BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042515
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 143 YARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSK 202
YAR+ L + + +++Y D D++V D + LW +L LGA + K
Sbjct: 84 YARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQK 142
Query: 203 FWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPP 262
G G YFN GV++I+L+KWR + W+ K Y+ +
Sbjct: 143 I-------GXADGEY--YFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDILN 193
Query: 263 FLLVFAGDVEGVEHRWN---------QHGLGGDNLEGLCRNLHP--GPVSLLHWSGKGKP 311
L F G V R+N + + + L R+ PV++ H+ G KP
Sbjct: 194 GL--FKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKP 251
Query: 312 WLR 314
W R
Sbjct: 252 WHR 254
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 143 YARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSK 202
YAR+ L + + +++Y D D++V D + LW +L LGA C + F +
Sbjct: 84 YARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---C----IDLFVER 135
Query: 203 FWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSLPP 262
G G YFN GV++I+L+KWR + W+ K Y+ +
Sbjct: 136 QEGYKQKIGMADGEY--YFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILN 193
Query: 263 FLLVFAGDVEGVEHRWN---------QHGLGGDNLEGLCRNLHPG--PVSLLHWSGKGKP 311
L F G V R+N + + + L R+ PV++ H+ G KP
Sbjct: 194 GL--FKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKP 251
Query: 312 WLR 314
W R
Sbjct: 252 WHR 254
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 143 YARIYLADLLPLTVGRIIYFDSDLIVVDDVAKLWSINLRGRVLGAPEYCHANFTNYFTSK 202
Y R+ + LP +G I+Y D D +V++ + L ++ +L A H T+ +
Sbjct: 88 YYRLLAGEFLPENLGEILYLDPDXLVINPLDDLLRTDISDYILAAA--SHTGKTDXANN- 144
Query: 203 FWSNPVFSGTVKGRRPCYFNTGVMVIDLRKWRE 235
N + GT Y+N+G+++I+L++ RE
Sbjct: 145 --VNRIRLGTDTD----YYNSGLLLINLKRARE 171
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 135 QALDQPLNYARIYLADLLPLTVGRII-----YFDSDLIVVDDVAK-LWSINLRGRVLGAP 188
QA DQ + R +L D +P+T+G+ I + L V ++ K L+++ + G +G
Sbjct: 176 QAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTG 235
Query: 189 EYCHANF 195
H F
Sbjct: 236 LNAHPRF 242
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 36 GRECPKATWSALDRRSHN-PSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KA + + R N S++H ++ +S + G+ A FSVLQH
Sbjct: 214 GLSGAKAKYRGGEIREQNGDSLVHAAIVAESAAIGGAEANAFSVLQH 260
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 36 GRECPKATWSALDRRSHN-PSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KA + + R N S++H ++ +S + G+ A FSVLQH
Sbjct: 214 GLSGAKAKYRGGEIREQNGDSLVHAAIVAESAAIGGAEANAFSVLQH 260
>pdb|3I4G|A Chain A, Crystal Structure Of A Susd-Like Carbohydrate Binding
Protein (Bf0978) From Bacteroides Fragilis Nctc 9343 At
1.35 A Resolution
Length = 528
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 6 ESRLLIFFTIIFPAISGELPRFREAPAFRNGRECPKATWSALDR 49
++ +L + F A + +LPRF PA GR C +A + L R
Sbjct: 163 QADILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGR 206
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 13 FTIIFPAISGELP-RFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGS 71
F I+FP +L + + P FR G CP + +L R N ++ LD++ + GS
Sbjct: 140 FPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQIN----AVTSFLDASLVYGS 195
Query: 72 VAGVFSVLQHATCP 85
+ S LQ+ + P
Sbjct: 196 EPSLASRLQNLSSP 209
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 117 IYRFDTNLVKGKISYSIRQALDQPLNYARIYLADLLPLTVGRII-YFDS--DLIVVDDVA 173
+Y F+ G+ S +R AL Q A+ D P+T G I +FD+ + +V A
Sbjct: 180 VYSFEPTQTPGRFSLGLRDALGQYFKLAKDGFIDECPVTDGVIFNHFDTSFEAFLVRSGA 239
Query: 174 KLWSIN 179
KL + +
Sbjct: 240 KLAACS 245
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 13 FTIIFPAISGELP-RFREAPAFRNGRECPKATWSALDRRSHNPSIIHISMTLDSTYLRGS 71
F I+FP +L + + P FR G CP + +L R N ++ LD++ + GS
Sbjct: 140 FPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQIN----AVTSFLDASLVYGS 195
Query: 72 VAGVFSVLQHATCP 85
+ S LQ+ + P
Sbjct: 196 EPXLASRLQNLSSP 209
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 36 GRECPKAT-WSALDRRSHNPSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KAT W R + S++H ++ + + + A FSVLQH
Sbjct: 233 GTSSAKATYWGGEIREQNGHSLVHAAVVTEGAAVGSAEANAFSVLQH 279
>pdb|3AAP|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila
pdb|3AAQ|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With The Inhibitor Arl 67156
pdb|3AAR|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With Amppnp
Length = 353
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 218 PCYFNTGVMVIDLRKWREGRYTEKLEYWMRVQKKYRIYELGSL 260
P YF + L + ++ +Y ++LEYW R Q ++++ E ++
Sbjct: 72 PVYFYATAGMRLLPQSQQKKYYDELEYWFRQQSQWQLVEAKTI 114
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 36 GRECPKATWSALDRRSHN-PSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KA + + R N S++H ++ +S + + A FSVLQH
Sbjct: 215 GLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQH 261
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 36 GRECPKATWSALDRRSHN-PSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KA + + R N S++H ++ +S + + A FSVLQH
Sbjct: 245 GLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQH 291
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 36 GRECPKATWSALDRRSHN-PSIIHISMTLDSTYLRGSVAGVFSVLQH 81
G KA + + R N S++H ++ +S + + A FSVLQH
Sbjct: 231 GLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQH 277
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 41 KATWSALDRR---SHNPSIIHISMTLDSTYLRGSVAGVFSVLQHATCPENIVF-----HF 92
K+ +L R+ HN + T+++ + G++ FS L P N+ H
Sbjct: 96 KSEMESLQRQFDQDHNLDLAEKDFTVNT--VAGAMKSFFSELPDPLVPYNMQIDLVEAHK 153
Query: 93 ISTQRQRLELSRTITATFPYLNFEIYRF 120
I+ + Q+L + + FP N E++++
Sbjct: 154 INDREQKLHALKEVLKKFPKENHEVFKY 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,243,501
Number of Sequences: 62578
Number of extensions: 508376
Number of successful extensions: 1154
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 28
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)