Query 042512
Match_columns 513
No_of_seqs 250 out of 2105
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.9E-56 4.2E-61 445.6 55.6 435 46-484 12-450 (455)
2 PRK10189 MATE family multidrug 100.0 1.5E-51 3.2E-56 414.5 57.3 434 46-482 24-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7.6E-51 1.6E-55 409.5 57.1 428 47-477 6-444 (464)
4 PRK01766 multidrug efflux prot 100.0 8.8E-49 1.9E-53 396.1 57.3 435 44-481 5-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 8.7E-49 1.9E-53 394.1 54.0 425 47-476 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.2E-48 2.7E-53 389.7 54.4 423 47-481 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 1.5E-36 3.3E-41 311.7 52.3 413 53-477 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.4E-36 7.3E-41 308.1 49.2 415 54-477 2-434 (488)
9 KOG1347 Uncharacterized membra 100.0 6.1E-37 1.3E-41 302.5 35.5 447 47-495 24-470 (473)
10 TIGR00797 matE putative efflux 100.0 1.6E-35 3.5E-40 288.9 44.1 338 59-399 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 1.1E-34 2.5E-39 289.7 46.4 405 53-476 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.1E-29 1.1E-33 249.0 50.1 386 81-477 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2.3E-27 5E-32 232.4 51.7 421 50-478 6-438 (518)
14 PRK10459 colanic acid exporter 100.0 7.9E-28 1.7E-32 246.1 47.2 398 50-476 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 9.5E-26 2.1E-30 230.2 42.7 392 48-461 3-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 7E-21 1.5E-25 190.4 28.9 210 267-479 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 6.8E-21 1.5E-25 190.4 27.8 207 268-476 5-211 (441)
18 PRK00187 multidrug efflux prot 99.9 1.1E-20 2.4E-25 190.7 28.0 208 266-477 4-215 (464)
19 PRK10189 MATE family multidrug 99.9 2.1E-20 4.5E-25 188.7 28.9 207 267-476 24-236 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.5E-20 5.4E-25 187.8 25.5 209 267-477 7-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.3E-19 2.8E-24 183.5 29.4 211 265-478 5-219 (456)
22 PF01943 Polysacc_synt: Polysa 99.8 1.7E-16 3.7E-21 149.5 33.7 271 53-340 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 5E-17 1.1E-21 167.1 29.7 204 48-253 220-428 (502)
24 TIGR00797 matE putative efflux 99.8 1.5E-16 3.2E-21 155.2 26.0 194 280-476 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 2.7E-18 5.8E-23 148.2 7.1 162 280-443 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 4.7E-15 1E-19 148.6 31.3 205 48-254 195-404 (451)
27 COG0728 MviN Uncharacterized m 99.7 1.7E-13 3.7E-18 135.2 35.0 232 48-288 229-465 (518)
28 TIGR02900 spore_V_B stage V sp 99.7 5.6E-15 1.2E-19 151.4 25.7 202 46-252 220-433 (488)
29 PF01554 MatE: MatE; InterPro 99.7 2.5E-17 5.5E-22 142.1 5.6 160 59-219 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 1.9E-13 4.1E-18 140.1 34.5 200 47-252 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 6.6E-13 1.4E-17 123.4 31.3 247 69-339 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 2.4E-13 5.1E-18 136.1 26.1 199 46-251 210-410 (416)
33 COG2244 RfbX Membrane protein 99.6 1.9E-12 4.2E-17 132.3 27.9 187 46-238 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 3E-09 6.5E-14 107.6 33.0 420 54-476 4-469 (549)
35 KOG1347 Uncharacterized membra 99.3 2E-10 4.4E-15 114.5 21.1 206 268-477 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.2 4E-07 8.8E-12 86.2 34.5 416 49-476 6-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 1.4E-06 3E-11 79.2 29.7 262 48-319 8-286 (345)
38 PF14667 Polysacc_synt_C: Poly 98.4 3E-05 6.6E-10 65.1 17.6 80 173-254 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.4 7.5E-05 1.6E-09 76.1 21.9 203 50-253 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00042 9.1E-09 64.9 20.7 188 276-477 3-191 (273)
41 PF14667 Polysacc_synt_C: Poly 98.1 1.9E-05 4.2E-10 66.3 9.4 79 396-477 2-80 (146)
42 PF07260 ANKH: Progressive ank 98.0 0.0082 1.8E-07 55.2 23.4 161 267-433 6-169 (345)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0024 5.1E-08 59.0 20.8 164 295-475 7-171 (251)
44 KOG2864 Nuclear division RFT1 97.9 0.0088 1.9E-07 57.6 23.6 199 51-251 239-447 (530)
45 COG4267 Predicted membrane pro 96.8 0.45 9.7E-06 45.1 37.2 322 98-446 71-414 (467)
46 COG4267 Predicted membrane pro 86.5 32 0.0007 33.2 19.4 136 324-476 75-210 (467)
47 PF02487 CLN3: CLN3 protein; 75.8 87 0.0019 31.0 16.8 57 40-96 232-293 (402)
48 PF05975 EcsB: Bacterial ABC t 63.8 1.6E+02 0.0034 29.2 16.8 41 344-384 88-128 (386)
49 COG2211 MelB Na+/melibiose sym 60.6 2E+02 0.0043 29.2 27.4 36 49-84 10-46 (467)
50 PF04505 Dispanin: Interferon- 56.8 63 0.0014 23.7 6.5 38 329-366 36-73 (82)
51 TIGR00822 EII-Sor PTS system, 42.7 2.8E+02 0.0061 25.7 17.3 33 322-354 109-141 (265)
52 PF12794 MscS_TM: Mechanosensi 40.0 3.6E+02 0.0077 26.1 23.0 26 346-371 118-143 (340)
53 KOG2533 Permease of the major 38.8 4.5E+02 0.0099 27.0 33.2 62 185-246 155-220 (495)
54 TIGR00893 2A0114 d-galactonate 38.2 3.7E+02 0.0079 25.7 22.7 17 199-215 346-362 (399)
55 PF14184 YrvL: Regulatory prot 33.3 2.7E+02 0.0057 22.7 13.2 100 134-235 7-107 (132)
56 PF05684 DUF819: Protein of un 32.4 5E+02 0.011 25.6 12.5 14 345-358 73-86 (378)
57 PF06687 SUR7: SUR7/PalI famil 31.0 3.7E+02 0.008 23.6 13.4 74 46-119 106-182 (212)
58 PF05977 MFS_3: Transmembrane 30.3 6.4E+02 0.014 26.2 38.8 47 53-99 12-60 (524)
59 PF06963 FPN1: Ferroportin1 (F 30.2 5.8E+02 0.013 25.7 19.1 51 307-367 38-88 (432)
60 KOG2532 Permease of the major 29.0 2.6E+02 0.0056 28.5 8.2 106 392-498 133-240 (466)
61 PF00558 Vpu: Vpu protein; In 27.6 75 0.0016 23.2 2.9 10 475-484 31-40 (81)
62 PF03904 DUF334: Domain of unk 26.1 3.5E+02 0.0076 24.2 7.2 39 123-161 142-180 (230)
63 PF05313 Pox_P21: Poxvirus P21 26.0 2.7E+02 0.0058 23.9 6.2 27 227-253 135-161 (189)
64 PTZ00370 STEVOR; Provisional 25.8 1.2E+02 0.0026 28.1 4.5 36 450-485 254-292 (296)
65 TIGR00383 corA magnesium Mg(2+ 24.7 2.3E+02 0.0049 27.0 6.7 24 456-479 294-317 (318)
66 PRK09546 zntB zinc transporter 24.6 2.2E+02 0.0048 27.3 6.5 24 456-479 300-323 (324)
67 PF03547 Mem_trans: Membrane t 22.8 5.3E+02 0.011 25.2 9.1 14 358-371 35-48 (385)
68 COG4176 ProW ABC-type proline/ 21.9 4.2E+02 0.009 24.6 7.0 80 47-128 199-285 (290)
69 PRK01637 hypothetical protein; 21.3 6.8E+02 0.015 23.4 18.6 9 337-345 116-124 (286)
70 PRK02251 putative septation in 20.9 3.6E+02 0.0078 20.1 8.0 39 58-96 35-74 (87)
71 TIGR03141 cytochro_ccmD heme e 20.5 2.4E+02 0.0052 17.8 5.1 19 455-473 8-26 (45)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.9e-56 Score=445.58 Aligned_cols=435 Identities=26% Similarity=0.342 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK 125 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 125 (513)
.++..|+++++++|.+++++++.+++++|++++||+|++++++.+++.++..++ ..+..|++.|+++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 356899999999999999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHH
Q 042512 126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTF 204 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (513)
++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887776 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CccchhHHHHHHHHHHHHHHHHHHHHHhcc-cccccCCCCHHhHHHHHHHHHHHhHH
Q 042512 205 CATFAIILHIPINYLLVSV-LN-LGLKGIALSSVWTNFNLVISLILYIMISGV-HEKTWGGISLECFKEWRSLLNLAIPS 281 (513)
Q Consensus 205 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 281 (513)
.+++..++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.++++ ......+..+++++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999987764 22222333367889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042512 282 CISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSF 361 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 361 (513)
++++......+...+.+++++|+ +++|+|+++.++.++.+++..+++++.+|++++++|+||++++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 042512 362 MLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVA 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 441 (513)
+++...++.++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.+++.++++.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 042512 442 VWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQ 484 (513)
Q Consensus 442 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (513)
+++.... +|..|+|+++..++.++.++..++++|.+|+++..
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV 450 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9998877 89999999999999999999999999999987754
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.5e-51 Score=414.51 Aligned_cols=434 Identities=17% Similarity=0.178 Sum_probs=400.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK 125 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 125 (513)
.-+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|++
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345589999999999999999999999999999999999999999999998877 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCG--QEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
++++..+.++.+++.++++.+++ +.+.++++.++. .++|+.+.+..|+++..++.|+..+...+.+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 99999999999999999988877 778889998884 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHHHHHHHhcc--cccccCC-CCHHhHHHHHHHH
Q 042512 203 TFCATFAIILHIPINYLLVSVL----NLGLKGIALSSVWTNFNLVISLILYIMISGV--HEKTWGG-ISLECFKEWRSLL 275 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 275 (513)
+..+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++++ .+.++++ +++.+++.+|+++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 262 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM 262 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence 9999999999999999999853 7899999999999999998887666654322 1222222 2234678899999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 042512 276 NLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAII 355 (513)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~ 355 (513)
+.|+|.+++.........+.+.+++.+|+ +++|+|+++.++.++.+++..+++++..|++++++|+||.+++++..+.
T Consensus 263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 263 GIGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999888888888999976 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 042512 356 GLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYL 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (513)
+.++++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|+
T Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~ 420 (478)
T PRK10189 341 VFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWG 420 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 042512 436 VGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQ 482 (513)
Q Consensus 436 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
+.+|+.+++....++|+.|+|++..+++.+..++.++++++.+|+|+
T Consensus 421 v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 421 CRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 99999999988778999999999999999999999999999999873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.6e-51 Score=409.49 Aligned_cols=428 Identities=25% Similarity=0.337 Sum_probs=393.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhH
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKL 126 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 126 (513)
++..|++++.++|.++++++..+.+.+|+.+++|+|++++++++++.++..+. ..+..|++.+..+.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 45799999999999999999999999999999999999999999999998887 68889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 042512 127 LGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCA 206 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 206 (513)
+++.++.++.+.++++++..++..+.++++.+++.++|+.+.+..|+++..++.|+..+...+++++++.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998877775577899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHHHHHHHhcccc-cc-cCCCCHHhHHHHHHHHHHHhH
Q 042512 207 TFAIILHIPINYLLVSVL----NLGLKGIALSSVWTNFNLVISLILYIMISGVHE-KT-WGGISLECFKEWRSLLNLAIP 280 (513)
Q Consensus 207 ~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~p 280 (513)
+++.++|++++++|++++ ++|+.|+++|+.+++....+...++++++++.+ .+ ++++.+++++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999863 489999999999999888877766666543221 11 122224577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 042512 281 SCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSS 360 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 360 (513)
.+++++.+...+.+++.+++++|+ +++|+++++.++..+.+.+..+++++..++++|++|+||++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCC--cH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 042512 361 FMLGFTALVFTAIVRNIWASMFTQ--DA---EIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYL 435 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (513)
++++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 436 VGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 436 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
+++|+.+++.+++++|+.|+|+++.+++.+..+....+++.+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999988777666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.8e-49 Score=396.11 Aligned_cols=435 Identities=23% Similarity=0.376 Sum_probs=400.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCC
Q 042512 44 FLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAAR 123 (513)
Q Consensus 44 ~~~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 123 (513)
++.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567899999999999999999999999999999999999999999999887766 67888999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 124 YKLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
+++.++.++.++.+.+++++++.++ +.+.++++.+++.++++.+.+..|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999888777 777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc--cccCCCCHHhHHHHHHHHH
Q 042512 203 TFCATFAIILHIPINYLLVSV----LNLGLKGIALSSVWTNFNLVISLILYIMISGVHE--KTWGGISLECFKEWRSLLN 276 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 276 (513)
++.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.+++++.+ +.+.++.+++++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 2579999999999999999998877776543321 1122222456788999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 042512 277 LAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIG 356 (513)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~ 356 (513)
.++|.+++...+...+.++..+++++|+ +++|+++++.++.++...+..+++.+..+.+++++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999976 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 042512 357 LLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLV 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 436 (513)
.++++.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++.+++....+++++.||++.+++.++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 042512 437 GMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDL 481 (513)
Q Consensus 437 ~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
.+|..+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887899999999999999999999988888776654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=8.7e-49 Score=394.05 Aligned_cols=425 Identities=16% Similarity=0.164 Sum_probs=389.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK 125 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 125 (513)
++..|++++.++|.++++++..+++++|+.+++| +|++++++++++.++..+. ..+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 3578999999999999999999999999999999 6999999999999998877 6788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHH
Q 042512 126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTF 204 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (513)
++++.+++++.++++++++..++ +.+.++++.+++.+++..+.+..|+++..++.|+..+...+.+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988877 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHH
Q 042512 205 CATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCIS 284 (513)
Q Consensus 205 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (513)
.++.+.++|+++++++++.+++|+.|+++|+++++.+..++..++.++++...+...+..+++++.+|++++.|.|..++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999998877766543322111112245778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 042512 285 VCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLG 364 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (513)
.....+...+.+.+++++|+ ++++|+++++.++..+.+.+..+++++..|.+++++|+||++++++..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999873 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhhcCC-cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 042512 365 FTALVFTAIVRNIWASMFTQ-DAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVW 443 (513)
Q Consensus 365 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 443 (513)
++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.+++++..+..+.+++.||++.++..++... ++++|..++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHH
Confidence 99999999999999999995 7899999999999999999999999999999999999999999997764 789999999
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 444 LSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 444 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
+... +|+.|+|+++.+++.+..++..+++++
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 8765 799999999999999988888776654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=389.71 Aligned_cols=423 Identities=18% Similarity=0.167 Sum_probs=373.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGRL-GDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK 125 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 125 (513)
.++.|++++.++|.++++++..+++.+|+.+++|+ |++++++++++.++..+. ..+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35689999999999999999999999999999997 777999999999998887 7888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHH
Q 042512 126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTF 204 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (513)
++++..++++.+.++++++..++ ..+.++++.+++.++|+.+.+..|+++..++.|+..+..++.+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988876 77888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCCHHh-HHHHHHHHHHHhHHH
Q 042512 205 CATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHE-KTWGGISLEC-FKEWRSLLNLAIPSC 282 (513)
Q Consensus 205 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~p~~ 282 (513)
.+++..++|+++++++++.+++|+.|+++|+.+++.+..++..+++.++++.+ .+.+.+ +++ ++.+|+++++|.|.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence 99999999999999999988899999999999999999888777776543221 111112 222 347899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 042512 283 ISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFM 362 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 362 (513)
+++......+.+.+.+++++|+ +++|+|+++.++.++.+++..+++++.+|.+++++|+||++++++..+.+.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC---CchhHHHHHHHHHHHHHH
Q 042512 363 LGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTAR---PKLGANINLGCFYLVGMP 439 (513)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~ 439 (513)
++.+++++++++++++..+|++|+|+.+.+..++++.++..+......+..+++++.+| ++.++.+++++.|+..++
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~ 400 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLT 400 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764443345455555666665 999999999887642222
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 042512 440 VAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDL 481 (513)
Q Consensus 440 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
. . .+|..|+|++..+++.++.++..+++++. |+|
T Consensus 401 ~-----~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 401 L-----P--WLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred H-----H--HcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 2 2 37999999999999999999988776554 754
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.5e-36 Score=311.67 Aligned_cols=413 Identities=13% Similarity=0.075 Sum_probs=349.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhCcCChhHHHH
Q 042512 53 IANIALPMILTGLLLYSRSMISMLFLGR-LGDLAL-AGGSLAIGFGNITGYSLL-SGLAMGMETICGQAFGAARYKLLGL 129 (513)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~-~~~~~a~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 129 (513)
+.|.+....++++++.+++++|.++++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ +++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 999999 899999999876633333 568888887777654322 56776
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHH
Q 042512 130 TLQRTILLLLLSSI-PIAFL-WLNMKTILLFC--GQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFC 205 (513)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (513)
.+.+.+.....++. +..++ +.+++++..++ +.+++..+.+..|++++.++.++..+..+.++++|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 34444 67777787777 4466777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhH--HHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHH
Q 042512 206 ATFAIILHIPINYLLVSVLNLGLKGIA--LSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCI 283 (513)
Q Consensus 206 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 283 (513)
+++..++++...+++. .++|..|++ ++++++..+..++..++.++++.. .+ .++ +.+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL-LK-PRF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cc-CcC-CCCChhHHHHHHHHHHHHH
Confidence 9998887766443333 468999988 999999999988876666554321 11 111 2356778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHH-hHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 042512 284 SVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYI-FPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFM 362 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 362 (513)
++....+...+|+.+.+.+++ +++++|+.+.++.++... +..+++++..|.+++++|+||.+++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988777765 899999999999988765 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhcCC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q 042512 363 LGFTALVFTAIVRNIWASMFTQ----DAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGM 438 (513)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 438 (513)
+++|++++++.+++++..++.+ |+|.++.+..++++++++.++.+++.+....+++.||+|.+++.++.+. ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 5677889999999999999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 439 PVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 439 ~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
++++++.+. +|..|+|+|+.+++.+..++..++++|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888765 8999999999999999999888777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.4e-36 Score=308.12 Aligned_cols=415 Identities=14% Similarity=0.145 Sum_probs=349.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHHH
Q 042512 54 ANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQ 132 (513)
Q Consensus 54 ~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 132 (513)
.+.+.|.++++++..+.+++|+++++| +|++++|+++.+.++..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 9999999999999998887555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 042512 133 RTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAII 211 (513)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 211 (513)
+++.+.++.+++++++ +.+.+++...+..+++. ..++++..+..++..+.....+.+++.+|++..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888776 66666666666555543 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc--cccCCCCHHhHHHHHHHHHHHhHHHHH
Q 042512 212 LHIPINYLLVSV-----LNLGLKGIALSSVWTNFNLVISLILYIMISGVHE--KTWGGISLECFKEWRSLLNLAIPSCIS 284 (513)
Q Consensus 212 ~~i~~~~~li~~-----~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (513)
+++.++..++.. .+.++.|+++++.+++.+..+...++.+++++.+ ..+.+.++.+++.+|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 2456788889999999999888766654443211 111112245577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCc-----hh---HHHHHH-HHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 042512 285 VCLEWWWYEIMILLCGLLLN-----PQ---ATVASM-GILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAII 355 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-----g~---~~~a~~-~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~ 355 (513)
++...+...+|+.++++... .. +..+.| +.+.++.++...+..+++++..|.+++++|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888875421 01 233333 3566777888778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 042512 356 GLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYL 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (513)
+.++..+++.|.++++..+++++..++.++++ +.++++++++..++..+.....+.+++.||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 436 VGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 436 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
+++++++.+...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998887733458999999999999999999998887763
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=6.1e-37 Score=302.52 Aligned_cols=447 Identities=41% Similarity=0.685 Sum_probs=424.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhH
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKL 126 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 126 (513)
..+.|++++++.|.++..+.+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 042512 127 LGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCA 206 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 206 (513)
...+..++..+....+++...++.+.++++..+++++++...+..|.+...+..+..........+++++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHH
Q 042512 207 TFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVC 286 (513)
Q Consensus 207 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 286 (513)
....++++.+++++++..++|..|++++..+++.+.......|..... ....|..++.. .+.++++++.++|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999988886555 45556666555 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 042512 287 LEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFT 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (513)
++++.+....+..+.+++...+++..++..++....+++..+++.+...++++.+|+++.+++|.....+...++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998656899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 367 ALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSF 446 (513)
Q Consensus 367 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 446 (513)
.+..+..+.+.+..+|++|+|+.+...+..+++++..++++.+.+..+..++.|+++...++++..++++++|..+.+..
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhhcCCCC
Q 042512 447 YSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATI 495 (513)
Q Consensus 447 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (513)
..++|..|.|.++..+..+..........+.+|+++..+..++......
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 8889999999999999888888888888999999999999888765544
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.6e-35 Score=288.86 Aligned_cols=338 Identities=28% Similarity=0.454 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHHHHHHHHH
Q 042512 59 PMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLL 138 (513)
Q Consensus 59 p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 138 (513)
|.++++++..+.+.+|+.+++++|++++|+++.+.++..+. ..+..|++++..+.++++.|++|+|+.++.++..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988776 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 042512 139 LLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPIN 217 (513)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 217 (513)
..++++.+++ +.+.+++..+++.+++..+.+..+++++.+..++..+...+.+.+++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998877 788889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042512 218 YLLVS-VLN-LGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIM 295 (513)
Q Consensus 218 ~~li~-~~~-~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 295 (513)
++++. .++ +|+.|+++++.+++++..++..++.+++++.+..+++..+.+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 567 8899999999999999999887776653333322222235567889999999999999999999999999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042512 296 ILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVR 375 (513)
Q Consensus 296 ~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (513)
+.+++.+++ +++++|+++.++.++...+..+++++..|.+++++++||.++.++..++++++.++++++..+++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHH
Q 042512 376 NIWASMFTQDAEIIALTSMVLPII 399 (513)
Q Consensus 376 ~~i~~l~~~~~~~~~~~~~~l~i~ 399 (513)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.1e-34 Score=289.72 Aligned_cols=405 Identities=11% Similarity=-0.012 Sum_probs=344.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHH
Q 042512 53 IANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTL 131 (513)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 131 (513)
++|.+.+...+.++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788899999999999999999999999 99999999999999988775566888999989999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 042512 132 QRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAI 210 (513)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 210 (513)
++++.+.+..+++++++ +.+.+|+...+..+++. ..++++..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 88888888877766642 34555666666677788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 042512 211 ILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWW 290 (513)
Q Consensus 211 ~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 290 (513)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...+++.+++..+.++.++ +++++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444443 249999999999999998887766665544322111122 45688899999999999999999999
Q ss_pred HHHHHHHHHH-cCCchhHHHHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 042512 291 WYEIMILLCG-LLLNPQATVASMGILIQTTSL-IYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTAL 368 (513)
Q Consensus 291 ~~~~~~~~~~-~~~~g~~~~a~~~~~~~i~~~-~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (513)
....++.+++ .+| ++++|+|+.+.|+.+. ...+..+++++..|.+++. +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 665 4999999999999774 5788899999999999985 6788899999999999999999999
Q ss_pred HHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 369 VFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYS 448 (513)
Q Consensus 369 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 448 (513)
+.+++++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++......+... ++++++++++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 999999999999999865 667889999999999999888888877778888877777776655 7899999998887
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 449 GFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 449 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
+|..|+++++.+++.+..++..+...+
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988866554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.1e-29 Score=249.01 Aligned_cols=386 Identities=14% Similarity=0.078 Sum_probs=337.2
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhCcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 042512 81 LGDL-ALAGGSLAIGFGNITGYSLL-SGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILL 157 (513)
Q Consensus 81 lg~~-~~~~~~~a~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (513)
+|.+ +..+|..+..+..++...+. .+++++..|..++.. ++++++.++..++.+.+...+++.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 66789999999998854454 568999999999998 8899999999999998888888888877 888888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc---cchhH
Q 042512 158 FC--GQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLG---LKGIA 232 (513)
Q Consensus 158 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 232 (513)
.+ +.+++..+.+..++++.++..++..+..++.+++++++|+..+....+..++..++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 77 457788899999999999999999999999999999999999999888877766554443333 356 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 042512 233 LSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASM 312 (513)
Q Consensus 233 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 312 (513)
+|.+++.++..++.....+|.+.+.+... ..+.+..|++++...|..+.....++...+++.+.+.+++ ..++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF---DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHH
Confidence 99999999999888777765543311111 2345568899999999999999999999999999999976 889999
Q ss_pred HHHHHHhHHHHHh-HHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC----cHH
Q 042512 313 GILIQTTSLIYIF-PSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQ----DAE 387 (513)
Q Consensus 313 ~~~~~i~~~~~~i-~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 387 (513)
+.+.++.++...+ ..+++++..|.++++..++|.++.++..++.++..+.+.+|++++++.+++++++++.. |+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 9999999997755 57999999999999999999999999999999999999999999999999999998852 566
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 042512 388 IIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCV 467 (513)
Q Consensus 388 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~ 467 (513)
..+....++.+++++.++.+++.++...+++.||+|.+.+.++++. ++++.+.+.+... +|..|.++|+.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999988 8999999888776 899999999999999999
Q ss_pred HHHHHHHHhc
Q 042512 468 VTMLFVVART 477 (513)
Q Consensus 468 ~~~~~~~~~~ 477 (513)
++.++.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9998888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2.3e-27 Score=232.36 Aligned_cols=421 Identities=13% Similarity=0.056 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChh-HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhCcCChhH
Q 042512 50 ARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDL-ALAGGSLAIGFGNITGYSLLSG-LAMGMETICGQAFGAARYKL 126 (513)
Q Consensus 50 ~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~-~~~~~~~a~~~~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~ 126 (513)
...++|.+.-.....+++.+.+++...+++. +|++ ...++.++..+.+++-..+..| ++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 4567888888888999999999999999999 9996 6679999999999885555554 79999999999987777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 127 LGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFC-GQ--EQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
.++..+....+...+.+.++++ .++.+++.... +. +++....+....+++.+.+++.++.....+.+++.+|+..+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7877777776777777777776 66666666344 32 23333357888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHH
Q 042512 203 TFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSC 282 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 282 (513)
.+..+..++.-+.....+.........+.++++.++-+++.++.+..++|.+...+... ..+.+..|++.+.-.|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~---~~~~~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF---GFKDPGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC---CCCchhHHHHHHHHHHHH
Confidence 99998777776655554444322236788999999999999999888877664333222 234477899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHH-hHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042512 283 ISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYI-FPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSF 361 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 361 (513)
+.....+++..+|+.+.+.+.+ ..++.++.+.++.++... +..++++++.|.++++..++|.++.++..++++++++
T Consensus 243 l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 889999999999999884 5599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q 042512 362 MLGFTALVFTAIVRNIWASMFTQ----DAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVG 437 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 437 (513)
++++|.++++..++++++.++.. +++......+.+..+.++.++..+..++...+++.+|+|.++++.+++. +++
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHH
Confidence 99999999999999999998843 4555778899999999999999999999999999999999999999988 899
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 042512 438 MPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTD 478 (513)
Q Consensus 438 i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (513)
+.+++.+... +|..|.+++..++.++...+.++..+|+.
T Consensus 400 ~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 400 ILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999766655 89999999999999888888888777753
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=7.9e-28 Score=246.06 Aligned_cols=398 Identities=11% Similarity=0.061 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHH
Q 042512 50 ARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLG 128 (513)
Q Consensus 50 ~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 128 (513)
.++..+.+.+..++++...+.+++..++++| +||+++|.++.++.+.+++......|++.+.. |. +|. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CH
Confidence 4678899999999999999999999999999 99999999999999999886677778877653 21 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 042512 129 LTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCAT 207 (513)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 207 (513)
+..++.+.+.+..++.+.++ +.+.+++..++ ++++. ...+++..+..++..+.....+.+++.+|.+......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34456666777777766665 44454554444 34432 34667777788888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHH
Q 042512 208 FAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCL 287 (513)
Q Consensus 208 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 287 (513)
...+...++.+.+.. .++|+.+.+++.+++..+..+...+.. +++. ++. + +.+++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~-~~~---~-~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIY-RPA---L-HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccC-Ccc---c-eecHHHHHHHHhhhHHHHHHHHH
Confidence 888887777766655 378999999999999888776543322 2221 111 1 23456789999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHH-hHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 042512 288 EWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYI-FPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFT 366 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (513)
..+....|+.+++.+. |++++|.|+.+.++.+.... +...++++..|..++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 57999999999999887554 4456788999999885 678899999999999999999999
Q ss_pred HHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 367 ALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSF 446 (513)
Q Consensus 367 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 446 (513)
+.+++..++++++.++.+++ +..+...++++++..++..+.......+++.||+|..++.+++.. ++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence 99999999999999988765 788999999999999999999999999999999999999988876 677787776665
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 447 YSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 447 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
. +|..|+++++.+++.+...+..+..+|
T Consensus 377 ~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 L--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred h--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 799999999999999988888877644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=9.5e-26 Score=230.19 Aligned_cols=392 Identities=18% Similarity=0.148 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhH
Q 042512 48 KEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKL 126 (513)
Q Consensus 48 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 126 (513)
...+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++..++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 357889999999999999999999999999999 9999999999999999999777789999999999999866555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHH
Q 042512 127 LGLT-LQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFC 205 (513)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (513)
.... ...........+.+......+..+. .+.....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI----------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5544 4444444444444433332222222 1223455677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHH
Q 042512 206 ATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISV 285 (513)
Q Consensus 206 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 285 (513)
.+.. ..-....+.+.. .......++.+.+..........+..++++.... ... +..++..|+++++++|..+..
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHH
Confidence 4444 111121222221 3455666777777777666655555322221111 111 224788999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 042512 286 CLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGF 365 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (513)
....+....|+++++++. |++++|.|+.+.++......+..+++.+..|.+++.+.+++.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 042512 366 TALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLS 445 (513)
Q Consensus 366 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 445 (513)
|..+++..+++++..++.+++ +..+...+.++++..++.++.......+++.|+++...+.+.++. +.++.+++.+.
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li 382 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI 382 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH
Confidence 999999999999999998765 555999999999999999999999999999999999999999988 78888888887
Q ss_pred HhcCCCcchHHHHHHH
Q 042512 446 FYSGFDFEGLWCGLLA 461 (513)
Q Consensus 446 ~~~~~g~~g~~~a~~~ 461 (513)
+. +|..|++.++..
T Consensus 383 ~~--~g~~g~~~a~~~ 396 (480)
T COG2244 383 PR--FGLIGAAIATAS 396 (480)
T ss_pred Hh--hhhhhHHHHHHH
Confidence 76 899999999833
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=7e-21 Score=190.37 Aligned_cols=210 Identities=24% Similarity=0.220 Sum_probs=201.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 042512 267 CFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCP 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~ 346 (513)
.++..|+++++++|..+.++.......+|+.+++++++ +++|+-+++.++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 45678999999999999999999999999999999975 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhH
Q 042512 347 KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGA 426 (513)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (513)
+++++..+.++.++++++++..+..+++++++..++..++|+.+.+.+|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhccH
Q 042512 427 NINLGCFYLVGMPVAVWLSFY-SG-FDFEGLWCGLLAAQGSCVVTMLFVVARTDW 479 (513)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.++++. +.|+.+++++++. .+ +|+.|+++|+.+++.+..++..++++|++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999998 8999999999988 45 999999999999999999999988887653
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=6.8e-21 Score=190.42 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChH
Q 042512 268 FKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~ 347 (513)
++..|++++.++|..++++...+...+|+.++++++ |++++|+.+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 455789999999999999999999999999999996 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHH
Q 042512 348 KAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGAN 427 (513)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 427 (513)
++++..+.++.++++++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 428 INLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 428 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
.++++. ++++++.+++++..++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 889999999988878999999999999999988877666554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=1.1e-20 Score=190.67 Aligned_cols=208 Identities=17% Similarity=0.102 Sum_probs=190.2
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCC
Q 042512 266 ECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANC 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~ 345 (513)
++++..|++++.++|.+++++...+...+|+.+++++++ +++|+++++.++..+...+..+++++..+.++|++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467789999999999999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchh
Q 042512 346 PKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLG 425 (513)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 425 (513)
++++++..+.+..+.++++++..+.++ +.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877665 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 426 ANINLGCFYLVGMPVAVWLSFY----SGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 426 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
++.++++. +++++++++++.. +++|+.|+++|+.+++.+..++..++++++
T Consensus 161 ~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 161 MVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 7899999887753 258999999999999888776665555543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=2.1e-20 Score=188.75 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 042512 267 CFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCP 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~ 346 (513)
+-+..|+++++++|.+++++.......+|+.+++++|+ +++|+++++.++..+...+..+++++..+.+++++|+||+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34558999999999999999999999999999999976 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC--CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCch
Q 042512 347 KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFT--QDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKL 424 (513)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 424 (513)
+++++..+.++.++++++++.+++.+++++++..++. .|+|+.+.+.+|+++..++.++..+.....+++++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 425 GANINLGCFYLVGMPVAVWLSFY----SGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
++++++++. ++++++.+.++.. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 182 ~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999866 8899999888764 36899999999999999988877655543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=2.5e-20 Score=187.84 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 042512 267 CFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCP 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~ 346 (513)
+++..|++++.++|..++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 3456799999999999999999999999999999973 348999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhH
Q 042512 347 KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGA 426 (513)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (513)
+++++..+.++.++++++++++++.+++++++..+++.|+++.+.+.+|+++..++.++..+......++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 427 NINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
..++.+. ++++++.++++..+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887 8999999999887789999999999999999988877665543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=1.3e-19 Score=183.47 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=195.1
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCC
Q 042512 265 LECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGAN 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~ 344 (513)
+..++.+|+++++++|..++++...+...+|+.+++++++ +++++++++.++..+...+..+++.+..|.+++++|++
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456779999999999999999999999999999999975 89999999999988888888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCch
Q 042512 345 CPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKL 424 (513)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 424 (513)
|++++++..+.++.+.++++++.+++++.+++++..+++.|+++.+.+.+++++..++.++..+.....+++++.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 042512 425 GANINLGCFYLVGMPVAVWLSFY----SGFDFEGLWCGLLAAQGSCVVTMLFVVARTD 478 (513)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 478 (513)
+++.++++. ++++++.++++.. +++|+.|+++++.+++.+..++..++.+|++
T Consensus 163 ~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 163 TMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999987 7899999888743 4589999999999999999998887776543
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.7e-16 Score=149.47 Aligned_cols=271 Identities=20% Similarity=0.230 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHH
Q 042512 53 IANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTL 131 (513)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 131 (513)
++|.+.....++++..+.+++..++++| +|++++|.++...++.+++......|++.+..+.+++...+ +++.+++.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3678889999999999999999999999 99999999999999999886667899999999999986422 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 042512 132 QRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAII 211 (513)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 211 (513)
........+.++......... ..+..++ .. ..+........++........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNPS-LS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444333332221 2333332 21 112222222225677888899999999999999999999988
Q ss_pred HHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 042512 212 LHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWW 291 (513)
Q Consensus 212 ~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 291 (513)
...++..+++.. +.+..+..++..++..+..++..++.+|+.+ .+++..+++..|++++++.|..++.+...+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666654 4458889999999999888887777665432 1122344788999999999999999999999
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhh
Q 042512 292 YEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNE 340 (513)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~ 340 (513)
...|..+++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 689999999999999999999999999999999875
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=5e-17 Score=167.14 Aligned_cols=204 Identities=18% Similarity=0.091 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHH
Q 042512 48 KEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLL 127 (513)
Q Consensus 48 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 127 (513)
+..|++++.++|..++++...+...+|+.+.+.+|++++++|+.+..+..+....+..+++++..|.++++.|++|+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999998855599999999999999988764456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 128 GLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQ----EQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
++..+.+......++++.+++ ..++++++.++.+ ++|..+.+..++++.+++.++..+.....+.+++.||+|.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 999999999999999998877 7888899887755 45778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042512 203 TFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMIS 253 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~ 253 (513)
++.++...++|++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988764 8999999999999999998887676544
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=1.5e-16 Score=155.23 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 042512 280 PSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLS 359 (513)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 359 (513)
|.+++++...+...+|+.+++++++ +++++|+.+.++..+...+..+++++..|.+++++|++|++++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788899999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q 042512 360 SFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMP 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 439 (513)
..+++++.+++.+++++++..+++.|++..+.+..+++++++..++.++.....+++++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999887 78888
Q ss_pred HHHHHHH-hcC-CCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 440 VAVWLSF-YSG-FDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 440 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
..+.+.+ ..+ +|+.|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888776 555 679999999999999988888776665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=2.7e-18 Score=148.17 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 042512 280 PSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLS 359 (513)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 359 (513)
|.++++++..+.+.+++.+++++++ +++++++++.++.++...+..+++++..+.+++++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 8899999999999999999999976 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q 042512 360 SFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMP 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 439 (513)
+.+++++.+++++++++++..+++.|+|+.+.+.+++++..+..++..+.....+++++.||++..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 042512 440 VAVW 443 (513)
Q Consensus 440 ~~~~ 443 (513)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=4.7e-15 Score=148.63 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHH
Q 042512 48 KEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLL 127 (513)
Q Consensus 48 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 127 (513)
+..|++++...|.+++....++...+|+.+.+++++..+++++.++.+.++....+..++++...|.+++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45899999999999999999999999999999999999999999999999986788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 128 GLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCG----QEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
++.+++.+...+.+.++.++. ..+++|++..+. -++|..+.....++++++++|+..+..++...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999877 889999987764 256778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 203 TFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISG 254 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~ 254 (513)
+..++...++|+++++++... +|..|.++++.++..+..+...++++|+.
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999888875 89999999999999999999877776554
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.70 E-value=1.7e-13 Score=135.22 Aligned_cols=232 Identities=15% Similarity=0.086 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHH
Q 042512 48 KEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLL 127 (513)
Q Consensus 48 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 127 (513)
...|++.+...|..++..+.++..++|+.+.+.+.+...+.+..+..++++..-.+..++++...|.+||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 47899999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhH
Q 042512 128 GLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQ----EQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPL 202 (513)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (513)
++..+.++.++++++++.++. ..+++|+...+.. +++....+...++...+++++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999987 8899999976632 56667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHH
Q 042512 203 TFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSC 282 (513)
Q Consensus 203 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 282 (513)
+++.++..++|+.++..+... +|..|.++++.++.+++..++++..+|+..... ...+.... ..|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HHHHHHHHH
Confidence 999999999999999766664 788899999999999999888776665543211 22344344 555555555
Q ss_pred HHHHHH
Q 042512 283 ISVCLE 288 (513)
Q Consensus 283 ~~~~~~ 288 (513)
++....
T Consensus 460 i~~~~~ 465 (518)
T COG0728 460 IMAAAL 465 (518)
T ss_pred HHHHHH
Confidence 544433
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=5.6e-15 Score=151.42 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChh---------HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDL---------ALAGG-SLAIGFGNITGYSLLSGLAMGMETI 114 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~---------~~~~~-~~a~~~~~~~~~~~~~gl~~~~~~~ 114 (513)
+++..|++++.++|.+++++...+...+|+.++++ +++. .+|.+ +.+.++..+. ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998 6432 22322 3455666666 57788999999999
Q ss_pred HHhhhCcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042512 115 CGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYL 193 (513)
Q Consensus 115 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 193 (513)
++++.|++|+++.++..++...+...++++..+. ..++++++.++..++ ++..+++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876 778888888776543 35678999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 194 RTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMI 252 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 252 (513)
++.||+|..++.++...++|++++++++...++|+.|+++++++++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988874335899999999999999999888776654
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=2.5e-17 Score=142.07 Aligned_cols=160 Identities=26% Similarity=0.389 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHHHHHHHHH
Q 042512 59 PMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLL 138 (513)
Q Consensus 59 p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 138 (513)
|.++++++..+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.++|++|++|+++.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999988 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH-HHHHHH
Q 042512 139 LLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAI-ILHIPI 216 (513)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 216 (513)
..+++++.++ ..+.+++..+++.++++.+.+..|+++..+..++..+.....+++++.||++..++.++... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88888999999999999999999999999999999999999999999999999999999999 899988
Q ss_pred HHH
Q 042512 217 NYL 219 (513)
Q Consensus 217 ~~~ 219 (513)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=1.9e-13 Score=140.09 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK 125 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 125 (513)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.++....+...++....|.+++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4568999999999999999999999999999999 99999999999999988764556666777888988886 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHH
Q 042512 126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTF 204 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (513)
+.++.+.+...+...+++++.+. ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998876 788888888776654 667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 205 CATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMI 252 (513)
Q Consensus 205 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 252 (513)
.+++..+++++..+++.. .+|+.|+++++++++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888887776665554 4799999999999999988887666644
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=6.6e-13 Score=123.39 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042512 69 SRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAF 147 (513)
Q Consensus 69 l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (513)
..+++..++++| +|++++|.++....+..+.......|+.....+ ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999 999999999999999998855557777766554 22455666666666666555544444433
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 042512 148 LWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLG 227 (513)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 227 (513)
+ ...+..++ .+++. ..++....+..+.........+.+++.+|.+......+...+....+..++.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11222233 33322 23455666777888899999999999999999999999988888555544444 2458
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhH
Q 042512 228 LKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQA 307 (513)
Q Consensus 228 ~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 307 (513)
..+..++..++.++..++.....+ ++ .+. +++.+..| .++.+.|..+..+........|.++++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR-RK-LRL------SFKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cc-cCC------CchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 888889988888888776644322 11 111 11223334 789999999999999999999999999944 469
Q ss_pred HHHHHHHHHHHhHHHH-HhHHHHHHHHHHHHHh
Q 042512 308 TVASMGILIQTTSLIY-IFPSSLSFGVSTRVGN 339 (513)
Q Consensus 308 ~~a~~~~~~~i~~~~~-~i~~~l~~~~~~~~~~ 339 (513)
++|.|+++.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 8999999999999886
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=2.4e-13 Score=136.13 Aligned_cols=199 Identities=8% Similarity=-0.007 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCCh
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARY 124 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 124 (513)
+++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35678999999999999999999999999999986 99999999999999977543688899999999999995 567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHH
Q 042512 125 KLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLT 203 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (513)
++.++..+........++++..++ .+++++++.++.+++ ++++.+++++++++..+......+...+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888888887776 788999999887765 44567788888888888888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 042512 204 FCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIM 251 (513)
Q Consensus 204 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~ 251 (513)
...+...+++++++++++.. +|..|+++++.+++++......+...
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998875 89999999999999999987765544
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.9e-12 Score=132.28 Aligned_cols=187 Identities=23% Similarity=0.253 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCCh
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARY 124 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 124 (513)
.++..|++++.++|.....+...+.+.+|+.++++ +|++++|.|+.++.+.... ..+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 36789999999999999999999999999999999 9999999999888888877 788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHH
Q 042512 125 KLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLT 203 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (513)
++.++..++.+.....++.+..++ ..+++|++..+.+++ +..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998887 888889988776665 23367788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHH
Q 042512 204 FCATFAIILHIPINYLLVSVLNLGLKGIALSSVWT 238 (513)
Q Consensus 204 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~ 238 (513)
....+..++|.+++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999874 8899999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.37 E-value=3e-09 Score=107.56 Aligned_cols=420 Identities=13% Similarity=0.024 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHH
Q 042512 54 ANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGN-ITGYSLLSGLAMGMETICGQAFGAARYKLLGLTL 131 (513)
Q Consensus 54 ~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~-~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 131 (513)
.+.+.-+++.+++..+.+++-+-++-| ++|+.+|..++=..+.. ......-.++-.+..+.-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 456677888999999999998888888 99999998755444432 2223455577666554333321122233333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH----HHHHcCCC-HH---HHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHcC
Q 042512 132 QRTILLLLLSSIPIAFLWL--NMKT----ILLFCGQE-QD---IAHEAQIYLLYSLPDLIALSFLHP----LRIYLRTQS 197 (513)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~~~~ 197 (513)
+....+..+++++++.+.+ ...| ...+.... ++ ..+.....+.+...+.....+... .+..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3333344444433322211 1111 11111111 11 112222223333333333333333 344455555
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcc-----ch-hHHHHHHHHHHHHHHHHHHHHHhc-cccccc----CCCCH
Q 042512 198 ITLPLTFCATFAIILHIPINYLLVSV-LNLGL-----KG-IALSSVWTNFNLVISLILYIMISG-VHEKTW----GGISL 265 (513)
Q Consensus 198 ~~~~~~~~~~~~~~~~i~~~~~li~~-~~~g~-----~g-~a~a~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~ 265 (513)
|.+.-........+++..+....... .+++. .+ +.++..++++...+.......... ...+.+ .+...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554433333211 11111 11 234455555554443222111111 111111 11101
Q ss_pred ---HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHhHHH-HHhHHHHHHHHHHHHHh
Q 042512 266 ---ECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGL--LLNPQATVASMGILIQTTSLI-YIFPSSLSFGVSTRVGN 339 (513)
Q Consensus 266 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~i~~~~-~~i~~~l~~~~~~~~~~ 339 (513)
.....-++.++........++.-.+....|.+++.. +. +.++-|.|++++++-++. -.+...+-.......++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011134688899999999999999999999999888 76 479999999999997774 44557788888888888
Q ss_pred hhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHH
Q 042512 340 ELGANCP---------KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQT 410 (513)
Q Consensus 340 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 410 (513)
...+++. ++..+.....+++...+++.+..+-..+++.++.++.++.-....+...+++++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7765432 4566777888888888888888888888888888887644333347889999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHH---HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 411 TGCGVLRGTARPKLGANINL---GCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 411 ~~~~~l~~~g~~~~~~~~~~---~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
+...+.++..+.+.....+- +.. ++.+..++.+... ++|..|..+|.++.+.++.+....+++|
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988765544433 222 4556677777775 6899999999999999999999877665
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.32 E-value=2e-10 Score=114.46 Aligned_cols=206 Identities=14% Similarity=0.072 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHhhhcCCCh
Q 042512 268 FKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSL-IYIFPSSLSFGVSTRVGNELGANCP 346 (513)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~i~~~l~~~~~~~~~~~~g~~~~ 346 (513)
....|++.+++.|..+..........++..+.+++|+ .++++.+++.+..+. .+.+..++..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 6788999999999999999999999999999999986 799999999888776 5567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhH
Q 042512 347 KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGA 426 (513)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (513)
+.......++........++.+ .++.+.+++...+.+|+++...+..+.++.....+-......+...+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999998888888886 567777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 427 NINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
++..+.. ++++++.+++.+..++|..|++++..+++.+.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999988 8999999999999999999999999999999988888776554
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=4e-07 Score=86.18 Aligned_cols=416 Identities=12% Similarity=0.018 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCC---h
Q 042512 49 EARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAAR---Y 124 (513)
Q Consensus 49 ~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~---~ 124 (513)
....-.+.+.-.+..+++..+.++.-..++-| ++++.+|..++-..+.+- ...-++.=..+......|..+ .
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s----TiLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS----TILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH----HHHHhhHHHHHHHhccCCCCCCccH
Confidence 44556677777888888888888887777767 999999988766655432 222222222233333333333 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHH
Q 042512 125 KLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQD-IAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLT 203 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (513)
++..+..+.+.-+...+..++.-+++ .+... .++. ..+.-...+.+...+...-.+...+.-..|...+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl---~~~~s--~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWL---GFLSS--SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH---HHhhc--cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 35555555555555555544433311 11110 0110 111112222233333333333444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCccchhHHHHHHHHHHHHHHHHH-HHHHhccccc-----c----cCCC-CHH-hHH
Q 042512 204 FCATFAIILHIPINYLLVSVL--NLGLKGIALSSVWTNFNLVISLIL-YIMISGVHEK-----T----WGGI-SLE-CFK 269 (513)
Q Consensus 204 ~~~~~~~~~~i~~~~~li~~~--~~g~~g~a~a~~~~~~~~~~~~~~-~~~~~~~~~~-----~----~~~~-~~~-~~~ 269 (513)
...-....+.-++.+...+.. .+++..-|+|.+.....-.+.+.+ |+..++..+. + .++. .++ ..-
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 555555555533333333321 233444455555444444442223 3333331100 0 0000 010 001
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHhHH-HHHhHHHHHHHHHHHHHhhhcCCChH
Q 042512 270 EWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLN-PQATVASMGILIQTTSL-IYIFPSSLSFGVSTRVGNELGANCPK 347 (513)
Q Consensus 270 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~i~~~-~~~i~~~l~~~~~~~~~~~~g~~~~~ 347 (513)
.-++..+.-.....+.+.-.+...-+.++++.... .-.+-|.|.++++.-++ .-++...+-.......++...+++.+
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 23355566666666666677777777777764322 12467788888888555 44455777777777777777666555
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCch
Q 042512 348 KAK---LAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKL 424 (513)
Q Consensus 348 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 424 (513)
+.+ ......+++...+++....+-..++..++.++++++-....+...++++|+..++.+++.+..++..+.++.+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 544 45566667777777666666667777888888765432334678999999999999999999999999887665
Q ss_pred hHH---HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 425 GAN---INLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 425 ~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
... ..++.. ++.+...+++... +|..|..+|.++.+.++.+....++++
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 223333 5667888888887 899999999999999998887665554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.05 E-value=1.4e-06 Score=79.19 Aligned_cols=262 Identities=13% Similarity=0.029 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCCh
Q 042512 48 KEARRIANIALPMILTGLLLYSRSMISMLFLGR-L-GD-LALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARY 124 (513)
Q Consensus 48 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-l-g~-~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 124 (513)
.+++++.++-.|+.++.++..+...+-+.-++| - .+ +.+++|+++.++.-++ ......+-.....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 479999999999999999999999999999987 3 22 3589999999998776 566665555444333 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhh
Q 042512 125 KLLGLTLQRTILLLLLSSIPIAFL-WL-NMKTIL-LFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLP 201 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (513)
++.+..... ...+.+.+....++ +- +...++ ..++.++++.+.++..+.++.+.-++..+...+++++.-.+++..
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 322222222 22222222221222 22 222333 556889999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-C--CccchhHHHHHHHHHH---HHHHHHHHHHHhcccccccCCCCHHhHHHHHHHH
Q 042512 202 LTFCATFAIILHIPINYLLVSVL-N--LGLKGIALSSVWTNFN---LVISLILYIMISGVHEKTWGGISLECFKEWRSLL 275 (513)
Q Consensus 202 ~~~~~~~~~~~~i~~~~~li~~~-~--~g~~g~a~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
....++......+++..+++..- + .+..--.++...+..+ ..... +|..-+.+ ........+.+...+++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LG-y~~~i~~~-~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLG-YYQSIHDI-IPQLSGLEKGDSATLQRML 238 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh-ccccCCcccCCChhHHHHH
Confidence 77777776666666555555321 1 1111111222222222 11222 22111111 1111222244567789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHc-CCchh----HHHHHHHHHHHHh
Q 042512 276 NLAIPSCISVCLEWWWYEIMILLCGL-LLNPQ----ATVASMGILIQTT 319 (513)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~----~~~a~~~~~~~i~ 319 (513)
++.+|.+.......+.-.+.+.++++ ++ |. ++++...+.+.+.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~-gs~a~~~avavl~~~ypvg 286 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLS-GSQAATEAVAVLTATYPVG 286 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CcccchhhhhhhccccCCC
Confidence 99999999999999999999999988 54 33 5666655555543
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.43 E-value=3e-05 Score=65.10 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=72.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 173 LLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMI 252 (513)
Q Consensus 173 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 252 (513)
+++++++.++..+....++.+++.||+|.....++++.++|++++++++. ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999976 4999999999999999999988777765
Q ss_pred hc
Q 042512 253 SG 254 (513)
Q Consensus 253 ~~ 254 (513)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 53
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.38 E-value=7.5e-05 Score=76.06 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCCh--
Q 042512 50 ARRIANIALPMILTGLLLYSRSMISMLFLGR---LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARY-- 124 (513)
Q Consensus 50 ~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~---lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 124 (513)
-+++++.+.....+.++..+.+--|.+++.. ...++-|.|+++..+-++..-.+...+.-..-...+|...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4688889999999999999999999999998 57789999999999999988888888999888888888765433
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 042512 125 -------KLLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQ 196 (513)
Q Consensus 125 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 196 (513)
++..+.+...+.+...+++++... ...++.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345667777788888888777665 666667777775543223344677888899999999999999999998
Q ss_pred CChhhHH---HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042512 197 SITLPLT---FCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMIS 253 (513)
Q Consensus 197 ~~~~~~~---~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~ 253 (513)
...+... ....+..++-+..+++++.. ++|..|..+|+.+...+-.+....+..+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765544 44445555666777877775 68999999999999999888887776543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.16 E-value=0.00042 Score=64.86 Aligned_cols=188 Identities=17% Similarity=0.150 Sum_probs=114.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHh-HHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 042512 276 NLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIF-PSSLSFGVSTRVGNELGANCPKKAKLAAI 354 (513)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i-~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ 354 (513)
|-+......+....+...+...++.+.. |+++.|.|+....+..+...+ ..++.++..-..++...+ .+..+....
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444555555555555555555555544 469999999999998887776 478888888777776432 233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 042512 355 IGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFY 434 (513)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 434 (513)
.......+..+.......+.. .+.. ++. ...+........++..........+++.++.+......+...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 433333333332222222222 3333 321 122222222222577788888999999999998888888876
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 042512 435 LVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVART 477 (513)
Q Consensus 435 ~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 477 (513)
+......+.+... ..+..+...+..++..+..++..+..+|.
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 23488888999999888888777776653
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.11 E-value=1.9e-05 Score=66.30 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 042512 396 LPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVA 475 (513)
Q Consensus 396 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 475 (513)
+++++++.++.++....+.++++.||+|..++.++++. ++++++++.+.+. +|..|+++|+.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988 8999999999766 99999999999999999999998888
Q ss_pred hc
Q 042512 476 RT 477 (513)
Q Consensus 476 ~~ 477 (513)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.95 E-value=0.0082 Score=55.21 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCC
Q 042512 267 CFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGL-LLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANC 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~ 345 (513)
.....++++++-+|..++.....+.-.+.+.-+++ ..+..+.+|+|+++..+.-++..+...+-++...++...
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~----- 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK----- 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----
Confidence 44567899999999999999999999888888876 343236799999999999999999988888777666432
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH-hhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCc
Q 042512 346 PKKAKLAAIIGLLSSFMLGFT-ALVFTAIVRNIW-ASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPK 423 (513)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 423 (513)
.+ -++........+.+..+. ..+..-.++..+ ..++.-|+++.+.+...+.++.+..+++++.....+++.=.+++.
T Consensus 81 rs-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RS-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 11 222222222222222222 112222333333 345566899999999999999999999999999999888667777
Q ss_pred hhHHHHHHHH
Q 042512 424 LGANINLGCF 433 (513)
Q Consensus 424 ~~~~~~~~~~ 433 (513)
.....++...
T Consensus 160 iV~~aSI~~v 169 (345)
T PF07260_consen 160 IVGSASIADV 169 (345)
T ss_pred EeehHHHHHH
Confidence 7777776654
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.94 E-value=0.0024 Score=58.97 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=106.6
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhHHHHHhH-HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042512 295 MILLCGLLLNPQATVASMGILIQTTSLIYIFP-SSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAI 373 (513)
Q Consensus 295 ~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~-~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (513)
...++++.. |+++.|.|+....+..+...+. .++.+...- ..+++.++.++..+.......+.++...++.
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA-- 78 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344444444 4599999999999988877764 455544433 2346666777776666655554444443332
Q ss_pred hhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 042512 374 VRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFE 453 (513)
Q Consensus 374 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 453 (513)
..+...+ ++++ ...++.+..+..++..+.......+++.+|.+......+... +........+... +.+..
T Consensus 79 --~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 149 (251)
T PF13440_consen 79 --ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLW 149 (251)
T ss_pred --HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHH
Confidence 2222233 3332 445566777788888999999999999999999999888876 3443333333332 23788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 042512 454 GLWCGLLAAQGSCVVTMLFVVA 475 (513)
Q Consensus 454 g~~~a~~~~~~~~~~~~~~~~~ 475 (513)
+..++..++..+..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888887776665433
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.0088 Score=57.60 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChhHH
Q 042512 51 RRIANIALPMILTGLLLYSRSMISMLFLGR---LGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLL 127 (513)
Q Consensus 51 ~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~---lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 127 (513)
++..+.......+.++-.+.+=-|.+++.. ++-++-|.|.++..+-++..-.+...+.-....+.+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 455566666677778888888889999883 66678889999988888887788888888888888888877766655
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHH
Q 042512 128 G---LTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLT 203 (513)
Q Consensus 128 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (513)
+ +++...+.+...+++..... ...+.+.+.+++++.=....+...+++.+..+|+.+++.+..++..+....+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 4 45555666666666555544 5556667777766433333345678899999999999999999998887654333
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 042512 204 ---FCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIM 251 (513)
Q Consensus 204 ---~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~ 251 (513)
....+.++.-.+++++++.. +|..|..+|.++...+-.+....+.+
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888875 67788888888777776666544443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.85 E-value=0.45 Score=45.11 Aligned_cols=322 Identities=12% Similarity=0.060 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHh
Q 042512 98 ITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSL 177 (513)
Q Consensus 98 ~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 177 (513)
++...++.|+....++.+|...=++|.+++..-+.....+....+..++.+.. ....+.... |=....
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~-----yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIV-----YKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHH-----HHHHHH
Confidence 34467788888899999998877777777655555554444444444432211 111122111 111223
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 042512 178 PDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHE 257 (513)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
......+..-....++.+.+|.+.....-.++.++.+.+..++-. .+..|..++..++..+.......+..|.-+.+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 334445555566788899999999999999999988888876654 68999999999999998888777776543321
Q ss_pred cccCCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH------HHHHHHHHhHHHHHhHH----
Q 042512 258 KTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVA------SMGILIQTTSLIYIFPS---- 327 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a------~~~~~~~i~~~~~~i~~---- 327 (513)
+. ..+. . -...+--....+..+...++.++|+.+.=.-++|.+..+ .|.++.-...+...|..
T Consensus 216 ~~-i~Fd---F---L~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 RR-IGFD---F---LLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred cc-ccee---h---hhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 11 1111 0 111122223344445556666666655433322111111 23333323333233322
Q ss_pred -HHHHHHHHHHHhhh----cCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHH
Q 042512 328 -SLSFGVSTRVGNEL----GAN-------CPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMV 395 (513)
Q Consensus 328 -~l~~~~~~~~~~~~----g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 395 (513)
.+-+...+.--+.+ |.+ +.++.....+..+.-.+-+-...++.++.+++.+...+.-++ ...+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 23333333322222 222 222333344444444455666777888899999998886543 24455
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 042512 396 LPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSF 446 (513)
Q Consensus 396 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 446 (513)
+++-.++..........-.+.--..+-+..+..+..-. ..|-.+.++...
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~ 414 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHH
Confidence 55555555554444444334333444454444443332 455555555443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.48 E-value=32 Score=33.18 Aligned_cols=136 Identities=13% Similarity=-0.008 Sum_probs=90.5
Q ss_pred HhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q 042512 324 IFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCE 403 (513)
Q Consensus 324 ~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 403 (513)
.+..+++-...-.+++.+=++|.+++...+.-+..+....+...+..+. ...++. ...+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~-----si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQY-----SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCch-----hHHHHHHHHHHH
Confidence 3446677777777888887888888888887777666555554443111 112222 112222234444
Q ss_pred hhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 042512 404 LGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVAR 476 (513)
Q Consensus 404 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 476 (513)
...+...+...++.+.+|.+.......++. ++.+.++.++-. .+.+|..++..++......+...+..|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555666777888889999998888887776 666677666654 589999999999988877766665544
No 47
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=75.77 E-value=87 Score=31.02 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhh--cC-hhHHHHHHHHHHHH
Q 042512 40 STHLFLAIKEARRIANIALPMILTGLLLYSRSM--ISMLFLGR--LG-DLALAGGSLAIGFG 96 (513)
Q Consensus 40 ~~~~~~~~~~~~~i~~~~~p~~~~~~~~~l~~~--~~~~~i~~--lg-~~~~~~~~~a~~~~ 96 (513)
+.++++..+..|.++++.+|+.+..+.+.+... .++..--. .. .+.+..|++.+++-
T Consensus 232 ~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~G 293 (402)
T PF02487_consen 232 KLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLG 293 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence 345566777888999999999999999987743 34433211 12 23555566555543
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=63.79 E-value=1.6e+02 Score=29.15 Aligned_cols=41 Identities=12% Similarity=-0.057 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC
Q 042512 344 NCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQ 384 (513)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 384 (513)
.+.++.+++.+++.+.+.+......+++....-|+...-.+
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~ 128 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYG 128 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677999999999999999998888888888887764433
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=60.60 E-value=2e+02 Score=29.25 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChh
Q 042512 49 EARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDL 84 (513)
Q Consensus 49 ~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~ 84 (513)
..|+.+.++.+-+..++.....+.--..+... .|-.
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis 46 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLS 46 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCc
Confidence 57888899999888888888777777777766 5533
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=56.75 E-value=63 Score=23.71 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 042512 329 LSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFT 366 (513)
Q Consensus 329 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (513)
++...+..+-+.+.+||++++++..+++.+++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44444556677888999999999999998887644443
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=42.66 E-value=2.8e+02 Score=25.70 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 042512 322 IYIFPSSLSFGVSTRVGNELGANCPKKAKLAAI 354 (513)
Q Consensus 322 ~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ 354 (513)
...+...++.......=++..++|.++.++...
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334445566666667777777889888876543
No 52
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=40.04 E-value=3.6e+02 Score=26.14 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042512 346 PKKAKLAAIIGLLSSFMLGFTALVFT 371 (513)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (513)
.++..+..++.++......+|.....
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~ 143 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFIS 143 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666664433
No 53
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.83 E-value=4.5e+02 Score=27.02 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHH
Q 042512 185 FLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVL----NLGLKGIALSSVWTNFNLVISL 246 (513)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~~~~~~~~~~~ 246 (513)
...+++..++..++.....+......+-++...++-.... +.+..|--|..++.-.++....
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence 3445667777777777777766666666665554333211 1344555555555555554444
No 54
>TIGR00893 2A0114 d-galactonate transporter.
Probab=38.18 E-value=3.7e+02 Score=25.75 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHHHH
Q 042512 199 TLPLTFCATFAIILHIP 215 (513)
Q Consensus 199 ~~~~~~~~~~~~~~~i~ 215 (513)
.+.....+....+...+
T Consensus 346 g~~~~~~~~~~~~g~~~ 362 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIV 362 (399)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33334444444333333
No 55
>PF14184 YrvL: Regulatory protein YrvL
Probab=33.33 E-value=2.7e+02 Score=22.69 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcCCC-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 042512 134 TILLLLLSSIPIAFLWLNMKTILLFCGQE-QDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIIL 212 (513)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (513)
.....+.+..+.+........+++++|.+ +.......-.+....++.|+..+...+...+.-.+-++... ......+
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~i 84 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFII 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHHH
Confidence 33444444444444456666777888765 22333333344455667777777777666665553333333 2345667
Q ss_pred HHHHHHHHHhhcCCccchhHHHH
Q 042512 213 HIPINYLLVSVLNLGLKGIALSS 235 (513)
Q Consensus 213 ~i~~~~~li~~~~~g~~g~a~a~ 235 (513)
....++..++..+.=+.+..+.+
T Consensus 85 d~~~t~~~i~~aD~~m~sI~is~ 107 (132)
T PF14184_consen 85 DFLFTWITIYTADELMESISIST 107 (132)
T ss_pred HHHHHHHHHHHHHHHhcceeeCc
Confidence 77777777765433333333333
No 56
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=32.41 E-value=5e+02 Score=25.60 Aligned_cols=14 Identities=14% Similarity=-0.216 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHHH
Q 042512 345 CPKKAKLAAIIGLL 358 (513)
Q Consensus 345 ~~~~~~~~~~~~~~ 358 (513)
|.++..+..++.+.
T Consensus 73 Dlr~i~~~g~~~l~ 86 (378)
T PF05684_consen 73 DLRRILRLGGRLLL 86 (378)
T ss_pred cHHHHHHhhHHHHH
Confidence 55555555555443
No 57
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=31.01 E-value=3.7e+02 Score=23.62 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChh--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 042512 46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDL--ALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAF 119 (513)
Q Consensus 46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~--~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~ 119 (513)
..+.++...+.......-........++-..+.+. ..++ ...-......+...+...+...+.++....+.+.+
T Consensus 106 ~~~~~~~~~~~~~~l~~ia~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~lva~~i~t~~~~~~~~~i 182 (212)
T PF06687_consen 106 ALDYYNNLLKAMFILYPIAIVFTFLALILSGLLAFFSRPRNTILSLVASILSLLAFIFLLVAAIIATALFVIIRNAI 182 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665555555555555333443 2222 33333333334333334444445555444444443
No 58
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=30.27 E-value=6.4e+02 Score=26.17 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-hhHHHHHHHHHHHHHHH
Q 042512 53 IANIALPMILTGLLLYSRSMISMLFLGRL-G-DLALAGGSLAIGFGNIT 99 (513)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~~~~~~i~~l-g-~~~~~~~~~a~~~~~~~ 99 (513)
..++..-..++++...+....-.+++.++ + +..+|....+..+..++
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444556677777888887777777773 3 33556555555554433
No 59
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=30.18 E-value=5.8e+02 Score=25.68 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 042512 307 ATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTA 367 (513)
Q Consensus 307 ~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (513)
--.+.|+....+..+ ...|.+++..-+.++.++-+.....=+.+...+..+
T Consensus 38 l~~siygl~~~~~~~----------~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~ 88 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAI----------LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCAL 88 (432)
T ss_pred HHHHHHHHHHHHHHH----------HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 456666666665444 446788998877776666555555445554444443
No 60
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.03 E-value=2.6e+02 Score=28.50 Aligned_cols=106 Identities=13% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHH--HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 042512 392 TSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCF--YLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVT 469 (513)
Q Consensus 392 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 469 (513)
....+.-++.+..+-+...+...+.--..+.+.....+.... -++..|+.=.+.-. .+|...+.+.......+..++
T Consensus 133 ~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~ 211 (466)
T KOG2532|consen 133 VLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFIL 211 (466)
T ss_pred HHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHH
Confidence 333444444455555555555544444455554444443221 13444544444432 479999998888887777777
Q ss_pred HHHHHHhccHHHHHHHHHhhhcCCCCCCc
Q 042512 470 MLFVVARTDWDLQAQRAKELTGNATIDDE 498 (513)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (513)
.+++.+-..-+++....+|++..++.+.+
T Consensus 212 w~~~~~d~P~~h~~is~~El~~I~~~k~~ 240 (466)
T KOG2532|consen 212 WFLFYSDSPSKHPNISEKELKYIEKGKSE 240 (466)
T ss_pred HHHHhcCCcccCCCCCHHHHHHHHhcccc
Confidence 76666544444333334444444444333
No 61
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.63 E-value=75 Score=23.17 Aligned_cols=10 Identities=0% Similarity=0.026 Sum_probs=0.7
Q ss_pred HhccHHHHHH
Q 042512 475 ARTDWDLQAQ 484 (513)
Q Consensus 475 ~~~~~~~~~~ 484 (513)
+|.+.+++..
T Consensus 31 rk~~rqrkId 40 (81)
T PF00558_consen 31 RKIKRQRKID 40 (81)
T ss_dssp --------CH
T ss_pred HHHHHHHhHH
Confidence 3433333333
No 62
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.13 E-value=3.5e+02 Score=24.18 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 042512 123 RYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQ 161 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
+++...+.+..++...+++-.+.+++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 334444455555554444444444456666677777663
No 63
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=25.98 E-value=2.7e+02 Score=23.87 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042512 227 GLKGIALSSVWTNFNLVISLILYIMIS 253 (513)
Q Consensus 227 g~~g~a~a~~~~~~~~~~~~~~~~~~~ 253 (513)
++.|...++.+++.+.+++...|.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 344666677778887777776776543
No 64
>PTZ00370 STEVOR; Provisional
Probab=25.76 E-value=1.2e+02 Score=28.11 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=17.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHH-HHHHhc--cHHHHHHH
Q 042512 450 FDFEGLWCGLLAAQGSCVVTML-FVVART--DWDLQAQR 485 (513)
Q Consensus 450 ~g~~g~~~a~~~~~~~~~~~~~-~~~~~~--~~~~~~~~ 485 (513)
++..|++.-.++--.+..++.+ |+.+|| .|+++.++
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3445555544544444444444 444443 47766543
No 65
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.75 E-value=2.3e+02 Score=26.99 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccH
Q 042512 456 WCGLLAAQGSCVVTMLFVVARTDW 479 (513)
Q Consensus 456 ~~a~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+.......++..+..++++||++|
T Consensus 294 y~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 294 YPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333334444555666777888887
No 66
>PRK09546 zntB zinc transporter; Reviewed
Probab=24.62 E-value=2.2e+02 Score=27.27 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccH
Q 042512 456 WCGLLAAQGSCVVTMLFVVARTDW 479 (513)
Q Consensus 456 ~~a~~~~~~~~~~~~~~~~~~~~~ 479 (513)
++..++..++.++..++++||++|
T Consensus 300 y~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 300 FSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344445555556677888777
No 67
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.79 E-value=5.3e+02 Score=25.22 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 042512 358 LSSFMLGFTALVFT 371 (513)
Q Consensus 358 ~~~~~~~~~~~~~~ 371 (513)
++.+-+.+|+.++-
T Consensus 35 ~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 35 KLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555664443
No 68
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=21.92 E-value=4.2e+02 Score=24.60 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHH--HHHHHHHHHHHHHHHHHHHhHHH----HHHhhh
Q 042512 47 IKEARRIANIALPMILTGLLLYSRSMISMLFLGR-LGDLALAGGS--LAIGFGNITGYSLLSGLAMGMET----ICGQAF 119 (513)
Q Consensus 47 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~--~a~~~~~~~~~~~~~gl~~~~~~----~~s~~~ 119 (513)
...+|--+-++.|.+...+=+.++-...+.+++. .|..++|.-- -.+.. . ++..+..|++..... .++|.+
T Consensus 199 Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~l-d-ig~g~~aGlaIVilAIiLDRitq~~ 276 (290)
T COG4176 199 QKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQRL-D-IGLGFEAGLAIVILAIILDRLTQAF 276 (290)
T ss_pred HHHHHhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-h-hHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3456666667788888888888888888888888 8888777311 11111 1 113344444433333 356667
Q ss_pred CcCChhHHH
Q 042512 120 GAARYKLLG 128 (513)
Q Consensus 120 g~~~~~~~~ 128 (513)
+++++++.+
T Consensus 277 ~~~~~~~~~ 285 (290)
T COG4176 277 GRKAKSRHR 285 (290)
T ss_pred ccccccccc
Confidence 666554433
No 69
>PRK01637 hypothetical protein; Reviewed
Probab=21.32 E-value=6.8e+02 Score=23.40 Aligned_cols=9 Identities=0% Similarity=-0.071 Sum_probs=4.0
Q ss_pred HHhhhcCCC
Q 042512 337 VGNELGANC 345 (513)
Q Consensus 337 ~~~~~g~~~ 345 (513)
+.+.++.++
T Consensus 116 ~N~i~~~~~ 124 (286)
T PRK01637 116 LNTIWRSKR 124 (286)
T ss_pred HHHHhCCCC
Confidence 344455443
No 70
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=20.90 E-value=3.6e+02 Score=20.06 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHH
Q 042512 58 LPMILTGLLLYSRSMISMLFLGR-LGDLALAGGSLAIGFG 96 (513)
Q Consensus 58 ~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~~~ 96 (513)
.|.+++..+.-+..++..++.+. +.-.++|.++++-.+.
T Consensus 35 ~~~m~~lm~~Gl~WlvvyYl~~~~~P~~~lG~WN~~IGfg 74 (87)
T PRK02251 35 VPLFVALMIIGLIWLVVYYLSNGSLPIPALGAWNLVIGFG 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCcCcccccchhHHHHHH
Confidence 46666666666777776666665 7666888887765553
No 71
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.48 E-value=2.4e+02 Score=17.83 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042512 455 LWCGLLAAQGSCVVTMLFV 473 (513)
Q Consensus 455 ~~~a~~~~~~~~~~~~~~~ 473 (513)
+|.++.++.++...+....
T Consensus 8 VW~sYg~t~l~l~~li~~~ 26 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWS 26 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444433
Done!