BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042517
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 29.6 bits (65), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 19 STEDNQDGKKMYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDE--KKLFNSSLRSGAPL 76
          + E  +D  + +GFF++VN GIP+++     + +K  Y    ++  K+L  S    G   
Sbjct: 20 TXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQA 79

Query: 77 QV 78
          +V
Sbjct: 80 EV 81


>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 30  YGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSG 73
           +G   ++N GIP  L  +  +  + F+  S +EK+ + +   +G
Sbjct: 77  WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 30  YGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSG 73
           +G   ++N GIP  L  +  +  + F+  S +EK+ + +   +G
Sbjct: 76  WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 119


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 30  YGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSG 73
           +G   ++N GIP  L  +  +  + F+  S +EK+ + +   +G
Sbjct: 77  WGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATG 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,231,124
Number of Sequences: 62578
Number of extensions: 210374
Number of successful extensions: 442
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)