Query 042517
Match_columns 166
No_of_seqs 204 out of 1051
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 5.5E-43 1.2E-47 287.8 14.7 155 6-162 51-254 (357)
2 PLN02254 gibberellin 3-beta-di 100.0 1.1E-42 2.4E-47 285.9 13.2 152 6-163 55-254 (358)
3 PLN02997 flavonol synthase 100.0 2.1E-42 4.5E-47 281.2 14.2 155 5-162 30-226 (325)
4 PLN02912 oxidoreductase, 2OG-F 100.0 2.8E-42 6E-47 282.8 14.5 153 6-162 40-240 (348)
5 PLN02515 naringenin,2-oxogluta 100.0 3E-42 6.6E-47 283.3 14.3 154 6-163 36-239 (358)
6 PLN02758 oxidoreductase, 2OG-F 100.0 3.4E-42 7.5E-47 283.5 14.4 154 6-162 51-256 (361)
7 PLN02299 1-aminocyclopropane-1 100.0 5.7E-42 1.2E-46 278.3 15.0 159 1-162 1-202 (321)
8 PLN02276 gibberellin 20-oxidas 100.0 6.8E-42 1.5E-46 281.8 14.4 153 6-162 39-249 (361)
9 PLN03178 leucoanthocyanidin di 100.0 1.3E-41 2.9E-46 280.0 15.5 154 6-162 46-254 (360)
10 PLN00417 oxidoreductase, 2OG-F 100.0 1.1E-41 2.3E-46 279.3 14.7 155 6-162 43-247 (348)
11 PLN02947 oxidoreductase 100.0 1.5E-41 3.3E-46 280.5 14.9 153 6-162 65-268 (374)
12 PLN02639 oxidoreductase, 2OG-F 100.0 7.6E-42 1.7E-46 279.3 13.0 153 6-162 36-234 (337)
13 PLN02704 flavonol synthase 100.0 2E-41 4.2E-46 276.7 14.9 155 5-162 40-242 (335)
14 PTZ00273 oxidase reductase; Pr 100.0 2.5E-41 5.3E-46 274.7 14.2 154 6-163 4-222 (320)
15 COG3491 PcbC Isopenicillin N s 100.0 1.8E-41 3.9E-46 267.6 12.6 155 6-164 4-219 (322)
16 PLN02904 oxidoreductase 100.0 2.9E-41 6.4E-46 277.5 14.0 153 6-163 50-251 (357)
17 KOG0143 Iron/ascorbate family 100.0 3.3E-41 7.2E-46 273.5 14.1 155 6-162 16-220 (322)
18 PLN02750 oxidoreductase, 2OG-F 100.0 5.2E-41 1.1E-45 275.2 14.6 154 5-162 24-236 (345)
19 PLN03002 oxidoreductase, 2OG-F 100.0 3.8E-41 8.2E-46 274.7 12.8 153 6-162 13-226 (332)
20 PLN02393 leucoanthocyanidin di 100.0 8.5E-41 1.8E-45 275.4 14.5 154 6-161 50-256 (362)
21 PLN02485 oxidoreductase 100.0 1.5E-40 3.2E-45 271.0 13.5 160 1-162 1-232 (329)
22 PLN02156 gibberellin 2-beta-di 100.0 3.3E-40 7.2E-45 269.1 13.4 152 5-162 24-223 (335)
23 PLN02984 oxidoreductase, 2OG-F 100.0 4.1E-40 8.9E-45 269.1 13.6 149 6-162 37-243 (341)
24 PLN02365 2-oxoglutarate-depend 100.0 4.1E-40 9E-45 265.3 13.2 151 1-163 1-194 (300)
25 PLN02403 aminocyclopropanecarb 100.0 1.4E-39 3.1E-44 262.2 14.0 153 7-161 2-196 (303)
26 PLN03001 oxidoreductase, 2OG-F 99.9 1.3E-27 2.7E-32 189.3 10.3 110 49-162 2-159 (262)
27 PLN03176 flavanone-3-hydroxyla 99.8 1.7E-18 3.7E-23 122.2 6.8 65 6-70 36-107 (120)
28 PF14226 DIOX_N: non-haem diox 99.7 1.2E-18 2.5E-23 121.8 0.5 60 8-69 1-66 (116)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 3.9E-08 8.6E-13 66.3 0.9 37 123-163 6-45 (98)
30 PF07350 DUF1479: Protein of u 86.6 0.39 8.5E-06 40.7 1.6 53 6-59 48-102 (416)
31 PRK08333 L-fuculose phosphate 60.3 5 0.00011 29.9 1.3 46 7-52 120-169 (184)
32 PRK08130 putative aldolase; Va 60.1 5.3 0.00012 30.6 1.4 34 7-40 127-162 (213)
33 PF12368 DUF3650: Protein of u 57.9 5 0.00011 20.7 0.6 18 33-50 9-26 (28)
34 PF08998 Epsilon_antitox: Bact 55.3 24 0.00051 23.3 3.6 47 34-93 27-82 (89)
35 PRK05874 L-fuculose-phosphate 54.5 7.4 0.00016 30.0 1.4 34 7-40 127-162 (217)
36 PF00046 Homeobox: Homeobox do 50.4 15 0.00033 21.4 2.1 37 77-113 13-49 (57)
37 PRK08087 L-fuculose phosphate 45.7 13 0.00028 28.5 1.6 34 7-40 122-157 (215)
38 PRK06833 L-fuculose phosphate 43.7 12 0.00026 28.7 1.0 34 7-40 124-159 (214)
39 PF06628 Catalase-rel: Catalas 42.1 36 0.00079 21.1 2.9 54 49-102 10-68 (68)
40 PF01361 Tautomerase: Tautomer 40.2 46 0.001 19.6 3.2 24 84-107 14-37 (60)
41 PRK01964 4-oxalocrotonate taut 40.0 47 0.001 19.9 3.2 25 84-108 15-39 (64)
42 PRK08660 L-fuculose phosphate 39.8 21 0.00046 26.4 1.9 33 7-40 115-149 (181)
43 TIGR01086 fucA L-fuculose phos 37.9 15 0.00032 28.2 0.8 33 8-40 122-156 (214)
44 cd00398 Aldolase_II Class II A 36.7 19 0.00041 27.3 1.2 35 6-40 121-159 (209)
45 PRK02220 4-oxalocrotonate taut 36.6 60 0.0013 19.1 3.3 25 84-108 15-39 (61)
46 PRK03634 rhamnulose-1-phosphat 36.2 28 0.00061 27.8 2.2 34 7-40 179-214 (274)
47 TIGR00013 taut 4-oxalocrotonat 35.4 60 0.0013 19.2 3.1 24 84-107 15-38 (63)
48 PRK02289 4-oxalocrotonate taut 35.1 46 0.001 19.8 2.5 25 84-108 15-39 (60)
49 cd00086 homeodomain Homeodomai 34.9 38 0.00081 19.5 2.1 38 77-114 13-50 (59)
50 TIGR02624 rhamnu_1P_ald rhamnu 34.6 32 0.00069 27.5 2.2 34 7-40 177-212 (270)
51 PRK06755 hypothetical protein; 34.2 25 0.00053 27.0 1.5 34 7-40 136-171 (209)
52 cd00491 4Oxalocrotonate_Tautom 33.1 68 0.0015 18.5 3.1 24 84-107 14-37 (58)
53 PRK00745 4-oxalocrotonate taut 32.8 68 0.0015 18.9 3.1 25 84-108 15-39 (62)
54 PF11548 Receptor_IA-2: Protei 32.7 28 0.00061 23.2 1.4 24 88-111 17-40 (91)
55 smart00702 P4Hc Prolyl 4-hydro 32.1 81 0.0018 22.9 4.0 94 39-150 9-118 (178)
56 TIGR02409 carnitine_bodg gamma 30.8 31 0.00066 28.6 1.6 43 5-47 107-152 (366)
57 PF11043 DUF2856: Protein of u 30.6 65 0.0014 21.0 2.7 24 42-65 20-43 (97)
58 PTZ00397 macrophage migration 30.5 66 0.0014 21.9 3.0 65 42-107 18-95 (116)
59 PF00596 Aldolase_II: Class II 28.9 13 0.00028 27.4 -0.8 35 6-40 122-159 (184)
60 PRK09553 tauD taurine dioxygen 28.3 54 0.0012 26.0 2.6 48 7-57 15-64 (277)
61 PRK15331 chaperone protein Sic 28.2 60 0.0013 24.1 2.6 34 25-58 16-50 (165)
62 PRK06357 hypothetical protein; 27.8 34 0.00074 26.3 1.3 34 7-40 130-171 (216)
63 PRK11546 zraP zinc resistance 27.4 1.1E+02 0.0023 22.2 3.7 55 40-94 44-106 (143)
64 KOG4520 Predicted coiled-coil 27.3 1E+02 0.0022 23.6 3.7 28 77-104 60-87 (238)
65 TIGR00568 alkb DNA alkylation 27.1 40 0.00087 25.0 1.5 20 117-142 95-114 (169)
66 PF10055 DUF2292: Uncharacteri 26.2 43 0.00094 18.5 1.2 11 140-150 13-23 (38)
67 PF10509 GalKase_gal_bdg: Gala 26.0 33 0.00071 20.2 0.7 14 136-149 25-38 (52)
68 PRK06661 hypothetical protein; 25.3 46 0.00099 25.9 1.6 33 8-40 124-160 (231)
69 PF01381 HTH_3: Helix-turn-hel 25.3 19 0.00042 20.6 -0.4 20 95-114 13-32 (55)
70 PRK01271 4-oxalocrotonate taut 24.4 1.1E+02 0.0024 19.5 3.0 25 84-108 16-40 (76)
71 PF13376 OmdA: Bacteriocin-pro 23.8 84 0.0018 19.0 2.3 31 37-67 3-36 (63)
72 smart00389 HOX Homeodomain. DN 23.8 71 0.0015 18.2 1.9 37 77-113 13-49 (56)
73 PF08921 DUF1904: Domain of un 23.4 1.2E+02 0.0025 20.8 3.2 26 84-109 12-37 (108)
74 TIGR01565 homeo_ZF_HD homeobox 23.2 61 0.0013 19.6 1.5 36 77-112 14-53 (58)
75 PF09440 eIF3_N: eIF3 subunit 23.0 66 0.0014 22.9 1.9 18 36-53 114-131 (133)
76 PRK07490 hypothetical protein; 22.9 45 0.00098 26.1 1.2 17 24-40 151-169 (245)
77 COG0325 Predicted enzyme with 22.6 1.8E+02 0.004 22.8 4.4 69 38-109 135-207 (228)
78 PF01187 MIF: Macrophage migra 22.0 1.1E+02 0.0023 20.8 2.8 23 85-107 71-93 (114)
79 TIGR03328 salvage_mtnB methylt 20.7 43 0.00093 25.1 0.6 11 30-40 153-163 (193)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=5.5e-43 Score=287.82 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=133.6
Q ss_pred CCCceeeCCCCCCCCc----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC--------
Q 042517 6 NIIPTVDRSPFFISTE----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------- 71 (166)
..||||||+.+.+++. .++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.....
T Consensus 51 ~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~ 130 (357)
T PLN02216 51 SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130 (357)
T ss_pred CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCcc
Confidence 4799999999866543 2357777 9999999999999999999999999999999999999754221
Q ss_pred ---C------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHH
Q 042517 72 ---S------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWD 118 (166)
Q Consensus 72 ---s------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~ 118 (166)
+ .||+ +++++|+++|++|+.+|++++|++|||++++|.+++.....+
T Consensus 131 ~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~ 210 (357)
T PLN02216 131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQ 210 (357)
T ss_pred ccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchh
Confidence 0 3775 899999999999999999999999999999999998764334
Q ss_pred HhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 119 FMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 119 l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
.+| ++|||+|+ ++ .+|+++|||+|+||||+|+ ++++||||+.
T Consensus 211 ~lR-l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~-~~v~GLQV~~ 254 (357)
T PLN02216 211 SIR-MNYYPPCPQPDQVIGLTPHSDAVGLTILLQV-NEVEGLQIKK 254 (357)
T ss_pred eeE-EeecCCCCCcccccCccCcccCceEEEEEec-CCCCceeEEE
Confidence 445 99999999 77 8999999999999999994 4699999963
No 2
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.1e-42 Score=285.94 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=130.6
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC-----------C
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-----------S 72 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-----------s 72 (166)
..||||||+.. +..++|++| +||||||+||||+.++++++++.+++||+||.|+|+++..... +
T Consensus 55 ~~iPvIDl~~~---~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~ 131 (358)
T PLN02254 55 ESIPVIDLSDP---NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISS 131 (358)
T ss_pred CCCCeEeCCCH---HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccccccccc
Confidence 47999999853 245678888 9999999999999999999999999999999999999754321 0
Q ss_pred -----------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc----CCcHHH
Q 042517 73 -----------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNN----DRSWDF 119 (166)
Q Consensus 73 -----------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~----~~~~~l 119 (166)
.||+ +++++|+++|.+|+.+|+++||++|||++++|.+.+. ..+...
T Consensus 132 ~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~ 211 (358)
T PLN02254 132 FFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAA 211 (358)
T ss_pred ccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCccee
Confidence 3775 8999999999999999999999999999999987662 223344
Q ss_pred hhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 120 MAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 120 ~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
+| +||||+|+ ++ .+|+++|||+|+||||+| ++++||||++.
T Consensus 212 lR-l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~v~GLQV~~~ 254 (358)
T PLN02254 212 LQ-LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SNTSGLQVFRE 254 (358)
T ss_pred EE-EecCCCCCCcccccCcCCccCCCcEEEEec--CCCCCceEECC
Confidence 45 99999999 77 899999999999999999 88999999864
No 3
>PLN02997 flavonol synthase
Probab=100.00 E-value=2.1e-42 Score=281.16 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=133.0
Q ss_pred CCCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC----------C
Q 042517 5 RNIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR----------S 72 (166)
Q Consensus 5 ~~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~----------s 72 (166)
...||||||+.+......++|++| +||||||+||||+.++++++++++++||+||.|+|+++..... +
T Consensus 30 ~~~IPvIDls~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~~~~~~~ 109 (325)
T PLN02997 30 AVDVPVVDLSVSDEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYKRNYLGG 109 (325)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccCcccccC
Confidence 457999999976322234578888 9999999999999999999999999999999999999764321 0
Q ss_pred ---------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCc-HHHhhhcc
Q 042517 73 ---------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRS-WDFMAALH 124 (166)
Q Consensus 73 ---------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~-~~l~r~l~ 124 (166)
.||+ +++++|++.|++|+.+|++++|++||+++++|.+.+.... ...+| ++
T Consensus 110 ~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~~~~~lR-l~ 188 (325)
T PLN02997 110 INNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGETAEYVLR-VN 188 (325)
T ss_pred CCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCcccceee-ee
Confidence 3764 8999999999999999999999999999999999887532 23445 99
Q ss_pred ccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 125 YFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 125 ~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
|||+|+ ++ .+|+++|||+|+||||+| ++++||||+.
T Consensus 189 ~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~v~GLQV~~ 226 (325)
T PLN02997 189 FYPPTQDTELVIGAAAHSDMGAIALLIP--NEVPGLQAFK 226 (325)
T ss_pred cCCCCCCcccccCccCccCCCceEEEec--CCCCCEEEeE
Confidence 999999 66 899999999999999999 8999999974
No 4
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.8e-42 Score=282.79 Aligned_cols=153 Identities=23% Similarity=0.334 Sum_probs=132.0
Q ss_pred CCCceeeCCCCCCCCc---hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhcccc-CCC--------
Q 042517 6 NIIPTVDRSPFFISTE---DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNS-SLR-------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~---~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~-~~~-------- 71 (166)
..||+|||+.+.+++. .++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.. ...
T Consensus 40 ~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~ 119 (348)
T PLN02912 40 DSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTS 119 (348)
T ss_pred CCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCccccccc
Confidence 4799999998865442 2357777 9999999999999999999999999999999999999422 110
Q ss_pred ---C-----------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHHH
Q 042517 72 ---S-----------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDF 119 (166)
Q Consensus 72 ---s-----------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~l 119 (166)
+ .||+ +++++|+++|.+++.+|++++|++||+++++|.+++......+
T Consensus 120 ~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~l 199 (348)
T PLN02912 120 FNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHM 199 (348)
T ss_pred ccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccee
Confidence 0 3774 8999999999999999999999999999999999887654445
Q ss_pred hhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 120 MAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 120 ~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
| ++|||||+ ++ .+|+++|||+|+||||+| |+++||||+.
T Consensus 200 r--l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d~v~GLQV~~ 240 (348)
T PLN02912 200 A--INYYPPCPQPELTYGLPGHKDANLITVLLQ--DEVSGLQVFK 240 (348)
T ss_pred e--eeecCCCCChhhcCCcCCCcCCCceEEEEE--CCCCceEEEE
Confidence 5 99999999 66 899999999999999999 8899999974
No 5
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=3e-42 Score=283.33 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=132.5
Q ss_pred CCCceeeCCCCCCCCc-----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC-------
Q 042517 6 NIIPTVDRSPFFISTE-----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~-----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------- 71 (166)
..||||||+.+..++. .++|.+| +||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 36 ~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~ 115 (358)
T PLN02515 36 DEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGFIV 115 (358)
T ss_pred CCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCccc
Confidence 4699999998864332 2356677 9999999999999999999999999999999999999743210
Q ss_pred -------C---------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcH
Q 042517 72 -------S---------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSW 117 (166)
Q Consensus 72 -------s---------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 117 (166)
+ .||+ +++++|+++|.+|+.+|+++++++||+++++|.+.+.....
T Consensus 116 ~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 195 (358)
T PLN02515 116 SSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVDMDQ 195 (358)
T ss_pred ccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcCccc
Confidence 0 3875 89999999999999999999999999999999998866543
Q ss_pred HHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 118 DFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 118 ~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
++| ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||++-
T Consensus 196 -~lr-l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d~v~GLQV~~~ 239 (358)
T PLN02515 196 -KVV-VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--DQVGGLQATRD 239 (358)
T ss_pred -eEE-EeecCCCCChhhccCCCCCCCCCeEEEEec--CCCCceEEEEC
Confidence 445 99999999 77 899999999999999999 88999999753
No 6
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.4e-42 Score=283.46 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=133.1
Q ss_pred CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------
Q 042517 6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------ 71 (166)
..||||||+.+.+++.. ++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.....
T Consensus 51 ~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~ 130 (361)
T PLN02758 51 DDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYG 130 (361)
T ss_pred CCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccC
Confidence 47999999998654432 357777 9999999999999999999999999999999999999764221
Q ss_pred -----C------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCc
Q 042517 72 -----S------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRS 116 (166)
Q Consensus 72 -----s------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~ 116 (166)
+ .||+ +++++|+++|.+|+.+|+++++++||+++++|.+++....
T Consensus 131 ~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~ 210 (361)
T PLN02758 131 QAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAV 210 (361)
T ss_pred cccccccccccCeeEEEEeeccCccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCcc
Confidence 0 3774 8999999999999999999999999999999999887655
Q ss_pred HHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCC-CCCcceeec
Q 042517 117 WDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQ-EYGGFLYKD 162 (166)
Q Consensus 117 ~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~-~~~GLqv~~ 162 (166)
..+| ++|||+|+ ++ .+|+++|||+|+||||+|+ + +++||||++
T Consensus 211 ~~lR--~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~v~GLQV~~ 256 (361)
T PLN02758 211 QAVR--MNYYPPCSRPDLVLGLSPHSDGSALTVLQQG-KGSCVGLQILK 256 (361)
T ss_pred ceee--eecCCCCCCcccccCccCccCCceeEEEEeC-CCCCCCeeeee
Confidence 4555 99999999 77 8999999999999999993 2 489999975
No 7
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=5.7e-42 Score=278.27 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=132.9
Q ss_pred CCCCCCCCceeeCCCCCCCCc---hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC-C---
Q 042517 1 MGEFRNIIPTVDRSPFFISTE---DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL-R--- 71 (166)
Q Consensus 1 m~~~~~~iPvIDls~~~~~~~---~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~-~--- 71 (166)
||- ...||+|||+.+...+. .++|++| +||||||+|||||.++++++++++++||+||.|+|+++.... +
T Consensus 1 ~~~-~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~gy~~ 79 (321)
T PLN02299 1 MAK-MESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVASKGLEG 79 (321)
T ss_pred CCC-CCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccCCCCccc
Confidence 555 46799999998854332 2357778 999999999999999999999999999999999999974321 1
Q ss_pred -----C-------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC--CcHHH
Q 042517 72 -----S-------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND--RSWDF 119 (166)
Q Consensus 72 -----s-------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~l 119 (166)
. .||+ +++++|+++|.+++.+|++++|++||+++++|.+++.. .....
T Consensus 80 ~~~~~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~ 159 (321)
T PLN02299 80 VQTEVEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFG 159 (321)
T ss_pred ccccCCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCccce
Confidence 0 3775 89999999999999999999999999999999988753 22333
Q ss_pred hhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 120 MAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 120 ~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
+| ++|||||+ ++ .+|+++|||+|+||||+|+ ++++||||+.
T Consensus 160 lR-l~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd-~~v~GLQV~~ 202 (321)
T PLN02299 160 TK-VSNYPPCPKPDLVKGLRAHTDAGGIILLFQD-DKVSGLQLLK 202 (321)
T ss_pred ee-eEecCCCCCcccccCccCccCCCeEEEEEec-CCCCCcCccc
Confidence 44 99999999 77 7899999999999999993 3599999963
No 8
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=6.8e-42 Score=281.78 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=131.3
Q ss_pred CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------
Q 042517 6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------ 71 (166)
..||||||+.+.+++.. ++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.....
T Consensus 39 ~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~ 118 (361)
T PLN02276 39 LAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYA 118 (361)
T ss_pred CCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccC
Confidence 47999999998654432 246677 9999999999999999999999999999999999999754321
Q ss_pred -------C-----------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 042517 72 -------S-----------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLK 109 (166)
Q Consensus 72 -------s-----------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 109 (166)
+ .||+ +++++|+++|++++..||++||++|||++++|.
T Consensus 119 ~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 198 (361)
T PLN02276 119 SSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYR 198 (361)
T ss_pred ccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0 1343 588999999999999999999999999999999
Q ss_pred hhhcCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 110 IYNNDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 110 ~~~~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
+++......+ | ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||+.
T Consensus 199 ~~~~~~~~~l-r-l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~v~GLQV~~ 249 (361)
T PLN02276 199 KFFEDGDSIM-R-CNYYPPCQEPELTLGTGPHCDPTSLTILHQ--DQVGGLQVFV 249 (361)
T ss_pred HHhcCcccee-e-eEeCCCCCCcccccCCccccCCceeEEEEe--cCCCceEEEE
Confidence 9987654444 4 99999999 77 899999999999999999 8899999973
No 9
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=1.3e-41 Score=280.01 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=133.3
Q ss_pred CCCceeeCCCCCCCCc------hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC------C
Q 042517 6 NIIPTVDRSPFFISTE------DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL------R 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~------~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~------~ 71 (166)
..||||||+.+.+++. .++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.... +
T Consensus 46 ~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~G 125 (360)
T PLN03178 46 PQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQG 125 (360)
T ss_pred CCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccc
Confidence 4799999999876543 2357777 999999999999999999999999999999999999976431 1
Q ss_pred --C-----------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC
Q 042517 72 --S-----------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND 114 (166)
Q Consensus 72 --s-----------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 114 (166)
+ .||+ +++++|+++|.+++.+|+++||++||+++++|.+.+..
T Consensus 126 y~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 205 (360)
T PLN03178 126 YGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGG 205 (360)
T ss_pred cccccccccccccchhHhhccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 0 3775 89999999999999999999999999999999998874
Q ss_pred C--cHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 115 R--SWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 115 ~--~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
. ....+| ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||++
T Consensus 206 ~~~~~~~lr-l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~v~GLQV~~ 254 (360)
T PLN03178 206 LEELLLQMK-INYYPRCPQPDLALGVEAHTDVSALTFILH--NMVPGLQVLY 254 (360)
T ss_pred cccchhhhh-eeccCCCCCCccccCcCCccCCCceEEEee--CCCCceeEeE
Confidence 2 233445 99999999 76 899999999999999999 8999999974
No 10
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.1e-41 Score=279.32 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=132.2
Q ss_pred CCCceeeCCCCCCCCc-----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC-------
Q 042517 6 NIIPTVDRSPFFISTE-----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~-----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------- 71 (166)
..||||||+.+.+++. .++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.....
T Consensus 43 ~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~ 122 (348)
T PLN00417 43 MDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGN 122 (348)
T ss_pred CCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCcccccc
Confidence 4799999998865432 2256677 9999999999999999999999999999999999999754211
Q ss_pred ----C------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcH
Q 042517 72 ----S------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSW 117 (166)
Q Consensus 72 ----s------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 117 (166)
+ .||+ +++++|+.+|.+|+.+|++++|++||+++++|.+++..+..
T Consensus 123 ~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~ 202 (348)
T PLN00417 123 DMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENAT 202 (348)
T ss_pred ccccccCCCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCcc
Confidence 0 2875 89999999999999999999999999999999998876433
Q ss_pred HHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 118 DFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 118 ~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
..+| ++|||+|+ ++ .+|+++|||+|+||||+|+ ++++||||+.
T Consensus 203 ~~lR-l~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd-~~v~GLQV~~ 247 (348)
T PLN00417 203 MDTR-FNMYPPCPRPDKVIGVKPHADGSAFTLLLPD-KDVEGLQFLK 247 (348)
T ss_pred ceee-eeecCCCCCcccccCCcCccCCCceEEEEec-CCCCceeEeE
Confidence 3345 99999999 77 8999999999999999993 3699999964
No 11
>PLN02947 oxidoreductase
Probab=100.00 E-value=1.5e-41 Score=280.49 Aligned_cols=153 Identities=23% Similarity=0.290 Sum_probs=130.1
Q ss_pred CCCceeeCCCCCCCC---chhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC---C-----C
Q 042517 6 NIIPTVDRSPFFIST---EDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL---R-----S 72 (166)
Q Consensus 6 ~~iPvIDls~~~~~~---~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~---~-----s 72 (166)
..||||||+.+.+.+ ..++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.... . +
T Consensus 65 ~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~ 144 (374)
T PLN02947 65 LKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTS 144 (374)
T ss_pred CCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccc
Confidence 479999999886422 13467778 999999999999999999999999999999999999973221 0 0
Q ss_pred ---------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhHHhhhcCCc
Q 042517 73 ---------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLP---TNFLKIYNNDRS 116 (166)
Q Consensus 73 ---------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~---~~~f~~~~~~~~ 116 (166)
.||+ +++++|+++|.+|+.+|+++||++||++ .++|.+.+....
T Consensus 145 ~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~ 224 (374)
T PLN02947 145 FNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGS 224 (374)
T ss_pred cccccccccCceeceeeecCCcccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcc
Confidence 3774 8999999999999999999999999997 457777665543
Q ss_pred HHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 117 WDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 117 ~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
.++| +||||+|+ ++ .+|+++|||+|+||||+| ++++||||++
T Consensus 225 -~~lr-ln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q--d~v~GLQV~~ 268 (374)
T PLN02947 225 -QMMV-VNCYPACPEPELTLGMPPHSDYGFLTLLLQ--DEVEGLQIMH 268 (374)
T ss_pred -eeee-eecCCCCCCcccccCCCCccCCCceEEEEe--cCCCCeeEeE
Confidence 4555 99999999 87 899999999999999999 8999999986
No 12
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.6e-42 Score=279.33 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=130.7
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC--------C---
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR--------S--- 72 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~--------s--- 72 (166)
..||||||+........++|++| +||||||+||||+.++++++++.+++||+||.|+|+++..... +
T Consensus 36 ~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PLN02639 36 ENVPVIDLGSPDRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNV 115 (337)
T ss_pred CCCCeEECCCccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCcccccccccc
Confidence 47999999975322223467788 9999999999999999999999999999999999999643210 0
Q ss_pred ------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHHHhhh
Q 042517 73 ------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAA 122 (166)
Q Consensus 73 ------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~l~r~ 122 (166)
.||+ +++++|+++|.+|+.+|++++|++|||++++|.+.+......+|
T Consensus 116 ~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr-- 193 (337)
T PLN02639 116 RKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMA-- 193 (337)
T ss_pred ccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccEEE--
Confidence 2775 89999999999999999999999999999999998876544444
Q ss_pred ccccCCCC-CC-CccccCCCCCCccceeeecCC-CCCcceeec
Q 042517 123 LHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQ-EYGGFLYKD 162 (166)
Q Consensus 123 l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~-~~~GLqv~~ 162 (166)
++|||+|+ ++ .+|+++|||+|+||||+| + +++||||++
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~~v~GLQV~~ 234 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQQVAGLQVLK 234 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cCCcCceEeec
Confidence 99999999 66 899999999999999999 6 599999974
No 13
>PLN02704 flavonol synthase
Probab=100.00 E-value=2e-41 Score=276.73 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=132.1
Q ss_pred CCCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC------C-----
Q 042517 5 RNIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL------R----- 71 (166)
Q Consensus 5 ~~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~------~----- 71 (166)
...||||||+........++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.... +
T Consensus 40 ~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~ 119 (335)
T PLN02704 40 DPQVPTIDLSDPDEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKL 119 (335)
T ss_pred CCCCCeEECCCccHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccc
Confidence 347999999975322234467778 999999999999999999999999999999999999875421 0
Q ss_pred --C------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCc-HH
Q 042517 72 --S------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRS-WD 118 (166)
Q Consensus 72 --s------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~-~~ 118 (166)
+ .||+ +++++|+++|.+|+.+|++++|++||+++++|.+.+..+. .+
T Consensus 120 ~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~ 199 (335)
T PLN02704 120 QKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEY 199 (335)
T ss_pred cccccCcccceeeeEeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhh
Confidence 0 2674 8999999999999999999999999999999998876543 34
Q ss_pred HhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 119 FMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 119 l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
++| ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||+.
T Consensus 200 ~lr-l~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLQV~~ 242 (335)
T PLN02704 200 LLK-INYYPPCPRPDLALGVVAHTDMSAITILVP--NEVQGLQVFR 242 (335)
T ss_pred hhh-hhcCCCCCCcccccCccCccCCcceEEEec--CCCCceeEeE
Confidence 556 99999999 77 899999999999999999 8899999963
No 14
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=2.5e-41 Score=274.70 Aligned_cols=154 Identities=22% Similarity=0.366 Sum_probs=132.4
Q ss_pred CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------
Q 042517 6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------ 71 (166)
..||||||+.+.+++.. ++|++| +||||||+||||+.++++++++++++||+||.|+|+++.....
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 78999999998765432 245677 9999999999999999999999999999999999999743211
Q ss_pred ----------C--------------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 042517 72 ----------S--------------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCL 103 (166)
Q Consensus 72 ----------s--------------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl 103 (166)
+ .||+ +++++|+++|.+++.+|++++|++||+
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 163 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGL 163 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 0 1554 799999999999999999999999999
Q ss_pred ChhhHHhhhcCCcHHHhhhccccCCCC-C-C-CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 104 PTNFLKIYNNDRSWDFMAALHYFPATE-C-E-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 104 ~~~~f~~~~~~~~~~l~r~l~~YP~~~-~-~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
++++|.+.+..+...+| ++|||+|+ + + .+|+++|||+|+||||+| +.++||||++.
T Consensus 164 ~~~~f~~~~~~~~~~lr--l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~~~GLqV~~~ 222 (320)
T PTZ00273 164 REDFFDSKFMEPLSVFR--MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--DSVGGLQVRNL 222 (320)
T ss_pred CHHHHHHhhCCCcceee--eeecCCCCCccccCcccccccCCCeEEEEec--CCCCceEEECC
Confidence 99999998877544455 99999998 4 3 889999999999999999 88999999863
No 15
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=267.60 Aligned_cols=155 Identities=24% Similarity=0.336 Sum_probs=136.0
Q ss_pred CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------
Q 042517 6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------ 71 (166)
..||+|||+.+..++.. .+|++| +||||||+||||+..+++++++++++||+||.|+|.++....+
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY 83 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGY 83 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcccccc
Confidence 78999999998776542 246667 9999999999999999999999999999999999999876443
Q ss_pred -----C-----------------------------------CCcH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Q 042517 72 -----S-----------------------------------GAPL-----QVLKEVFSRLKGTGLLIESILNECLCLPTN 106 (166)
Q Consensus 72 -----s-----------------------------------~wPd-----~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~ 106 (166)
+ .||+ +++..|+++|.+++.+||+++|++|||+++
T Consensus 84 ~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~d 163 (322)
T COG3491 84 TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPED 163 (322)
T ss_pred ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 0 3775 899999999999999999999999999999
Q ss_pred hHHhhhcCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeeccC
Q 042517 107 FLKIYNNDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDYQ 164 (166)
Q Consensus 107 ~f~~~~~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~~ 164 (166)
+|++.+.++..++| +++||+.+ .+ ..|.|+|||+|+||||+| |+++||||++.+
T Consensus 164 ~Fd~~~~d~~~~~R--LlrYP~~~~~~~~~~~GaHtD~G~lTLl~Q--d~~~GLqv~~~~ 219 (322)
T COG3491 164 FFDKRTSDPNSVLR--LLRYPSRPAREGADGVGAHTDYGLLTLLFQ--DDVGGLEVRPPN 219 (322)
T ss_pred hhhhccCCchheEE--EEecCCCcccccccccccccCCCeEEEEEe--cccCCeEEecCC
Confidence 99999666544555 99999988 66 678899999999999999 899999999873
No 16
>PLN02904 oxidoreductase
Probab=100.00 E-value=2.9e-41 Score=277.48 Aligned_cols=153 Identities=24% Similarity=0.282 Sum_probs=131.3
Q ss_pred CCCceeeCCCCCCCCc----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC--------
Q 042517 6 NIIPTVDRSPFFISTE----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------- 71 (166)
..||+|||+.+.+++. .++|++| +||||||+||||+.++++++++++++||+||.|+|+++.....
T Consensus 50 ~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~ 129 (357)
T PLN02904 50 ITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGT 129 (357)
T ss_pred CCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccc
Confidence 5799999998865332 2356677 9999999999999999999999999999999999999753210
Q ss_pred ----C-----------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHH
Q 042517 72 ----S-----------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWD 118 (166)
Q Consensus 72 ----s-----------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~ 118 (166)
+ .||+ +++++|+++|.+|+.+|+++||++||+++++|.+.+.....
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~- 208 (357)
T PLN02904 130 SLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQ- 208 (357)
T ss_pred cccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccc-
Confidence 0 3774 89999999999999999999999999999999998876543
Q ss_pred HhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 119 FMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 119 l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
++| ++|||+|+ ++ .+|+++|||+|+||||+| + ++||||++-
T Consensus 209 ~lr-l~~YPp~p~~~~~~g~~~HtD~g~lTlL~q--d-~~GLQV~~~ 251 (357)
T PLN02904 209 VMA-VNCYPACPEPEIALGMPPHSDFGSLTILLQ--S-SQGLQIMDC 251 (357)
T ss_pred EEE-eeecCCCCCcccccCCcCccCCCceEEEec--C-CCeeeEEeC
Confidence 445 99999999 77 899999999999999999 6 489999863
No 17
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=273.51 Aligned_cols=155 Identities=24% Similarity=0.306 Sum_probs=134.3
Q ss_pred CCCceeeCCCCCCCCc-----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC-C-----C
Q 042517 6 NIIPTVDRSPFFISTE-----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL-R-----S 72 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~-----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~-~-----s 72 (166)
..||+|||+.+...+. .++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.... . +
T Consensus 16 ~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~~ 95 (322)
T KOG0143|consen 16 LDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYGT 95 (322)
T ss_pred CCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcccccc
Confidence 5799999998765442 2367888 999999999999999999999999999999999999987654 1 0
Q ss_pred -----------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcH
Q 042517 73 -----------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSW 117 (166)
Q Consensus 73 -----------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 117 (166)
.||+ +++++|.+++.+++..|+++++++||++.+++.+.+.....
T Consensus 96 ~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~ 175 (322)
T KOG0143|consen 96 SFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGG 175 (322)
T ss_pred cccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccc
Confidence 3665 99999999999999999999999999998777777776433
Q ss_pred HHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 118 DFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 118 ~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
..+| +||||||| |+ .+|+++|||.|+||||+|+ ++|+||||+.
T Consensus 176 ~~~r-~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd-~~V~GLQv~~ 220 (322)
T KOG0143|consen 176 QVMR-LNYYPPCPEPELTLGLGAHTDKSFLTILLQD-DDVGGLQVFT 220 (322)
T ss_pred eEEE-EeecCCCcCccccccccCccCcCceEEEEcc-CCcCceEEEe
Confidence 3445 99999999 88 9999999999999999994 4899999995
No 18
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.2e-41 Score=275.16 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=131.3
Q ss_pred CCCCceeeCCCCCCCCc---hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC--------
Q 042517 5 RNIIPTVDRSPFFISTE---DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------- 71 (166)
Q Consensus 5 ~~~iPvIDls~~~~~~~---~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------- 71 (166)
...||||||+.+...+. .++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 24 ~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~ 103 (345)
T PLN02750 24 DEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDS 103 (345)
T ss_pred CCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCcCcc
Confidence 35799999998643332 2357777 9999999999999999999999999999999999998632110
Q ss_pred --------------------------------------CCCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 042517 72 --------------------------------------SGAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 72 --------------------------------------s~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
..||+ +++++|++.|.+|+.+|++++|++||+++++
T Consensus 104 ~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 183 (345)
T PLN02750 104 EHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLPADR 183 (345)
T ss_pred cccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 02664 7999999999999999999999999999999
Q ss_pred HHhhhcCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 108 LKIYNNDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 108 f~~~~~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
|.+++......+| ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||++
T Consensus 184 f~~~~~~~~~~lR--~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLQV~~ 236 (345)
T PLN02750 184 LNGYFKDQISFAR--FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--DDVGGLQISR 236 (345)
T ss_pred HHHHhcCcceEEE--EEecCCCCCcccccCcCCCCCCCeEEEEec--CCCCceEEee
Confidence 9999887544444 99999998 66 899999999999999999 8899999964
No 19
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-41 Score=274.68 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=127.9
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------------
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------------ 71 (166)
..||+|||+........++|++| +||||||+||||+.++++++++++++||+||.|+|+++.....
T Consensus 13 ~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e~~ 92 (332)
T PLN03002 13 SSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKL 92 (332)
T ss_pred CCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCccccccc
Confidence 47999999953211123467788 9999999999999999999999999999999999999643210
Q ss_pred --------------------C--------------CCcH--------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 042517 72 --------------------S--------------GAPL--------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLK 109 (166)
Q Consensus 72 --------------------s--------------~wPd--------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 109 (166)
+ .||+ +++++|+++|.+|+.+|+++||++||+++++|.
T Consensus 93 ~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 172 (332)
T PLN03002 93 DPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFD 172 (332)
T ss_pred ccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhc
Confidence 0 2763 889999999999999999999999999999998
Q ss_pred h--hhcCCcHHHhhhccccCCCC-CC--CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 110 I--YNNDRSWDFMAALHYFPATE-CE--NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 110 ~--~~~~~~~~l~r~l~~YP~~~-~~--~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
+ .+..+. +.+| ++|||+|+ ++ .+|+++|||+|+||||+| ++++||||++
T Consensus 173 ~~~~~~~~~-~~lr-l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~v~GLQV~~ 226 (332)
T PLN03002 173 RTEMLGKPI-ATMR-LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DGVMGLQICK 226 (332)
T ss_pred cccccCCCc-hhee-eeeCCCCCCcccCccccccccCCCeEEEEee--CCCCceEEec
Confidence 6 444443 4445 99999998 55 789999999999999999 8899999975
No 20
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=8.5e-41 Score=275.37 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=132.1
Q ss_pred CCCceeeCCCCCCCCc------hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC------
Q 042517 6 NIIPTVDRSPFFISTE------DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR------ 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~------~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~------ 71 (166)
..||+|||+.+.+++. .++|.+| +||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 50 ~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~ 129 (362)
T PLN02393 50 INIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGYG 129 (362)
T ss_pred CCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccccc
Confidence 5799999999876542 2356677 9999999999999999999999999999999999998753211
Q ss_pred C-----------------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCc
Q 042517 72 S-----------------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNNDRS 116 (166)
Q Consensus 72 s-----------------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~ 116 (166)
+ .||+ +++++|+++|.+++.+|++++|++||+++++|.+++....
T Consensus 130 ~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~ 209 (362)
T PLN02393 130 SRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGED 209 (362)
T ss_pred cccccccccccCchhheeeeecCccccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCc
Confidence 0 3775 8999999999999999999999999999999999886532
Q ss_pred --HHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceee
Q 042517 117 --WDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYK 161 (166)
Q Consensus 117 --~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~ 161 (166)
...+| ++|||+|+ ++ .+|+++|||+|+||||+|+ ++++||||+
T Consensus 210 ~~~~~lR-l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~v~GLQV~ 256 (362)
T PLN02393 210 GVGACLR-VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DNVAGLQVR 256 (362)
T ss_pred cccceee-eeecCCCCCcccccccccccCCceEEEEeeC-CCCCcceee
Confidence 23455 99999999 66 8999999999999999984 569999997
No 21
>PLN02485 oxidoreductase
Probab=100.00 E-value=1.5e-40 Score=271.02 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=130.8
Q ss_pred CCCCCCCCceeeCCCCCCC--C-------c----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhc
Q 042517 1 MGEFRNIIPTVDRSPFFIS--T-------E----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKL 65 (166)
Q Consensus 1 m~~~~~~iPvIDls~~~~~--~-------~----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~ 65 (166)
|...-..||||||+.+.++ + . .++|++| +||||||+||||+.++++++++.+++||+||.|+|++
T Consensus 1 ~~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~ 80 (329)
T PLN02485 1 MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLK 80 (329)
T ss_pred CCCCCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 4444567999999988532 1 1 2256677 9999999999999999999999999999999999999
Q ss_pred cccCCC--------------C-------------------------------CCcH------HHHHHHHHHHHHHHHHHH
Q 042517 66 FNSSLR--------------S-------------------------------GAPL------QVLKEVFSRLKGTGLLIE 94 (166)
Q Consensus 66 ~~~~~~--------------s-------------------------------~wPd------~~~~~y~~~~~~l~~~ll 94 (166)
+..... + .||+ +++++|+++|.+++.+|+
T Consensus 81 ~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll 160 (329)
T PLN02485 81 IKMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKIL 160 (329)
T ss_pred hcccCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 753211 0 2674 899999999999999999
Q ss_pred HHHHHHcCCChhhHHhhhcCCcHHHhhhccccCCCC-C----C-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 95 SILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATE-C----E-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 95 ~~la~~Lgl~~~~f~~~~~~~~~~l~r~l~~YP~~~-~----~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
+++|++||+++++|.+.+...+..++| ++|||+|+ . + .+|+++|||+|+||||+|+ ++++||||++
T Consensus 161 ~~~a~~Lgl~~~~f~~~~~~~~~~~lr-l~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd-~~~~GLqV~~ 232 (329)
T PLN02485 161 RGIALALGGSPDEFEGKMAGDPFWVMR-IIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQD-DDITALQVRN 232 (329)
T ss_pred HHHHHHcCCChHHhhhhhccCccceEE-EEeCCCCccccCCcccCcccccccCCCeEEEEecc-CCCCeeeEEc
Confidence 999999999999998765443344455 99999997 2 2 7899999999999999993 3589999985
No 22
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=3.3e-40 Score=269.05 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=127.4
Q ss_pred CCCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC-----------
Q 042517 5 RNIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR----------- 71 (166)
Q Consensus 5 ~~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~----------- 71 (166)
+..||||||+.. +..++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 24 ~~~iPvIDls~~---~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~~~~~ 100 (335)
T PLN02156 24 PVLIPVIDLTDS---DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIGPN 100 (335)
T ss_pred CCCCCcccCCCh---HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccccCCC
Confidence 346999999842 234578888 9999999999999999999999999999999999999742210
Q ss_pred -----------------------CCCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHhhhcC-CcHHHh
Q 042517 72 -----------------------SGAPL------QVLKEVFSRLKGTGLLIESILNECLCLP-TNFLKIYNND-RSWDFM 120 (166)
Q Consensus 72 -----------------------s~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~~~~~~-~~~~l~ 120 (166)
..||+ +++++|+++|++|+.+|++++|++||++ +++|.+++.. ...+.+
T Consensus 101 ~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~l 180 (335)
T PLN02156 101 GDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCL 180 (335)
T ss_pred CCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceE
Confidence 03653 8999999999999999999999999996 4789988753 223445
Q ss_pred hhccccCCCC--CC--CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 121 AALHYFPATE--CE--NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 121 r~l~~YP~~~--~~--~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
| ++|||+|+ ++ .+|+++|||+|+||||+| |+++||||+.
T Consensus 181 R-l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d~v~GLQV~~ 223 (335)
T PLN02156 181 R-MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--NDTAGLQICV 223 (335)
T ss_pred e-EEeCCCCCCCccccccCCCCccCCCceEEEEe--CCCCceEEEe
Confidence 5 99999998 33 789999999999999999 8899999963
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.1e-40 Score=269.07 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=128.9
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccc--cC------------
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFN--SS------------ 69 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~--~~------------ 69 (166)
..||+|||+.+. .++|++| +||||||+|||||.++++++++.+++||+||.|+|+++. ..
T Consensus 37 ~~IPvIDls~~~----~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~ 112 (341)
T PLN02984 37 IDIPVIDMECLD----MEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPALT 112 (341)
T ss_pred CCCCeEeCcHHH----HHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCccccc
Confidence 459999999762 4678888 999999999999999999999999999999999999963 10
Q ss_pred -------------CC--------C--------CC----cH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhhHH
Q 042517 70 -------------LR--------S--------GA----PL-----QVLKEVFSRLKGTGLLIESILNECLCLP--TNFLK 109 (166)
Q Consensus 70 -------------~~--------s--------~w----Pd-----~~~~~y~~~~~~l~~~ll~~la~~Lgl~--~~~f~ 109 (166)
.. + .| |+ +++++|+++|.+|+.+|+++||++||++ +++|.
T Consensus 113 ~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~f~ 192 (341)
T PLN02984 113 PSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQKM 192 (341)
T ss_pred ccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHH
Confidence 00 0 13 11 8999999999999999999999999999 99999
Q ss_pred hhhcCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 110 IYNNDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 110 ~~~~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
+++......+| ++|||||+ ++ .+|+++|||+|+||||+| ++++||||+.
T Consensus 193 ~~~~~~~~~lR--l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~v~GLQV~~ 243 (341)
T PLN02984 193 SYLSESTGVIR--VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DEVGGLEVMK 243 (341)
T ss_pred HHhcCccceEE--EEeCCCCCCcccccCccCccCCCceEEEEe--CCCCCeeEee
Confidence 99876544455 99999999 66 899999999999999999 8899999974
No 24
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=4.1e-40 Score=265.34 Aligned_cols=151 Identities=19% Similarity=0.322 Sum_probs=127.5
Q ss_pred CCCCCCCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC---C----
Q 042517 1 MGEFRNIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL---R---- 71 (166)
Q Consensus 1 m~~~~~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~---~---- 71 (166)
|+. ..||||||+.+. ...++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.... +
T Consensus 1 ~~~--~~iPvIDls~~~--~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~~~ 76 (300)
T PLN02365 1 MAE--VNIPTIDLEEFP--GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAP 76 (300)
T ss_pred CCc--CCCCEEEChhhH--HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCCCc
Confidence 556 789999999873 124678888 999999999999999999999999999999999999963211 0
Q ss_pred --------C-------------CCc----H-----HHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHhhhcCCcHHHh
Q 042517 72 --------S-------------GAP----L-----QVLKEVFSRLKGTGLLIESILNECLCL-PTNFLKIYNNDRSWDFM 120 (166)
Q Consensus 72 --------s-------------~wP----d-----~~~~~y~~~~~~l~~~ll~~la~~Lgl-~~~~f~~~~~~~~~~l~ 120 (166)
+ .|| + +++++|+++|.+|+.+|++++|++||+ ++++|.+. ...+|
T Consensus 77 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~----~~~lr 152 (300)
T PLN02365 77 SEVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW----PSQFR 152 (300)
T ss_pred CCCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc----cccee
Confidence 0 122 1 899999999999999999999999999 88888764 23444
Q ss_pred hhccccCCCC-CC-CccccCCCCCCccceeeecCC-CCCcceeecc
Q 042517 121 AALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQ-EYGGFLYKDY 163 (166)
Q Consensus 121 r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~-~~~GLqv~~~ 163 (166)
++|||+|| ++ .+|+++|||+|+||||+| + +++||||++.
T Consensus 153 --~~~YP~~p~~~~~~g~~~HtD~g~lTlL~q--d~~~~GLqV~~~ 194 (300)
T PLN02365 153 --INKYNFTPETVGSSGVQIHTDSGFLTILQD--DENVGGLEVMDP 194 (300)
T ss_pred --eeecCCCCCccccccccCccCCCceEEEec--CCCcCceEEEEC
Confidence 99999998 66 899999999999999999 6 5999999763
No 25
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=1.4e-39 Score=262.25 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=126.7
Q ss_pred CCceeeCCCCCCCCc---hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccC-C-----C--C-
Q 042517 7 IIPTVDRSPFFISTE---DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSS-L-----R--S- 72 (166)
Q Consensus 7 ~iPvIDls~~~~~~~---~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~-----~--s- 72 (166)
.||||||+.+...+. .++|++| +||||||+|||||.++++++++.+++||+||.|+|...... . + +
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~~~~~ 81 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEGKTSD 81 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccCCCCC
Confidence 699999998854321 2357777 99999999999999999999999999999999998521100 0 0 0
Q ss_pred ------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC--CcHHHhhhcccc
Q 042517 73 ------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND--RSWDFMAALHYF 126 (166)
Q Consensus 73 ------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~l~r~l~~Y 126 (166)
.||+ +++++|+++|.+++..|++++|++||+++++|.+.+.. .....+| ++||
T Consensus 82 ~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr-l~~Y 160 (303)
T PLN02403 82 VDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPSVGTK-VAKY 160 (303)
T ss_pred ccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCccceee-eEcC
Confidence 3775 89999999999999999999999999999999998863 2233344 9999
Q ss_pred CCCC-CC-CccccCCCCCCccceeeecCCCCCcceee
Q 042517 127 PATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYK 161 (166)
Q Consensus 127 P~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~ 161 (166)
|+|+ ++ .+|+++|||+|+||||+|+ ++++||||+
T Consensus 161 P~~~~~~~~~G~~~HtD~g~lTlL~q~-~~v~GLqV~ 196 (303)
T PLN02403 161 PECPRPELVRGLREHTDAGGIILLLQD-DQVPGLEFL 196 (303)
T ss_pred CCCCCcccccCccCccCCCeEEEEEec-CCCCceEec
Confidence 9999 77 7899999999999999993 359999995
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.95 E-value=1.3e-27 Score=189.31 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=94.9
Q ss_pred HHHHHHHhC-CCHHHHhccccCC------C-------C--------------------------CCcH------HHHHHH
Q 042517 49 IELSKTFYG-YSDDEKKLFNSSL------R-------S--------------------------GAPL------QVLKEV 82 (166)
Q Consensus 49 ~~~~~~fF~-lp~e~K~~~~~~~------~-------s--------------------------~wPd------~~~~~y 82 (166)
.+.+++||+ ||.|+|+++.... + + .||+ +++++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 467899997 9999999965421 0 0 3764 899999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHhhhcCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCccee
Q 042517 83 FSRLKGTGLLIESILNECLCLPTNFLKIYNNDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLY 160 (166)
Q Consensus 83 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv 160 (166)
+++|.+|+.+|++++|++||+++++|.+.+......+ | ++|||+|+ ++ .+|+++|||+|+||||+| |+++||||
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~l-r-l~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLqV 157 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNI-T-VSYYPPCPQPELTLGLQSHSDFGAITLLIQ--DDVEGLQL 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhh-e-eecCCCCCCcccccCCcCCcCCCeeEEEEe--CCCCceEE
Confidence 9999999999999999999999999999887644444 5 99999999 76 899999999999999999 88999999
Q ss_pred ec
Q 042517 161 KD 162 (166)
Q Consensus 161 ~~ 162 (166)
+.
T Consensus 158 ~~ 159 (262)
T PLN03001 158 LK 159 (262)
T ss_pred ee
Confidence 74
No 27
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.76 E-value=1.7e-18 Score=122.15 Aligned_cols=65 Identities=32% Similarity=0.429 Sum_probs=56.3
Q ss_pred CCCceeeCCCCCCCCc-----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC
Q 042517 6 NIIPTVDRSPFFISTE-----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL 70 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~-----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~ 70 (166)
..||||||+.+.+++. .++|++| +||||||+||||+.++++++++.+++||+||.|+|+++...+
T Consensus 36 ~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~ 107 (120)
T PLN03176 36 NEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSG 107 (120)
T ss_pred CCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCC
Confidence 4799999999875442 2356677 999999999999999999999999999999999999986654
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.71 E-value=1.2e-18 Score=121.81 Aligned_cols=60 Identities=33% Similarity=0.635 Sum_probs=49.7
Q ss_pred CceeeCCCCCCCCc----hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccC
Q 042517 8 IPTVDRSPFFISTE----DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSS 69 (166)
Q Consensus 8 iPvIDls~~~~~~~----~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~ 69 (166)
||||||+. .... .++|.+| ++|||||+||||+.++++++++.+++||+||.|+|+++...
T Consensus 1 iPvIDls~--~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~ 66 (116)
T PF14226_consen 1 IPVIDLSP--DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS 66 (116)
T ss_dssp --EEEHGG--CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC
T ss_pred CCeEECCC--CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC
Confidence 89999997 1111 2356677 99999999999999999999999999999999999999554
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.48 E-value=3.9e-08 Score=66.34 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=31.4
Q ss_pred ccccCCCCCC-CccccCCCCC--CccceeeecCCCCCcceeecc
Q 042517 123 LHYFPATECE-NNGIIVSTLY--NWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 123 l~~YP~~~~~-~~g~~~HtD~--g~lTlL~q~~~~~~GLqv~~~ 163 (166)
+++||+ ++ ..|+++|+|. +++|+|+| ++++||||++.
T Consensus 6 ~~~Y~~--~~~~~~~~~H~D~~~~~~Til~~--~~~~gL~~~~~ 45 (98)
T PF03171_consen 6 LNRYPP--PENGVGIGPHTDDEDGLLTILFQ--DEVGGLQVRDD 45 (98)
T ss_dssp EEEE-S--CCGCEEEEEEEES--SSEEEEEE--TSTS-EEEEET
T ss_pred EEECCC--cccCCceeCCCcCCCCeEEEEec--ccchheecccc
Confidence 999996 33 6899999999 99999999 89999999975
No 30
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=86.56 E-value=0.39 Score=40.71 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=38.5
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCC
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYS 59 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp 59 (166)
..||.||++.+.++...++..+. +.|++.|.|+ ||.+...+..+..++|.+.-
T Consensus 48 ~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 48 SIIPEIDFADIENGGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp -SS-EEEHHHHHCT---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHHT
T ss_pred CCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHhC
Confidence 78999999998776554555444 9999999998 99999888888888886543
No 31
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=60.35 E-value=5 Score=29.94 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=27.0
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCC--hHHHHHHHHHH
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIP--QKLFSQAIELS 52 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~--~~l~~~~~~~~ 52 (166)
.||+++.....+....+++.++ +...+.+.|||+= -+.+++++..+
T Consensus 120 ~v~v~~~~~~g~~~la~~~~~~l~~~~~vll~nHGv~~~G~~~~eA~~~~ 169 (184)
T PRK08333 120 KIPILPFRPAGSVELAEQVAEAMKEYDAVIMERHGIVTVGRSLREAFYKA 169 (184)
T ss_pred CEeeecCCCCCcHHHHHHHHHHhccCCEEEEcCCCCEEEcCCHHHHHHHH
Confidence 5888887654322223455555 6677889999962 12344444443
No 32
>PRK08130 putative aldolase; Validated
Probab=60.05 E-value=5.3 Score=30.56 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=21.2
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||+++.....+.+.++++.++ +...+.+.|||+
T Consensus 127 ~i~v~~y~~~g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRPGDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCCChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4677776543222223445555 777888999995
No 33
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=57.89 E-value=5 Score=20.72 Aligned_cols=18 Identities=6% Similarity=0.242 Sum_probs=13.6
Q ss_pred EEEeccCCChHHHHHHHH
Q 042517 33 FQIVNRGIPQKLFSQAIE 50 (166)
Q Consensus 33 F~l~nhGi~~~l~~~~~~ 50 (166)
.||..||++.+.+.+-++
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 478899999987765443
No 34
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=55.26 E-value=24 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=27.1
Q ss_pred EEeccCCCh--------HHHHHHHHHHH-HHhCCCHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHH
Q 042517 34 QIVNRGIPQ--------KLFSQAIELSK-TFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLI 93 (166)
Q Consensus 34 ~l~nhGi~~--------~l~~~~~~~~~-~fF~lp~e~K~~~~~~~~s~wPd~~~~~y~~~~~~l~~~l 93 (166)
||.||+++. .+++++-.+-+ ..|..+.++- +++.+|++.|..-...|
T Consensus 27 yVlnheldk~ds~~l~vnLLnQL~~a~~VnLFk~sl~eL-------------~~v~~Yw~~mn~y~ksi 82 (89)
T PF08998_consen 27 YVLNHELDKNDSNNLEVNLLNQLKDAKRVNLFKMSLEEL-------------EAVHEYWRSMNNYIKSI 82 (89)
T ss_dssp HHHHTT--TT-TTSHHHHHHHHHHHHHTS-GGGS-HHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccchhHHHHHHHHHHHHHHhcHHHhhHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 467888763 34444333222 5688887776 46678888888776665
No 35
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=54.46 E-value=7.4 Score=30.01 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=21.9
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.+|++++....+.+..+++.++ +...+.|.|||+
T Consensus 127 ~v~~~~y~~~gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAASGTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCCCcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 4777777644332223455565 778899999996
No 36
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=50.40 E-value=15 Score=21.40 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNN 113 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 113 (166)
..+++++.........-...||..|||+.......|.
T Consensus 13 ~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 13 KVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccccccccccCHH
Confidence 5677888877777778888999999999876665553
No 37
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=45.68 E-value=13 Score=28.49 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=21.2
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++.+....+.+..+++.++ +...+.+.|||+
T Consensus 122 ~v~~~~y~~~gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCCCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 4777776554332223445554 566788999996
No 38
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=43.72 E-value=12 Score=28.69 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=19.3
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++++....+....+.+.++ +...+.+.|||+
T Consensus 124 ~i~~~~y~~~gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYATFGTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCCCChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 4666555432222223345555 677888999996
No 39
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=42.07 E-value=36 Score=21.05 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHHHHHhC-CCHHHHhccccCCC---CCCcHH-HHHHHHHHHHHHHHHHHHHHHHHcC
Q 042517 49 IELSKTFYG-YSDDEKKLFNSSLR---SGAPLQ-VLKEVFSRLKGTGLLIESILNECLC 102 (166)
Q Consensus 49 ~~~~~~fF~-lp~e~K~~~~~~~~---s~wPd~-~~~~y~~~~~~l~~~ll~~la~~Lg 102 (166)
|..++.||. ++.++|..+...-. +.-+++ +-......+.++-..+-+.++.+||
T Consensus 10 f~Qa~~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~vd~~lg~~v~~~lg 68 (68)
T PF06628_consen 10 FSQARDLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYKVDPDLGQRVAEALG 68 (68)
T ss_dssp SHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred hhhHHHHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHhCHHHHHHHHHHcC
Confidence 556777776 67777776543211 111223 5556666666666666666666665
No 40
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=40.22 E-value=46 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 042517 84 SRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
++-.+++..|..++++.||.+.+.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCe
Confidence 345788999999999999999875
No 41
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=39.96 E-value=47 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
++-+++...|.+++++.||+|++..
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3456888899999999999998653
No 42
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=39.81 E-value=21 Score=26.44 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=19.8
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++ .....+.+.++++.++ +.-.+.+.|||+
T Consensus 115 ~ipv~-~~~~~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDIGSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCCCCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 47887 3332222223445555 667899999995
No 43
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=37.86 E-value=15 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=18.9
Q ss_pred CceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 8 IPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 8 iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
||++.+..+.+.+..+++.++ +...+.|.|||+
T Consensus 122 i~~v~y~~~gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 122 IPCVPYATFGSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred ccccCCCCCChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 566555543322223344444 667888899985
No 44
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=36.66 E-value=19 Score=27.33 Aligned_cols=35 Identities=14% Similarity=-0.025 Sum_probs=20.9
Q ss_pred CCCceeeCCCCC--CCCchhhhhcc--ccceEEEeccCC
Q 042517 6 NIIPTVDRSPFF--ISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 6 ~~iPvIDls~~~--~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
..||+++..... +....+.+.++ +.-.+.+.|||+
T Consensus 121 ~~ip~~~~~~~~~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPETGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 468888776542 11112233344 667889999996
No 45
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=36.63 E-value=60 Score=19.05 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
++-+++...|.+++++.+|+|++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3456888999999999999987653
No 46
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=36.17 E-value=28 Score=27.84 Aligned_cols=34 Identities=9% Similarity=-0.072 Sum_probs=19.7
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++.+....+...++.+.++ +...+.+.|||+
T Consensus 179 ~i~vvpy~~pgs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVPGTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4666665533222223344454 667888899996
No 47
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=35.38 E-value=60 Score=19.17 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 042517 84 SRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
++-+++.+.|.++++..||.+++.
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~ 38 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLES 38 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 345688889999999999999764
No 48
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=35.11 E-value=46 Score=19.81 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
++-++|+..|.+++++.+|.|++.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 3456889999999999999987653
No 49
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=34.88 E-value=38 Score=19.51 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND 114 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 114 (166)
..+++++.........-+..||..+|++.......|..
T Consensus 13 ~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 13 EELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56777777777777788889999999998776666543
No 50
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=34.62 E-value=32 Score=27.53 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=19.9
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++.+....+.+.++++.++ +..-+.+.|||+
T Consensus 177 ~i~vvp~~~pGs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVPGTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3666655443322223445554 667789999996
No 51
>PRK06755 hypothetical protein; Validated
Probab=34.23 E-value=25 Score=27.05 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=19.9
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||+|+.....+...++.+.++ +...+.|.|||+
T Consensus 136 ~IPiv~~~~~~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKKFADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCchhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 5888877543221112223333 667889999996
No 52
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=33.10 E-value=68 Score=18.46 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 042517 84 SRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
++-++++..|.+++++.+|.+++.
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~ 37 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEAT 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCccc
Confidence 455788899999999999998764
No 53
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=32.83 E-value=68 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
++-++|+..|.+++.+.+|.+++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 3456888999999999999998654
No 54
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=32.73 E-value=28 Score=23.22 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCChhhHHhh
Q 042517 88 GTGLLIESILNECLCLPTNFLKIY 111 (166)
Q Consensus 88 ~l~~~ll~~la~~Lgl~~~~f~~~ 111 (166)
.=+.+|++.+|+-|+|+...|.+.
T Consensus 17 ~~G~~l~~~la~~l~l~s~~F~~i 40 (91)
T PF11548_consen 17 DEGSRLMEKLAELLHLPSSSFINI 40 (91)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHHHHHHHHhCCCcccceee
Confidence 347789999999999999988775
No 55
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=32.14 E-value=81 Score=22.87 Aligned_cols=94 Identities=9% Similarity=-0.177 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCHHHHhccccC-CC-----C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHh
Q 042517 39 GIPQKLFSQAIELSKTFYGYSDDEKKLFNSS-LR-----S--GAPLQVLKEVFSRLKGTGLLIESILNECLCLPTNFLKI 110 (166)
Q Consensus 39 Gi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~-----s--~wPd~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~ 110 (166)
=++++.++.+.+.++..+. +.+.+...... .. | .|-+.. +...+...|.+.++..++++..
T Consensus 9 ~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~------~~~~~~~~l~~~i~~~~~~~~~---- 77 (178)
T smart00702 9 FLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELL------KGDLVIERIRQRLADFLGLLRG---- 77 (178)
T ss_pred CCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCC------CCCHHHHHHHHHHHHHHCCCch----
Confidence 4789999999998887653 32222111110 00 1 121100 0134556666777777777532
Q ss_pred hhcCCcHHHhhhccccCCCCCCCccccCCCCCC--------ccceeee
Q 042517 111 YNNDRSWDFMAALHYFPATECENNGIIVSTLYN--------WVKPLSQ 150 (166)
Q Consensus 111 ~~~~~~~~l~r~l~~YP~~~~~~~g~~~HtD~g--------~lTlL~q 150 (166)
.......+. +.+|++ .-...+|.|.. .+|+++-
T Consensus 78 -~~~~~~~~~--~~~Y~~----g~~~~~H~D~~~~~~~~~r~~T~~~y 118 (178)
T smart00702 78 -LPLSAEDAQ--VARYGP----GGHYGPHVDNFEDDENGDRIATFLLY 118 (178)
T ss_pred -hhccCcceE--EEEECC----CCcccCcCCCCCCCCCCCeEEEEEEE
Confidence 111123445 888876 24567899966 5777765
No 56
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=30.81 E-value=31 Score=28.64 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=30.3
Q ss_pred CCCCceeeCCCCCCCCc-hhhhhcc--ccceEEEeccCCChHHHHH
Q 042517 5 RNIIPTVDRSPFFISTE-DNQDGKK--MYGFFQIVNRGIPQKLFSQ 47 (166)
Q Consensus 5 ~~~iPvIDls~~~~~~~-~~~l~~A--~~GFF~l~nhGi~~~l~~~ 47 (166)
...+|.||++.+.+.+. ..++.++ ++|+..+.|-.++.+.+.+
T Consensus 107 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~G~v~~rg~~~~~~~~~~ 152 (366)
T TIGR02409 107 ELSLPKFDHEAVMKDDSVLLDWLSAVRDVGIAVLKGAPTKPGAVEK 152 (366)
T ss_pred cccCCceeHHHHhCCHHHHHHHHHHHHhccEEEEeCCCCCHHHHHH
Confidence 45688888877654332 3356677 9999999999887765443
No 57
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=30.61 E-value=65 Score=20.99 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHhc
Q 042517 42 QKLFSQAIELSKTFYGYSDDEKKL 65 (166)
Q Consensus 42 ~~l~~~~~~~~~~fF~lp~e~K~~ 65 (166)
.++++.+...-..|.+||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 366778778888899999999864
No 58
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.55 E-value=66 Score=21.85 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHhccccCCC-------CCCcH-----HHHHHH-HHHHHHHHHHHHHHHHHHcCCChhh
Q 042517 42 QKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------SGAPL-----QVLKEV-FSRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 42 ~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------s~wPd-----~~~~~y-~~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
..+.+++.++..+.|.-|.+ -.-+....+ +.-|- ..+... .++-++++..|.+.+++.||++++.
T Consensus 18 ~~~~~~~~~~l~~~lgkPe~-~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 18 DAALSDIENAIADVLGKPLS-YIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred HHHHHHHHHHHHHHhCCChH-HEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 45677777788888888877 222222211 10010 000000 2345678888999999999999874
No 59
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=28.93 E-value=13 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=22.4
Q ss_pred CCCceeeCCCCCCCCchhhhhcc---ccceEEEeccCC
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK---MYGFFQIVNRGI 40 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A---~~GFF~l~nhGi 40 (166)
..+|+|+.....+....+++.++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPGSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTTCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccccchhhhhhhhhhhcCCceEEeecCCce
Confidence 56888888764332223455555 458899999995
No 60
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=28.29 E-value=54 Score=26.01 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=30.9
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYG 57 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~ 57 (166)
.|.=+||+...+....++++++ ++|+..+.|-.++.+.. .+.++.|-.
T Consensus 15 ev~g~dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~l~~~~~---~~~~~~~G~ 64 (277)
T PRK09553 15 QISGIDLTRPLSDNQFEQLYHALLRHQVLFFRDQPITPQQQ---RDLAARFGD 64 (277)
T ss_pred EEeCcccCCcCCHHHHHHHHHHHHHCCEEEECCCCCCHHHH---HHHHHHhCC
Confidence 3444666653333334567777 99999999998886444 445555544
No 61
>PRK15331 chaperone protein SicA; Provisional
Probab=28.17 E-value=60 Score=24.11 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=25.9
Q ss_pred hhcc-ccceEEEeccCCChHHHHHHHHHHHHHhCC
Q 042517 25 DGKK-MYGFFQIVNRGIPQKLFSQAIELSKTFYGY 58 (166)
Q Consensus 25 l~~A-~~GFF~l~nhGi~~~l~~~~~~~~~~fF~l 58 (166)
+.+| .-|-=.-.=|||+++.++.++..+-.||..
T Consensus 16 i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 16 IWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 4445 556333346899999999999999999974
No 62
>PRK06357 hypothetical protein; Provisional
Probab=27.80 E-value=34 Score=26.30 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=18.2
Q ss_pred CCceeeCCCCCCCCchhhhhcc--cc------ceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MY------GFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~------GFF~l~nhGi 40 (166)
.||++.+....+.+..+.+.++ +. ..+.+.|||+
T Consensus 130 ~i~~~p~~~~gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPATSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCCCcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 3667666543322222333333 22 5888999995
No 63
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.42 E-value=1.1e+02 Score=22.22 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHHhCCCHHHHhccccCCC-------CCCcH-HHHHHHHHHHHHHHHHHH
Q 042517 40 IPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------SGAPL-QVLKEVFSRLKGTGLLIE 94 (166)
Q Consensus 40 i~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------s~wPd-~~~~~y~~~~~~l~~~ll 94 (166)
+++|..+.+...-++|+.-..+-|.+...... +..|| ..+.+..+++..|-.+|.
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999877776666543321 24566 668888888887776655
No 64
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.26 E-value=1e+02 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLP 104 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 104 (166)
..+..|-+++.++-..=-++|+++|||+
T Consensus 60 ~~~~~~keEi~~vkE~E~~al~eALGl~ 87 (238)
T KOG4520|consen 60 AIKEKYKEEILEVKEREQRALAEALGLP 87 (238)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6678899999999999999999999997
No 65
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=27.14 E-value=40 Score=24.98 Aligned_cols=20 Identities=0% Similarity=-0.011 Sum_probs=14.8
Q ss_pred HHHhhhccccCCCCCCCccccCCCCC
Q 042517 117 WDFMAALHYFPATECENNGIIVSTLY 142 (166)
Q Consensus 117 ~~l~r~l~~YP~~~~~~~g~~~HtD~ 142 (166)
...+ +|+|++ .-+++.|.|-
T Consensus 95 n~~L--vN~Y~~----Gd~mg~H~D~ 114 (169)
T TIGR00568 95 DACL--VNRYAP----GATLSLHQDR 114 (169)
T ss_pred CEEE--EEeecC----CCcccccccc
Confidence 3456 899987 3578899884
No 66
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.22 E-value=43 Score=18.54 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=9.6
Q ss_pred CCCCccceeee
Q 042517 140 TLYNWVKPLSQ 150 (166)
Q Consensus 140 tD~g~lTlL~q 150 (166)
..||.+||..|
T Consensus 13 i~yGsV~iiiq 23 (38)
T PF10055_consen 13 IRYGSVTIIIQ 23 (38)
T ss_pred CCcceEEEEEE
Confidence 46899999999
No 67
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=25.95 E-value=33 Score=20.23 Aligned_cols=14 Identities=36% Similarity=-0.009 Sum_probs=7.9
Q ss_pred ccCCCCCCccceee
Q 042517 136 IIVSTLYNWVKPLS 149 (166)
Q Consensus 136 ~~~HtD~g~lTlL~ 149 (166)
+|+|||+.-=.+|.
T Consensus 25 iGeHtDy~gG~Vl~ 38 (52)
T PF10509_consen 25 IGEHTDYNGGFVLP 38 (52)
T ss_dssp E-TT-GGGT-EEEE
T ss_pred cCcccccCCCeEEE
Confidence 69999987655554
No 68
>PRK06661 hypothetical protein; Provisional
Probab=25.34 E-value=46 Score=25.87 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=19.5
Q ss_pred CceeeCCCCCC--CCchhhhhcc--ccceEEEeccCC
Q 042517 8 IPTVDRSPFFI--STEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 8 iPvIDls~~~~--~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
||..++..... ....+.+.++ +...+.+.|||+
T Consensus 124 i~~~~~~~~~~~~~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 124 ISYHNYNSLALDADKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred ceecCCCccccCchhHHHHHHHHhCCCCEEEECCCCC
Confidence 55555443322 1123345566 778899999995
No 69
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=25.31 E-value=19 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=10.6
Q ss_pred HHHHHHcCCChhhHHhhhcC
Q 042517 95 SILNECLCLPTNFLKIYNND 114 (166)
Q Consensus 95 ~~la~~Lgl~~~~f~~~~~~ 114 (166)
+-+|+.+|++..++.++..+
T Consensus 13 ~~la~~~gis~~~i~~~~~g 32 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENG 32 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTT
T ss_pred HHHHHHhCCCcchhHHHhcC
Confidence 34555566666666555543
No 70
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=24.42 E-value=1.1e+02 Score=19.53 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
++-++|+..|-+++++.||.+++..
T Consensus 16 EqK~~La~~iT~a~~~~lg~~~e~v 40 (76)
T PRK01271 16 EQKAALAADITDVIIRHLNSKDSSI 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 3456889999999999999998754
No 71
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=23.82 E-value=84 Score=18.96 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=21.5
Q ss_pred ccCCChHHHHHHHH--HHHHHhC-CCHHHHhccc
Q 042517 37 NRGIPQKLFSQAIE--LSKTFYG-YSDDEKKLFN 67 (166)
Q Consensus 37 nhGi~~~l~~~~~~--~~~~fF~-lp~e~K~~~~ 67 (166)
+.-||+++...+.+ .+..||. ||...|..+.
T Consensus 3 ~~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~i 36 (63)
T PF13376_consen 3 EVEVPEDLEAALEANPEAKEFFESLTPSYRREYI 36 (63)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
Confidence 34578887766655 6777776 8888776654
No 72
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=23.75 E-value=71 Score=18.15 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNN 113 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 113 (166)
..+++++.........-...||..+|++.......|.
T Consensus 13 ~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (56)
T smart00389 13 EELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQ 49 (56)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHH
Confidence 4666677666666777788888889998766555543
No 73
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=23.42 E-value=1.2e+02 Score=20.84 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhHH
Q 042517 84 SRLKGTGLLIESILNECLCLPTNFLK 109 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~f~ 109 (166)
+.+..++..|+.-||+..+.|.+.|.
T Consensus 12 e~v~~~S~~LideLa~i~~~p~e~ft 37 (108)
T PF08921_consen 12 EQVQELSKELIDELAEICGCPRENFT 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGG-E
T ss_pred HHHHHHhHHHHHHHHHHHCCCcceEE
Confidence 45778999999999999999988764
No 74
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=23.18 E-value=61 Score=19.63 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHcCCChhhHHhhh
Q 042517 77 QVLKEVFSRLKG----TGLLIESILNECLCLPTNFLKIYN 112 (166)
Q Consensus 77 ~~~~~y~~~~~~----l~~~ll~~la~~Lgl~~~~f~~~~ 112 (166)
..|+++++...- ........||..|||++.-+.-.|
T Consensus 14 ~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWf 53 (58)
T TIGR01565 14 EKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWM 53 (58)
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeec
Confidence 345555554433 555667788888899877654333
No 75
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=22.96 E-value=66 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.4
Q ss_pred eccCCChHHHHHHHHHHH
Q 042517 36 VNRGIPQKLFSQAIELSK 53 (166)
Q Consensus 36 ~nhGi~~~l~~~~~~~~~ 53 (166)
.+|||..+.++.+++.++
T Consensus 114 ~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAK 131 (133)
T ss_pred HhcCCCHHHHHHHHHHhC
Confidence 899999999999998775
No 76
>PRK07490 hypothetical protein; Provisional
Probab=22.94 E-value=45 Score=26.12 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=12.2
Q ss_pred hhhcc--ccceEEEeccCC
Q 042517 24 QDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 24 ~l~~A--~~GFF~l~nhGi 40 (166)
++.++ +.-.+.+.|||+
T Consensus 151 ~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 151 RLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHhCcCCEEEECCCCc
Confidence 45555 666788999995
No 77
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=22.64 E-value=1.8e+02 Score=22.77 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=43.6
Q ss_pred cCCChHHHHHHHHHHHHHhCCCHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHH----HHHcCCChhhHH
Q 042517 38 RGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESIL----NECLCLPTNFLK 109 (166)
Q Consensus 38 hGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~s~wPd~~~~~y~~~~~~l~~~ll~~l----a~~Lgl~~~~f~ 109 (166)
||++.+.+.++....+++-+|-..=-|..... .|.+.....+++.++++...+.... -.++|+..||-.
T Consensus 135 ~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~---~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~D~e~ 207 (228)
T COG0325 135 SGVPPEELDELAQEVQELPNLELRGLMTIPPL---TDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGMSNDYEI 207 (228)
T ss_pred CCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCC---CCCHHHHHHHHHHHHHHHHHHHHhcCCCCeecCcCcccHHH
Confidence 78888887777777766554433333333211 2333677788888888888777653 357788877643
No 78
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=22.03 E-value=1.1e+02 Score=20.78 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
...+++..|...+.+.||+|.+.
T Consensus 71 ~n~~~s~~i~~~l~~~LgIp~~R 93 (114)
T PF01187_consen 71 QNKKYSAAITEFLEEELGIPPDR 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHT--GGG
T ss_pred HHHHHHHHHHHHHHHHhCCCcCc
Confidence 34567778888999999999874
No 79
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=20.74 E-value=43 Score=25.12 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=9.6
Q ss_pred cceEEEeccCC
Q 042517 30 YGFFQIVNRGI 40 (166)
Q Consensus 30 ~GFF~l~nhGi 40 (166)
...+.|.|||+
T Consensus 153 ~~avll~nHGv 163 (193)
T TIGR03328 153 VPGVLIRGHGL 163 (193)
T ss_pred CCEEEEcCCcc
Confidence 67899999996
Done!