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 4567888888888777766665556666655443 2 334466788889999999999999999988889999999
Q ss_pred EeccCcCCccccchhhhccccCCeecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCce
Q 042509 600 LEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFL 679 (892)
Q Consensus 600 L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 679 (892)
|+|++|. +..+|..+++|++|++|++++|.+..+|..+++|++|++|++++|.+.. +.
T Consensus 252 L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------------------lp--- 309 (727)
T 4b8c_D 252 LYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT------------------LP--- 309 (727)
T ss_dssp CBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC------------------CC---
T ss_pred EEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc------------------cC---
Confidence 9999988 6688988999999999988888888899889999999999887775432 00
Q ss_pred EEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchh
Q 042509 680 AIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEE 718 (892)
Q Consensus 680 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 718 (892)
..+..+++|+.|+|+.|.+.+..
T Consensus 310 ----------------~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 310 ----------------WEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp ----------------SSTTSCTTCCCEECTTSCCCSHH
T ss_pred ----------------hhhhcCCCccEEeCCCCccCCCC
Confidence 12455677888888888876533
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.6e-11 Score=133.46 Aligned_cols=296 Identities=13% Similarity=0.104 Sum_probs=176.1
Q ss_pred CCCceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc---ceeEEEEeCCCCCHHHH
Q 042509 167 DEDRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF---KIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~ 243 (892)
.+..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++ .....+ ...+|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998874211 12356899999999999999999998 343332 24678887776778888
Q ss_pred HHHHHHhccCCCC-CCCCHHHHHHHHHHHhc--CCeEEEEEecCCCCC----cCChhhhhhhcCC-CCCCcEEEEEcCch
Q 042509 244 AKSIIEGLEGETS-NLGSLQSYLLRIYEAIA--KKKFLLVLDDVWNDD----RTKWEPLNHCLMN-GQCGSKILVTTRKE 315 (892)
Q Consensus 244 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDd~w~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~ 315 (892)
+..++.+++.... ...+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888888754332 22345666666766664 458999999996421 2233334333322 23355677788765
Q ss_pred hHHhhc-----cC--CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcC---CchHHHHHHhhhhc--
Q 042509 316 TVSRMM-----ES--TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCK---GLPLAAKTIGSLLC-- 383 (892)
Q Consensus 316 ~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~Plai~~~~~~l~-- 383 (892)
.....+ .. ...+++.+++.++..+++.+.+...... ..-..++.+.|++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 432221 11 1479999999999999998864311100 0112455667777777 99984443322211
Q ss_pred ----c--CCCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhcCCCC-C-cccchHHHHHHHH--H--
Q 042509 384 ----F--KRTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCAVFPK-D-WDIKKDELIKLWM--A-- 451 (892)
Q Consensus 384 ----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w~--a-- 451 (892)
. .-+.+.+..+.... ....+.-.+..+|...+..+..++..-+ + ..+....+.+... +
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 12445555444331 1124555677888887777766663211 1 1233333322221 1
Q ss_pred cCCccCCCCchHHHHHHHHHHHHHhccCcccc
Q 042509 452 QGYITPKENKEMEIIGDEYFDYLATRSFFQDF 483 (892)
Q Consensus 452 ~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~ 483 (892)
.| +.+ ........+++.|...+++...
T Consensus 322 ~g-~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 12 111 1123456789999999999764
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.1e-12 Score=123.64 Aligned_cols=129 Identities=20% Similarity=0.169 Sum_probs=114.0
Q ss_pred cccceEEEEEeCCCC--CccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCc-ccccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSV--AFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVE-LPETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~--~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 601 (892)
++++++|++++|.+. .+|..+..+++|++|+++++ +..+ ..++.+++|++|++++|.++. +|..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 688999999999987 88888899999999999986 5555 778999999999999999997 777788899999999
Q ss_pred ccCcCCccccc--hhhhccccCCeecccccccccccc----cccCCcCCCcCCceEeccCC
Q 042509 602 MEDCCNLKRLP--QEIGKLVNLRYLIYNDSYLHYLPR----GIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 602 L~~~~~~~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~ 656 (892)
+++|. +..+| ..+..+++|++|.+++|.+..+|. .+..+++|++|++..|....
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99998 77766 789999999999888899998887 68899999999999987653
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=5.2e-12 Score=127.50 Aligned_cols=150 Identities=21% Similarity=0.096 Sum_probs=98.5
Q ss_pred cceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEe
Q 042509 574 LRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVV 652 (892)
Q Consensus 574 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 652 (892)
.+.++.+++.++.+|..+. .+|++|++++|......|..+.++++|++|.+++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5567777777887777654 7788888888774444466677777777776666666665543 345555555554443
Q ss_pred ccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHH
Q 042509 653 SRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGA 732 (892)
Q Consensus 653 ~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 732 (892)
.+.. .
T Consensus 99 ------------------------------------------------------------~l~~---------------l 103 (229)
T 3e6j_A 99 ------------------------------------------------------------QLTV---------------L 103 (229)
T ss_dssp ------------------------------------------------------------CCCC---------------C
T ss_pred ------------------------------------------------------------cCCc---------------c
Confidence 3220 0
Q ss_pred HhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEE
Q 042509 733 ISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVK 801 (892)
Q Consensus 733 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~ 801 (892)
....+..+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+...++. +..+++|+.|+|.+|++.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 11223455667777777777776 777777788888888888776655544 777888888888887754
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=2.9e-11 Score=123.89 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=119.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
..++||+..++.+..++.... ..+++.|+|++|+||||||+.+++. ....+....+ .+ ... .....+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~-~~---~~~-~~~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT-PC---GVC-DNCREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS-CC---SCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC-CC---ccc-HHHHHHh
Confidence 369999999999999987543 2357899999999999999999873 2221110000 00 000 0001111
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHH-----hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-H
Q 042509 249 EGLEG-----ETSNLGSLQSYLLRIYEA-----IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-V 317 (892)
Q Consensus 249 ~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 317 (892)
..... ........+. ...+.+. ..+++.+||+||++.-+...+..+...+.....+..+|+||+... +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 0000001111 1112222 135689999999976555667777777766666788888887543 2
Q ss_pred Hh-hccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh
Q 042509 318 SR-MMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL 382 (892)
Q Consensus 318 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 382 (892)
.. .......+++.+++.++..+++.+.+....... -.+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 123346899999999999999998765332211 14557789999999999888776543
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=126.25 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=95.4
Q ss_pred cceEEcCCCCCCcccccccCCCCCCEEeccCcCCcccc-c-hhhhccccCCeecccccccccccc-cccCCcCCCcCCce
Q 042509 574 LRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRL-P-QEIGKLVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEF 650 (892)
Q Consensus 574 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p-~~i~~l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~ 650 (892)
-+.++++++.++.+|..+. ..+++|++++|. +..+ | ..+.++++|++|.+++|.+..++. .+.++++|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L- 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL- 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC-
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC-
Confidence 3577888888887777654 346788888777 4444 2 235667777777666665555543 2444444444444
Q ss_pred EeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccH
Q 042509 651 VVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQ 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 730 (892)
++|.+..
T Consensus 89 -----------------------------------------------------------s~N~l~~-------------- 95 (220)
T 2v70_A 89 -----------------------------------------------------------TSNRLEN-------------- 95 (220)
T ss_dssp -----------------------------------------------------------CSSCCCC--------------
T ss_pred -----------------------------------------------------------CCCccCc--------------
Confidence 4443321
Q ss_pred HHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 731 GAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 731 ~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
..+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+....|. +..+++|+.|+|++|++.+
T Consensus 96 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 96 -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred -cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 1122344566677777777777664466677777888888888777666454 7778888888888887664
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=5.3e-12 Score=126.51 Aligned_cols=131 Identities=23% Similarity=0.243 Sum_probs=107.0
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
+++++.|++++|.+..+|. .+..+++|++|+++++ +..+ |..|.++.+|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4688999999998888765 5778899999999886 5555 67788999999999999999988876 57889999999
Q ss_pred ccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCC
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
|++|......|..+..+++|++|++++|.+..+|.+ +..+++|++|++.+|.+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999884444567788899999998888888888765 7788889999888876643
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=6e-12 Score=126.09 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=41.7
Q ss_pred CCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEE
Q 042509 738 RPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKK 802 (892)
Q Consensus 738 ~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~ 802 (892)
..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+...++. +..+++|+.|+|++|++.+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 3445566666666666553455566667777777777766555554 6677778888887777654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.8e-12 Score=119.97 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=104.6
Q ss_pred cccceEEEEEeCCCC--CccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCc-ccccccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSV--AFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVE-LPETCCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~--~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 601 (892)
++++++|++++|.+. .+|..+..+++|++|+++++ +..+ ..++++++|++|++++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578999999999887 78888888999999999986 4455 678899999999999999987 787788899999999
Q ss_pred ccCcCCccccc--hhhhccccCCeecccccccccccc----cccCCcCCCcCCce
Q 042509 602 MEDCCNLKRLP--QEIGKLVNLRYLIYNDSYLHYLPR----GIERLTCLRTLSEF 650 (892)
Q Consensus 602 L~~~~~~~~lp--~~i~~l~~L~~L~~~~~~l~~lp~----~i~~L~~L~~L~l~ 650 (892)
+++|. ++.+| ..++.+++|++|.+++|.+..+|. .+..+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99998 66654 778999999999888888888876 57888999988864
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.2e-12 Score=142.25 Aligned_cols=172 Identities=22% Similarity=0.202 Sum_probs=103.4
Q ss_pred eEEEecCC-ccccChhhcCcCCcceEEcCCCCCCccccc-cc-CCCCCCEEeccCcCCccccc-hhhhccccCCeecccc
Q 042509 553 RSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPET-CC-ELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYLIYND 628 (892)
Q Consensus 553 r~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~~~~ 628 (892)
+++++.++ +..+|..+. ..+++|+|++|.|+.+|.. +. ++.+|++|+|++|. +..+| ..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 46666653 666776553 3578888888888877654 44 78888888888877 44444 5577888888887777
Q ss_pred ccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 629 SYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 629 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
|.+..+|.. +.++++|++|++++|.+.. +. ...+..+++|+.|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------------------~~--------------~~~~~~l~~L~~L 141 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVV----------------------VD--------------RNAFEDMAQLQKL 141 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCE----------------------EC--------------TTTTTTCTTCCEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccE----------------------EC--------------HHHhCCcccCCEE
Confidence 777776653 6677777777766554332 00 0234455667777
Q ss_pred EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCC-chhhhccC--CcEEEEeccC
Q 042509 708 ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFE-NWIVSLNK--LKKLFLINCY 776 (892)
Q Consensus 708 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p-~~~~~l~~--L~~L~L~~~~ 776 (892)
+|++|.+.... ......+..+++|+.|+|++|.+.. +| ..+..+++ |+.|+|.+|.
T Consensus 142 ~L~~N~l~~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 142 YLSQNQISRFP------------VELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCCSCC------------GGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCCcCCeeC------------HHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCC
Confidence 77777664200 0011111346667777777776666 44 33444544 3556666554
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=8.6e-12 Score=125.87 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=98.5
Q ss_pred cccceEEEEEeCCCCCc-cccccCCCcceEEEecCC-ccccChh-hcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAF-PVSIFKARKLRSLLIVGP-ICEIPKE-IENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~-p~~~~~~~~Lr~L~l~~~-~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
++++++|++++|.+..+ |..+..+++|++|+++++ +..+|.. +..+.+|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 57788888888887776 455677888888888875 5566543 57788888888888888877654 57788888888
Q ss_pred ccCcCCccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccC
Q 042509 602 MEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 602 L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 655 (892)
+++|. +..+|..+..+++|++|++++|.+..+|.. +..+++|+.|++.+|.+.
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88887 667888888888888887777778777754 677888888887777654
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=8.9e-12 Score=120.15 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=109.3
Q ss_pred ccccceEEEEEeCCCCCccccccCCC-cceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccc-cCCCCCCEEe
Q 042509 525 SMEKLRHFMLVLGKSVAFPVSIFKAR-KLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETC-CELFNLQTLE 601 (892)
Q Consensus 525 ~~~~lr~L~l~~~~~~~~p~~~~~~~-~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~ 601 (892)
.+.+++.|++++|.+..+|. +..+. +|++|+++++ +..+ ..++++++|++|++++|.|+.+|..+ ..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 37789999999999988864 55554 9999999986 5555 67899999999999999999988665 8999999999
Q ss_pred ccCcCCccccch--hhhccccCCeeccccccccccccc----ccCCcCCCcCCceEecc
Q 042509 602 MEDCCNLKRLPQ--EIGKLVNLRYLIYNDSYLHYLPRG----IERLTCLRTLSEFVVSR 654 (892)
Q Consensus 602 L~~~~~~~~lp~--~i~~l~~L~~L~~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~ 654 (892)
+++|. ++.+|. .+..+++|++|.+++|.+..+|.. +..+++|+.|++..|..
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99998 688887 789999999998888889888875 88999999999988764
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=123.87 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=93.4
Q ss_pred cccceEEEEEeCCCCCccc--cccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPV--SIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~--~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 600 (892)
...+++|++++|.+..++. .+..+++|++|+++++ +..++. .|+++.+|++|+|++|.++.+|.. +..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 4556778888887776632 3667788888888775 555544 577788888888888887766554 7778888888
Q ss_pred eccCcCCccccchhhhccccCCeecccccccccc-cccccCCcCCCcCCceEeccCC
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYL-PRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~ 656 (892)
+|++|......|..+..+++|++|++++|.+..+ |..+..+++|++|++.+|.+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888774444466777788888887777777766 5567777888888777776543
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=2.1e-11 Score=121.22 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=111.9
Q ss_pred cccceEEEEEeCCCCCcccc-ccCCCcceEEEecCC-ccccChh-hcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEe
Q 042509 526 MEKLRHFMLVLGKSVAFPVS-IFKARKLRSLLIVGP-ICEIPKE-IENFMYLRFLKLSKAEIVELPET-CCELFNLQTLE 601 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~-~~~~~~Lr~L~l~~~-~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 601 (892)
.+++++|++++|.+..++.. +..+++|++|+++++ +..+|.. +.++.+|++|+|++|.++.+|.. +.++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 67899999999999888765 678999999999986 6667654 68999999999999999988865 68999999999
Q ss_pred ccCcCCccccch-hhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCC
Q 042509 602 MEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 602 L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
+++|. +..+|. .+.++++|++|.+++|.+..+|.. +.++++|+.|++.+|....
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99998 556655 478999999998888889888876 7889999999999887653
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=3.1e-11 Score=118.04 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCcCC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDCCN 607 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 607 (892)
+.++++++.+.++|..+. ++|++|+++++ +..+|..+.++.+|++|+|++|.|+.++. .|.++++|++|+|++|..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 467788888888886654 68999999986 77889899999999999999999997764 589999999999999984
Q ss_pred ccccchhhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCC
Q 042509 608 LKRLPQEIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 608 ~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
....|..+.++++|++|.+++|.+..+|.+ +..+++|+.|++.+|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 444445789999999998889999998875 7889999999998887643
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=1.8e-11 Score=145.09 Aligned_cols=106 Identities=29% Similarity=0.394 Sum_probs=65.2
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
...++.|++++|.+..+|..++++++|++|+|++| +..+|..|+++.+|++|+|++|.|+.+|..+++|.+|++|+|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 45566666666666666655566666666666654 44566666666666666666666666666666666666666666
Q ss_pred cCCccccchhhhccccCCeecccccccc
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLH 632 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~ 632 (892)
|. ++.+|..|++|++|++|.+++|.+.
T Consensus 303 N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 303 NM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CC-CCccChhhhcCCCccEEeCCCCccC
Confidence 65 4566666666666666655555554
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=2.1e-10 Score=115.44 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=117.0
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc-cc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-FK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
..++|++..++.+.+++.... ...+.|+|++|+|||++|+.+++. .... +. ..+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH
Confidence 468999999999999997643 234899999999999999999873 3222 22 2334444433333222221
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhH-H-hhccCC
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETV-S-RMMEST 324 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~-~~~~~~ 324 (892)
+.. +..... ...+++.+||+||++......++.+...+.....+..+|+||+.... . ......
T Consensus 89 ~~~-~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKE-FARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHH-HHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHH-HhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111 110000 01257889999999765545556666666555567788888876431 1 112334
Q ss_pred ceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 325 NVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 325 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
..+++.+++.++..+++.+.+....... -.+..+.|++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4899999999999999988764322111 14556788999999998655443
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=3.4e-11 Score=117.77 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=102.0
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-ccccChh--hcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCc
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPKE--IENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDC 605 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 605 (892)
+.++++++.+.++|..+.. +|++|+++++ +..++.. ++++++|++|+|++|.|+.+ |..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888876654 8999999886 5666653 88999999999999999866 677999999999999999
Q ss_pred CCccccchhhhccccCCeecccccccccc-cccccCCcCCCcCCceEeccCC
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDSYLHYL-PRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~ 656 (892)
......|..+.++++|++|++++|.+..+ |..+..+++|++|++.+|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 84444455688999999998888888765 5668889999999998887654
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=1.1e-10 Score=126.62 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=87.5
Q ss_pred cccceEEEEEeCCCCCcccc-cc-CCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPVS-IF-KARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~-~~-~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 600 (892)
+..++.|++++|.+..++.. +. .+++|++|+++++ +..++ ..|.++++|++|+|++|.|+.+|. .+..+.+|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 45577777777777766544 33 6777777777765 45554 357777777777777777776654 46777777777
Q ss_pred eccCcCCccccchhhhccccCCeecccccccccccccc----cCCcCCCcCCceEeccC
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGI----ERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i----~~L~~L~~L~l~~~~~~ 655 (892)
+|++|......|..+.++++|++|.+++|.+..+|..+ .++++|+.|++.+|.+.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77777743334566777777777777777777777654 45777777777666544
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=9.1e-11 Score=109.55 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCcceEEEecCC-cc--ccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCee
Q 042509 548 KARKLRSLLIVGP-IC--EIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYL 624 (892)
Q Consensus 548 ~~~~Lr~L~l~~~-~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 624 (892)
..++|+.|+++++ +. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+.++++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3578999999986 54 6888889999999999999999988 778999999999999999544488888899999999
Q ss_pred ccccccccccc--ccccCCcCCCcCCceEeccCC
Q 042509 625 IYNDSYLHYLP--RGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 625 ~~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 656 (892)
.+++|.+..+| ..+..+++|++|++++|....
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 88889898875 779999999999998887653
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=7.3e-10 Score=105.74 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=98.9
Q ss_pred ccccccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccc-cChhhcCcCCcceEEcCCCCCCccc--ccccCCCCCC
Q 042509 523 STSMEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICE-IPKEIENFMYLRFLKLSKAEIVELP--ETCCELFNLQ 598 (892)
Q Consensus 523 ~~~~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~-lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~ 598 (892)
+..+++++.|++++|.+..+ ..+..+++|++|+++++ +.. +|..++++++|++|++++|.++.+| ..+..+++|+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 34578999999999999888 68899999999999986 555 7777888999999999999999887 7899999999
Q ss_pred EEeccCcCCccccch----hhhccccCCeeccccccccccccc
Q 042509 599 TLEMEDCCNLKRLPQ----EIGKLVNLRYLIYNDSYLHYLPRG 637 (892)
Q Consensus 599 ~L~L~~~~~~~~lp~----~i~~l~~L~~L~~~~~~l~~lp~~ 637 (892)
+|++++|. +..+|. .+..+++|++|++..|.+..+|..
T Consensus 124 ~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999998 667775 789999999998888888887754
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.4e-11 Score=121.42 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=56.8
Q ss_pred cccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhhhccccCCeecccccccccccccccCC
Q 042509 562 CEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPRGIERL 641 (892)
Q Consensus 562 ~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~~i~~L 641 (892)
..+|..++++++|++|++++|.++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++|.+..+| .+.++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 344556666666677777666666666 66666667777776665 5566666666666666666666666555 45566
Q ss_pred cCCCcCCceEecc
Q 042509 642 TCLRTLSEFVVSR 654 (892)
Q Consensus 642 ~~L~~L~l~~~~~ 654 (892)
++|++|++.+|.+
T Consensus 115 ~~L~~L~l~~N~i 127 (198)
T 1ds9_A 115 VNLRVLYMSNNKI 127 (198)
T ss_dssp HHSSEEEESEEEC
T ss_pred CCCCEEECCCCcC
Confidence 6666666655543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=7.1e-10 Score=106.85 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=102.1
Q ss_pred ceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCc
Q 042509 529 LRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDC 605 (892)
Q Consensus 529 lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 605 (892)
.+.+++.++.+..+|..+. ++|++|+++++ +..+|. .++++.+|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567788888888885543 68999999985 566665 468899999999999999988765 689999999999999
Q ss_pred CCccccch-hhhccccCCeeccccccccccccc-ccCCcCCCcCCceEeccCC
Q 042509 606 CNLKRLPQ-EIGKLVNLRYLIYNDSYLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 606 ~~~~~lp~-~i~~l~~L~~L~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
. ++.+|. .+.++++|++|++++|.+..+|.. +.++++|++|++.+|....
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8 556654 468999999998888899988877 4789999999998887654
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=1.8e-09 Score=115.41 Aligned_cols=185 Identities=12% Similarity=0.153 Sum_probs=116.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
.+++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++. ... .+. ..+++..+....... .++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~ 91 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRN 91 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHT
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHH
Confidence 469999999999999987543 223899999999999999999883 321 121 234444333222211 122
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-HH-hhccC
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-VS-RMMES 323 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~ 323 (892)
+++.+.... ..+ .+++.++|+||++.-....++.+...+.....++.+|+||+... +. .....
T Consensus 92 ~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222111000 001 35688999999976555556667766665556778888886542 11 12233
Q ss_pred CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHH-HHHHhh
Q 042509 324 TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLA-AKTIGS 380 (892)
Q Consensus 324 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla-i~~~~~ 380 (892)
...+++.+++.++..+++...+....... -.+..+.|++.++|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45899999999999999988764222111 145567899999999954 444433
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=5.7e-10 Score=119.46 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=48.5
Q ss_pred ccCCcEEEEeccCCCCcCCC-CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccc-eeecccccccccccc
Q 042509 764 LNKLKKLFLINCYNCEIMPP-LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLK-HLKFMKLSEWEEWDF 841 (892)
Q Consensus 764 l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~-~L~l~~l~~l~~~~~ 841 (892)
+++|+.|+|.+|.....++. +..+++|+.|+|.+| ++.++...|. .+++|+ .+.+.+ +++.+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~-----------~~~~L~~~l~l~~--~l~~I~- 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS-----------NCGRLAGTLELPA--SVTAIE- 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----------TCTTCCEEEEECT--TCCEEC-
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh-----------CChhccEEEEEcc--cceEEc-
Confidence 55666666665544444333 556666666666555 5555543321 233444 444433 222222
Q ss_pred ccccCcccccCcCCccceeeecccccCcCCCc-CCCCCcceE
Q 042509 842 GITRSGKEEITIMPQLNSLEIILCAKLKSLPN-QLLQRTKLN 882 (892)
Q Consensus 842 ~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~-~l~~l~~L~ 882 (892)
...+..+++|+.|++.++ +++.++. .+..+++|+
T Consensus 290 ------~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 290 ------FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSK 324 (329)
T ss_dssp ------TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCC
T ss_pred ------hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchh
Confidence 233445666666666555 5555554 333455555
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=1.3e-09 Score=116.57 Aligned_cols=267 Identities=15% Similarity=0.090 Sum_probs=142.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++ .... ..+++..+......++...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~~~l- 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLAAIL- 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHHHHH-
Confidence 4699999999998887753210 011235688999999999999999987 3322 23345443332222222111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC------------------CCcEEEE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ------------------CGSKILV 310 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~------------------~gs~iiv 310 (892)
...+ .+..+|++||+..........+...+.... +...+|.
T Consensus 85 --------------------~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 85 --------------------ANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------------TTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------------HHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1101 245588888886543333333433332210 2345666
Q ss_pred EcCchh-HHhh-ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhhccC--
Q 042509 311 TTRKET-VSRM-MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLLCFK-- 385 (892)
Q Consensus 311 Ttr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~-- 385 (892)
||.... +... ... ...+.+.+++.++..+++.+.+....... -.+..+.|++.++|.|..+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 2111 122 24789999999999999988764332211 24567789999999998777665443211
Q ss_pred ------CCHHHHHHhhhhccccccccccchhhHHHhhhcCChHhHHHHHhhhc-CCCCC----------cccchHHHH--
Q 042509 386 ------RTEEEWQSILDSELWKVEEFENDLFGPLLMSFNDLPSRIKRCFTFCA-VFPKD----------WDIKKDELI-- 446 (892)
Q Consensus 386 ------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li-- 446 (892)
-+.+....+... +...+..++...+..+.... .|..+ ..+++..+-
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 123333333322 11122334433333333221 12111 113333332
Q ss_pred --HHHHHcCCccCCC-CchHHHHHHHHHH-HHHhccCccc
Q 042509 447 --KLWMAQGYITPKE-NKEMEIIGDEYFD-YLATRSFFQD 482 (892)
Q Consensus 447 --~~w~a~g~i~~~~-~~~~e~~~~~~~~-~L~~~~ll~~ 482 (892)
++-+..|+|.... +....+.|..||+ ++.+|+|+|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2345678886443 4557788899997 8999999885
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=2.3e-10 Score=122.56 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=73.3
Q ss_pred CCCCCeEEEeeecCCCCCCc-hhhhccCCcEEEEeccCCCCcCCC-CCCCCCCC-eEEEcceEEEEeCCcccCCCCCCCC
Q 042509 740 PPNLESLEIWEYKGKAVFEN-WIVSLNKLKKLFLINCYNCEIMPP-LGKLPFLE-SLKIRNMNVKKVGDEFLGIKSNHSS 816 (892)
Q Consensus 740 ~~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~-~L~L~~~~l~~~~~~~~~~~~n~~~ 816 (892)
+++|+.|+|.+|.++. +|. .|..+++|+.|+|.+| .....+. +..+++|+ .|.+.+ .++.++...|.
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~------- 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM------- 294 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT-------
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh-------
Confidence 6899999999998888 655 4678999999999987 4444443 89999999 999988 78888765442
Q ss_pred CCCCCCCccceeeccccccccccccccccCcccccCcCCccceeee
Q 042509 817 GPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEI 862 (892)
Q Consensus 817 ~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i 862 (892)
.+++|+.|.+.+ .++..+. ...+..+++|+.|+.
T Consensus 295 ----~c~~L~~l~l~~-n~i~~I~-------~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 ----GCDNLRYVLATG-DKITTLG-------DELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TCTTEEEEEECS-SCCCEEC-------TTTTCTTCCCCEEEC
T ss_pred ----CCccCCEEEeCC-CccCccc-------hhhhcCCcchhhhcc
Confidence 456777776543 2333333 334556788887763
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=6.8e-10 Score=106.81 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=91.6
Q ss_pred cccCCCcceEEEecCC-ccccChhhcCcC-CcceEEcCCCCCCcccccccCCCCCCEEeccCcCCccccchhh-hccccC
Q 042509 545 SIFKARKLRSLLIVGP-ICEIPKEIENFM-YLRFLKLSKAEIVELPETCCELFNLQTLEMEDCCNLKRLPQEI-GKLVNL 621 (892)
Q Consensus 545 ~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~l~~L 621 (892)
.+.++.+|++|+++++ +..+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 5677899999999986 566654 55555 999999999999988 678999999999999998 66777555 899999
Q ss_pred Ceecccccccccccc--cccCCcCCCcCCceEeccC
Q 042509 622 RYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 622 ~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~ 655 (892)
++|++++|.+..+|. .+..+++|+.|++.+|...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 999999999998887 7889999999998877654
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.1e-09 Score=104.76 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCC 606 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 606 (892)
+.++++++.+..+|..+. ++|++|+++++ +..+ |..|+++++|++|+|++|.|+.+|.. +.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666677776765543 56666666664 4444 44566666666666666666666654 4566666666666665
Q ss_pred Cccccchh-hhccccCCeeccccccccccccc
Q 042509 607 NLKRLPQE-IGKLVNLRYLIYNDSYLHYLPRG 637 (892)
Q Consensus 607 ~~~~lp~~-i~~l~~L~~L~~~~~~l~~lp~~ 637 (892)
+..+|.. +..+++|++|.+++|.+...|..
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred -cceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 4455543 66666666666666655555443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=4e-11 Score=118.02 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=105.3
Q ss_pred cceEEEEEeC--CCCCccccccCCCcceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcccccccCCCCCCEEeccC
Q 042509 528 KLRHFMLVLG--KSVAFPVSIFKARKLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEMED 604 (892)
Q Consensus 528 ~lr~L~l~~~--~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 604 (892)
.++...+... .+..+|..+..+++|++|+++++ +..+| .++++++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 4455555544 56677778999999999999986 66777 89999999999999999999998888889999999999
Q ss_pred cCCccccchhhhccccCCeecccccccccccc--cccCCcCCCcCCceEeccC
Q 042509 605 CCNLKRLPQEIGKLVNLRYLIYNDSYLHYLPR--GIERLTCLRTLSEFVVSRS 655 (892)
Q Consensus 605 ~~~~~~lp~~i~~l~~L~~L~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~ 655 (892)
|. +..+| .+.++++|++|.+++|.+..+|. .+.++++|++|++.+|...
T Consensus 103 N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 103 NQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred Cc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 98 67777 69999999999888888887765 6889999999998877654
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=2.3e-09 Score=104.63 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=93.8
Q ss_pred cccceEEEEEeCCCCCcccc--ccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEE
Q 042509 526 MEKLRHFMLVLGKSVAFPVS--IFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTL 600 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~--~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 600 (892)
..+++.|.+++|.+..++.. +..+++|++|+++++ +..+ |..|+++.+|++|+|++|.|+.+|.. +..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 45899999999999988764 889999999999986 5555 77899999999999999999977654 8899999999
Q ss_pred eccCcCCccccchhhhccccCCeecccccccc
Q 042509 601 EMEDCCNLKRLPQEIGKLVNLRYLIYNDSYLH 632 (892)
Q Consensus 601 ~L~~~~~~~~lp~~i~~l~~L~~L~~~~~~l~ 632 (892)
+|++|...+..|..+..+++|++|.+++|.+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999965666888999999999988888765
No 152
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=5.3e-09 Score=102.01 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred cccceEEEEEeCCCCCccccccCCCcceEEEecCC-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEec
Q 042509 526 MEKLRHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEM 602 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L 602 (892)
+.+++.|++++|.+..+|..+..+++|++|+++++ +..++ ..|.++.+|++|+|++|.|+.+|. .+..+++|++|+|
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57899999999999999989999999999999986 66665 568999999999999999998775 6999999999999
Q ss_pred cCcCCccccch-hhhccccCCeecccccccc
Q 042509 603 EDCCNLKRLPQ-EIGKLVNLRYLIYNDSYLH 632 (892)
Q Consensus 603 ~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l~ 632 (892)
++|. +..+|. .+..+++|++|.+++|.+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 9998 667765 5889999999988877665
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=4.1e-09 Score=100.84 Aligned_cols=101 Identities=26% Similarity=0.328 Sum_probs=88.2
Q ss_pred eEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcCCccccchh-hhccccCCeeccccc
Q 042509 553 RSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCCNLKRLPQE-IGKLVNLRYLIYNDS 629 (892)
Q Consensus 553 r~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~~~~~ 629 (892)
++++++++ +..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 67888875 778888775 8999999999999987 5679999999999999998 7777765 589999999999999
Q ss_pred cccccccc-ccCCcCCCcCCceEeccCC
Q 042509 630 YLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 630 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
.+..+|.+ +.++++|++|++.+|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999887 8899999999999987754
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1e-08 Score=109.63 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=115.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc-cc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-FK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
.+++|++..++.+..++.... ...+.++|++|+||||+|+.+++. .... +. ..+.+..+...... ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH
Confidence 469999999999999887543 234899999999999999999883 3221 11 23333332211100 0011
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHH--h-cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhH-H-hhc
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEA--I-AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETV-S-RMM 321 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~-~~~ 321 (892)
. ....... + .+++.++|+||++.-....+..+...+.....++++|+||....- . ...
T Consensus 96 ~-----------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 K-----------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp H-----------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred H-----------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 1 1111110 1 267889999999765555666677776665667888888865431 1 111
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSL 381 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 381 (892)
.....+.+.+++.++..+++...+...... --.+..+.|++.++|.|..+..+...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 233478999999999999998876433221 12456778999999999866554443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=6.3e-09 Score=99.18 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=46.8
Q ss_pred eEEEEEeCCCCCccccccCCCcceEEEecCC-cccc-ChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcC
Q 042509 530 RHFMLVLGKSVAFPVSIFKARKLRSLLIVGP-ICEI-PKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCC 606 (892)
Q Consensus 530 r~L~l~~~~~~~~p~~~~~~~~Lr~L~l~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 606 (892)
+.++++++.+..+|..+. ++|++|+++++ +..+ |..|+++.+|++|+|++|.|+.+|.. +.++++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345555555555554332 44555555543 3333 33344555555555555555544443 3445555555555544
Q ss_pred Cccccch-hhhccccCCeeccccccc
Q 042509 607 NLKRLPQ-EIGKLVNLRYLIYNDSYL 631 (892)
Q Consensus 607 ~~~~lp~-~i~~l~~L~~L~~~~~~l 631 (892)
+..+|. .+.++++|++|.+++|.+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 333332 244455555554444433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=5.9e-09 Score=99.38 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=88.5
Q ss_pred cceEEEecCC-ccccChhhcCcCCcceEEcCCCCCCcc-cccccCCCCCCEEeccCcCCccccchh-hhccccCCeeccc
Q 042509 551 KLRSLLIVGP-ICEIPKEIENFMYLRFLKLSKAEIVEL-PETCCELFNLQTLEMEDCCNLKRLPQE-IGKLVNLRYLIYN 627 (892)
Q Consensus 551 ~Lr~L~l~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~~~ 627 (892)
..++++++++ +..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 3578888875 778888764 8999999999999987 5669999999999999998 6666654 6899999999999
Q ss_pred cccccccccc-ccCCcCCCcCCceEeccCC
Q 042509 628 DSYLHYLPRG-IERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 628 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 656 (892)
+|.+..+|.+ +.++++|++|++.+|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999999876 8899999999999997754
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=6.3e-08 Score=100.59 Aligned_cols=171 Identities=8% Similarity=-0.019 Sum_probs=106.6
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc------ccceeEEEEeCCCCCHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN------HFKIRMWVCVSDPFDEFSV 243 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv~~s~~~~~~~~ 243 (892)
.+.||++++++|...|...-. ......+.|+|++|.|||++|+.|++.-.... .| ..+++++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 488999999999988865321 23467889999999999999999998422111 12 3567777778888999
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh---cCCeEEEEEecCCCCCcCChhhhhhhcCC-CCCCc--EEEEEcCchh-
Q 042509 244 AKSIIEGLEGETSNLGSLQSYLLRIYEAI---AKKKFLLVLDDVWNDDRTKWEPLNHCLMN-GQCGS--KILVTTRKET- 316 (892)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDd~w~~~~~~~~~l~~~l~~-~~~gs--~iivTtr~~~- 316 (892)
+..|++++.+..............+.+.+ .++++++|||+++.-. .-+.+...+.. ....+ .||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999999664322222222333333333 4678999999996432 22334333321 01122 3344443321
Q ss_pred ----HH----hhccCCceEeCCCCCHHHHHHHHHHHhh
Q 042509 317 ----VS----RMMESTNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 317 ----v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
+. ..++ ...+.+.+++.+|-.+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 24789999999999999988763
No 158
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=2.2e-08 Score=96.25 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCC
Q 042509 704 LFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPP 783 (892)
Q Consensus 704 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~ 783 (892)
.+.++++.+++. .++..+ +++|+.|++++|.+.+..+..+..+++|+.|+|++|.+...++.
T Consensus 9 ~~~l~~~~~~l~----------------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLT----------------SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp TTEEECCSSCCS----------------SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CCEEEecCCCCc----------------cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence 567777776663 233322 46899999999998873344567889999999999987766655
Q ss_pred -CCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeee
Q 042509 784 -LGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEI 862 (892)
Q Consensus 784 -l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i 862 (892)
++.+++|++|++++|.++.++...+ ..+++|+.|.+.+. .+..++ ...+..+++|+.|++
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~-----------~~l~~L~~L~l~~N-~l~~~~-------~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVF-----------DKLTQLKELALDTN-QLKSVP-------DGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSS-CCSCCC-------TTTTTTCTTCCEEEC
T ss_pred HccCCCccCEEECCCCCccccCHHHh-----------hCCcccCEEECcCC-cceEeC-------HHHhcCCcccCEEEe
Confidence 6889999999999998876654433 25677888877763 333332 333456888999999
Q ss_pred cccc
Q 042509 863 ILCA 866 (892)
Q Consensus 863 ~~c~ 866 (892)
++|+
T Consensus 132 ~~N~ 135 (177)
T 2o6r_A 132 HTNP 135 (177)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8884
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.73 E-value=6e-08 Score=105.78 Aligned_cols=195 Identities=13% Similarity=0.164 Sum_probs=115.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|++..++.+...+.... ..+.+.|+|++|+||||+|+.+.+.......+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999986543 234788999999999999999987321111100 00001111111111
Q ss_pred Hhc-------cCCC-CCCCCHHHHHHHHHHH-hcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-H-
Q 042509 249 EGL-------EGET-SNLGSLQSYLLRIYEA-IAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-V- 317 (892)
Q Consensus 249 ~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v- 317 (892)
... .... ....+...+...+... ..+++.++|+||++.-+...+..+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 0000 1112222222221111 135678999999966555566667777766555677777775432 2
Q ss_pred HhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 318 SRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
.........+++.+++.++..+++.+.+....... -.+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 12223356899999999999999987653222111 14556789999999999776554
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=1.2e-07 Score=103.58 Aligned_cols=222 Identities=11% Similarity=0.102 Sum_probs=109.2
Q ss_pred cceEEEecCCccccChh-hcCcCCcceEEcCCCCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeecccc
Q 042509 551 KLRSLLIVGPICEIPKE-IENFMYLRFLKLSKAEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYND 628 (892)
Q Consensus 551 ~Lr~L~l~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~ 628 (892)
+|+.+.+..++..++.. |.+ .+|+.+.+.. .++.++ ..|.++.+|+.++++.|. +..+|...-.+.+|+.+.+..
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC
Confidence 67777777666666543 444 3577777765 455554 346677777777777665 556655443456777774443
Q ss_pred ccccccccc-ccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeE
Q 042509 629 SYLHYLPRG-IERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRL 707 (892)
Q Consensus 629 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 707 (892)
+ +..++.. +.++++|+.+.+..+- .. .....+.. ..|+.+ .+. .++.. .....+.++++|+.+
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~l-~~-I~~~aF~~-~~L~~i-------~lp--~~i~~---I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPENV-ST-IGQEAFRE-SGITTV-------KLP--NGVTN---IASRAFYYCPELAEV 276 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTTC-CE-ECTTTTTT-CCCSEE-------EEE--TTCCE---ECTTTTTTCTTCCEE
T ss_pred c-hheehhhHhhCCCCCCEEecCCCc-cC-cccccccc-CCccEE-------EeC--CCccE---EChhHhhCCCCCCEE
Confidence 2 5555443 5666677766654321 10 00011111 122211 111 01110 111345666667777
Q ss_pred EEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC-CCCC
Q 042509 708 ELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP-PLGK 786 (892)
Q Consensus 708 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~ 786 (892)
.+..+..... .....-...+..+++|+.+.|.. .+...-...|..+++|+.+.|.++ .....+ .+..
T Consensus 277 ~l~~~~~~~~----------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 277 TTYGSTFNDD----------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp EEESSCCCCC----------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred EeCCccccCC----------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 6665543200 00000123445566666666653 333312334445666666666544 222222 2555
Q ss_pred CCCCCeEEEcceEEEEeC
Q 042509 787 LPFLESLKIRNMNVKKVG 804 (892)
Q Consensus 787 l~~L~~L~L~~~~l~~~~ 804 (892)
+ +|+.|.+.+|.+..++
T Consensus 345 ~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp S-CCCEEEECCSSCCBCC
T ss_pred C-CCCEEEEcCCCCcccc
Confidence 6 6666666666544443
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.67 E-value=1.8e-07 Score=99.50 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhh-hcccc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDV-RNHFK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
.+++|++..++.+.+++.... ...+.++|++|+|||++|+.+++. . ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERG------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTC-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccC-------
Confidence 358999999999988886532 233899999999999999999873 2 11111 123344332111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHH--h-cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-HH-hhc
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEA--I-AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-VS-RMM 321 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~ 321 (892)
.............. + .+++.++|+|+++.-.......+...+.....+..+|+||.... +. ...
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 11111111111111 1 25688999999965544455667776766566778888776543 11 112
Q ss_pred cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 322 ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 322 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
.....+++.+++.++..+++...+......- -.+..+.|++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345899999999999999988764332211 24556788999999998655443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=9.1e-07 Score=96.61 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=73.1
Q ss_pred CCCcceEEEecCCccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcCCccccc-hhhhccccCCee
Q 042509 548 KARKLRSLLIVGPICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCCNLKRLP-QEIGKLVNLRYL 624 (892)
Q Consensus 548 ~~~~Lr~L~l~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L 624 (892)
.+..+.++.+..++..++. .|.++ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. . +..++ ..+.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCee
Confidence 3577888888888887765 46664 7999999876 7766654 555 4799999986 3 55554 678899999999
Q ss_pred cccccccccccccccCCcCCCcCCce
Q 042509 625 IYNDSYLHYLPRGIERLTCLRTLSEF 650 (892)
Q Consensus 625 ~~~~~~l~~lp~~i~~L~~L~~L~l~ 650 (892)
.+..|.+..+|.+.....+|+.+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred ecCCCcceEechhhEeecccCEEEeC
Confidence 88878888888775556777777653
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=2.2e-07 Score=90.57 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=83.7
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-------ccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-------HFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~s~~~~~~ 241 (892)
..++||+++++++.+.+.... .+.+.|+|++|+|||++|+.+++. ... .....+++.++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 88 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 88 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEEECHHH-----
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEEeeHHH-----
Confidence 468999999999999987632 345789999999999999999883 221 112334443211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh--cCCeEEEEEecCCCCC--------cCChhhhhhhcCCCCCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI--AKKKFLLVLDDVWNDD--------RTKWEPLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd~w~~~--------~~~~~~l~~~l~~~~~gs~iivT 311 (892)
+ .. . .............+.+.+ .+++.+|||||++... ......+...+.. .+..+|.|
T Consensus 89 -~----~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 -L----VA---G-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp -H----HT---T-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred -H----hc---c-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 1 10 0 000001111122222222 4668899999995431 1122333333322 24456777
Q ss_pred cCchhHHh-------hccCCceEeCCCCCHHHHHHHH
Q 042509 312 TRKETVSR-------MMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 312 tr~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 341 (892)
|....... .......+.+.+++.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 66544221 1222336889999988877654
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=9.5e-08 Score=103.04 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=61.4
Q ss_pred EEEEEeC-CCCCccccccCCCcceEEEecC-C-ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEEeccCc
Q 042509 531 HFMLVLG-KSVAFPVSIFKARKLRSLLIVG-P-ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTLEMEDC 605 (892)
Q Consensus 531 ~L~l~~~-~~~~~p~~~~~~~~Lr~L~l~~-~-~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 605 (892)
.++.+++ .+..+|. +..+.+|++|+|++ | +..+| ..|+++.+|++|+|++|.|+.+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5666776 66666777777753 3 55555 446667777777777777665543 4666777777777776
Q ss_pred CCccccchhhhccccCCeeccccccccc
Q 042509 606 CNLKRLPQEIGKLVNLRYLIYNDSYLHY 633 (892)
Q Consensus 606 ~~~~~lp~~i~~l~~L~~L~~~~~~l~~ 633 (892)
. +..+|..+....+|++|.+.+|.+..
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred c-cceeCHHHcccCCceEEEeeCCCccC
Confidence 6 45555443333336666666655543
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=2.1e-07 Score=94.40 Aligned_cols=174 Identities=14% Similarity=0.062 Sum_probs=100.2
Q ss_pred Cceecch---hhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRD---DEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
+.|+|++ ..++.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3567633 4455555555432 2457899999999999999999883 3333345667766431110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCC--hhhhhhhcCCC-CCC-cEEEEEcCchh-----
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTK--WEPLNHCLMNG-QCG-SKILVTTRKET----- 316 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~----- 316 (892)
+.+.+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -~~~~~------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STALL------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGGGG------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHHHH------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00000 011 345689999996543322 23343333211 112 24777776321
Q ss_pred ----HHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 317 ----VSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 317 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
+...+.....+++.+++.++..+++.+.+...... --.+..+.|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11112222689999999999999998876422211 124566788999999887665443
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=5.5e-06 Score=90.74 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=64.2
Q ss_pred CCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCC-CCCCCCCCCeEEEcceEEEEeCCcccCCCCCCC
Q 042509 737 LRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMP-PLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHS 815 (892)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~ 815 (892)
+..+..++.+......+. ...+..+.+|+.+.+.++ ...... .+..+++|+.+.|.++ ++.++...|.
T Consensus 272 F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~------ 340 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR------ 340 (394)
T ss_dssp TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT------
T ss_pred cccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc------
Confidence 344556666655443221 123446677777777654 222222 2667778888877543 6666643332
Q ss_pred CCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCcCCCCCcceE
Q 042509 816 SGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPNQLLQRTKLN 882 (892)
Q Consensus 816 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~l~~l~~L~ 882 (892)
.+.+|+.+.+-. +++.+. ...+..+++|+++++..+ ++.+...+..+++|+
T Consensus 341 -----~c~~L~~i~lp~--~l~~I~-------~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 341 -----GCTSLSNINFPL--SLRKIG-------ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFK 391 (394)
T ss_dssp -----TCTTCCEECCCT--TCCEEC-------TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEE
T ss_pred -----CCCCCCEEEECc--cccEeh-------HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCc
Confidence 334555555532 233322 334556788888888644 444444555666666
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.2e-06 Score=94.62 Aligned_cols=194 Identities=13% Similarity=0.071 Sum_probs=113.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccc-eeEEEEeCCCCCHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFK-IRMWVCVSDPFDEFSVAKSI 247 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i 247 (892)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ..+.+..+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999987543 22389999999999999999988421111121 2333443332222222 222
Q ss_pred HHhccCC-CCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-HHh-hccCC
Q 042509 248 IEGLEGE-TSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-VSR-MMEST 324 (892)
Q Consensus 248 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~ 324 (892)
+...... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +.. .....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2211110 0000000 00011124567999999965444445556666655555667777765432 211 11223
Q ss_pred ceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 325 NVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 325 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
..+.+.+++.++....+.+.+......- -.+..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 4789999999999999988764322211 1456788999999999865544
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=4.5e-07 Score=97.65 Aligned_cols=102 Identities=14% Similarity=-0.018 Sum_probs=80.9
Q ss_pred EEEecCC--ccccChhhcCcCCcceEEcCC-CCCCccc-ccccCCCCCCEEeccCcCCccccchhhhccccCCeeccccc
Q 042509 554 SLLIVGP--ICEIPKEIENFMYLRFLKLSK-AEIVELP-ETCCELFNLQTLEMEDCCNLKRLPQEIGKLVNLRYLIYNDS 629 (892)
Q Consensus 554 ~L~l~~~--~~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~~~~~ 629 (892)
.++++++ +..+|. |..+.+|++|+|++ |.|+.+| ..|.+|.+|++|+|++|...+..|..|.+|++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466654 778888 99999999999996 8899877 46889999999999999844444567889999999988889
Q ss_pred ccccccccccCCcCCCcCCceEeccCC
Q 042509 630 YLHYLPRGIERLTCLRTLSEFVVSRSG 656 (892)
Q Consensus 630 ~l~~lp~~i~~L~~L~~L~l~~~~~~~ 656 (892)
.+..+|..+.....|+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 999888775544448999888887654
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2.7e-08 Score=107.69 Aligned_cols=165 Identities=12% Similarity=0.022 Sum_probs=87.4
Q ss_pred cCCcceEEcCCCCCCc-----cccccc-CCCCCCEEeccCcCCccccchhh-hccccCCeeccccccccccc-----ccc
Q 042509 571 FMYLRFLKLSKAEIVE-----LPETCC-ELFNLQTLEMEDCCNLKRLPQEI-GKLVNLRYLIYNDSYLHYLP-----RGI 638 (892)
Q Consensus 571 l~~L~~L~L~~~~i~~-----lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~~~~~~l~~lp-----~~i 638 (892)
+.+|++|+|++|.++. +...+. ...+|++|+|++|.....-...+ ..+++|++|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777663 222222 22577777777776322212222 34556677766666554221 111
Q ss_pred -cCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCCceEEeccCCCCChhhhhhhcccCCCCCCeEEEEeeCCCch
Q 042509 639 -ERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRGFLAIVGLGNVKDVDEAKNAELEKKKNLFRLELWFNNKEEE 717 (892)
Q Consensus 639 -~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 717 (892)
...++|++|+++.|.+... ........+...++|++|+|++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~--------------------------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~- 197 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAA--------------------------------GVAVLMEGLAGNTSVTHLSLLHTGLGD- 197 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHH--------------------------------HHHHHHHHHHTCSSCCEEECTTSSCHH-
T ss_pred HhcCCccceeeCCCCCCChH--------------------------------HHHHHHHHHhcCCCcCEEeCCCCCCCc-
Confidence 2345666666655543210 001112334456677778887777642
Q ss_pred hhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCC----CCchhhhccCCcEEEEeccCCC
Q 042509 718 EEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAV----FENWIVSLNKLKKLFLINCYNC 778 (892)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~ 778 (892)
.....+...+..+++|++|+|++|.++.. ++..+...++|+.|+|++|.+.
T Consensus 198 ----------~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 198 ----------EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ----------HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ----------HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11123455566666788888887776531 2222334567777777777644
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=6.1e-06 Score=90.88 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=104.4
Q ss_pred CceecchhhH---HHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEK---NKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
.+++|.+..+ ..+...+.... ...+.|+|++|+||||||+.+.+ .....| +.++.......-.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHHHH
Confidence 4689998887 66777776532 46789999999999999999988 333222 22222111111111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHH-HHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEE-EcCchh--H-Hhh
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIY-EAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILV-TTRKET--V-SRM 320 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v-~~~ 320 (892)
.++. ... ....+++.+|++|+++.-.....+.+...+..+ ...+|. ||.+.. + ...
T Consensus 93 ~~~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1111 111 112467889999999766555666676666552 233443 554432 1 122
Q ss_pred ccCCceEeCCCCCHHHHHHHHHHHhhCCCCC---CCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 321 MESTNVMFIEELSESECWRLFQQLAFFGRSP---SECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 321 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
.....++.+.+++.++...++.+.+...... ....--.+..+.|++.++|.+..+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 3445688999999999999998876431110 111123456678888899988755433
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.36 E-value=5.1e-06 Score=88.93 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=104.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|++..++.+..++..... .......|.|+|++|+|||++|+.+.+ +.... .+.+..+....... +..++
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~~~-~~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKSGD-LAAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSHHH-HHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccchhH-HHHHH
Confidence 4699999999999888864311 012345689999999999999999977 33322 23333322211111 11111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC------------------CCcEEEE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ------------------CGSKILV 310 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~------------------~gs~iiv 310 (892)
.. ..+.-+|+||++..........+...+.... ++..+|.
T Consensus 102 ~~----------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 102 TN----------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp HT----------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred Hh----------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11 2345688889886544333444444443221 1245666
Q ss_pred EcCchh-HHhh-ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 311 TTRKET-VSRM-MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 311 Ttr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
||.... +... ... ...+.+.+++.++..+++.+.+..... .--.+..+.|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 665432 1111 122 257999999999999999887643221 112456778888999999655444
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=6.7e-06 Score=89.22 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=107.7
Q ss_pred CceecchhhHHH---HHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe----CCCCCHH
Q 042509 169 DRVCGRDDEKNK---LIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV----SDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----s~~~~~~ 241 (892)
+.++|++..++. +.+.+..... ..+.+.|+|++|+|||++|+.+.+. ...... .+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 469999988776 4444444321 2357899999999999999999983 332111 122221 1223344
Q ss_pred HHHHHHHHhccCC---------------------C--------C-CCCCHHHHHHHHHHHh-----cCC----eEEEEEe
Q 042509 242 SVAKSIIEGLEGE---------------------T--------S-NLGSLQSYLLRIYEAI-----AKK----KFLLVLD 282 (892)
Q Consensus 242 ~~~~~i~~~l~~~---------------------~--------~-~~~~~~~~~~~l~~~l-----~~k----r~LlVlD 282 (892)
+.+...+....+. . . ...........+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 4444443331110 0 0 0000122222222211 244 3499999
Q ss_pred cCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc-------------hhH-HhhccCCceEeCCCCCHHHHHHHHHHHhhCC
Q 042509 283 DVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK-------------ETV-SRMMESTNVMFIEELSESECWRLFQQLAFFG 348 (892)
Q Consensus 283 d~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 348 (892)
++..-+......+...+...... .++++|.. ..+ .........+.+.+++.++..+++.+.+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99655555555566656544333 34444431 111 1112233468999999999999999876432
Q ss_pred CCCCCCchHHHHHHHHHHhcC-CchHHHHHH
Q 042509 349 RSPSECENLEEIGRKIVHKCK-GLPLAAKTI 378 (892)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~c~-G~Plai~~~ 378 (892)
... --.+..+.|++.+. |.|..+..+
T Consensus 276 ~~~----~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVE----MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCC----BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 221 12456677888887 877655443
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.29 E-value=7.3e-06 Score=87.22 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh--------------------cccceeEEEEe
Q 042509 175 DDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR--------------------NHFKIRMWVCV 234 (892)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~ 234 (892)
++..+.+...+.... -.+.+.++|+.|+|||++|+.+.+.-.-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445566666665433 24578999999999999999887631100 1122 222221
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEE
Q 042509 235 SDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-----AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKIL 309 (892)
Q Consensus 235 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~ii 309 (892)
.. .......++... +.+.+ .+++-++|+|+++.-+....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 3567899999997655555666777777666677777
Q ss_pred EEcCchh-HH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 310 VTTRKET-VS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 310 vTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
++|.... +. ...+....+++.++++++..+++.+.. . .+ .+....+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7766542 22 223445689999999999999998764 1 11 3445779999999998766544
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=3.6e-06 Score=92.91 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=105.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccc--eeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFK--IRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
...+.|+|++|+||||||+.+++ .....+. .+++++.. .+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 45789999999999999999998 4444432 34555433 3344444444321 11 22334444
Q ss_pred CCeEEEEEecCCCCCc--CChhhhhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHH
Q 042509 274 KKKFLLVLDDVWNDDR--TKWEPLNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLF 341 (892)
Q Consensus 274 ~kr~LlVlDd~w~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 341 (892)
.+.-+|++||++.-.. ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999964322 122234333321 23466788888752 22333333457899999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhh------cc-CCCHHHHHHhhhh
Q 042509 342 QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGSLL------CF-KRTEEEWQSILDS 397 (892)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l------~~-~~~~~~w~~~~~~ 397 (892)
.+.+......- . .++...|++.+.|.+-.+.-+...+ .. .-+.+.+..++..
T Consensus 273 ~~~~~~~~~~i-~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGEL-P---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCCC-C---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCCC-C---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 88764221111 1 2345678889999886544322211 11 1356666666654
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=6e-08 Score=104.93 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred cccceEEEEEeCCCCCcc-----cccc-CCCcceEEEecCCc-cc--cChhhcCcCCcceEEcCCCCCCcc-----cccc
Q 042509 526 MEKLRHFMLVLGKSVAFP-----VSIF-KARKLRSLLIVGPI-CE--IPKEIENFMYLRFLKLSKAEIVEL-----PETC 591 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p-----~~~~-~~~~Lr~L~l~~~~-~~--lp~~i~~l~~L~~L~L~~~~i~~l-----p~~i 591 (892)
.+.++.|++++|.+.... ..+. .+++|++|+++++- .. +..-...+.+|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 566778888877765321 1122 22566666666642 11 111122345566666666666521 1112
Q ss_pred -cCCCCCCEEeccCcCCcc----ccchhhhccccCCeeccccccc
Q 042509 592 -CELFNLQTLEMEDCCNLK----RLPQEIGKLVNLRYLIYNDSYL 631 (892)
Q Consensus 592 -~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~~~~~~l 631 (892)
...++|++|+|++|.... .++..+..+++|++|++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 234556666666665211 1333344455555554444444
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=2.8e-06 Score=91.67 Aligned_cols=197 Identities=11% Similarity=0.114 Sum_probs=106.7
Q ss_pred CceecchhhHHHHHHHH-hcCCcccccceEEEEEEecCCchHHHHHHHHhCC---hhhh-cccce---------------
Q 042509 169 DRVCGRDDEKNKLIRKL-LSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND---PDVR-NHFKI--------------- 228 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~---~~~~-~~f~~--------------- 228 (892)
.+++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.+... +... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999998888877 3322 123 899999999999999987762 1000 00000
Q ss_pred -----eEEEEeCCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC
Q 042509 229 -----RMWVCVSDPF-DEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG 302 (892)
Q Consensus 229 -----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~ 302 (892)
.+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012222222211000 00000 00 002346779999999765555555666666554
Q ss_pred CCCcEEEEEcCch-hHH-hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 042509 303 QCGSKILVTTRKE-TVS-RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIGS 380 (892)
Q Consensus 303 ~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 380 (892)
..+..+|++|... .+. ...+....+++.+++.++..+++.+.+......-. -.+..+.|++.++|.+..+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE---TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC---CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567777777653 222 22234568999999999999999887643221111 024567789999999876655443
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=2.5e-05 Score=85.44 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=75.4
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCcCCCCCCCCCCCeEEEcceEEEEeCCcccCCCCCCC
Q 042509 736 ALRPPPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEIMPPLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHS 815 (892)
Q Consensus 736 ~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~ 815 (892)
.+..+.+|+.+.+..+...- -...+..+..|+.+.+....+. -..+..+++|+.+.+.++ ++.++...+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i-~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~------ 317 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRI-GGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFE------ 317 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEE-CSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTT------
T ss_pred cccccccceeEEcCCCccee-eccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhc------
Confidence 34556778888776654322 3444556777877777544211 112667888999888654 6677654332
Q ss_pred CCCCCCCCccceeeccccccccccccccccCcccccCcCCccceeeecccccCcCCCc-CCCCCcceE-EEEc
Q 042509 816 SGPAIAFPKLKHLKFMKLSEWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSLPN-QLLQRTKLN-LNIS 886 (892)
Q Consensus 816 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~-~l~~l~~L~-L~i~ 886 (892)
.+.+|+++.+-+ +++.+. ...+..+.+|+.+.+..+ ++.++. .+..+++|+ ++|.
T Consensus 318 -----~c~~L~~i~lp~--~v~~I~-------~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 318 -----SCTSLVSIDLPY--LVEEIG-------KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -----TCTTCCEECCCT--TCCEEC-------TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred -----CCCCCCEEEeCC--cccEEh-------HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 345666666632 233332 334556788999888644 666655 445678888 7764
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=7.6e-06 Score=85.20 Aligned_cols=184 Identities=16% Similarity=0.136 Sum_probs=100.3
Q ss_pred CCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
-++++|.+..++.+.+.+...... +....+.+.|+|++|+|||+||+.+++ ..... .+.+..+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~---- 86 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSE---- 86 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGG----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHH----
Confidence 356999999999998877432000 001235689999999999999999988 33222 22233221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHH-HHHHHhcCCeEEEEEecCCCC-----------CcCChhhhhhh---cC--CCC
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLL-RIYEAIAKKKFLLVLDDVWND-----------DRTKWEPLNHC---LM--NGQ 303 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDd~w~~-----------~~~~~~~l~~~---l~--~~~ 303 (892)
+... .......... .+......++.+|+|||++.- +......+... +. ...
T Consensus 87 ----------~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 87 ----------LVKK--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ----------GCCC--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ----------HHHh--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1000 0111112222 222333456789999999431 00111122222 21 223
Q ss_pred CCcEEEEEcCchhHHh-h-cc--C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHH
Q 042509 304 CGSKILVTTRKETVSR-M-ME--S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKT 377 (892)
Q Consensus 304 ~gs~iivTtr~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~ 377 (892)
.+..||.||....... . .. . ...+.+...+.++..+++...+...... ...+ ...|++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567788887543211 1 11 1 2478899999999999998876432221 1122 3457777777 4544443
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.20 E-value=1.5e-05 Score=81.66 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=98.4
Q ss_pred CceecchhhHHHHHHHHh---cCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLL---SESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+++. .+.. -+....+.+.|+|++|+|||++|+.+++ ..... .+.+..+...+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--
Confidence 468999988877766543 2110 0012235688999999999999999988 33322 334444331110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCC------------CcCChh---hhhhhcCC--CCCC
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWND------------DRTKWE---PLNHCLMN--GQCG 305 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~------------~~~~~~---~l~~~l~~--~~~g 305 (892)
. ...........+.......+.+|++|+++.- +..... .+...+.. ...+
T Consensus 79 --------~-----~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 --------I-----GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp --------S-----TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred --------c-----cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 0001111222233333456789999999642 111112 22222222 1234
Q ss_pred cEEEEEcCchhH-Hhh-cc--C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 306 SKILVTTRKETV-SRM-ME--S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 306 s~iivTtr~~~v-~~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
..||.||..... ... .. . ...+.+...+.++..+++...+...... .........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 566667755432 111 11 2 3577899999999999998876432221 1112234678888888754 44433
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=6e-06 Score=93.42 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=109.9
Q ss_pred CceecchhhHHHHHHHHhcCCcc-----------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-----------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP 237 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 237 (892)
.+++|++..++.+.+++...... .....+.+.|+|++|+||||+|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 46999999999999998752100 0013468999999999999999999883 3 12 2344555544
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcC---ChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 238 FDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRT---KWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 238 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~---~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
.... +....+........-..-...... .....+++.+||+|+++.-... .+..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4332 333333322111100000000000 0012367889999999643222 224444444332 2335555443
Q ss_pred hh---HHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHhh
Q 042509 315 ET---VSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP-LAAKTIGS 380 (892)
Q Consensus 315 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~ 380 (892)
.. +.........+.+.+++.++..+++...+........ .+....|++.++|.+ -++..+..
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2222233457899999999999999876643222111 234567889999944 45555543
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.19 E-value=4.8e-06 Score=88.49 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=103.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
++++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ...+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHHHH
Confidence 569999999999999997543 2457888888999999999999873 32 22444554331 12 2222211
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC-cCChhhhhhhcCCCCCCcEEEEEcCchh-HHh-hccCCc
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD-RTKWEPLNHCLMNGQCGSKILVTTRKET-VSR-MMESTN 325 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~ 325 (892)
....... ...+++-++|+||++.-. ....+.+...+.....+..+|+||.... +.. ......
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1110000 012477899999996543 3344555555544445667888876543 111 112235
Q ss_pred eEeCCCCCHHHHHHHH-------HHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 326 VMFIEELSESECWRLF-------QQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 326 ~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
.+++.+++.++..+++ .+.+........ + .+....|++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-D--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-C--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-c--HHHHHHHHHhCCCCHHHHH
Confidence 7999999988854332 222211111111 1 2566778888988776433
No 182
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=1.5e-06 Score=92.96 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCC----CCchhhhccCCcEEEEecc
Q 042509 700 KKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAV----FENWIVSLNKLKKLFLINC 775 (892)
Q Consensus 700 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~ 775 (892)
.+++|+.|.|.+|.+... ....+.+ ...+++|++|+|+.|.+... ++..+..+++|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-----------~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-----------VVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-----------HHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchH-----------HHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 357788888877765310 0011111 12356788888877776541 2333456778888888777
Q ss_pred CCC
Q 042509 776 YNC 778 (892)
Q Consensus 776 ~~~ 778 (892)
.+.
T Consensus 318 ~i~ 320 (362)
T 2ra8_A 318 YLS 320 (362)
T ss_dssp BCC
T ss_pred cCC
Confidence 543
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.09 E-value=1.3e-05 Score=84.49 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=89.2
Q ss_pred ceecchhhHHHHHHHHhcCCc---------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 170 RVCGRDDEKNKLIRKLLSESS---------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
.++|.+..++.+.+.+..... ........+.|+|++|+|||++|+.+++...........-++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR---- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH----
Confidence 478999888888766542100 0012345789999999999999998887322121211112333321
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCC---------CcCChhhhhhhcCCCCCCcEEEEE
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWND---------DRTKWEPLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~---------~~~~~~~l~~~l~~~~~gs~iivT 311 (892)
..+.... ...........+.. . +.-+|++|+++.- .......+...+.....+..||.|
T Consensus 108 --------~~l~~~~-~g~~~~~~~~~~~~-~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 108 --------DDLVGQY-IGHTAPKTKEVLKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp --------GGTCCSS-TTCHHHHHHHHHHH-H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred --------HHhhhhc-ccccHHHHHHHHHh-c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111100 01111112222222 2 2349999999632 223334555556555556778888
Q ss_pred cCchhHHhh-------ccC-CceEeCCCCCHHHHHHHHHHHhh
Q 042509 312 TRKETVSRM-------MES-TNVMFIEELSESECWRLFQQLAF 346 (892)
Q Consensus 312 tr~~~v~~~-------~~~-~~~~~l~~L~~~~~~~lf~~~~~ 346 (892)
|........ ... ...+.+.+++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432111 111 25789999999999999988764
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=2.6e-05 Score=82.70 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=87.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
...+.|+|++|+||||||+.+++. ....-..++++++. +....+...+... ... .+.+.+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TIN----EFRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHH----HHHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHhc-C
Confidence 456899999999999999999983 32211234555432 3333443333211 111 1222232 3
Q ss_pred eEEEEEecCCCCCcC--ChhhhhhhcCC-CCCCcEEEEEcCch---------hHHhhccCCceEeCCCCCHHHHHHHHHH
Q 042509 276 KFLLVLDDVWNDDRT--KWEPLNHCLMN-GQCGSKILVTTRKE---------TVSRMMESTNVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 276 r~LlVlDd~w~~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 343 (892)
.-+|++||+..-... ..+.+...+.. ...+..||+||... .+...+.....+++.+ +.++..+++.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 568999999543221 12223333321 12355677777532 2222233335789999 99999999988
Q ss_pred HhhCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 042509 344 LAFFGRSPSECENLEEIGRKIVHKCKGLPLA 374 (892)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 374 (892)
.+......- -.+..+.|++.+ |.+-.
T Consensus 178 ~~~~~~~~l----~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLEL----RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCC----CHHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCC----CHHHHHHHHHhC-CCHHH
Confidence 774322211 145567788888 76653
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2e-05 Score=84.20 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=105.2
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccc-eeEEEEeCCCCCHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFK-IRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~ 246 (892)
++++|.+..++.+...+.... ...+.++|++|+||||+|+.+++. ... .+. .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGI------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSH------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccH------
Confidence 357898888888888886542 223899999999999999999883 211 111 1222222221111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh------cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh-HH-
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAI------AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET-VS- 318 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~- 318 (892)
+.....+.... .+.+-++|+|++..-.....+.+...+........+|++|.... +.
T Consensus 91 ---------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 91 ---------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp ---------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred ---------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 22222222111 23467899999965444445556666655445667777765432 11
Q ss_pred hhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 042509 319 RMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAK 376 (892)
Q Consensus 319 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 376 (892)
...+....+++.+++.++..+.+.+.+......- -.+..+.|++.++|.+--+.
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i----~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL----SPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB----CHHHHHHHHHHHTTCHHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 1123345789999999999998887663222111 13456789999999887543
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=1.5e-06 Score=93.12 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCCchhhhccC--CcEEEEeccC
Q 042509 700 KKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFENWIVSLNK--LKKLFLINCY 776 (892)
Q Consensus 700 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~~~~l~~--L~~L~L~~~~ 776 (892)
.+++|+.|+|+.|.+... ....+...+.++++|+.|+|++|.++. .....+.. ...++++++.
T Consensus 277 ~~~~L~~LdLs~n~L~d~-----------G~~~L~~~L~~l~~L~~L~L~~n~i~d---~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDE-----------GARLLLDHVDKIKHLKFINMKYNYLSD---EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHH-----------HHHHHHTTHHHHTTCSEEECCSBBCCH---HHHHHHHHHCCSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChH-----------HHHHHHhhcccCCcceEEECCCCcCCH---HHHHHHHHHcCCEEEecCCc
Confidence 457788888877776421 112334444456778888888776543 22222332 2556666553
No 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.02 E-value=4.1e-06 Score=80.85 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=38.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..++||+.+++.+.+.+.... .+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987632 345789999999999999999873
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.96 E-value=6.4e-05 Score=77.42 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=90.1
Q ss_pred CceecchhhHHHHHHH-------HhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRK-------LLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
..++|.+..++++... +.... ....+.+.|+|++|+|||+||+.+++. .... .+.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHH-----
Confidence 3578888777666652 32111 134678999999999999999999883 2222 12222221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCC------Cc---CCh-hhhhhhcCC---CCCCcEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWND------DR---TKW-EPLNHCLMN---GQCGSKI 308 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~------~~---~~~-~~l~~~l~~---~~~gs~i 308 (892)
.+.+.. ...........+......+..+|+|||+..- .. ..+ ..+...+.. ......|
T Consensus 100 --------~~~g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 100 --------KMIGFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------GCTTCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------HhcCCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 111100 0000111222233334467889999998421 11 111 223232222 2223446
Q ss_pred EEEcCchhHHhh---ccC-CceEeCCCCCH-HHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC
Q 042509 309 LVTTRKETVSRM---MES-TNVMFIEELSE-SECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG 370 (892)
Q Consensus 309 ivTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 370 (892)
|.||........ .+. ...+++.+++. ++...++.+.. . . ..+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-F----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-S----CHHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-C----CHHHHHHHHHHhcC
Confidence 777776543222 122 45788999988 66666665531 1 1 13446678888877
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=6.2e-06 Score=75.82 Aligned_cols=114 Identities=17% Similarity=0.028 Sum_probs=67.7
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
+++|++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999888754221 1234789999999999999999884211 1112 23 555543221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCc
Q 042509 250 GLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRK 314 (892)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 314 (892)
.... ..+.. . +.-.|++|++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~~---~~~~~-a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIAL-A--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHH-H--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHH-c--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 11111 1 2236899999765555555666666544445677777764
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00016 Score=76.30 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=103.6
Q ss_pred CceecchhhHHHHHHHHhcCC------cccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSES------SEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.+++|.+..++.+.+.+..+. .......+.+.++|++|+|||+||+.+++ .....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------H
Confidence 468999999999988773110 00112345789999999999999999988 333222 223321 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCcC-------C----hhhhhhhcC---CCCCCcE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDRT-------K----WEPLNHCLM---NGQCGSK 307 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~~-------~----~~~l~~~l~---~~~~gs~ 307 (892)
+..... ...+.....+.+ .-..++.+|+||++..-... . ...+...+. ....+..
T Consensus 87 ----l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 ----LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp ----HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred ----Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 111110 111222222322 23456789999999532110 0 122333332 2334556
Q ss_pred EEEEcCchhH-Hhhc--cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 042509 308 ILVTTRKETV-SRMM--ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKTIGS 380 (892)
Q Consensus 308 iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 380 (892)
||.||..... ...+ .-...+.+...+.++..+++...+........ ......|++.+.| .+-.+..+..
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6667765321 1111 12346788889999999999987743221111 2345678888887 4555554443
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.94 E-value=9.3e-06 Score=79.57 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS 256 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 256 (892)
.++.+.+++..... ......+.|+|.+|+||||||+.+++ ........++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555555544321 01126789999999999999999998 343334456676543 444444443321
Q ss_pred CCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhh--hhh-hcCCC-CCCcEEEEEcCc
Q 042509 257 NLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEP--LNH-CLMNG-QCGSKILVTTRK 314 (892)
Q Consensus 257 ~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 314 (892)
.........+. .. -+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~----~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK----KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH----HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc----CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11233322222 22 389999997654445433 222 22211 234568888874
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.91 E-value=0.00012 Score=78.24 Aligned_cols=187 Identities=16% Similarity=0.101 Sum_probs=100.9
Q ss_pred CceecchhhHHHHHHHHhcC---Cc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE---SS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.+++|.+..++.+.+.+..+ .. ......+-|.|+|++|+|||+||+.+++ ..... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~------- 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------- 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH-------
Confidence 46899999999998877321 00 0011234588999999999999999998 33322 2223221
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCcC-----------ChhhhhhhcC---CCCCCcE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDRT-----------KWEPLNHCLM---NGQCGSK 307 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~~-----------~~~~l~~~l~---~~~~gs~ 307 (892)
++..... .. .+.....+.. ....++.+|+||++..-... ....+...+. ....+..
T Consensus 119 ---~l~~~~~-----g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 ---DLVSKWM-----GE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp ---HHHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred ---HHhhhhc-----ch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1111111 11 1222222222 23467889999999532111 0122322222 1233555
Q ss_pred EEEEcCchh-HHhh-c-cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 042509 308 ILVTTRKET-VSRM-M-ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKTIGS 380 (892)
Q Consensus 308 iivTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 380 (892)
||.||.... +... . .-...+.+...+.++..+++............ ......|++.+.| .+-.|..+..
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432 1111 1 22357788999999999999887643221111 3345678888988 4545555443
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.00044 Score=72.81 Aligned_cols=188 Identities=15% Similarity=0.111 Sum_probs=101.6
Q ss_pred CceecchhhHHHHHHHHhcC---Cc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE---SS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+.+..+ .. ......+.|.++|++|+|||+||+.+++. ... ...+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHH----
Confidence 46899999988888776421 00 00123467889999999999999999983 211 112233333211
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCc------CC-h----hhhhhhcCC---CCCCcE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDR------TK-W----EPLNHCLMN---GQCGSK 307 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~------~~-~----~~l~~~l~~---~~~gs~ 307 (892)
... .... +.....+.+ .-..++.+|++|++..-.. .. . ..+...+.. ...+..
T Consensus 84 ----------~~~-~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ----------SKW-LGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ----------CSS-CCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ----------hhh-hhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 0111 222223322 3346788999999953210 00 1 112222221 223455
Q ss_pred EEEEcCchh-HHhh-c-cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHHhh
Q 042509 308 ILVTTRKET-VSRM-M-ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL-PLAAKTIGS 380 (892)
Q Consensus 308 iivTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~~~ 380 (892)
||.||.... +... . .-...+.+...+.++..+++........... -......|++.+.|. +-.+..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL----TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC----CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432 1111 1 1235778888999999999988763222111 134467789999886 544555544
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.85 E-value=0.00011 Score=78.75 Aligned_cols=187 Identities=11% Similarity=0.070 Sum_probs=102.9
Q ss_pred CceecchhhHHHHHHHHhcC----Cc--ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE----SS--EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+.+... .- ......+.|.|+|++|+|||+||+.+++ .... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhc---
Confidence 46899999999998877421 00 0012345789999999999999999987 3322 233444432111
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCc-----------CChhhhhhhcCC----CCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDR-----------TKWEPLNHCLMN----GQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~-----------~~~~~l~~~l~~----~~~gs 306 (892)
. ...........+.. .-..++.+|+||++..-.. .....+...+.. ...+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 00111222222222 2235678999999832100 011223333322 12344
Q ss_pred EEEEEcCchh-HHhh-ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 042509 307 KILVTTRKET-VSRM-MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKTIGS 380 (892)
Q Consensus 307 ~iivTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 380 (892)
.||.||.... +... ... ...+.+...+.++..+++...+....... ..+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 2111 112 24678899999999999987764322111 13456778888988 5556665544
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.84 E-value=2.9e-05 Score=93.62 Aligned_cols=152 Identities=17% Similarity=0.291 Sum_probs=82.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc-----c-c-eeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH-----F-K-IRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f-~-~~~wv~~s~~~~~~ 241 (892)
+.++||+.+++++.+.+.... ...+.++|.+|+||||+|+.+++. .... . . .++++.++...
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~--- 238 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLL--- 238 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhh---
Confidence 468999999999999997643 234789999999999999999883 3110 1 1 23344332210
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-c-CCeEEEEEecCCCCC--------cCChhhhhhhcCCCCCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-A-KKKFLLVLDDVWNDD--------RTKWEPLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDd~w~~~--------~~~~~~l~~~l~~~~~gs~iivT 311 (892)
. + .....+.......+.+.+ . +++.+|++|++..-. .+....+...+..+ +..+|.|
T Consensus 239 -------~---g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~a 305 (854)
T 1qvr_A 239 -------A---G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEE
T ss_pred -------c---c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEe
Confidence 0 0 001112333333333333 2 467899999996421 11112243444332 3345655
Q ss_pred cCchhHH-----h-hccCCceEeCCCCCHHHHHHHHHHH
Q 042509 312 TRKETVS-----R-MMESTNVMFIEELSESECWRLFQQL 344 (892)
Q Consensus 312 tr~~~v~-----~-~~~~~~~~~l~~L~~~~~~~lf~~~ 344 (892)
|...... . .......+.+.+++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5543321 1 1122346889999999999998754
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=2.2e-05 Score=75.16 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=64.6
Q ss_pred chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 174 RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
....++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 33444555555543221 234689999999999999999999842212222 234443 34444444443322
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhh--hhhhcCC-CCCCcEEEEEcCc
Q 042509 254 ETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEP--LNHCLMN-GQCGSKILVTTRK 314 (892)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 314 (892)
... .... +.+. +.-++||||++....+.|.. +...+.. ...|..||+||..
T Consensus 89 ~~~-----~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-----TKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-----SHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-----HHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1122 2222 45589999997434444542 3333322 1246678888864
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=0.00046 Score=71.98 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=99.0
Q ss_pred CceecchhhHHHHHHHHhcCCc------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+.+..+.. ......+.+.|+|++|+||||+|+.+++ ..... .+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHhh---
Confidence 4689999999999887743110 0011245789999999999999999988 33222 23344332110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCCcC-------C----hhhhhhhc---CCC--CCC
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDDRT-------K----WEPLNHCL---MNG--QCG 305 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~~~-------~----~~~l~~~l---~~~--~~g 305 (892)
. ...........+.. ....++.+|++|++..-... . ...+...+ +.. +.+
T Consensus 93 -----------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 01112222222222 23456789999999432110 0 01122211 111 124
Q ss_pred cEEEEEcCchh-----HHhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHH
Q 042509 306 SKILVTTRKET-----VSRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTI 378 (892)
Q Consensus 306 s~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 378 (892)
..||.||.... +.+. -...+.+...+.++..+++...+....... -.+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776532 2221 124677788888888888877653322111 13456678888988775 44444
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=6.3e-05 Score=78.23 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=92.2
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChh-hh-cccceeEEEEeCC-CCCHHHHHHHHHH
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPD-VR-NHFKIRMWVCVSD-PFDEFSVAKSIIE 249 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~ 249 (892)
|-++.++.+...+... +.+...++|++|.||||+|+.+.+.-. .. .+.+ ..++..+. ...+++ .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 3445566677766543 257899999999999999999876210 11 1223 34444332 222222 223333
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCch-hHHhhccCCceEe
Q 042509 250 GLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKE-TVSRMMESTNVMF 328 (892)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 328 (892)
.+...+ ..+++-++|+|+++.-.....+.+...+....+.+.+|++|.+. .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332211 12567789999997666666777888887776777777766443 333333334 999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 042509 329 IEELSESECWRLFQQLA 345 (892)
Q Consensus 329 l~~L~~~~~~~lf~~~~ 345 (892)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.77 E-value=6e-05 Score=83.92 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=79.8
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhccc------ce-eEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF------KI-RMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~-~~wv~~s~~~~~~ 241 (892)
+.+|||+.+++.+...+.... ..-+.++|.+|+|||++|+.+++ .+...+ +. .+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999997643 23467999999999999999988 332111 11 2222222
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh--
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR-- 319 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-- 319 (892)
....+. ...... ..+...-..++.++++|. ..+....+...+..+ ..++|.||.......
T Consensus 246 -------~~~~g~--~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 000000 011112 222222335678889991 122333344444322 345666665443111
Q ss_pred -----hccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 320 -----MMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 320 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.......+.+.+.+.++..+++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11233479999999999999998754
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.73 E-value=0.00039 Score=72.56 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=99.2
Q ss_pred CceecchhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
++++|.+..++.+.+.+...-. -.-...+.+.|+|++|+|||+||+.+++ ..... ++.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v----~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISI----KGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEE----CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEE----EhH
Confidence 4689999998888887753200 0011345789999999999999999998 33322 2222 222
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC----------cCC----hhhhhhhcCC--CCCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD----------RTK----WEPLNHCLMN--GQCG 305 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~----------~~~----~~~l~~~l~~--~~~g 305 (892)
++..... +.. .......+.......+.+|++|++..-. ... ...+...+.. ...+
T Consensus 84 ~l~~~~~----g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF----GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH----TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc----Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 3332221 111 1112223333334667899999995200 001 1333333322 2335
Q ss_pred cEEEEEcCchh-HHhh-cc--C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHH
Q 042509 306 SKILVTTRKET-VSRM-ME--S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLA 374 (892)
Q Consensus 306 s~iivTtr~~~-v~~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 374 (892)
..||.||.... +... .. . ...+.+...+.++..+++......... ....++ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 56777776543 2111 12 2 347889999999999999876633221 111223 3456667776643
No 201
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=0.00011 Score=77.47 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=74.6
Q ss_pred ceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
.++|.+..++.+...+..... ........+.++|.+|+|||++|+.+.+ .....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHH
Confidence 478999998888887764310 0112246899999999999999999988 332222234556655433222 1222
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEcCc
Q 042509 247 IIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTTRK 314 (892)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 314 (892)
++..... .........+...+. ....-+++||++..........+...+..+. ....||.||..
T Consensus 95 l~g~~~~-~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPG-YVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTT-STTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCc-cccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 2211100 001111112222222 2344699999996655555555655553321 23347777765
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=3.4e-06 Score=78.87 Aligned_cols=101 Identities=8% Similarity=0.014 Sum_probs=68.1
Q ss_pred CCchhhhccCCcEEEEeccCCCC-cCCCCCCCCCCCeEEEcceE-EEEeCCcccCCCCCCCCCCCCCCCccceeeccccc
Q 042509 757 FENWIVSLNKLKKLFLINCYNCE-IMPPLGKLPFLESLKIRNMN-VKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLS 834 (892)
Q Consensus 757 ~p~~~~~l~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~ 834 (892)
+|.....-.+|+.|+|++|.+.. .+..+..+++|++|+|++|. |++.+...+... ....++|++|++.+|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-------~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-------ENLQKSMLEMEIISCG 125 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-------HHHHHHCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-------ccccCCCCEEEcCCCC
Confidence 45433223479999999997543 34457889999999999997 665443333210 0013579999999988
Q ss_pred cccccccccccCcccccCcCCccceeeecccccCcCC
Q 042509 835 EWEEWDFGITRSGKEEITIMPQLNSLEIILCAKLKSL 871 (892)
Q Consensus 835 ~l~~~~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l 871 (892)
++++-. . ..+..+|+|+.|+|++|++++..
T Consensus 126 ~ITD~G------l-~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 126 NVTDKG------I-IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCHHH------H-HHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCHHH------H-HHHhcCCCCCEEECCCCCCCCch
Confidence 766543 1 22346899999999999988753
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.68 E-value=0.00063 Score=75.07 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=99.7
Q ss_pred CceecchhhHHHHHHHHhcC----C--cccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE----S--SEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+.+..+ . .......+.|.++|++|+|||+||+.+++. . ...-++.++.. +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH----H
Confidence 46899999999998877321 0 001123467899999999999999999983 2 11223333321 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc-------CCh----hhhhhhcCC---CCCCcEE
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR-------TKW----EPLNHCLMN---GQCGSKI 308 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~-------~~~----~~l~~~l~~---~~~gs~i 308 (892)
+.. ...+. .......+. ...-..++.+|+||++..-.. ... ..+...+.. ...+..|
T Consensus 204 l~~----~~~g~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVS----KWLGE--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHh----hhcch--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 111 11110 111222222 222245678999999964211 011 112222221 2345667
Q ss_pred EEEcCchhH-Hhh-ccC-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHh
Q 042509 309 LVTTRKETV-SRM-MES-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAKTIG 379 (892)
Q Consensus 309 ivTtr~~~v-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~ 379 (892)
|.||..... ... ... ...+.+...+.++..++|........... -......|++.+.| .+-.+..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL----TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 767754321 111 122 24677888888888899988763221111 12345678888988 454554443
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.68 E-value=0.0006 Score=74.11 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=98.6
Q ss_pred CceecchhhHHHHHHHHhcCCc------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.+++|.+..++.+.+.+..... ......+.|.|+|.+|+|||+||+.+++ +.... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc--
Confidence 4699999999999888732100 0011245789999999999999999987 32222 233333221110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCC-------cCCh----hhhhhhcC---C-CCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDD-------RTKW----EPLNHCLM---N-GQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~-------~~~~----~~l~~~l~---~-~~~gs 306 (892)
. .... ......+.+ .-...+.+|+||+++.-. .... ..+...+. . .....
T Consensus 188 --------~-----~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 --------Y-----VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp -----------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --------c-----cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 0011 122222222 223456799999994210 0001 11222221 1 12234
Q ss_pred EEEEEcCchh-HHhh-ccCC-ceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchH-HHHHHh
Q 042509 307 KILVTTRKET-VSRM-MEST-NVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPL-AAKTIG 379 (892)
Q Consensus 307 ~iivTtr~~~-v~~~-~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 379 (892)
.||.||.... +... .... ..+.+...+.++..+++...+....... ..+....|++.+.|..- ++..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5565665432 2111 1222 4688999999999999988764322211 13456788888888554 554443
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.67 E-value=1.7e-05 Score=72.70 Aligned_cols=109 Identities=9% Similarity=0.132 Sum_probs=61.7
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
.++|++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+.+... ..+.++++. -....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHh------
Confidence 588999999988888754211 123478999999999999999988422 222222221 00111
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC-CCCcEEEEEcC
Q 042509 250 GLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG-QCGSKILVTTR 313 (892)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~-~~gs~iivTtr 313 (892)
...+.+.. +.-.+++|++..-.......+...+... ..+.+||.||.
T Consensus 67 ---------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 ---------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ---------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ---------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 11111111 2236889999765544445555555432 34567888775
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=1.3e-05 Score=77.03 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=42.0
Q ss_pred hhhcCcCCcceEEcCCCCCC-----cccccccCCCCCCEEeccCcCCcc----ccchhhhccccCCeecc--ccccccc-
Q 042509 566 KEIENFMYLRFLKLSKAEIV-----ELPETCCELFNLQTLEMEDCCNLK----RLPQEIGKLVNLRYLIY--NDSYLHY- 633 (892)
Q Consensus 566 ~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~~--~~~~l~~- 633 (892)
..+....+|++|+|++|.|. .+...+...++|++|+|++|.... .+...+...++|++|.+ ++|.++.
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 33444555556666655554 233334444555666665555211 13344445555555544 4444432
Q ss_pred ----ccccccCCcCCCcCCceEec
Q 042509 634 ----LPRGIERLTCLRTLSEFVVS 653 (892)
Q Consensus 634 ----lp~~i~~L~~L~~L~l~~~~ 653 (892)
+...+...++|++|++..|.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCcCEEeccCCC
Confidence 22233444555555555443
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.61 E-value=0.00033 Score=74.32 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
+.++|.+..++.+...+..... .......+.++|++|+||||||+.++. .....|. ....+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEechHhcCH--------
Confidence 3578888777777666643210 011345789999999999999999998 3322221 1111100111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC------------------CCcEE-E
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ------------------CGSKI-L 309 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~------------------~gs~i-i 309 (892)
.+.. .+...+ .++-++++|++..-.....+.+...+.... +...+ -
T Consensus 91 -------------~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111 111122 233467788875432222333322221110 01122 2
Q ss_pred EEcCchhHHhhcc-C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 042509 310 VTTRKETVSRMME-S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLPLAAKTIG 379 (892)
Q Consensus 310 vTtr~~~v~~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 379 (892)
.|++...+...+. . .-...+.+.+.++..+++.+.+...... .-.+.+..|+++++|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHHH
Confidence 3444433322111 1 1257899999999999998876322111 124568889999999997654443
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=0.0002 Score=79.52 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=61.7
Q ss_pred EEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEc----------C----chhH-HhhccCCceEeCCCCCHHHHHHHHH
Q 042509 278 LLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTT----------R----KETV-SRMMESTNVMFIEELSESECWRLFQ 342 (892)
Q Consensus 278 LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf~ 342 (892)
++++|++..-+...++.+...+...... .+|+.| . ...+ ....+....+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999766666777787777655444 344343 2 1111 1122344568999999999999998
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHHhc-CCchHHHHHHhh
Q 042509 343 QLAFFGRSPSECENLEEIGRKIVHKC-KGLPLAAKTIGS 380 (892)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~i~~~c-~G~Plai~~~~~ 380 (892)
..+...... --.+....|++.+ +|.|..+..+..
T Consensus 377 ~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 377 IRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 775321111 1144567788888 888876655443
No 209
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=8.7e-06 Score=76.13 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=52.8
Q ss_pred CCCCCeEEEeeecCCCCCCchhhhccCCcEEEEeccCCCCc--CCCCCCC----CCCCeEEEcceE-EEEeCCcccCCCC
Q 042509 740 PPNLESLEIWEYKGKAVFENWIVSLNKLKKLFLINCYNCEI--MPPLGKL----PFLESLKIRNMN-VKKVGDEFLGIKS 812 (892)
Q Consensus 740 ~~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--~~~l~~l----~~L~~L~L~~~~-l~~~~~~~~~~~~ 812 (892)
..+|+.|++++|.++..--..+..+++|+.|+|++|...++ +..++.+ ++|++|+|++|. |++.+...+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L---- 135 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL---- 135 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG----
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH----
Confidence 34677777777765432222345677777888877754432 2223433 467778877776 665443332
Q ss_pred CCCCCCCCCCCccceeeccccccccc
Q 042509 813 NHSSGPAIAFPKLKHLKFMKLSEWEE 838 (892)
Q Consensus 813 n~~~~~~~~f~~L~~L~l~~l~~l~~ 838 (892)
..+++|++|.+.+|+.++.
T Consensus 136 -------~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -------HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -------GGCTTCCEEEEESCTTCCC
T ss_pred -------hcCCCCCEEECCCCCCCCc
Confidence 2467777777777766554
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.54 E-value=0.00013 Score=74.70 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.9
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.++|.+..+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 588999999988877654221 1245789999999999999999884
No 211
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.00031 Score=76.74 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=69.9
Q ss_pred cceEEEEEeCCCCCcc-ccccCCCcceEEEecCC----ccccC-hhhcCcCCcceEEcCCCCCCcccc-cccCCCCCCEE
Q 042509 528 KLRHFMLVLGKSVAFP-VSIFKARKLRSLLIVGP----ICEIP-KEIENFMYLRFLKLSKAEIVELPE-TCCELFNLQTL 600 (892)
Q Consensus 528 ~lr~L~l~~~~~~~~p-~~~~~~~~Lr~L~l~~~----~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 600 (892)
.++.+.+..+ ++.+. ..|.+|.+|+++.+..+ +..+. ..|.++..|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777643 55553 35778899999988653 44443 34677888888777654 555543 46778888888
Q ss_pred eccCcCCccccc-hhhhccccCCeecccccccccccccccCCcCCCcCC
Q 042509 601 EMEDCCNLKRLP-QEIGKLVNLRYLIYNDSYLHYLPRGIERLTCLRTLS 648 (892)
Q Consensus 601 ~L~~~~~~~~lp-~~i~~l~~L~~L~~~~~~l~~lp~~i~~L~~L~~L~ 648 (892)
.+..+ +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ 188 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIH 188 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEE
T ss_pred cccce--eeeecccceecccccccccccce-eeEeccccccccceeEEE
Confidence 88653 33333 45667777777744332 344443322334455443
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.52 E-value=0.00049 Score=76.45 Aligned_cols=185 Identities=12% Similarity=0.087 Sum_probs=101.3
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
..++|.+..++++.+++...... .....+-|.|+|.+|+|||++|+.+.+ ..... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEch------
Confidence 35899999999998877532000 011235689999999999999999987 33222 2333321
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc-----------CChhhhhhhcCC--CCCCcEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR-----------TKWEPLNHCLMN--GQCGSKI 308 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~-----------~~~~~l~~~l~~--~~~gs~i 308 (892)
++...+. ..........+.....+++.+|+||++..-.. .....+...+.. ...+..|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 11112223334444457788999999832100 011223333332 2234556
Q ss_pred EEEcCchh-HHhhc----cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc-hHHHHHH
Q 042509 309 LVTTRKET-VSRMM----ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL-PLAAKTI 378 (892)
Q Consensus 309 ivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~ 378 (892)
|.||.... +...+ .-...+.+...+.++..+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 66766542 22221 11346889999999999999887633221 111223 4567777774 5444443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.49 E-value=4.3e-05 Score=70.24 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD 236 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 236 (892)
..++|+|..|+|||||++.++.. ....=..++++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHH
Confidence 57999999999999999999984 222111256665443
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.48 E-value=0.00048 Score=82.12 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=88.1
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc------ccceeEEE-EeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN------HFKIRMWV-CVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv-~~s~~~~~~ 241 (892)
+.++||+.+++++.+.|.... ..-+.|+|.+|+||||+|+.+.+. +.. .....+|. ..+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~----- 252 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGS----- 252 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHH-----
Confidence 468999999999999997643 245689999999999999999873 211 12233332 1111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCC--------cCC-hhhhhhhcCCCCCCcEEEEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDD--------RTK-WEPLNHCLMNGQCGSKILVT 311 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~--------~~~-~~~l~~~l~~~~~gs~iivT 311 (892)
+ +.+ .......+.....+.+.+ ..++.+|++|++..-. ... ...+...+.. .+..+|.+
T Consensus 253 -l-------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~a 321 (758)
T 1r6b_X 253 -L-------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGS 321 (758)
T ss_dssp ----------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEE
T ss_pred -H-------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEE
Confidence 0 000 111223444444444444 3457899999996421 001 1112222222 24566666
Q ss_pred cCchhHHhh-------ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 312 TRKETVSRM-------MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 312 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
|........ ......+.+.+.+.++..+++....
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 665443211 1122368899999999999887644
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.47 E-value=0.0014 Score=66.67 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=92.8
Q ss_pred CceecchhhHHHHHHHHh---cCCcc---cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLL---SESSE---EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++++.+.+. ....- .....+-+.|+|++|+||||||+.+++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468999988777765432 21100 0011234889999999999999999873 32222 3333222100
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc---------C-----ChhhhhhhcCC--CCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR---------T-----KWEPLNHCLMN--GQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~---------~-----~~~~l~~~l~~--~~~gs 306 (892)
.. ...........+.......+.++++|++..-.. . ....+...+.. ...+.
T Consensus 84 -------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 011122223333334445678999999832100 0 01112222221 22345
Q ss_pred EEEEEcCchh-HHhhc-c---CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCC-chHHHH
Q 042509 307 KILVTTRKET-VSRMM-E---STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKG-LPLAAK 376 (892)
Q Consensus 307 ~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~ 376 (892)
.||.||...+ +.... . -...+.+...+.++..+++..+..... ...... ...++..+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 5677776543 21111 1 134677888888888888877653211 111111 2346777777 665444
No 216
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0024 Score=67.99 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=96.7
Q ss_pred CceecchhhHHHHHHHHhcCC---c----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSES---S----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
+++.|-++.+++|.+.+.-+- + -+-...+-|.++|++|.|||.||+++++ .....| +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh---
Confidence 468899998888877654310 0 0112346688999999999999999998 344333 333332211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHH-HHhcCCeEEEEEecCCCCCc--------CC------hhhhhhhcCC--CCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIY-EAIAKKKFLLVLDDVWNDDR--------TK------WEPLNHCLMN--GQC 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDd~w~~~~--------~~------~~~l~~~l~~--~~~ 304 (892)
.. ...+-+.....+. ..-+..+.+|++|+++.--. .. ...+...+.. ...
T Consensus 220 -----------sk--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 220 -----------QK--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -----------CS--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -----------cc--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 0011112222222 22246789999999963110 00 1122222222 233
Q ss_pred CcEEEEEcCchhH-----HhhccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 305 GSKILVTTRKETV-----SRMMESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 305 gs~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
+..||.||...+. .+.-.-...+.+..-+.++..++|+.+.-.. .....-++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-NLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-BCCSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHCCCCC
Confidence 4456667754322 1111225688898888988899998765322 11122233 45777777743
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.43 E-value=0.00052 Score=72.08 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=84.1
Q ss_pred CceecchhhHHHHHHHHhcC---Cc-----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-
Q 042509 169 DRVCGRDDEKNKLIRKLLSE---SS-----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD- 239 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~- 239 (892)
..++|.+..++.+...+... .. ........+.++|.+|+|||++|+.+.+ .... ..+.+.++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEcchhcccC
Confidence 45899999999998877541 00 0001235688999999999999999988 3322 233444433211
Q ss_pred ------HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCC------------hhhhhhhcCC
Q 042509 240 ------EFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTK------------WEPLNHCLMN 301 (892)
Q Consensus 240 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~------------~~~l~~~l~~ 301 (892)
....+.++.....+ .+.. .+++.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11222222221100 0000 1235699999996533332 3344444432
Q ss_pred C----------CCCcEEEEEcC----ch-hHHh-hccCC-ceEeCCCCCHHHHHHHHHH
Q 042509 302 G----------QCGSKILVTTR----KE-TVSR-MMEST-NVMFIEELSESECWRLFQQ 343 (892)
Q Consensus 302 ~----------~~gs~iivTtr----~~-~v~~-~~~~~-~~~~l~~L~~~~~~~lf~~ 343 (892)
. ..+..+|.|+. .. .+.. ..+.. ..+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 12445565542 11 1111 11222 4689999999999988874
No 218
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.43 E-value=0.0014 Score=71.53 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=71.3
Q ss_pred cccCCC-cceEEEecCCccccC-hhhcCcCCcceEEcCCCC---CCcccc-cccCCCCCCEEeccCcCCccccc-hhhhc
Q 042509 545 SIFKAR-KLRSLLIVGPICEIP-KEIENFMYLRFLKLSKAE---IVELPE-TCCELFNLQTLEMEDCCNLKRLP-QEIGK 617 (892)
Q Consensus 545 ~~~~~~-~Lr~L~l~~~~~~lp-~~i~~l~~L~~L~L~~~~---i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~ 617 (892)
.|.+++ .|+++.+..++..+. ..|.+|.+|+.+.+..+. ++.++. .|..+.+|+.+.+..+ +..++ ..+..
T Consensus 58 aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhh
Confidence 455664 599999988888875 458899999999998653 666654 4778888988887653 44444 45678
Q ss_pred cccCCeecccccccccccc-cccCCcCCCcCCce
Q 042509 618 LVNLRYLIYNDSYLHYLPR-GIERLTCLRTLSEF 650 (892)
Q Consensus 618 l~~L~~L~~~~~~l~~lp~-~i~~L~~L~~L~l~ 650 (892)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+.
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hcccccccccce-eeeecccceeccccccccccc
Confidence 889998855432 344443 35667777766543
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.42 E-value=0.00025 Score=73.91 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=36.4
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+.++|++..+.++.+.+..-.. ....|.|+|.+|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3589999999999888765321 123578999999999999999987
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=5.9e-05 Score=72.46 Aligned_cols=107 Identities=14% Similarity=0.029 Sum_probs=83.2
Q ss_pred cccceEEEEEeC-CCCC-----ccccccCCCcceEEEecCC-cc-----ccChhhcCcCCcceEEcCCCCCCc-----cc
Q 042509 526 MEKLRHFMLVLG-KSVA-----FPVSIFKARKLRSLLIVGP-IC-----EIPKEIENFMYLRFLKLSKAEIVE-----LP 588 (892)
Q Consensus 526 ~~~lr~L~l~~~-~~~~-----~p~~~~~~~~Lr~L~l~~~-~~-----~lp~~i~~l~~L~~L~L~~~~i~~-----lp 588 (892)
.+++++|++++| .+.. +...+...++|++|+++++ +. .+...+.....|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999998 7643 4456677899999999985 22 345566777899999999999983 67
Q ss_pred ccccCCCCCCEEec--cCcCCcc----ccchhhhccccCCeecccccccc
Q 042509 589 ETCCELFNLQTLEM--EDCCNLK----RLPQEIGKLVNLRYLIYNDSYLH 632 (892)
Q Consensus 589 ~~i~~L~~L~~L~L--~~~~~~~----~lp~~i~~l~~L~~L~~~~~~l~ 632 (892)
..+...++|++|+| ++|.... .+...+...++|++|.++.|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 77888899999999 7787332 25566677899999988877665
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00019 Score=72.46 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=34.5
Q ss_pred cChhhcCcCCcceEEcCCCCCCcccccccCCC--CCCEEeccCcCCccccc-------hhhhccccCCee
Q 042509 564 IPKEIENFMYLRFLKLSKAEIVELPETCCELF--NLQTLEMEDCCNLKRLP-------QEIGKLVNLRYL 624 (892)
Q Consensus 564 lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp-------~~i~~l~~L~~L 624 (892)
+|..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| ..+..+++|+.|
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence 344556677777777777776655 2233333 67777777776444444 124555666655
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00039 Score=82.79 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=80.3
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcc------cceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNH------FKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 242 (892)
+.+|||+.+++++...|.... ..-+.++|.+|+|||++|+.+.+. +... ....+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~-~~~~~------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRV-MTLDM------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCE-ECC--------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeE-EEecc------
Confidence 469999999999999997643 234789999999999999999873 2110 11111 11111
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHHh---
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVSR--- 319 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~--- 319 (892)
.....+ .....+ ...+......++.+|++|.- .+....+...+.. ...++|.||.......
T Consensus 245 -----g~~~~G--~~e~~l---~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRG--EFEDRL---KKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred -----cccccc--hHHHHH---HHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 000000 001112 22233333467789999921 1222334333332 2456666665444111
Q ss_pred ----hccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 320 ----MMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 320 ----~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.......+.+...+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11223578999999999999998654
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0013 Score=70.97 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=90.9
Q ss_pred CCceecchhhHHHHHHHHhcCCc-------ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESS-------EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
-+++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+++++ ....+| +.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc-
Confidence 35689999999888876642110 0112356689999999999999999998 343333 3343332110
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHH-HHHhcCCeEEEEEecCCC------CCc---C-C----hhhhhhhcC--CCC
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRI-YEAIAKKKFLLVLDDVWN------DDR---T-K----WEPLNHCLM--NGQ 303 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDd~w~------~~~---~-~----~~~l~~~l~--~~~ 303 (892)
. .....+.....+ ...-...+.+|++|++.. ... . . ...+...+. ...
T Consensus 245 -------------~--~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 -------------K--YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------S--SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------c--ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 001111122222 222346689999999842 000 0 0 112222222 223
Q ss_pred CCcEEEEEcCchh-HHhhc---cC-CceEeCCCCCH-HHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 304 CGSKILVTTRKET-VSRMM---ES-TNVMFIEELSE-SECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 304 ~gs~iivTtr~~~-v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
.+..||.||...+ +-..+ +. ...+.+..++. ++..++|..+.-... ....-++ ..|++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCCH----HHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHHCCCC
Confidence 4556777775432 21111 22 34677766654 445566665543221 1111233 3567777764
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0023 Score=69.25 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=97.1
Q ss_pred CCceecchhhHHHHHHHHhcCC---c----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSES---S----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
=+++.|-++.+++|.+.+.-+- + -+-...+-|.++|++|.|||+||+++++ .....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc-
Confidence 3468899998888877664311 0 0112356789999999999999999998 343332 3343332110
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHH-HHhcCCeEEEEEecCCCCC------cCC--------hhhhhhhcC--CCC
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIY-EAIAKKKFLLVLDDVWNDD------RTK--------WEPLNHCLM--NGQ 303 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDd~w~~~------~~~--------~~~l~~~l~--~~~ 303 (892)
. .....+.....+. ..-...+.+|++|+++.-- ... ...+...+. ...
T Consensus 254 -------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 0111112222222 2234678999999995310 000 112333232 223
Q ss_pred CCcEEEEEcCchhHH-hhc-c---CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 304 CGSKILVTTRKETVS-RMM-E---STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 304 ~gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
.+..||.||...+.. ..+ . -...+.+..-+.++..++|+.+....... ..-++ ..|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCH----HHHHHhCCCCC
Confidence 355677777654322 111 1 13467788778888888888765432211 11233 45777887753
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.28 E-value=0.0002 Score=85.33 Aligned_cols=156 Identities=14% Similarity=0.242 Sum_probs=89.2
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+. ....-...+.++++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4689999999988888764321 01123457999999999999999999883 3222233455555432110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCC-----------CCCcEEEEEcCc
Q 042509 246 SIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNG-----------QCGSKILVTTRK 314 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 314 (892)
. ......+...++ ....-+|+||++..........+...+..+ .....||+||..
T Consensus 564 ---------~--~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------H--STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------C--CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------c--ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 000111111121 123348999999765555555666555432 134578888873
Q ss_pred h-----h----HHhh-----ccC-CceEeCCCCCHHHHHHHHHHHh
Q 042509 315 E-----T----VSRM-----MES-TNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 315 ~-----~----v~~~-----~~~-~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
. . +... ... ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 1111 122 2478899999988888887643
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0053 Score=66.22 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=94.8
Q ss_pred CceecchhhHHHHHHHHhcC---Cc----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE---SS----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
+++.|-++.+++|.+.+.-+ .+ -+-...+-|.++|++|.|||+||+++++ +....| +.+..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHH-----
Confidence 46889999888887765321 00 0112356788999999999999999998 344333 3333322
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHH-HHHhcCCeEEEEEecCCCCC------cCC--------hhhhhhhcCC--CCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRI-YEAIAKKKFLLVLDDVWNDD------RTK--------WEPLNHCLMN--GQC 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDd~w~~~------~~~--------~~~l~~~l~~--~~~ 304 (892)
+... ....-+.....+ ...-...+.+|++|++...- ... ...+...+.. ...
T Consensus 279 ---------L~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ---------LVQK--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------GCCC--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hhcc--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1100 011111222222 22234678999999995311 000 0112222221 223
Q ss_pred CcEEEEEcCchh-HHhh---cc-CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 305 GSKILVTTRKET-VSRM---ME-STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 305 gs~iivTtr~~~-v~~~---~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
+..||.||...+ +-.. .+ -...+.+..-+.++..++|+.+...-. ....-++ ..|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCC
Confidence 445666775432 2111 12 245788888888888999987653321 1111233 4577778775
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.18 E-value=0.00023 Score=73.11 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred CceecchhhHHHHHHHHhcCCcc------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
++++|.+..++.+.+.+..-..+ .....+-+.|+|++|+|||+||+.+++. ....|- .+..+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH----
Confidence 46999998888887765410000 0011233789999999999999999883 332221 11111100
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCc---------------CChhhhhhhcCCC---CC
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDR---------------TKWEPLNHCLMNG---QC 304 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~---------------~~~~~l~~~l~~~---~~ 304 (892)
....+.. ....... +......++.+|++|++..-.. .....+...+... ..
T Consensus 82 ------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0011111 1111111 2222234567999999943211 1222333333221 12
Q ss_pred CcEEEEEcCchhHH-h-hcc---CCceEeCCCCCHHHHHHHHHHHh
Q 042509 305 GSKILVTTRKETVS-R-MME---STNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 305 gs~iivTtr~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
...||.||...... . ... -...+.+...+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 24566677654321 1 111 13467888889999999887765
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.17 E-value=0.00018 Score=72.66 Aligned_cols=79 Identities=27% Similarity=0.233 Sum_probs=58.5
Q ss_pred cCcCCcceEEcCCCCCCcc---cccccCCCCCCEEeccCcCCccccchhhhccc--cCCeeccccccccc-cc-------
Q 042509 569 ENFMYLRFLKLSKAEIVEL---PETCCELFNLQTLEMEDCCNLKRLPQEIGKLV--NLRYLIYNDSYLHY-LP------- 635 (892)
Q Consensus 569 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~~~~~~l~~-lp------- 635 (892)
.++++|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|.+.+|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5688999999999998854 4567789999999999988 5555 3455555 89999777776653 33
Q ss_pred ccccCCcCCCcCCc
Q 042509 636 RGIERLTCLRTLSE 649 (892)
Q Consensus 636 ~~i~~L~~L~~L~l 649 (892)
.-+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 12567788888874
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.16 E-value=0.0021 Score=68.07 Aligned_cols=152 Identities=12% Similarity=0.143 Sum_probs=85.2
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIE 249 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 249 (892)
.++|++..++.+...+.... -+.++|.+|+|||+||+.+.+ .....| ..+.++......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHE----
T ss_pred ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCC----
Confidence 58899999999888886532 488999999999999999987 333222 2334433333333221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcC--CeEEEEEecCCCCCcCChhhhhhhcCCC-----------CCCcEEEEEcCchh
Q 042509 250 GLEGETSNLGSLQSYLLRIYEAIAK--KKFLLVLDDVWNDDRTKWEPLNHCLMNG-----------QCGSKILVTTRKET 316 (892)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDd~w~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~ 316 (892)
........ .... ...+ ...++++|++..........+...+..+ .....||.|+....
T Consensus 91 ~~~~~~~~-~~~~--------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHK-GNFE--------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTT-TEEE--------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCC-CceE--------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 11100000 0000 0000 0248999999655444444444433321 22445555665322
Q ss_pred ------HH-hhccCCc-eEeCCCCCHHHHHHHHHHHhhC
Q 042509 317 ------VS-RMMESTN-VMFIEELSESECWRLFQQLAFF 347 (892)
Q Consensus 317 ------v~-~~~~~~~-~~~l~~L~~~~~~~lf~~~~~~ 347 (892)
+. ....... .+.+.+.+.++-.+++.+.+..
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 11 1112223 5889999999999999887643
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.13 E-value=0.0042 Score=68.32 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=95.2
Q ss_pred CceecchhhHHHHHHHHhc---CCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLS---ESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS 242 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 242 (892)
.+++|.+..++++.+.+.. +.. -.....+-|.|+|++|+|||+||+.++. +....| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH--
Confidence 4689999887777665432 100 0001123478999999999999999998 333222 33443321110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcC--------------ChhhhhhhcC--CCCCCc
Q 042509 243 VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRT--------------KWEPLNHCLM--NGQCGS 306 (892)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~--------------~~~~l~~~l~--~~~~gs 306 (892)
.. ..........+.....+.+.+|+||++..-... ....+...+. ....+.
T Consensus 89 --------~~-----g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------FV-----GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------CT-----THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------Hh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 001112222333444567899999999432110 1122322222 122355
Q ss_pred EEEEEcCchhHHh-h-cc--C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 307 KILVTTRKETVSR-M-ME--S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 307 ~iivTtr~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
.||.||...+... . .. . ...+.+...+.++..+++..++..... ....+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 6777776654321 1 11 1 337888888888888888776633211 11112 234778888876
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00038 Score=72.67 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhh-cccceeEEEEeCCCCCHHHHHHHHHHhccC
Q 042509 175 DDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVR-NHFKIRMWVCVSDPFDEFSVAKSIIEGLEG 253 (892)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 253 (892)
....+.+.+++..... .....+.|+|.+|+|||+||+.+++. .. ..-..+++++++ +++..+......
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~------~l~~~l~~~~~~ 202 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP------SFAIDVKNAISN 202 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH------HHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH------HHHHHHHHHhcc
Confidence 3344455566654321 12357889999999999999999984 33 332345566543 344444333211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhh--hhh-hcCCC-CCCcEEEEEcCc
Q 042509 254 ETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEP--LNH-CLMNG-QCGSKILVTTRK 314 (892)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 314 (892)
.. ... +.+.+.+. -+|||||+.......|.. +.. .+... ..+..+|+||..
T Consensus 203 ~~-----~~~----~~~~~~~~-~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 203 GS-----VKE----EIDAVKNV-PVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp --------CC----TTHHHHTS-SEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ch-----HHH----HHHHhcCC-CEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 10 111 11122222 388999996443334422 222 22211 123458888864
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=0.011 Score=63.90 Aligned_cols=77 Identities=5% Similarity=0.081 Sum_probs=49.0
Q ss_pred cccceEEEEEeCCCCCccc-cccCCCcceEEEecCCccccCh-hhcCcCCcceEEcCCCCCCcccccccCCCCCCEEecc
Q 042509 526 MEKLRHFMLVLGKSVAFPV-SIFKARKLRSLLIVGPICEIPK-EIENFMYLRFLKLSKAEIVELPETCCELFNLQTLEME 603 (892)
Q Consensus 526 ~~~lr~L~l~~~~~~~~p~-~~~~~~~Lr~L~l~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 603 (892)
..+++.+.+.. .++.++. .|.+|.+|+++.+..++..+.. .|.++ .|..+.+..+ ++.++...-...+|+.+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECC
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCC
Confidence 45677777753 3455543 4778888999988877777654 35555 5777766543 55555443233478888886
Q ss_pred Cc
Q 042509 604 DC 605 (892)
Q Consensus 604 ~~ 605 (892)
.+
T Consensus 122 ~~ 123 (379)
T 4h09_A 122 GA 123 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0018 Score=70.09 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=93.9
Q ss_pred CceecchhhHHHHHHHHhc----CCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLS----ESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
+++.|-++.+++|.+.+.- +.- -+....+-|.++|++|.|||.||+++++ .....| +.+..+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~----- 250 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQ----- 250 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG-----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhh-----
Confidence 4689999999888776432 110 0112356789999999999999999998 333332 2333322
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCC-------CcC---C----hhhhhhhcCC--CCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWND-------DRT---K----WEPLNHCLMN--GQC 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~-------~~~---~----~~~l~~~l~~--~~~ 304 (892)
+... ....-+.....+.. .-...+.+|++|+++.- ... . ...+...+.. ...
T Consensus 251 ---------l~~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 251 ---------LVQM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ---------GCSS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ---------hhhc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1100 01111122222222 22356899999998420 000 0 1123333332 223
Q ss_pred CcEEEEEcCchhHH-hhc---c-CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 305 GSKILVTTRKETVS-RMM---E-STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 305 gs~iivTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
+..||.||...+.. ..+ + -...+.+..-+.++..++|+.+.-.... ...-++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 44566677654322 111 1 1347888888888888888766532211 111223 4577777774
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.0012 Score=74.68 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=78.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
.+++|-+...+.+.+.+.-..-.......++.++|++|+||||||+.+.. .....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccchhhhhhhHHH
Confidence 35788887777775544311100011356899999999999999999988 333222 2233333222222211111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcC----ChhhhhhhcCCCC---------------CCcEEE
Q 042509 249 EGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRT----KWEPLNHCLMNGQ---------------CGSKIL 309 (892)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~----~~~~l~~~l~~~~---------------~gs~ii 309 (892)
..++. ........+.. .....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11100 00111111111 2223348889999653322 2233444442211 234567
Q ss_pred EEcCchhH-H-hhccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 310 VTTRKETV-S-RMMESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 310 vTtr~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
.||..... . ........+.+.+++.++-.+++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 67664321 1 111223478899999999888887654
No 235
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0067 Score=64.76 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=93.7
Q ss_pred CceecchhhHHHHHHHHhcC---Cc----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSE---SS----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
+++.|-++.+++|.+.+.-+ .+ -+....+-|.++|++|.|||.||+++++ .....| +.+..+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHH-----
Confidence 46889998888887765421 11 0112346789999999999999999998 343333 2233221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCCCCC------cC--C------hhhhhhhcC--CCCC
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVWNDD------RT--K------WEPLNHCLM--NGQC 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w~~~------~~--~------~~~l~~~l~--~~~~ 304 (892)
+... ...+.+.....+.. .-+..+.+|++|+++.-- .. . ...+...+. ....
T Consensus 252 ---------l~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 252 ---------LIQK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------GCCS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------hhhc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1000 01111222222222 224668999999985310 00 0 111222222 2233
Q ss_pred CcEEEEEcCchhHH-hhc-c--C-CceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCc
Q 042509 305 GSKILVTTRKETVS-RMM-E--S-TNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGL 371 (892)
Q Consensus 305 gs~iivTtr~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 371 (892)
+..||.||...+.. ..+ . . ...+.+..-+.++..++|+.+.-.. .....-++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCC
Confidence 45666677554322 221 1 1 3467787778888888887765322 21122233 3466777664
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.88 E-value=0.0012 Score=78.54 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=73.0
Q ss_pred CceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAK 245 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 245 (892)
..++|.+..++.+...+..... +.......+.++|++|+|||++|+.+.+ ... ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchh----
Confidence 4588999999888877653210 0112345799999999999999999988 332 234445554422110
Q ss_pred HHHHhccCCCCCCCCHH-HHHHHHHHHh-cCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEc
Q 042509 246 SIIEGLEGETSNLGSLQ-SYLLRIYEAI-AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTT 312 (892)
Q Consensus 246 ~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 312 (892)
....+.+.... -.. .....+.+.+ +...-+|+||++.....+....+...+..+. ....||.||
T Consensus 529 -~~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 529 -TVSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp -CCSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred -hHhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 00111111111 111 0011122222 2446799999997655555556665554321 234577777
Q ss_pred Cc
Q 042509 313 RK 314 (892)
Q Consensus 313 r~ 314 (892)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.00061 Score=69.86 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=46.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEe--CCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCV--SDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
.+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~------~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------Y------NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------C------BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------h------hcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1123567776 322110 0 1455666666777776
Q ss_pred CCeEEEEEecCC
Q 042509 274 KKKFLLVLDDVW 285 (892)
Q Consensus 274 ~kr~LlVlDd~w 285 (892)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.79 E-value=0.0024 Score=76.95 Aligned_cols=135 Identities=14% Similarity=0.251 Sum_probs=73.1
Q ss_pred ceecchhhHHHHHHHHhcCCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 170 RVCGRDDEKNKLIRKLLSESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
.++|.+..++.+...+..... +.......+.|+|++|+|||++|+.+.+. ....-...+.++++......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999999998887754321 01123468899999999999999999883 32111234445554432210
Q ss_pred HHHhccCCCCC---CCCHHHHHHHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCC-----------CCcEEEEEc
Q 042509 247 IIEGLEGETSN---LGSLQSYLLRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQ-----------CGSKILVTT 312 (892)
Q Consensus 247 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 312 (892)
....+.+.... ......+...++. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 01111111100 0001112222222 334689999997655556666666665431 244577887
Q ss_pred Cc
Q 042509 313 RK 314 (892)
Q Consensus 313 r~ 314 (892)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 239
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.74 E-value=0.017 Score=61.34 Aligned_cols=157 Identities=9% Similarity=-0.088 Sum_probs=100.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAK 274 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 274 (892)
.++..++|..|.||++.++.+.+... ...|+....+.+.... +..++...+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 46899999999999999988877321 2234322112222222 33333333322 2346
Q ss_pred CeEEEEEecCCC-CCcCChhhhhhhcCCCCCCcEEEEEcCc-------hhHHhh-ccCCceEeCCCCCHHHHHHHHHHHh
Q 042509 275 KKFLLVLDDVWN-DDRTKWEPLNHCLMNGQCGSKILVTTRK-------ETVSRM-MESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 275 kr~LlVlDd~w~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
++-++|+|+++. -....++.+...+....+++.+|++|.. ..+... ......++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677899999965 4556777888888776667777766532 223333 3345689999999999998888776
Q ss_pred hCCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 042509 346 FFGRSPSECENLEEIGRKIVHKCKGLPLAAKTI 378 (892)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 378 (892)
...+.. --.+.+..|++.++|.+..+...
T Consensus 156 ~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 433221 12456778999999998877653
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.63 E-value=0.0068 Score=59.71 Aligned_cols=84 Identities=20% Similarity=0.086 Sum_probs=51.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccC-----------CC-CCCCCHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEG-----------ET-SNLGSLQS 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~ 263 (892)
..++.|+|.+|+|||||+..+.. . .-..++|++....++..++.. +.+.... .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999987 1 124678888776556655443 3333221 11 11122233
Q ss_pred HHHHHHHHhcCCeEEEEEecCC
Q 042509 264 YLLRIYEAIAKKKFLLVLDDVW 285 (892)
Q Consensus 264 ~~~~l~~~l~~kr~LlVlDd~w 285 (892)
....++..+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444444444457799999984
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.57 E-value=0.0092 Score=69.67 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=95.8
Q ss_pred CceecchhhHHHHHHHHhc----CCc---ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLS----ESS---EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
+++.|.++.+++|.+++.- +.- -+....+-|.++|++|.|||+||+++++. ...+| +.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 4588999888888776532 110 01124567899999999999999999994 33332 334322
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCeEEEEEecCCCCC------cCCh-----hhhhhhcCC--CCCCcEE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKKFLLVLDDVWNDD------RTKW-----EPLNHCLMN--GQCGSKI 308 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd~w~~~------~~~~-----~~l~~~l~~--~~~gs~i 308 (892)
++.... .......+...+....+..+.+|++|+++.-- .... .++...+.. ...+..|
T Consensus 273 ----~l~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 ----EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ----HHHSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ----Hhhccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111111 01111222223333345678999999985311 0111 112222221 1223445
Q ss_pred EEEcCch-hHHhhcc----CCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 309 LVTTRKE-TVSRMME----STNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 309 ivTtr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
|.||... .+-..+. -...+++..-+.++..++|..+..... ....-++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhcCCCC
Confidence 5566543 2222221 134788888889998999887642221 1112233 45777887764
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.54 E-value=0.0055 Score=63.39 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999998
No 243
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.45 E-value=0.031 Score=60.21 Aligned_cols=274 Identities=9% Similarity=0.021 Sum_probs=136.6
Q ss_pred cccCCCcceEEEecCCccccCh-hhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcCCccccchhhhccccCC
Q 042509 545 SIFKARKLRSLLIVGPICEIPK-EIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCCNLKRLPQEIGKLVNLR 622 (892)
Q Consensus 545 ~~~~~~~Lr~L~l~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 622 (892)
.+....+|+++.+..++..+++ .|.+|.+|+.+.|..+ ++.++.. |.++ +|+.+.+..+ +..++...-...+|+
T Consensus 41 ~~~~~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCS
T ss_pred ccccccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcc
Confidence 4556778999999888888865 4788999999999754 6666544 5555 6777777542 444443322234677
Q ss_pred eecccccccccccccccCCcCCCcCCceEeccCCCccCCCCCCcccccccccCCC----------------ceEEe--cc
Q 042509 623 YLIYNDSYLHYLPRGIERLTCLRTLSEFVVSRSGGKYGSKASNLEGLRHLNHLRG----------------FLAIV--GL 684 (892)
Q Consensus 623 ~L~~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~~L~~----------------~l~i~--~l 684 (892)
.+.+..+ +..+......-.+|..+.+..+ ... .....+..+..+.....-.. ..... .+
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~-i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTT-IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT-CCE-ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccceeeeeeccce-eec-cccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 7744322 2222222111112222211100 000 00000111111111100000 00000 00
Q ss_pred CCCC------ChhhhhhhcccCCCCCCeEEEEeeCCCchhhHhhhhhhhccHHHHhhhCCCCCCCCeEEEeeecCCCCCC
Q 042509 685 GNVK------DVDEAKNAELEKKKNLFRLELWFNNKEEEEEEESMEENQANQGAISEALRPPPNLESLEIWEYKGKAVFE 758 (892)
Q Consensus 685 ~~~~------~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p 758 (892)
.... .........+..+.+|+.+.+..+- . ..-...+..+.+|+.+.+..+ ++..-.
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~---------------~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV-T---------------TLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC-C---------------EECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ccccccccccceeEEeecccccccccceeeeccce-e---------------EEccccccCCccceEEEcCCC-ccEeCc
Confidence 0000 0000011233445566666553221 0 011234456778888888654 333123
Q ss_pred chhhhccCCcEEEEeccCCCCcCC-CCCCCCCCCeEEEcceEEEEeCCcccCCCCCCCCCCCCCCCccceeecccccccc
Q 042509 759 NWIVSLNKLKKLFLINCYNCEIMP-PLGKLPFLESLKIRNMNVKKVGDEFLGIKSNHSSGPAIAFPKLKHLKFMKLSEWE 837 (892)
Q Consensus 759 ~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~n~~~~~~~~f~~L~~L~l~~l~~l~ 837 (892)
..+..+.+|+.+.+..+. ..... .+..+++|+.+.+.++.++.++...|. .+.+|+++.+-+ +++
T Consensus 257 ~aF~~~~~l~~i~l~~~i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~-----------~c~~L~~i~lp~--~l~ 322 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAKV-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM-----------DCVKLSSVTLPT--ALK 322 (379)
T ss_dssp TTTTTCTTCCEEEECCCC-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTT-----------TCTTCCEEECCT--TCC
T ss_pred cccceeehhccccccccc-eeccccccccccccccccccccccceehhhhhc-----------CCCCCCEEEcCc--ccc
Confidence 445578889999986542 22222 378899999999988778888765442 445677776632 333
Q ss_pred ccccccccCcccccCcCCccceeeec
Q 042509 838 EWDFGITRSGKEEITIMPQLNSLEII 863 (892)
Q Consensus 838 ~~~~~~~~~~~~~~~~lp~L~~L~i~ 863 (892)
.+. ...+..+++|+.+.|-
T Consensus 323 ~I~-------~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 323 TIQ-------VYAFKNCKALSTISYP 341 (379)
T ss_dssp EEC-------TTTTTTCTTCCCCCCC
T ss_pred EEH-------HHHhhCCCCCCEEEEC
Confidence 332 2234456677777663
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.40 E-value=0.01 Score=63.95 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=34.7
Q ss_pred ceecchhhHHHHHHHHhc----CCc--------------------ccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 170 RVCGRDDEKNKLIRKLLS----ESS--------------------EEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~----~~~--------------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.+..++.+...+.. ... ........+.++|++|+|||++|+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 578988888888776621 000 0001234688999999999999999988
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0017 Score=63.49 Aligned_cols=113 Identities=14% Similarity=-0.003 Sum_probs=62.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSN--LGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 273 (892)
..++.|+|..|+||||++..+.. +...+-..++.+.... +.+ -...+++.++..... .....++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 47899999999999999988877 3433333344443332 222 222344444322111 1233445555555444
Q ss_pred CCeE-EEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchh
Q 042509 274 KKKF-LLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKET 316 (892)
Q Consensus 274 ~kr~-LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 316 (892)
+.++ +||+|.+..-+.+..+.+. .+.+ .|..||+|.+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 4444 9999999532222333332 2222 2678999998544
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.20 E-value=0.033 Score=56.70 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=79.4
Q ss_pred CceecchhhHHHHHHHHhcCCcc--------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE--------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
+++.|-++.++.+.+.+..+-.. -....+ +.++|++|+||||||+.++.. ... ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 46888888888887655321100 001122 999999999999999999883 221 2344433221100
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCCCc-------CC----hhhhhhhcCCC--CCCc
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWNDDR-------TK----WEPLNHCLMNG--QCGS 306 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~~~-------~~----~~~l~~~l~~~--~~gs 306 (892)
...........+.+.. ...+.++++|++..... .. ...+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000111112222222 34578999999953100 00 11122223222 1233
Q ss_pred EEEEEcCchhHHhh-c----cCCceEeCCCCCHHHHHHHHHHHh
Q 042509 307 KILVTTRKETVSRM-M----ESTNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 307 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
-++.+|...++... + .-...+.+...+.++..++++...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45556655443221 1 124577888888888899998765
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.18 E-value=0.011 Score=62.25 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=55.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 269 (892)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999873 32222357888877766654 333333221 12345666666666
Q ss_pred HHhc-CCeEEEEEecCC
Q 042509 270 EAIA-KKKFLLVLDDVW 285 (892)
Q Consensus 270 ~~l~-~kr~LlVlDd~w 285 (892)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5553 455689999983
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.10 E-value=0.048 Score=60.30 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=90.8
Q ss_pred CCceecchhhHHHHHHHHh---cCCc--c-cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 168 EDRVCGRDDEKNKLIRKLL---SESS--E-EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~---~~~~--~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
-++++|.+..++++.+... .... + ...-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH--
Confidence 3568999987777665543 2110 0 0001123899999999999999999883 321 233444332100
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC----CeEEEEEecCCCCCc----------CCh----hhhhhhcCCC-
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAK----KKFLLVLDDVWNDDR----------TKW----EPLNHCLMNG- 302 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDd~w~~~~----------~~~----~~l~~~l~~~- 302 (892)
.........++..++. .+.++++|++..-.. ..+ ..+...+..+
T Consensus 103 -----------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 -----------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp -----------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred -----------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0011122233333332 347999999942110 111 2233333322
Q ss_pred -CCCcEEEEEcCchhHHh-h-c---cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 303 -QCGSKILVTTRKETVSR-M-M---ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 303 -~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
..+..|+.||...++.. . . .-...+.+...+.++..+++..++-.. ......+ ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 22345555666554422 1 1 123478888889998889887665221 1111111 234677777755
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.92 E-value=0.011 Score=58.85 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=61.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-------------------
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS------------------- 256 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 256 (892)
..+++|+|.+|+|||||++.++.. ....-..++|+.... ...++...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 368999999999999999999863 221122466665433 3444443332 2221100
Q ss_pred ----CCCCHHHHHHHHHHHhc---CCeEEEEEecCCCC---CcCChhhhhhhcCC--CCCCcEEEEEcCch
Q 042509 257 ----NLGSLQSYLLRIYEAIA---KKKFLLVLDDVWND---DRTKWEPLNHCLMN--GQCGSKILVTTRKE 315 (892)
Q Consensus 257 ----~~~~~~~~~~~l~~~l~---~kr~LlVlDd~w~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 315 (892)
...+.++....+...+. .+..+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11245555555555442 23349999998421 22223333333322 12467788888754
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.90 E-value=0.021 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998873
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.84 E-value=0.016 Score=68.91 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=84.4
Q ss_pred CceecchhhHHHHHHHHhcCC---c----ccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSES---S----EEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
++++|.+..++++.+++...- . -.-.....|.|+|.+|+||||||+.+... ....| +.+..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 468999999999988875310 0 00123457899999999999999999883 33222 333321
Q ss_pred HHHHHHHHhccCCCCCCCCHHH-HHHHHHHHhcCCeEEEEEecCCCCCc------C-----ChhhhhhhcCC--CCCCcE
Q 042509 242 SVAKSIIEGLEGETSNLGSLQS-YLLRIYEAIAKKKFLLVLDDVWNDDR------T-----KWEPLNHCLMN--GQCGSK 307 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDd~w~~~~------~-----~~~~l~~~l~~--~~~gs~ 307 (892)
++... ....... ....+.......+.++++|++..... . ....+...+.. ...+..
T Consensus 273 ----~l~~~------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 273 ----EIMSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----HHSSS------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----Hhhhh------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 11100 0011111 22223333345678999999842110 0 01122222221 123445
Q ss_pred EEEEcCchh-HHhhcc---C-CceEeCCCCCHHHHHHHHHHHh
Q 042509 308 ILVTTRKET-VSRMME---S-TNVMFIEELSESECWRLFQQLA 345 (892)
Q Consensus 308 iivTtr~~~-v~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~ 345 (892)
||.||.... +...+. . ...+.+...+.++..+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666665532 221111 1 2457788888999999988765
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.82 E-value=0.031 Score=59.14 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhccCCC------------CCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGLEGET------------SNL 258 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 258 (892)
...++.|+|.+|+||||||.+++....... .-..++|++....++..++.. +++.++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999998876321111 224688999888777766544 334433211 111
Q ss_pred CCHHHHHHHHHHHhc---CCeEEEEEecC
Q 042509 259 GSLQSYLLRIYEAIA---KKKFLLVLDDV 284 (892)
Q Consensus 259 ~~~~~~~~~l~~~l~---~kr~LlVlDd~ 284 (892)
....++...+.+.++ .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 122233334444443 45668888887
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.75 E-value=0.024 Score=57.78 Aligned_cols=81 Identities=9% Similarity=0.078 Sum_probs=53.3
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcc--cceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHH-HHHHH
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNH--FKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSY-LLRIY 269 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 269 (892)
++-|.|.+|+||||||.+++.. .... =..++|++....++... ++.++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888773 3222 24688999888777642 555554321 12345555 33332
Q ss_pred HH--h-cCCeEEEEEecCC
Q 042509 270 EA--I-AKKKFLLVLDDVW 285 (892)
Q Consensus 270 ~~--l-~~kr~LlVlDd~w 285 (892)
.. + +++.-+||+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4567899999983
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.73 E-value=0.027 Score=59.71 Aligned_cols=83 Identities=18% Similarity=0.082 Sum_probs=54.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIYE 270 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 270 (892)
..++.|+|.+|+||||||.++... ....-..++|++....++... ++.++... ....+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458889999999999999888773 222224689999887666542 33333221 122456666666666
Q ss_pred Hhc-CCeEEEEEecCC
Q 042509 271 AIA-KKKFLLVLDDVW 285 (892)
Q Consensus 271 ~l~-~kr~LlVlDd~w 285 (892)
..+ ++.-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 345589999983
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.71 E-value=0.0092 Score=56.49 Aligned_cols=117 Identities=19% Similarity=0.040 Sum_probs=62.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC---CCCHHHHHHHHHHhc---cCCCC-CCC-------CHH
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD---PFDEFSVAKSIIEGL---EGETS-NLG-------SLQ 262 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l---~~~~~-~~~-------~~~ 262 (892)
..|.|++..|.||||.|--..- +.-++=..+.++..-. ......++..+.-.+ +.... ... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4677777788999999966665 3333323455554333 223333443331000 00000 000 112
Q ss_pred HHHHHHHHHhcCCe-EEEEEecCCC---CCcCChhhhhhhcCCCCCCcEEEEEcCch
Q 042509 263 SYLLRIYEAIAKKK-FLLVLDDVWN---DDRTKWEPLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 263 ~~~~~l~~~l~~kr-~LlVlDd~w~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 315 (892)
......++.+.+.+ =|||||++-. -..-..+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 23334555565444 4999999821 12344556767676666677899999975
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.016 Score=58.03 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhccCCC---------CCCCCHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGLEGET---------SNLGSLQ 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 262 (892)
..++.|+|.+|+|||||+..+........ .-..++|+.....+...++. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45899999999999999998876211111 12468888877655554443 3333333211 0112222
Q ss_pred H---HHHHHHHHhc-CCeEEEEEecCC
Q 042509 263 S---YLLRIYEAIA-KKKFLLVLDDVW 285 (892)
Q Consensus 263 ~---~~~~l~~~l~-~kr~LlVlDd~w 285 (892)
+ ....+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2233444443 467799999984
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.60 E-value=0.011 Score=57.15 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 174 RDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
|++.++.+.+.+..... ....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56677788887775421 2457999999999999999999876
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.59 E-value=0.041 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.57 E-value=0.018 Score=60.51 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=54.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhc---------cc-----ceeEEEEeCCCCCHHHHHHHHHHhccCCC-----
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRN---------HF-----KIRMWVCVSDPFDEFSVAKSIIEGLEGET----- 255 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 255 (892)
...++.|+|.+|+||||||.+++....... .. ..++|++....++..++.+- ++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 357999999999999999988876321111 11 46889998887777766543 34443221
Q ss_pred ----CCCCCHH---HHHHHHHHHhc--CCeEEEEEecC
Q 042509 256 ----SNLGSLQ---SYLLRIYEAIA--KKKFLLVLDDV 284 (892)
Q Consensus 256 ----~~~~~~~---~~~~~l~~~l~--~kr~LlVlDd~ 284 (892)
....+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23444555554 34568888887
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.57 E-value=0.024 Score=59.55 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhc----ccceeEEEEeCCCCCHHHHHHHHHHhccCCC---------CCCCCHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRN----HFKIRMWVCVSDPFDEFSVAKSIIEGLEGET---------SNLGSLQ 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 262 (892)
..++.|+|.+|+||||||.+++....... .-..++|++....++..++.+ +++.++... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999998876321111 024689999888777766553 344443221 0112222
Q ss_pred ---HHHHHHHHHhc--CCeEEEEEecC
Q 042509 263 ---SYLLRIYEAIA--KKKFLLVLDDV 284 (892)
Q Consensus 263 ---~~~~~l~~~l~--~kr~LlVlDd~ 284 (892)
++...+...++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23344444443 45678888887
No 261
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.45 E-value=0.081 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.32 E-value=0.038 Score=58.36 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=53.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIYE 270 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 270 (892)
..++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++... ....+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999998863 22222468899888766653 233333221 112345555555554
Q ss_pred Hhc-CCeEEEEEecC
Q 042509 271 AIA-KKKFLLVLDDV 284 (892)
Q Consensus 271 ~l~-~kr~LlVlDd~ 284 (892)
..+ .+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 443 44669999998
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.07 E-value=0.043 Score=57.99 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=52.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIYE 270 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 270 (892)
.+++.|.|.+|+||||||.+++.. ....-..++|++....++... ++.++.... +..+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 468999999999999999988873 222223688999887776442 333332211 12244555555544
Q ss_pred Hh-cCCeEEEEEecC
Q 042509 271 AI-AKKKFLLVLDDV 284 (892)
Q Consensus 271 ~l-~~kr~LlVlDd~ 284 (892)
.. +.+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 43 244558999998
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.97 E-value=0.037 Score=57.28 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccc-eeEEEEe
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFK-IRMWVCV 234 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~ 234 (892)
..+++|+|.+|+|||||++.++.. ....-. .++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeC
Confidence 458999999999999999998874 222212 4556654
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.92 E-value=0.044 Score=56.37 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=45.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhc-ccceeEEEEeCC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFKIRMWVCVSD-PFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIA 273 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 273 (892)
..+++++|.+|+||||++..+... ... .=..+..+.... .....+.+....+..+.+.....+...+...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 469999999999999999998863 221 112344554432 1223333444443333222112233344334432 3
Q ss_pred CCeEEEEEecC
Q 042509 274 KKKFLLVLDDV 284 (892)
Q Consensus 274 ~kr~LlVlDd~ 284 (892)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33457888944
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.83 E-value=0.019 Score=55.92 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
-+++|.+.+.... ....+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554321 2467999999999999999999887
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.69 E-value=0.039 Score=57.77 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhc-ccc-eeEEEEeCCCCCHHHHHHHHHHhccC----
Q 042509 180 KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFK-IRMWVCVSDPFDEFSVAKSIIEGLEG---- 253 (892)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~---- 253 (892)
++++.+..-. ....++|+|.+|+|||||++.+.+. +.. +-+ .++++-+++..... .++.+.+..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev---~~~~~~~~~~vV~ 232 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEV---TEMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHH---HHHHTTCSSEEEE
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHH---HHHHHHhCeEEEE
Confidence 4455555432 2457999999999999999998773 222 222 24467777643222 223343321
Q ss_pred CCCCCCCHHH-----HHHHHHHHh--cCCeEEEEEecC
Q 042509 254 ETSNLGSLQS-----YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 254 ~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
...+...... ..-.+.+++ +++..||++||+
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 1111111111 111223333 589999999998
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.68 E-value=0.094 Score=53.69 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=43.6
Q ss_pred cceEEEEEEecCCchHHHHHHHHhCChhhhc-ccceeEEEEeCCCCCHHHHHHHHHHhc------cC-CCCCCCCHHHHH
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYNDPDVRN-HFKIRMWVCVSDPFDEFSVAKSIIEGL------EG-ETSNLGSLQSYL 265 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 265 (892)
....+|+|+|..|+||||||+.+...-...+ ....+..|+....+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3568999999999999999998877321111 122344445544333334444443221 11 013344555555
Q ss_pred HHHHHHhcC
Q 042509 266 LRIYEAIAK 274 (892)
Q Consensus 266 ~~l~~~l~~ 274 (892)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554444
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.59 E-value=0.071 Score=55.21 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=33.1
Q ss_pred eecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 171 VCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++|....+..+...+..... .....+|+|.|..|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555566666655554431 24577999999999999999998866
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.54 E-value=0.021 Score=63.20 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=36.1
Q ss_pred ceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 170 RVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.++|.+..++.+...+.... -|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 48899999999888876543 4889999999999999999883
No 271
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.49 E-value=0.38 Score=63.79 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=75.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCCe
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKKK 276 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 276 (892)
+-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+..........- .-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 458899999999999997776631 122 34567777777776666655544322100000000 00003678
Q ss_pred EEEEEecCCCCCcCC------hhhhhhhcCCCC-----C-------CcEEEEEcCchh------HH-hhccCCceEeCCC
Q 042509 277 FLLVLDDVWNDDRTK------WEPLNHCLMNGQ-----C-------GSKILVTTRKET------VS-RMMESTNVMFIEE 331 (892)
Q Consensus 277 ~LlVlDd~w~~~~~~------~~~l~~~l~~~~-----~-------gs~iivTtr~~~------v~-~~~~~~~~~~l~~ 331 (892)
.++.+||+.-...+. .+.++..+..++ . +..+|-|+.... +. +......++.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 899999974333332 233444433221 1 223444553321 11 1122345788888
Q ss_pred CCHHHHHHHHHHHh
Q 042509 332 LSESECWRLFQQLA 345 (892)
Q Consensus 332 L~~~~~~~lf~~~~ 345 (892)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887654
No 272
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.46 E-value=0.075 Score=55.36 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=37.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEG 250 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 250 (892)
..++.|.|.+|+||||||.+++.....++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999988876422222 567887765 4667777766654
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.44 E-value=0.02 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.37 E-value=0.018 Score=54.21 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.7
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 042509 197 QTISVVGMGGIGKTTLAQMA 216 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v 216 (892)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.37 E-value=0.12 Score=53.97 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=37.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
..++.|.|.+|+||||||..++..... +=..++|++. .-+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 458999999999999999988874222 2235677665 456777777776544
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.34 E-value=0.075 Score=56.18 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhccc----ceeEEEEeCCCCCHHHHHHHHHHhccCCC------------CCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHF----KIRMWVCVSDPFDEFSVAKSIIEGLEGET------------SNL 258 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 258 (892)
...++.|+|.+|+|||||+..++......... ..++|++....+...++ ..+++...... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999988732111111 24588887665544433 33444332210 000
Q ss_pred CCHHHHHHHHHHHhc------CCeEEEEEecCC
Q 042509 259 GSLQSYLLRIYEAIA------KKKFLLVLDDVW 285 (892)
Q Consensus 259 ~~~~~~~~~l~~~l~------~kr~LlVlDd~w 285 (892)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233344444443 467799999983
No 277
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.25 E-value=0.098 Score=56.14 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=50.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhh----hcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC---------CCCCHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDV----RNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS---------NLGSLQ 262 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 262 (892)
..++.|+|.+|+|||||+..++-.... ...-..++|++....+....+. .+++.++.... ...+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 469999999999999999976521111 1123458888877666655443 34554433210 111222
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEecC
Q 042509 263 ---SYLLRIYEAI-AKKKFLLVLDDV 284 (892)
Q Consensus 263 ---~~~~~l~~~l-~~kr~LlVlDd~ 284 (892)
+....+.+.+ ..+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 2222333333 346778889987
No 278
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.25 E-value=0.0066 Score=57.73 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=18.9
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++.|+|..|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966665
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.13 E-value=0.02 Score=54.07 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.07 E-value=0.021 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999976
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.023 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.93 E-value=0.029 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|+|+.|+||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.93 E-value=0.023 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.83 E-value=0.028 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47999999999999999997654
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.82 E-value=0.13 Score=53.11 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=47.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH--HHHHHHHHhccCC---CCCCCCHHHH-HHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF--SVAKSIIEGLEGE---TSNLGSLQSY-LLRI 268 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l 268 (892)
...++.|+|.+|+||||++..++.. ....-..+.++... .+... +-+...++..+.. .....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4689999999999999999998873 33222234455432 23222 1223333333221 1111222222 2345
Q ss_pred HHHhcCCeEEEEEecCC
Q 042509 269 YEAIAKKKFLLVLDDVW 285 (892)
Q Consensus 269 ~~~l~~kr~LlVlDd~w 285 (892)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55455555578889763
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.77 E-value=0.026 Score=53.46 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.72 E-value=0.056 Score=55.44 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443321 223467999999999999999999976
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.67 E-value=0.025 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.66 E-value=0.033 Score=53.32 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.63 E-value=0.027 Score=59.58 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=59.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHH-HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFS-VAKSIIEGLEGETSNLGSLQSYLLRIYEAIAKK 275 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 275 (892)
.+++|+|+.|+|||||.+.+... +.......++ .+.+...... -...++.+.. ...+.......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~~~~v~q~~----~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESKKCLVNQRE----VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCSSSEEEEEE----BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhccccceeeee----eccccCCHHHHHHHHhhhC
Confidence 59999999999999999998772 3222122222 2222111000 0000000000 0011122344778888888
Q ss_pred eEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHH
Q 042509 276 KFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVS 318 (892)
Q Consensus 276 r~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 318 (892)
+=+|++|..- +...++.+.... ..|..||+||.....+
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8899999994 344444444332 2366688888866544
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.62 E-value=0.039 Score=58.99 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=35.6
Q ss_pred ceecchhhHHHHHHHHhcCC---------cccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 170 RVCGRDDEKNKLIRKLLSES---------SEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.+..++.+...+.... .......+.+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 37899998888888773100 00011345689999999999999999988
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.58 E-value=0.037 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.57 E-value=0.099 Score=56.66 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-HHHHHHHHHHh--cc------CCCCCCCCHHH----
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD-EFSVAKSIIEG--LE------GETSNLGSLQS---- 263 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~--l~------~~~~~~~~~~~---- 263 (892)
+.++|+|.+|+|||||++.+...... .+-+..+++-+++..+ ..+++.++... +. ....+..-...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999874222 2224567777766542 33444444332 00 01111111111
Q ss_pred HHHHHHHHh---cCCeEEEEEecC
Q 042509 264 YLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 264 ~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
..-.+.+++ ++++.|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111334443 589999999999
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.57 E-value=0.41 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.++|.+|+||||++.++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.56 E-value=0.22 Score=49.56 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKS 246 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 246 (892)
..++.|.|.+|+||||||.+++.. ....=..++|++... ...++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC--CHHHHHHH
Confidence 458999999999999999887663 222223577777544 34444443
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.54 E-value=0.026 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999977
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.53 E-value=0.055 Score=54.40 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 177 EKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+.+...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444444332 234567999999999999999999976
No 298
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.52 E-value=0.19 Score=54.64 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=60.9
Q ss_pred HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-HHHHHHHHHHhccCC----
Q 042509 180 KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD-EFSVAKSIIEGLEGE---- 254 (892)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~---- 254 (892)
+.++.|..-. +-+-++|.|.+|+|||+|++++.+.. .+.+-+.++++-+++... ..++.+++.+.=...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 3455554432 23568999999999999999988731 233457888988887654 456666665431111
Q ss_pred ---C-------CCCC-----CHHHHHHHHHHHhc---CCeEEEEEecC
Q 042509 255 ---T-------SNLG-----SLQSYLLRIYEAIA---KKKFLLVLDDV 284 (892)
Q Consensus 255 ---~-------~~~~-----~~~~~~~~l~~~l~---~kr~LlVlDd~ 284 (892)
. .+.. ......-.+.++++ ++..|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 0111 11122334556664 68999999998
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.49 E-value=0.034 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 300
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.42 E-value=0.037 Score=57.43 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=26.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVS 235 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 235 (892)
+.+||+|+|-||+||||.+..+..- ....=..+.-|.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 5799999999999999999766552 22221235555554
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.38 E-value=0.042 Score=53.54 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 302
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.37 E-value=0.045 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.36 E-value=0.025 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.35 E-value=0.033 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 305
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.35 E-value=0.052 Score=56.56 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.7
Q ss_pred ecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 172 CGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
|+.+.-.+++++.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4445556666666643221 12356789999999999999999887
No 306
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.30 E-value=0.035 Score=53.72 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.29 E-value=0.041 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.26 E-value=0.031 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999977
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.12 E-value=0.039 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 310
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.10 E-value=0.065 Score=53.95 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=86.5
Q ss_pred CceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHH
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEF 241 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 241 (892)
++++|.+..+.++.+....-... -.-... +.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------
Confidence 46889887766665543211000 000112 899999999999999999883 22 122333221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC----------CcCCh----hhhhhhcCCCC--C
Q 042509 242 SVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND----------DRTKW----EPLNHCLMNGQ--C 304 (892)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~----------~~~~~----~~l~~~l~~~~--~ 304 (892)
. +..... .........+.+.. .....++++|++..- ....+ ..+...+..+. .
T Consensus 84 ~----~~~~~~------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 D----FVEMFV------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp H----HHHSCT------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred H----HHHHHh------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 1 111110 00111122222332 245689999998310 00111 12322333222 2
Q ss_pred CcEEEEEcCchhHHh-hc----cCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 305 GSKILVTTRKETVSR-MM----ESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 305 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
...++.||....+.. .. .-...+.+...+.++..+++...+-.. ......+ ...|++.+.|.-
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 233444555544322 11 123478888889988888887765321 1111112 234677777653
No 311
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.08 E-value=0.045 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.07 E-value=0.035 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999877
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.05 E-value=0.039 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.02 E-value=0.29 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++.|+|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988887
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.01 E-value=0.042 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.99 E-value=0.036 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.98 E-value=0.047 Score=54.86 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999977
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.97 E-value=0.032 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.95 E-value=0.034 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.94 E-value=0.043 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999773
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.94 E-value=0.049 Score=52.72 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.92 E-value=0.051 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.92 E-value=0.048 Score=52.71 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.90 E-value=0.12 Score=45.53 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=29.9
Q ss_pred ccChhhcCcCCcceEEcCCCCCCccccc-ccCCCCCCEEeccCcC
Q 042509 563 EIPKEIENFMYLRFLKLSKAEIVELPET-CCELFNLQTLEMEDCC 606 (892)
Q Consensus 563 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 606 (892)
.+|..+. .+|++|+|++|.|+.+|.. |..+.+|++|+|++|.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4554332 3578888888888877765 5677888888888876
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.89 E-value=0.098 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 326
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.89 E-value=0.057 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.84 E-value=0.041 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999877
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.84 E-value=0.043 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.82 E-value=0.043 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.81 E-value=0.058 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.77 E-value=0.038 Score=52.00 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 332
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.75 E-value=0.052 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.8
Q ss_pred cceEEEEEEecCCchHHHHHHHHhC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 333
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.74 E-value=0.063 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999887
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.73 E-value=0.048 Score=50.48 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++.|+|..|+|||||+.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 335
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.63 E-value=0.042 Score=58.46 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=32.5
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+.++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 358999886666544444322 12388999999999999999987
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.62 E-value=0.053 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 337
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.60 E-value=0.059 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999877
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.58 E-value=0.042 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.55 E-value=0.06 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 340
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.55 E-value=0.063 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.48 E-value=0.055 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 342
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.47 E-value=0.33 Score=50.48 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.45 E-value=0.06 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.42 E-value=0.058 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.42 E-value=0.056 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.39 E-value=0.042 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 347
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.35 E-value=0.35 Score=52.26 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=59.1
Q ss_pred HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC-HHHHHHHHHHhccCC----
Q 042509 180 KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD-EFSVAKSIIEGLEGE---- 254 (892)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~---- 254 (892)
+.++.|..-. +-+-++|.|.+|+|||+|++++.+.. .+.+-+.++++-+.+... ..++.+++.+.=...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 4555554322 24568999999999999999988731 233446678888887543 445666665431111
Q ss_pred ---------CCCCCCHH-----HHHHHHHHHh---cCCeEEEEEecC
Q 042509 255 ---------TSNLGSLQ-----SYLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 255 ---------~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
..+..... ...-.+.+++ +++..|+++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111111 1122234444 578999999998
No 348
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.34 E-value=0.17 Score=49.78 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=30.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhh---hc-ccceeEEEEeCCCCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDV---RN-HFKIRMWVCVSDPFD 239 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~ 239 (892)
...+++|+|..|+|||||++.++..... .. .-...+|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 3579999999999999999998752111 11 123577877554333
No 349
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.33 E-value=0.071 Score=54.49 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=87.4
Q ss_pred CCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH
Q 042509 168 EDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE 240 (892)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 240 (892)
-++++|.+..++++.+....-... -.-... +.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH-----
Confidence 346899988776665544321000 000112 899999999999999999883 32 123333321
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-cCCeEEEEEecCCCC--C--------cCCh----hhhhhhcCCCCC-
Q 042509 241 FSVAKSIIEGLEGETSNLGSLQSYLLRIYEAI-AKKKFLLVLDDVWND--D--------RTKW----EPLNHCLMNGQC- 304 (892)
Q Consensus 241 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDd~w~~--~--------~~~~----~~l~~~l~~~~~- 304 (892)
. +..... .........+.+.. ...+.++|+|++..- . ...+ ..+...+..+..
T Consensus 108 -~----~~~~~~------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -D----FVEMFV------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -H----HHHSTT------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -H----HHHHHh------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1 111110 00111122222222 345689999998310 0 0111 122222332221
Q ss_pred -CcEEEEEcCchhHHh-h----ccCCceEeCCCCCHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHhcCCch
Q 042509 305 -GSKILVTTRKETVSR-M----MESTNVMFIEELSESECWRLFQQLAFFGRSPSECENLEEIGRKIVHKCKGLP 372 (892)
Q Consensus 305 -gs~iivTtr~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 372 (892)
...++.||....+.. . ..-...+.+...+.++..+++..++-.. ....... ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 233444555443211 1 1224578898889998888888765321 1111111 234677777754
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.30 E-value=0.06 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999886
No 351
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.29 E-value=0.19 Score=55.46 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999988873
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.28 E-value=0.063 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.24 E-value=0.07 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|+|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998876
No 354
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.20 E-value=0.35 Score=49.60 Aligned_cols=87 Identities=16% Similarity=0.036 Sum_probs=46.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCC-CCHHHHHHHHHHhccCC---CCCCCCHHHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDP-FDEFSVAKSIIEGLEGE---TSNLGSLQSYLLRIYEA 271 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 271 (892)
..+++++|.+|+||||++..+... ....=..+.++..... ....+.++...+..+.. .....+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999988873 3222223555554322 12222333333333221 11123344443333344
Q ss_pred hc-CCeEEEEEecC
Q 042509 272 IA-KKKFLLVLDDV 284 (892)
Q Consensus 272 l~-~kr~LlVlDd~ 284 (892)
++ +.-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33337888876
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.19 E-value=0.085 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.16 E-value=0.059 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.14 E-value=0.06 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 358
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.13 E-value=0.15 Score=48.70 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|..|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.11 E-value=0.12 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999998874
No 360
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.10 E-value=0.37 Score=52.56 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=29.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFD 239 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 239 (892)
...+++|+|..|+|||||++.+.. ..+. ....+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 467999999999999999999987 3322 23445554344443
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.06 E-value=0.051 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999977
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.01 E-value=0.063 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.00 E-value=0.084 Score=50.13 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=18.1
Q ss_pred hcCcCCcceEEcCCCCCC-----cccccccCCCCCCEEeccCcC
Q 042509 568 IENFMYLRFLKLSKAEIV-----ELPETCCELFNLQTLEMEDCC 606 (892)
Q Consensus 568 i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~ 606 (892)
+..-.+|+.|+|++|.|. .+.+.+..-..|++|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 334444555555555544 223333344445555555554
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.00 E-value=0.07 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.94 E-value=0.083 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.93 E-value=0.056 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.93 E-value=0.056 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.87 E-value=0.048 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=16.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 369
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.87 E-value=0.5 Score=52.81 Aligned_cols=53 Identities=13% Similarity=-0.037 Sum_probs=36.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhc
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGL 251 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 251 (892)
..++.|.|.+|+||||||.+++.+...+ +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4689999999999999998888742221 123577776644 5667777665443
No 370
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.87 E-value=0.75 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.1
Q ss_pred cceEEEEEEecCCchHHHHHHHHhC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...++|+|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998886
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.83 E-value=0.1 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.83 E-value=0.068 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 373
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.83 E-value=0.063 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999977
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.82 E-value=0.054 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.80 E-value=0.38 Score=49.87 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998887
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.80 E-value=0.067 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.79 E-value=0.071 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.70 E-value=0.17 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999877
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.68 E-value=0.31 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988886
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.67 E-value=0.095 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 381
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.64 E-value=0.37 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999887
No 382
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.62 E-value=0.38 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++|.++|.+|+||||++.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988886
No 383
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.56 E-value=0.33 Score=48.40 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=33.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
..++.|.|.+|+|||+||.+++.+. ....-..++|++.. .+..++.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHHH
Confidence 4689999999999999998876531 22223356666654 35566655543
No 384
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.54 E-value=0.071 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.461 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988873
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.50 E-value=0.12 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.4
Q ss_pred cchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 173 GRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+.++..+.+.+.+.. ....+|+|+|.+|+|||||+.++...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555554432 24689999999999999999998873
No 386
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.49 E-value=0.42 Score=52.55 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=34.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHH
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSII 248 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 248 (892)
..++.|.|.+|+||||||..++...... .=..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 4689999999999999999988743221 112577776543 4566666554
No 387
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.49 E-value=0.092 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.48 E-value=0.09 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999977
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.45 E-value=0.23 Score=47.51 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=24.4
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEE
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVC 233 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 233 (892)
.|+|=|..|+||||.++.+.+ ..+..-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 377889999999999999988 4444433344443
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.35 E-value=0.1 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.29 E-value=0.084 Score=51.55 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 392
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.29 E-value=0.098 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 393
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.26 E-value=0.57 Score=51.31 Aligned_cols=52 Identities=8% Similarity=-0.011 Sum_probs=36.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEG 250 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 250 (892)
..++.|.|.+|+||||||.+++...... .=..++|++.. -+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4689999999999999999888742221 12357777664 4566777766543
No 394
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.23 E-value=0.095 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.10 E-value=0.11 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.08 E-value=0.091 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.06 E-value=0.091 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.06 E-value=0.11 Score=56.37 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=35.7
Q ss_pred CceecchhhHHHHHHHHhcC--------CcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 169 DRVCGRDDEKNKLIRKLLSE--------SSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++|-++.++.+...+... ........+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45889998888887666321 000001235688999999999999999988
No 399
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.05 E-value=0.5 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|+.|+|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998763
No 400
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.05 E-value=0.1 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 401
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.03 E-value=0.15 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.00 E-value=0.094 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 403
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.99 E-value=0.2 Score=53.73 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccc----eeEEEEeCCCC-CHHHHHHHHHHh--ccC-----CCCCCCCHHH-
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFK----IRMWVCVSDPF-DEFSVAKSIIEG--LEG-----ETSNLGSLQS- 263 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~- 263 (892)
+-++|.|..|+|||+|+.++.+.. ..+-+ .++++-+++.. .+.++.+++.+. +.. ...+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 347899999999999999998843 22223 57777777643 344555554432 110 0111111111
Q ss_pred ----HHHHHHHHh---cCCeEEEEEecC
Q 042509 264 ----YLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 264 ----~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
..-.+.+++ +++..|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122345555 378999999998
No 404
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.98 E-value=0.13 Score=48.89 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+..+..++..-. ....+.|+|++|.||||+|..+++
T Consensus 45 ~~~l~~~~~~iP-----kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTP-----KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTCT-----TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-----cccEEEEECCCCCCHHHHHHHHHH
Confidence 445555554321 234689999999999999988887
No 405
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.96 E-value=0.35 Score=52.56 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=50.3
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhhhcccc-eeEEEEeCCCCC-HHHHHHHHHHhccC-------CCCCCCCHHH--
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDVRNHFK-IRMWVCVSDPFD-EFSVAKSIIEGLEG-------ETSNLGSLQS-- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~-- 263 (892)
.+-++|.|.+|+|||+|| .++.+.. .-+ .++++-+++... +.++.+.+...=.. ...+......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999995 5777742 245 357787877543 44555555432100 1111111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 ---YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 ---~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ +++..||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 122344555 589999999998
No 406
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.91 E-value=0.26 Score=62.98 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 269 (892)
..+++.|+|++|+|||+||.++... ...+=..++|+.+...++... ++.++.+. ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3568999999999999999998873 333323578888887776666 33333111 11223445555555
Q ss_pred HHh-cCCeEEEEEecC
Q 042509 270 EAI-AKKKFLLVLDDV 284 (892)
Q Consensus 270 ~~l-~~kr~LlVlDd~ 284 (892)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 544 356779999998
No 407
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.90 E-value=0.13 Score=53.74 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccce-eEEEEeCCC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKI-RMWVCVSDP 237 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 237 (892)
--++++.+..-. +.+-++|+|.+|+|||+|++++.+.... .+-+. ++++-+++.
T Consensus 162 GiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred cchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 345666665432 2356899999999999999998883211 12232 356666653
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.81 E-value=0.11 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.71 E-value=0.2 Score=53.06 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhC
Q 042509 178 KNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+.+.+.... .+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 2568999999999999999988875
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.66 E-value=0.096 Score=52.23 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.63 E-value=0.1 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 412
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.62 E-value=0.093 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.+++|+|..|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.59 E-value=0.083 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred eEEEEEEecCCchHHHHHHHHh-C
Q 042509 196 VQTISVVGMGGIGKTTLAQMAY-N 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~-~ 218 (892)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 414
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.53 E-value=0.12 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.51 E-value=0.12 Score=49.92 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.48 E-value=0.13 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.43 E-value=0.2 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999883
No 418
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.40 E-value=0.36 Score=52.47 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=50.1
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhhhcccc-eeEEEEeCCCCC-HHHHHHHHHHhccCC-------CCCCCCHHH--
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDVRNHFK-IRMWVCVSDPFD-EFSVAKSIIEGLEGE-------TSNLGSLQS-- 263 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 263 (892)
.+-++|.|.+|+|||+|| .++.+. . +-+ .++++-+++... ..++.+.+...=... ..+......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999995 577773 2 345 357788877543 344555554321111 111111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecC
Q 042509 264 ---YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 264 ---~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
..-.+.+++ +++..||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112344555 589999999998
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.37 E-value=0.13 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.36 E-value=0.12 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.35 E-value=0.14 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999887
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.33 E-value=0.18 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998874
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.33 E-value=0.11 Score=50.45 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.32 E-value=0.13 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 425
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.32 E-value=0.13 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.31 E-value=0.12 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.30 E-value=0.14 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998863
No 428
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.28 E-value=0.13 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999987
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.23 E-value=0.13 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 430
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.20 E-value=0.18 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.20 E-value=0.12 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.17 E-value=0.12 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+|.|.|++|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 433
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.15 E-value=0.69 Score=50.49 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=35.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEG 250 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 250 (892)
..++.|.|.+|+||||||.+++.+...+ =..++|++.. -+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 4689999999999999998888743222 2356776554 3555666655543
No 434
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.09 E-value=0.15 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998874
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.07 E-value=0.14 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 436
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.06 E-value=0.19 Score=47.75 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=59.2
Q ss_pred hcCcCCcceEEcCCC-CCC-----cccccccCCCCCCEEeccCcCCc----cccchhhhccccCCeeccccccccc----
Q 042509 568 IENFMYLRFLKLSKA-EIV-----ELPETCCELFNLQTLEMEDCCNL----KRLPQEIGKLVNLRYLIYNDSYLHY---- 633 (892)
Q Consensus 568 i~~l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~----~~lp~~i~~l~~L~~L~~~~~~l~~---- 633 (892)
+.+-..|++|+|+++ .|. .+-+.+..-..|+.|+|++|..- ..+.+.+..-+.|++|.++.|.|+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456678999999986 676 35566777889999999999833 2345556677889999888887762
Q ss_pred -ccccccCCcCCCcCCceE
Q 042509 634 -LPRGIERLTCLRTLSEFV 651 (892)
Q Consensus 634 -lp~~i~~L~~L~~L~l~~ 651 (892)
+-..+..-+.|++|++..
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 223344445566666543
No 437
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.05 E-value=0.13 Score=48.54 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.04 E-value=0.14 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999988
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.03 E-value=0.16 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.|+|+.|+||||||..+++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 440
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.03 E-value=0.75 Score=50.43 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCH-HHHHHHH
Q 042509 180 KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDE-FSVAKSI 247 (892)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i 247 (892)
++++.|..-. +.+-++|.|..|+|||+|++++.+. .+-+.++++-+++.... .++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4555555332 3457899999999999999998762 23357888888876554 3445543
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.02 E-value=0.14 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.98 E-value=0.15 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.-.+++|+|.+|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998873
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.95 E-value=0.19 Score=57.70 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=35.9
Q ss_pred CceecchhhHHHHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCC
Q 042509 169 DRVCGRDDEKNKLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
+.++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35899998888887777643 36899999999999999999883
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.93 E-value=0.16 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 445
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.88 E-value=0.15 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 446
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.85 E-value=0.38 Score=56.25 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=57.9
Q ss_pred cCCCceecchhhHHHHHHHHhcCCcc-------cccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC
Q 042509 166 IDEDRVCGRDDEKNKLIRKLLSESSE-------EQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF 238 (892)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 238 (892)
+.-.++.|.++.++++.+.+.-+-.. .....+-+.++|++|.|||.+|+++++. .... ++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~--- 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK--- 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec---
Confidence 34456788888888887766532110 1122445789999999999999999994 3222 23332
Q ss_pred CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCCeEEEEEecCC
Q 042509 239 DEFSVAKSIIEGLEGETSNLGSLQSYLLRIYE-AIAKKKFLLVLDDVW 285 (892)
Q Consensus 239 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDd~w 285 (892)
. .+++.... .... .....+.+ .-+..+.+|++|+++
T Consensus 544 -~----~~l~s~~v-----Gese-~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 544 -G----PELLTMWF-----GESE-ANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -H----HHHHTTTC-----SSCH-HHHHHHHHHHHTTCSEEEECSCGG
T ss_pred -c----chhhcccc-----chHH-HHHHHHHHHHHHcCCceeechhhh
Confidence 1 12222211 1222 23333333 335678999999984
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.76 E-value=0.15 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.75 E-value=0.15 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.74 E-value=0.15 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.70 E-value=0.15 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.69 E-value=0.15 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999877
No 452
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.69 E-value=0.67 Score=62.12 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=75.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHHh-cC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETSNL-GSLQSYLLRIYEAI-AK 274 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l-~~ 274 (892)
+-|.++|++|+|||++++.+... ..+ + ..+.++.+...+...++..+-..+....... ... ..-. .|
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~--l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~-------~~p~~~G 1373 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRA--FPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV-------LRPTQLG 1373 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGG--CTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE-------EEESSTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHh--CCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc-------cCCCcCC
Confidence 34789999999999998887762 221 2 3467888888888777777654432111000 000 0001 27
Q ss_pred CeEEEEEecCCCCCcCChh------hhhhhcCCC-----C-------CCcEEEEEcCchh------H-HhhccCCceEeC
Q 042509 275 KKFLLVLDDVWNDDRTKWE------PLNHCLMNG-----Q-------CGSKILVTTRKET------V-SRMMESTNVMFI 329 (892)
Q Consensus 275 kr~LlVlDd~w~~~~~~~~------~l~~~l~~~-----~-------~gs~iivTtr~~~------v-~~~~~~~~~~~l 329 (892)
|+.++++||+.-...+.|. .++..+..+ . .+..+|.|..... + .+......++.+
T Consensus 1374 k~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i 1453 (3245)
T 3vkg_A 1374 KWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLV 1453 (3245)
T ss_dssp CEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEEC
T ss_pred ceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEe
Confidence 8899999999544444332 233222211 1 1223344432221 1 111233457788
Q ss_pred CCCCHHHHHHHHHHH
Q 042509 330 EELSESECWRLFQQL 344 (892)
Q Consensus 330 ~~L~~~~~~~lf~~~ 344 (892)
...+.++-..+|...
T Consensus 1454 ~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 888888888887653
No 453
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.69 E-value=0.25 Score=53.00 Aligned_cols=88 Identities=13% Similarity=0.179 Sum_probs=51.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhh--------cccc-eeEEEEeCCCC-CHHHHHHHHHHh--ccC-----CCCCCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVR--------NHFK-IRMWVCVSDPF-DEFSVAKSIIEG--LEG-----ETSNLG 259 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~ 259 (892)
+-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+.. ...++.+++.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999988743321 1111 56777777643 344455554432 110 011222
Q ss_pred CHHH-----HHHHHHHHh---cCCeEEEEEecC
Q 042509 260 SLQS-----YLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 260 ~~~~-----~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
.... ..-.+.+++ +++..|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2222 222345555 378999999998
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.64 E-value=0.16 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 455
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.63 E-value=0.18 Score=50.79 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=55.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC-CCCHHHHHHHHHH--hccCCCCCCCCHHHHHHHHHHHh
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD-PFDEFSVAKSIIE--GLEGETSNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 272 (892)
..+++|+|+.|+|||||++.+.. .+...+...+++.-.. .+-.... ..++. .++. +. ......+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHHH
Confidence 46999999999999999999887 2322223333332111 0000000 00000 0000 11 12345566666
Q ss_pred cCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcCchhHH
Q 042509 273 AKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTRKETVS 318 (892)
Q Consensus 273 ~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 318 (892)
..++=++++|..- +......+.... ..|.-|++||....+.
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 5566688889984 323222222222 2366788888765543
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.63 E-value=0.16 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 457
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.56 E-value=0.14 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|.|.|++|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 458
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.54 E-value=0.16 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.53 E-value=0.16 Score=51.31 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998873
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.46 E-value=0.15 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 461
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.42 E-value=0.5 Score=41.59 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.9
Q ss_pred ceEEcCCCCCC--cccccccCCCCCCEEeccCcCCccccch-hhhccccCCeeccccccc
Q 042509 575 RFLKLSKAEIV--ELPETCCELFNLQTLEMEDCCNLKRLPQ-EIGKLVNLRYLIYNDSYL 631 (892)
Q Consensus 575 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~~~~~~l 631 (892)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|. .+..+++|++|.+..|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 8886543 468899999888 666764 457788888886666644
No 462
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.30 E-value=0.2 Score=56.83 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999998887
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.22 E-value=0.17 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred cceEEEEEEecCCchHHHHHHHHhC
Q 042509 194 KAVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 194 ~~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999876
No 464
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.11 E-value=0.16 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 465
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.09 E-value=0.24 Score=53.57 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=51.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcc--cceeEEEEeCCCC-CHHHHHHHHHHhccC-------CCCCCCCHH----
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNH--FKIRMWVCVSDPF-DEFSVAKSIIEGLEG-------ETSNLGSLQ---- 262 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 262 (892)
+-++|.|.+|+|||+|+.+++++....+. =+.++++-+++.. ...++.+++...=.. ...+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999885433211 1356777777643 344555555542100 011111111
Q ss_pred -HHHHHHHHHh---cCCeEEEEEecC
Q 042509 263 -SYLLRIYEAI---AKKKFLLVLDDV 284 (892)
Q Consensus 263 -~~~~~l~~~l---~~kr~LlVlDd~ 284 (892)
...-.+.+++ +++..|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1222344554 479999999997
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.06 E-value=0.19 Score=51.61 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999886
No 467
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.05 E-value=0.2 Score=50.71 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999887
No 468
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.00 E-value=0.61 Score=59.74 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS-----NLGSLQSYLLRIY 269 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 269 (892)
..+++.|+|.+|+||||||.+++.. ....=..++|++.....+... ++.++.... +..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3469999999999999999998874 332224688888877666542 444443221 2345666666666
Q ss_pred HHh-cCCeEEEEEecCC
Q 042509 270 EAI-AKKKFLLVLDDVW 285 (892)
Q Consensus 270 ~~l-~~kr~LlVlDd~w 285 (892)
... +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456699999984
No 469
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.98 E-value=0.17 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.86 E-value=0.21 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998864
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.82 E-value=0.25 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 472
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.81 E-value=0.2 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 473
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.77 E-value=0.53 Score=51.27 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhh----hcccc-eeEEEEeCCCCC-HHHHHHHHHHhccC-------CCCCCCCH
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDV----RNHFK-IRMWVCVSDPFD-EFSVAKSIIEGLEG-------ETSNLGSL 261 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~ 261 (892)
.+-++|.|.+|+|||+|| ..+.+.... ..+-+ .++++-+++... +.++.+.+...=.. ...+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 346899999999999995 566664221 01234 477888887543 44455555431100 01111111
Q ss_pred HH-----HHHHHHHHh--cCCeEEEEEecC
Q 042509 262 QS-----YLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 262 ~~-----~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.. ..-.+.+++ +++..||++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11 122344555 589999999998
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.75 E-value=0.19 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999977
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.73 E-value=0.23 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.+.|.|.|..|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999884
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.69 E-value=0.56 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+|.|.|..|+||||+++.+.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.68 E-value=0.091 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 478
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.62 E-value=0.4 Score=49.64 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=27.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSD 236 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 236 (892)
..++|+|+|-||+||||+|..+... ....=..++-|....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 4688999999999999999887763 222222455566543
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.61 E-value=0.21 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.+++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 480
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.58 E-value=1 Score=49.65 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=39.4
Q ss_pred HHHHHHhcCCcccccceEEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCC-CHHHHHHH
Q 042509 180 KLIRKLLSESSEEQKAVQTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPF-DEFSVAKS 246 (892)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 246 (892)
++++.|..-. +-+-++|.|..|+|||+|++++.+. .+-+.++++-+++.. ...+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 4556665432 3457899999999999999999773 234678888887753 33344444
No 481
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.43 E-value=0.23 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
.++|.|+|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999987
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.43 E-value=0.23 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.39 E-value=0.23 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 484
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.23 E-value=0.24 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.21 E-value=0.23 Score=45.48 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 486
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.15 E-value=0.52 Score=51.27 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=49.1
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCChhhhcccc-eeEEEEeCCCCC-HHHHHHHHHHhc--c------CCCCCCCC----
Q 042509 196 VQTISVVGMGGIGKTTLA-QMAYNDPDVRNHFK-IRMWVCVSDPFD-EFSVAKSIIEGL--E------GETSNLGS---- 260 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l--~------~~~~~~~~---- 260 (892)
.+-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++... ..++.+.+...= . .+.++...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 345789999999999995 5777742 234 357787877543 334444443310 0 01111110
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEecC
Q 042509 261 LQSYLLRIYEAI--AKKKFLLVLDDV 284 (892)
Q Consensus 261 ~~~~~~~l~~~l--~~kr~LlVlDd~ 284 (892)
.....-.+.+++ +++..||++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112223344444 689999999997
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.15 E-value=0.63 Score=58.78 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHHHHh
Q 042509 198 TISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGET-----SNLGSLQSYLLRIYEAI 272 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l 272 (892)
++.|+|.+|+||||||.+++. .....=..++|++....++... ++.++... .+..+.++....+....
T Consensus 385 lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Q ss_pred -cCCeEEEEEecC
Q 042509 273 -AKKKFLLVLDDV 284 (892)
Q Consensus 273 -~~kr~LlVlDd~ 284 (892)
+.+.-+||+|-+
T Consensus 458 ~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 458 RSGAVDVIVVDSV 470 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HhcCCCEEEECCH
No 488
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.12 E-value=0.24 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
..+++|+|..|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999873
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.12 E-value=0.23 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 042509 198 TISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
-|+|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 490
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.03 E-value=1.8 Score=42.54 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCC--------CCCC-----CCHHHHH
Q 042509 199 ISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGE--------TSNL-----GSLQSYL 265 (892)
Q Consensus 199 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~~-----~~~~~~~ 265 (892)
+.|+|..|.|||.+|..+... . . ..++++. ....-..+..+.+.+ ++.. .... ...+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 778999999999999887762 2 1 2344443 221112222333222 2111 0000 1122332
Q ss_pred HHHHHHhcCCeEEEEEecCCCCCcCChhhhhhhcCCCCCCcEEEEEcC
Q 042509 266 LRIYEAIAKKKFLLVLDDVWNDDRTKWEPLNHCLMNGQCGSKILVTTR 313 (892)
Q Consensus 266 ~~l~~~l~~kr~LlVlDd~w~~~~~~~~~l~~~l~~~~~gs~iivTtr 313 (892)
... +.+.++--+||+|+++.-....+..+...++ ...++.+|..
T Consensus 184 ~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 222 2344445699999997655556666655543 2334555543
No 491
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.01 E-value=0.34 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 492
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.99 E-value=0.26 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 042509 198 TISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 198 vi~I~G~~GiGKTtLa~~v~~ 218 (892)
+.+|+|..|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999998865
No 493
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.95 E-value=0.26 Score=53.49 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhCC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
...+|.|+|.+|+||||++.++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888873
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.81 E-value=0.29 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhC
Q 042509 195 AVQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 195 ~~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 356999999999999999999987
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.79 E-value=0.24 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998864
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.74 E-value=0.35 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999875
No 497
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.70 E-value=0.26 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 042509 196 VQTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 196 ~~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
..+++|+|+.|+|||||.+.+.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999987
No 498
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.68 E-value=0.51 Score=45.65 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=53.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCChhhhcccceeEEEEeCCCCCHHHHHHHHHHhccCCCC----------CCCCHHHHHH
Q 042509 197 QTISVVGMGGIGKTTLAQMAYNDPDVRNHFKIRMWVCVSDPFDEFSVAKSIIEGLEGETS----------NLGSLQSYLL 266 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 266 (892)
-.|.+.|.||+||||+|..+.... ....++ +.++.+....... ....+..+..... ...+++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~--~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAE--TEALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHH--HHHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChh--HHHHhcCccccCcceeecCCcccccccHHHH--
Confidence 358889999999999988877732 222233 4444444322222 1222333322110 11222221
Q ss_pred HHHHHhcCCeEEEEEecCCCC------CcCChhhhhhhcCCCCCCcEEEEEcCch
Q 042509 267 RIYEAIAKKKFLLVLDDVWND------DRTKWEPLNHCLMNGQCGSKILVTTRKE 315 (892)
Q Consensus 267 ~l~~~l~~kr~LlVlDd~w~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 315 (892)
+..+.=++|+|++-.. ...-|..+...++ .|-.|+.|+..+
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2224558999987322 1124555544333 355688887744
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.67 E-value=0.26 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYN 218 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~ 218 (892)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999875
No 500
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.62 E-value=0.27 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 042509 197 QTISVVGMGGIGKTTLAQMAYND 219 (892)
Q Consensus 197 ~vi~I~G~~GiGKTtLa~~v~~~ 219 (892)
.-|+|+|.+|+|||||.+.+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999874
Done!