Query 042517
Match_columns 166
No_of_seqs 204 out of 1051
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 3.2E-42 1.1E-46 282.3 13.2 153 6-162 45-253 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 100.0 1.5E-42 5.3E-47 279.7 9.1 154 6-163 5-213 (312)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 2.4E-42 8.3E-47 279.3 6.9 154 7-162 3-199 (319)
4 3on7_A Oxidoreductase, iron/as 100.0 1.9E-39 6.4E-44 258.2 10.6 150 6-163 2-196 (280)
5 1dcs_A Deacetoxycephalosporin 100.0 2.1E-39 7.1E-44 261.3 7.7 149 6-162 3-208 (311)
6 1odm_A Isopenicillin N synthas 100.0 4.2E-39 1.4E-43 261.5 9.0 157 1-162 1-235 (331)
7 2dbn_A Hypothetical protein YB 82.9 0.47 1.6E-05 39.5 1.7 51 6-57 99-151 (461)
8 2da7_A Zinc finger homeobox pr 63.8 2.8 9.7E-05 25.7 1.3 38 77-114 18-55 (71)
9 2x4k_A 4-oxalocrotonate tautom 59.1 10 0.00034 21.4 3.2 24 85-108 18-41 (63)
10 1gvn_A Epsilon; postsegregatio 57.0 14 0.00048 23.5 3.7 47 34-93 28-83 (90)
11 3abf_A 4-oxalocrotonate tautom 53.2 16 0.00054 20.7 3.5 23 86-108 17-39 (64)
12 2opa_A Probable tautomerase YW 48.7 19 0.00064 20.2 3.2 23 85-107 15-37 (61)
13 1otf_A 4-oxalocrotonate tautom 48.6 20 0.00068 20.1 3.4 23 85-107 15-37 (62)
14 2nys_A AGR_C_3712P; SSPB, stri 47.0 21 0.00072 25.7 3.7 59 84-162 14-79 (176)
15 2opi_A L-fuculose-1-phosphate 43.8 5.4 0.00018 29.3 0.3 34 7-40 125-160 (212)
16 2qt7_A Receptor-type tyrosine- 43.6 10 0.00035 24.4 1.5 24 88-111 17-40 (91)
17 3ry0_A Putative tautomerase; o 42.3 30 0.001 19.8 3.5 23 85-107 15-37 (65)
18 1y66_A Engrailed homeodomain; 40.5 32 0.0011 18.7 3.0 36 77-112 10-45 (52)
19 3m21_A Probable tautomerase HP 38.8 37 0.0012 19.6 3.5 23 85-107 18-40 (67)
20 1gyx_A YDCE, B1461, hypothetic 38.5 33 0.0011 20.4 3.4 24 85-108 16-39 (76)
21 1pvt_A Sugar-phosphate aldolas 38.4 9.4 0.00032 28.5 0.9 35 6-40 160-196 (238)
22 4hti_A Receptor-type tyrosine- 38.4 16 0.00055 23.8 1.9 24 88-111 24-47 (99)
23 2qas_A SSPB, hypothetical prot 37.9 21 0.00072 25.2 2.5 59 84-162 22-87 (157)
24 3mb2_A 4-oxalocrotonate tautom 37.0 39 0.0013 19.8 3.5 23 85-107 16-38 (72)
25 3m20_A 4-oxalocrotonate tautom 36.5 36 0.0012 19.3 3.2 23 85-107 14-36 (62)
26 1otj_A Alpha-ketoglutarate-dep 35.9 13 0.00044 28.2 1.3 47 6-55 16-64 (283)
27 1e4c_P L-fuculose 1-phosphate 35.2 8 0.00027 28.4 -0.0 34 7-40 122-157 (215)
28 2v9l_A Rhamnulose-1-phosphate 30.1 9.3 0.00032 29.3 -0.4 34 7-40 179-214 (274)
29 3ej9_A Alpha-subunit of trans- 29.3 59 0.002 19.4 3.4 23 85-107 16-38 (76)
30 2fk5_A Fuculose-1-phosphate al 29.1 9.1 0.00031 27.9 -0.6 34 7-40 117-153 (200)
31 1oih_A Putative alkylsulfatase 29.0 20 0.00069 27.4 1.4 48 6-56 26-76 (301)
32 3djh_A Macrophage migration in 26.7 57 0.002 21.0 3.2 23 85-107 71-93 (114)
33 2xcz_A Possible ATLS1-like lig 23.5 64 0.0022 20.6 2.9 22 86-107 16-37 (115)
34 4dh4_A MIF; trimer, isomerase; 23.5 71 0.0024 20.5 3.2 23 85-107 72-94 (114)
35 3fwt_A Macrophage migration in 23.4 69 0.0024 21.5 3.2 23 85-107 93-115 (133)
36 3kan_A D-dopachrome tautomeras 23.2 71 0.0024 20.8 3.1 23 85-107 72-94 (117)
37 1hfo_A Migration inhibitory fa 22.9 82 0.0028 20.0 3.4 66 41-107 15-93 (113)
38 2bpt_B Nucleoporin NUP1; nucle 22.7 31 0.0011 17.7 0.9 17 3-19 3-20 (39)
39 1uiz_A MIF, macrophage migrati 22.6 84 0.0029 20.0 3.4 66 41-107 16-94 (115)
40 3l9k_W Dynein intermediate cha 22.2 98 0.0034 16.3 4.2 34 58-101 1-34 (38)
41 2wkb_A Macrophage migration in 21.5 74 0.0025 20.8 3.0 23 86-108 16-38 (125)
42 2os5_A Acemif; macrophage migr 21.1 93 0.0032 20.0 3.4 66 41-107 16-94 (119)
43 3ej9_B Beta-subunit of trans-3 20.8 90 0.0031 18.8 2.9 23 86-108 16-38 (70)
44 2da4_A Hypothetical protein DK 20.2 83 0.0029 18.8 2.8 37 77-113 21-61 (80)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=3.2e-42 Score=282.33 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=133.1
Q ss_pred CCCceeeCCCCCCCCch------hhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC---C---
Q 042517 6 NIIPTVDRSPFFISTED------NQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL---R--- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~------~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~---~--- 71 (166)
..||||||+.+.+++.. ++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.... .
T Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G 124 (356)
T 1gp6_A 45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124 (356)
T ss_dssp CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence 46999999998765532 356777 999999999999999999999999999999999999986431 1
Q ss_pred ---------C----------------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC
Q 042517 72 ---------S----------------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND 114 (166)
Q Consensus 72 ---------s----------------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 114 (166)
+ .||+ +++++|+++|.+|+.+|+++||++||+++++|.+.+..
T Consensus 125 y~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 204 (356)
T 1gp6_A 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG 204 (356)
T ss_dssp EECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH
T ss_pred cCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 0 2775 89999999999999999999999999999999999873
Q ss_pred ---CcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 115 ---RSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 115 ---~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
....+ | ++|||+|+ ++ .+|+++|||+|+||||+| |+++||||++
T Consensus 205 ~~~~~~~l-r-l~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLQV~~ 253 (356)
T 1gp6_A 205 LEELLLQM-K-INYYPKCPQPELALGVEAHTDVSALTFILH--NMVPGLQLFY 253 (356)
T ss_dssp HHHCEEEE-E-EEEECCCSSTTTCCSEEEECCCSSEEEEEE--CSCCCEEEEE
T ss_pred cCCcccee-e-eeecCCCCCcccccCcCCccCCCeEEEEEE--cCCCCeEEec
Confidence 33344 4 99999999 77 899999999999999999 8899999984
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=1.5e-42 Score=279.71 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=131.3
Q ss_pred CCCceeeCCCCCCCC--chhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC----------
Q 042517 6 NIIPTVDRSPFFIST--EDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR---------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~--~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~---------- 71 (166)
..||||||+.+.+.. ..++|++| +||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 5 ~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~g~ 84 (312)
T 3oox_A 5 SAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGV 84 (312)
T ss_dssp CSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECCCC
T ss_pred CCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccccc
Confidence 679999999875321 13467788 9999999999999999999999999999999999999765210
Q ss_pred -----------------C----------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhh
Q 042517 72 -----------------S----------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYN 112 (166)
Q Consensus 72 -----------------s----------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~ 112 (166)
. .||+ +++++|+++|.+++.+|+++||++||+++++|.+.+
T Consensus 85 e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~ 164 (312)
T 3oox_A 85 ETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKPTV 164 (312)
T ss_dssp CCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHH
T ss_pred eecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 0 2775 899999999999999999999999999999999998
Q ss_pred cCCcHHHhhhccccCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 113 NDRSWDFMAALHYFPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 113 ~~~~~~l~r~l~~YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
......+| ++|||||+ ++ .+|+++|||+|+||||+| |+++||||++-
T Consensus 165 ~~~~~~lr--~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLqV~~~ 213 (312)
T 3oox_A 165 QDGNSVLR--LLHYPPIPKDATGVRAGAHGDINTITLLLG--AEEGGLEVLDR 213 (312)
T ss_dssp TTCCCEEE--EEEECCCSSCCC--CEEEECCCSSEEEEEC--CTTSCEEEECT
T ss_pred cCCcceee--eEecCCCCCCcCCcCccceecCceEEEEeE--cCcCceEEECC
Confidence 76544455 99999998 55 799999999999999999 88999999753
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=2.4e-42 Score=279.31 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=130.7
Q ss_pred CCceeeCCCCCCCCc---hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCC------C----
Q 042517 7 IIPTVDRSPFFISTE---DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSL------R---- 71 (166)
Q Consensus 7 ~iPvIDls~~~~~~~---~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~------~---- 71 (166)
.||||||+.+...+. .++|++| +||||||+|||||.++++++++.+++||+||.|+|+++.... .
T Consensus 3 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~~Gy~~~~~e~~ 82 (319)
T 1w9y_A 3 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVT 82 (319)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGG
T ss_pred CCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCcccccCC
Confidence 599999998853221 2357778 999999999999999999999999999999999999864210 0
Q ss_pred ------C------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC--CcHHHhhhccc
Q 042517 72 ------S------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND--RSWDFMAALHY 125 (166)
Q Consensus 72 ------s------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~l~r~l~~ 125 (166)
+ .||+ +++++|+++|.+++.+|+++||++||+++++|.+.+.. .+.+.+| ++|
T Consensus 83 ~~d~ke~~~~~~~p~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr-l~~ 161 (319)
T 1w9y_A 83 DMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTK-VSN 161 (319)
T ss_dssp GCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEE-EEE
T ss_pred CCChhhheeeecCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCccceeE-EEe
Confidence 0 4875 89999999999999999999999999999999998864 2333445 999
Q ss_pred cCCCC-CC-CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 126 FPATE-CE-NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 126 YP~~~-~~-~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
||||+ ++ .+|+++|||+|+||||+|+ ++++||||+.
T Consensus 162 YPp~~~~~~~~g~~~HtD~g~lTlL~qd-~~v~GLQV~~ 199 (319)
T 1w9y_A 162 YPPCPKPDLIKGLRAHTDAGGIILLFQD-DKVSGLQLLK 199 (319)
T ss_dssp CCCCSCGGGGSSCCCBCCSSSEEEEEES-SSCCCEEEEE
T ss_pred cCCCcccccccccccccCCCceEEEEec-CCCCeeeEee
Confidence 99999 77 8899999999999999993 4799999974
No 4
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=1.9e-39 Score=258.18 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=122.7
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCCHHHHhccccCCC----------C-
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYSDDEKKLFNSSLR----------S- 72 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~----------s- 72 (166)
..||||||+.. +..++|.+| +||||||+|||||.++++++++.+++||++ |+|+++..... +
T Consensus 2 ~~IPvIDls~~---~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~~~~GY~~~~~~e 76 (280)
T 3on7_A 2 MKLETIDYRAA---DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRETHDGFFPASISE 76 (280)
T ss_dssp --CCEEETTST---THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTTTCCEEECCC---
T ss_pred CCCCEEECCCh---hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCCCCCccccCcccc
Confidence 47999999964 346678888 999999999999999999999999999998 78888754321 0
Q ss_pred -----------------CCcH------HHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hh---HHhhhcCCcHHHhhhcc
Q 042517 73 -----------------GAPL------QVLKEVFSRLKGTGLLIESILNECLCLPT--NF---LKIYNNDRSWDFMAALH 124 (166)
Q Consensus 73 -----------------~wPd------~~~~~y~~~~~~l~~~ll~~la~~Lgl~~--~~---f~~~~~~~~~~l~r~l~ 124 (166)
.||+ +++++|+++|.+++.+|++++|++||++. ++ |.+++.....+++| ++
T Consensus 77 ~~~~~~~~D~kE~~~~~p~~~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~~lr-~~ 155 (280)
T 3on7_A 77 TAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLLR-IL 155 (280)
T ss_dssp -----CCCCSCEEEEECTTSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTCSSCEEE-EE
T ss_pred ccCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCCccceEE-EE
Confidence 1332 89999999999999999999999999863 33 56666554324444 99
Q ss_pred ccCCCC-CC---CccccCCCCCCccceeeecCCCCCcceeecc
Q 042517 125 YFPATE-CE---NNGIIVSTLYNWVKPLSQFTQEYGGFLYKDY 163 (166)
Q Consensus 125 ~YP~~~-~~---~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~~ 163 (166)
|||||+ ++ .+|+++|||+|+||||+| |+++||||++-
T Consensus 156 ~YP~~~~~~~~~~~g~~~HtD~g~lTlL~q--d~~~GLqV~~~ 196 (280)
T 3on7_A 156 HYPPMTGDEEMGAIRAAAHEDINLITVLPT--ANEPGLQVKAK 196 (280)
T ss_dssp EECCCCTTCCCCSEEEEEECCCSSEEEEEC--CSCCCEEEECT
T ss_pred ECCCCCCccccCcccccCCCCCCeEEEEEe--cCCCCeEEEcC
Confidence 999998 54 689999999999999999 88999999863
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=2.1e-39 Score=261.34 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=126.1
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhCCC-HHHHhccccCCC-----------
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYGYS-DDEKKLFNSSLR----------- 71 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~lp-~e~K~~~~~~~~----------- 71 (166)
..||||||+.+.+++..++|++| +||||||+|||||.++++++++.+++||+|| .|+|+++.....
T Consensus 3 ~~iPvIDls~l~~~~~~~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~~~~~ 82 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLES 82 (311)
T ss_dssp CCCCEEEHHHHHTTCSHHHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEEEC--
T ss_pred CCCcEEEchhhcCCCHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCceeeccc
Confidence 57999999987665555688888 9999999999999999999999999999999 999999865321
Q ss_pred ---------C----------------CCc--H--HHHHHHHHHHHHHHHHHHHHHHHHcCC----ChhhHHhhhcCCcHH
Q 042517 72 ---------S----------------GAP--L--QVLKEVFSRLKGTGLLIESILNECLCL----PTNFLKIYNNDRSWD 118 (166)
Q Consensus 72 ---------s----------------~wP--d--~~~~~y~~~~~~l~~~ll~~la~~Lgl----~~~~f~~~~~~~~~~ 118 (166)
. .|| . +++++|+++|.+++.+|+++||++||+ ++++|.+. ...
T Consensus 83 e~~~~~~~~~~~~d~~E~~~~~~~~n~wP~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~~~----~~~ 158 (311)
T 1dcs_A 83 ESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDC----EPL 158 (311)
T ss_dssp ---------------CEEEEECSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHSC----CCE
T ss_pred cccccccCCCCCCCcceeeeccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHhhc----chh
Confidence 0 365 2 899999999999999999999999999 88888865 234
Q ss_pred HhhhccccCCCC-CC-----CccccCCCCCCccceeeecCC-CCCc---ceeec
Q 042517 119 FMAALHYFPATE-CE-----NNGIIVSTLYNWVKPLSQFTQ-EYGG---FLYKD 162 (166)
Q Consensus 119 l~r~l~~YP~~~-~~-----~~g~~~HtD~g~lTlL~q~~~-~~~G---Lqv~~ 162 (166)
+| ++|||||+ ++ .+|+++|||+|+||||+| + +++| |||++
T Consensus 159 lr--l~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~q--d~~v~G~~~LqV~~ 208 (311)
T 1dcs_A 159 LR--FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQ--TPCANGFVSLQAEV 208 (311)
T ss_dssp EE--EEEECC-----------CCEEEEEECSSEEEEEE--ECCTTCCCCEEEEE
T ss_pred hh--eecCCCCCcccccCccccccccccCCCeEEEEec--CCCCCCceeEEEEe
Confidence 44 99999998 63 578999999999999999 7 8999 99986
No 6
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=4.2e-39 Score=261.51 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=129.6
Q ss_pred CCCC-CCCCceeeCCCCCCCCc------hhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHH-hCCCHHHHhcccc--
Q 042517 1 MGEF-RNIIPTVDRSPFFISTE------DNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTF-YGYSDDEKKLFNS-- 68 (166)
Q Consensus 1 m~~~-~~~iPvIDls~~~~~~~------~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~f-F~lp~e~K~~~~~-- 68 (166)
|||. ...||||||+.+.+++. .++|++| +||||||+|||| +++++++.+++| |+||.|+|+++..
T Consensus 1 m~s~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~~G 77 (331)
T 1odm_A 1 MGSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAIRA 77 (331)
T ss_dssp --CCCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBCTT
T ss_pred CCcccCCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhhcC
Confidence 8997 46799999999866553 2357777 999999999999 999999999999 9999999998732
Q ss_pred ------------------CCC----------------------------CCCcH--------HHHHHHHHHHHHHHHHHH
Q 042517 69 ------------------SLR----------------------------SGAPL--------QVLKEVFSRLKGTGLLIE 94 (166)
Q Consensus 69 ------------------~~~----------------------------s~wPd--------~~~~~y~~~~~~l~~~ll 94 (166)
... ..||+ +++++|+++|.+++.+|+
T Consensus 78 y~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll 157 (331)
T 1odm_A 78 YNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALL 157 (331)
T ss_dssp TCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 000 02664 799999999999999999
Q ss_pred HHHHHHcCCChhhHHhhhcCCcHHHhhhccccC------C---CC-CC--CccccCCCCCCccceeeecCCCCCcceeec
Q 042517 95 SILNECLCLPTNFLKIYNNDRSWDFMAALHYFP------A---TE-CE--NNGIIVSTLYNWVKPLSQFTQEYGGFLYKD 162 (166)
Q Consensus 95 ~~la~~Lgl~~~~f~~~~~~~~~~l~r~l~~YP------~---~~-~~--~~g~~~HtD~g~lTlL~q~~~~~~GLqv~~ 162 (166)
++||++||+++++|.+.+......+|..++||| | |+ ++ .+|+++|||+|+||||+| |+++||||++
T Consensus 158 ~~la~~Lgl~~~~f~~~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~~~~~~~g~~~HtD~g~lTlL~q--d~v~GLQV~~ 235 (331)
T 1odm_A 158 KGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ--SNVQNLQVET 235 (331)
T ss_dssp HHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEE--CSSCCEEEEE
T ss_pred HHHHHHhCCCHHHHHHHhcCcHHHHHHHHhhCCCcccccccccCCCccccccccccccCCCeEEEEee--CCCCCEEEEc
Confidence 999999999999999988764333331278999 7 77 55 689999999999999999 8899999985
No 7
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=82.93 E-value=0.47 Score=39.55 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=38.8
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHHhC
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTFYG 57 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~fF~ 57 (166)
..||.||++.+.++...++.++. +.|++.|.|. ||.+...+..+...+|.+
T Consensus 99 ~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~ 151 (461)
T 2dbn_A 99 AVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLD 151 (461)
T ss_dssp CSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHH
T ss_pred CCcceecHHHhcCCCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHH
Confidence 78999999987655433333333 9999999988 999888887777777754
No 8
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.84 E-value=2.8 Score=25.73 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYNND 114 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 114 (166)
.+++.|+....+-...-+..||+.+||+.+.....|.+
T Consensus 18 ~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 67888888887777888899999999999877776654
No 9
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=59.05 E-value=10 Score=21.36 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhH
Q 042517 85 RLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
+-++++..|.+++++.||.|++++
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p~~~v 41 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGANRQAI 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcccE
Confidence 356889999999999999998754
No 10
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=57.04 E-value=14 Score=23.49 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=29.9
Q ss_pred EEeccCCCh--------HHHHHHHHHHH-HHhCCCHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHH
Q 042517 34 QIVNRGIPQ--------KLFSQAIELSK-TFYGYSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLI 93 (166)
Q Consensus 34 ~l~nhGi~~--------~l~~~~~~~~~-~fF~lp~e~K~~~~~~~~s~wPd~~~~~y~~~~~~l~~~l 93 (166)
||.||+++. .+++++-.+-+ ..|..|.++- +++.+|++.|..-...|
T Consensus 28 ~Vlnheldk~ds~~l~vnLLnQL~~a~~VnLF~~sl~eL-------------~~v~~YW~~Mn~y~ksI 83 (90)
T 1gvn_A 28 YVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEEL-------------QAVHEYWRSMNRYSKQV 83 (90)
T ss_dssp HHHHTTCCTTCTTSHHHHHHHHHHHHHTSCGGGSCHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhHhHHHHHHHHHHHHHHhhHHHhhHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 467888763 34444333222 5688877775 46778888888776665
No 11
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=53.23 E-value=16 Score=20.73 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHcCCChhhH
Q 042517 86 LKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 86 ~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
-+++...|.+++++.||.++++.
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v 39 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEV 39 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHHHHHhCCCcccE
Confidence 46788899999999999998753
No 12
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=48.69 E-value=19 Score=20.18 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++++..|.+++++.||++++.
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~ 37 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEK 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCcCe
Confidence 34688899999999999999764
No 13
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=48.61 E-value=20 Score=20.08 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++++..|.+++.+.||+|++.
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~ 37 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLER 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCccc
Confidence 44688899999999999999764
No 14
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=46.98 E-value=21 Score=25.71 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh-H-HhhhcC-C----cHHHhhhccccCCCCCCCccccCCCCCCccceeeecCCCCC
Q 042517 84 SRLKGTGLLIESILNECLCLPTNF-L-KIYNND-R----SWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYG 156 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~-f-~~~~~~-~----~~~l~r~l~~YP~~~~~~~g~~~HtD~g~lTlL~q~~~~~~ 156 (166)
++|+.+-+++|.-++..=|||.++ | --+... + +..|+ ..||. -+||.+| ..-.
T Consensus 14 ~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pGV~i~~~L~---~~YP~---------------EMTIVLQ--hQF~ 73 (176)
T 2nys_A 14 DALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLK---SKYAE---------------QMTIVIQ--HQFW 73 (176)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHH---HHSSS---------------EEEEEES--SSCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCCccCCHHHH---hhCCC---------------ceEEEEE--eeec
Confidence 567888889998888875598763 3 222121 1 23444 47884 3788888 7778
Q ss_pred cceeec
Q 042517 157 GFLYKD 162 (166)
Q Consensus 157 GLqv~~ 162 (166)
+|+|.+
T Consensus 74 dL~V~e 79 (176)
T 2nys_A 74 DMKVTE 79 (176)
T ss_dssp EEEECS
T ss_pred CcEEec
Confidence 888765
No 15
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=43.80 E-value=5.4 Score=29.32 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=21.2
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||+++.....+.+..+.+.++ +.-.+.+.|||+
T Consensus 125 ~v~~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 6888887654322223445555 556788889985
No 16
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=43.58 E-value=10 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCChhhHHhh
Q 042517 88 GTGLLIESILNECLCLPTNFLKIY 111 (166)
Q Consensus 88 ~l~~~ll~~la~~Lgl~~~~f~~~ 111 (166)
.=+.+||+.+|+-|++|..+|.+.
T Consensus 17 ~eG~~l~~~la~ll~l~~~~Ft~i 40 (91)
T 2qt7_A 17 AAGVKLLEILAEHVHMSSGSFINI 40 (91)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHHHHHhcCCccceeee
Confidence 347899999999999999998875
No 17
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=42.33 E-value=30 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++|+..|.+++.+.||+|++.
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~ 37 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEA 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCccc
Confidence 45688999999999999999764
No 18
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=40.47 E-value=32 Score=18.74 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhh
Q 042517 77 QVLKEVFSRLKGTGLLIESILNECLCLPTNFLKIYN 112 (166)
Q Consensus 77 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~ 112 (166)
..+.+|.+.-.++...-+.-.|..|||....+..+|
T Consensus 10 rklkefvrrhqeitqetlheyaqklglnqqaieqff 45 (52)
T 1y66_A 10 RKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFF 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 567788888888888888888888998765554443
No 19
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=38.78 E-value=37 Score=19.60 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++|...|.+++++.||++++.
T Consensus 18 qK~~l~~~lt~~l~~~lg~p~~~ 40 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKVLNKNKAS 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCcCccc
Confidence 44688889999999999999764
No 20
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=38.54 E-value=33 Score=20.41 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhH
Q 042517 85 RLKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
+-++++..|.+++.+.||++++..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v 39 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCCceE
Confidence 446889999999999999998643
No 21
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=38.45 E-value=9.4 Score=28.52 Aligned_cols=35 Identities=11% Similarity=-0.138 Sum_probs=20.9
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
..||++++....+.+.++++.++ +.-.+.+.|||+
T Consensus 160 ~~v~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCSTTCHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 46888887554222223345554 556677888885
No 22
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=38.40 E-value=16 Score=23.80 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCChhhHHhh
Q 042517 88 GTGLLIESILNECLCLPTNFLKIY 111 (166)
Q Consensus 88 ~l~~~ll~~la~~Lgl~~~~f~~~ 111 (166)
.-+.+|++.+|+-|+++..+|.+.
T Consensus 24 ~~G~~l~~~la~~l~l~~~~F~~i 47 (99)
T 4hti_A 24 EEGRRLVEDVARLLQVPSSAFADV 47 (99)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHhCCchhheeee
Confidence 447899999999999999888775
No 23
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=37.86 E-value=21 Score=25.21 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh-H-HhhhcC-C----cHHHhhhccccCCCCCCCccccCCCCCCccceeeecCCCCC
Q 042517 84 SRLKGTGLLIESILNECLCLPTNF-L-KIYNND-R----SWDFMAALHYFPATECENNGIIVSTLYNWVKPLSQFTQEYG 156 (166)
Q Consensus 84 ~~~~~l~~~ll~~la~~Lgl~~~~-f-~~~~~~-~----~~~l~r~l~~YP~~~~~~~g~~~HtD~g~lTlL~q~~~~~~ 156 (166)
++|+.+-+++|.-++..=|||.++ | --+... + +..++ ..||. -+||.+| ..-.
T Consensus 22 ~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pGV~i~d~L~---~~YP~---------------EMTIVLQ--hQF~ 81 (157)
T 2qas_A 22 DALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGPQDLL---SKYPD---------------EMTIVLQ--HQYW 81 (157)
T ss_dssp HHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETTSTTCBCCHHHH---HHSSS---------------EEEEEES--SSCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCCccCCHHHH---hhCCC---------------ceEEEEE--eeec
Confidence 567778888888777754488653 3 222111 1 23444 47874 3788888 7778
Q ss_pred cceeec
Q 042517 157 GFLYKD 162 (166)
Q Consensus 157 GLqv~~ 162 (166)
+|+|.+
T Consensus 82 dL~V~e 87 (157)
T 2qas_A 82 DLAPGE 87 (157)
T ss_dssp EEEECS
T ss_pred CcEEec
Confidence 888765
No 24
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=37.02 E-value=39 Score=19.82 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
.-++|...|.+++++.||.|++.
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~ 38 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDVPLAE 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCccc
Confidence 34688889999999999999764
No 25
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.47 E-value=36 Score=19.32 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++|...|.+++++.||++++.
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~ 36 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSA 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHHHHhCcCcce
Confidence 34688889999999999999764
No 26
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=35.93 E-value=13 Score=28.23 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccCCChHHHHHHHHHHHHH
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGIPQKLFSQAIELSKTF 55 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi~~~l~~~~~~~~~~f 55 (166)
..|+-||++...+++..++++++ ++|+..+.|-.++.+... +.++.|
T Consensus 16 aei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~frg~~~~~~~~~---~~~~~~ 64 (283)
T 1otj_A 16 AQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQR---ALAQRF 64 (283)
T ss_dssp EEEESCCSSSCCCHHHHHHHHHHHHHHSEEEECSCCCCHHHHH---HHHHTT
T ss_pred EEEECCCcCccCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHH---HHHHHh
Confidence 35677788775433334567777 999999999888765543 345554
No 27
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=35.23 E-value=8 Score=28.45 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=19.3
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||+++.....+....+.+.++ +.-.+.+.|||+
T Consensus 122 ~ip~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp CBCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CcceeeCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 5777776544322223345444 555677778885
No 28
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=30.08 E-value=9.3 Score=29.31 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=18.3
Q ss_pred CCceeeCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||+++.....+.+.++++.++ +.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCSSSHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCCCCHHHHHHHHHHHccCCEEEEcCCCc
Confidence 5777766443222223344444 556677778874
No 29
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=29.32 E-value=59 Score=19.37 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++|...|.+++++.||+|++.
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~ 38 (76)
T 3ej9_A 16 QKRALSAGLLRVISEATGEPREN 38 (76)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCcCccc
Confidence 44688899999999999999864
No 30
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=29.06 E-value=9.1 Score=27.91 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=19.4
Q ss_pred CCcee-eCCCCCCCCchhhhhcc--ccceEEEeccCC
Q 042517 7 IIPTV-DRSPFFISTEDNQDGKK--MYGFFQIVNRGI 40 (166)
Q Consensus 7 ~iPvI-Dls~~~~~~~~~~l~~A--~~GFF~l~nhGi 40 (166)
.||++ +.....+.+..+++.++ +.-.+.+.|||+
T Consensus 117 ~ip~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSATEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSSSHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 57888 66543322223345555 556677778884
No 31
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=29.04 E-value=20 Score=27.42 Aligned_cols=48 Identities=10% Similarity=-0.062 Sum_probs=31.0
Q ss_pred CCCceeeCCCCCCCCchhhhhcc--ccceEEEeccC-CChHHHHHHHHHHHHHh
Q 042517 6 NIIPTVDRSPFFISTEDNQDGKK--MYGFFQIVNRG-IPQKLFSQAIELSKTFY 56 (166)
Q Consensus 6 ~~iPvIDls~~~~~~~~~~l~~A--~~GFF~l~nhG-i~~~l~~~~~~~~~~fF 56 (166)
..|+-||++...+....++++++ ++|+..+.|-. ++.+.. .+.++.|=
T Consensus 26 aei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~fRg~~~l~~~~~---~~~~~~fG 76 (301)
T 1oih_A 26 AEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQSQ---EGFAKLLG 76 (301)
T ss_dssp EEEESCCCCTTCCHHHHHHHHHHHHHHSEEEECCCTTCCHHHH---HHHHHTTS
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHH---HHHHHHhC
Confidence 34666777764433334567777 99999999987 886443 44555553
No 32
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=26.67 E-value=57 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
.-++++..|.+.+.+.||++++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~r 93 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDR 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCcce
Confidence 45678888999999999999875
No 33
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.50 E-value=64 Score=20.63 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHcCCChhh
Q 042517 86 LKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 86 ~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
-.++...+-+++++.||.|+++
T Consensus 16 ~~~l~~~~~~~l~~~lgkp~~~ 37 (115)
T 2xcz_A 16 ANSLLQELSSKLAELLGKPEKY 37 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCChHH
Confidence 3578889999999999999885
No 34
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=23.50 E-value=71 Score=20.47 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++++..|.+.+.+.||++++.
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~r 94 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNR 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCccc
Confidence 45678888899999999999874
No 35
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=23.45 E-value=69 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+-++++..|.+.+.+.||++++.
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~r 115 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAER 115 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcChhh
Confidence 34577778888999999999874
No 36
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.21 E-value=71 Score=20.76 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHcCCChhh
Q 042517 85 RLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 85 ~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
+.++++..|.+.+.+.||++++.
T Consensus 72 ~n~~~s~~i~~~l~~~Lgi~~~R 94 (117)
T 3kan_A 72 DNRSHSAHFFEFLTKELALGQDR 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCcCe
Confidence 34677778888999999999875
No 37
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=22.94 E-value=82 Score=19.98 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHHhCCCHHHHhccccCCC-------CCCcH-----HHHH-HHHHHHHHHHHHHHHHHHHHcCCChhh
Q 042517 41 PQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------SGAPL-----QVLK-EVFSRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 41 ~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------s~wPd-----~~~~-~y~~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
..++.+++-++..+-|..|.+ ..-+....+ +.-|- ..+. .=-++-+++...|.+.+.+.||++++.
T Consensus 15 ~~~l~~~l~~~l~~~l~kPe~-~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 15 PSDFLSSTSALVGNILSKPGS-YVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp CTTHHHHHHHHHHHHHTCCGG-GCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCChH-HEEEEEeCCccEEecCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 345677777888888888877 322222221 00000 0000 002234677888889999999999864
No 38
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=22.69 E-value=31 Score=17.67 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=10.2
Q ss_pred CC-CCCCceeeCCCCCCC
Q 042517 3 EF-RNIIPTVDRSPFFIS 19 (166)
Q Consensus 3 ~~-~~~iPvIDls~~~~~ 19 (166)
|| +..+|-|+++.+..+
T Consensus 3 sftpstvpninfsglngg 20 (39)
T 2bpt_B 3 SFTPSTVPNINFSGLNGG 20 (39)
T ss_dssp SCCCCSSCCCCCC-----
T ss_pred cccccccCcccccccccc
Confidence 45 788999999998654
No 39
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=22.60 E-value=84 Score=20.04 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHhCCCHHHHhccccCCC-------CCCcH-----HHHH-HHHHHHHHHHHHHHHHHHHHcCCChhh
Q 042517 41 PQKLFSQAIELSKTFYGYSDDEKKLFNSSLR-------SGAPL-----QVLK-EVFSRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 41 ~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~-------s~wPd-----~~~~-~y~~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
..++.+++-++..+-|..|.+ ...+..... +.-|- ..+. .=-++-+++...|.+.+.+.||++++.
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~-~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 1uiz_A 16 PDTLLSDLTKQLAKATGKPAE-YIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANR 94 (115)
T ss_dssp CTTHHHHHHHHHHHHHTCCGG-GCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHCcChh-HEEEEEECCcceEECCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 345777777788888888877 222222211 00000 0000 002233677888889999999999864
No 40
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.22 E-value=98 Score=16.33 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=19.7
Q ss_pred CCHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042517 58 YSDDEKKLFNSSLRSGAPLQVLKEVFSRLKGTGLLIESILNECL 101 (166)
Q Consensus 58 lp~e~K~~~~~~~~s~wPd~~~~~y~~~~~~l~~~ll~~la~~L 101 (166)
|+.|+|+++..+ +.+..|+. +-++.|=|+|++..
T Consensus 1 LseEEk~~I~~S-------~~F~~F~~---rsskviERAL~e~y 34 (38)
T 3l9k_W 1 LSEEQKQMIILS-------ENFQRFVV---RAGRVIERALSENV 34 (38)
T ss_dssp CCHHHHHHHHTS-------HHHHHHHH---HHHHHHHHHHHHSS
T ss_pred CCHHHHHHHhcC-------HHHHHHHH---HHHHHHHHHHcccc
Confidence 567777776554 44555554 44555566666543
No 41
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.48 E-value=74 Score=20.79 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHcCCChhhH
Q 042517 86 LKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 86 ~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
..++...+-+++++.||.|+++.
T Consensus 16 ~~~l~~~l~~ala~~lgkPe~~~ 38 (125)
T 2wkb_A 16 AQNTLSEIEDAISNILGKPVAYI 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHCSCCTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHE
Confidence 56788899999999999999853
No 42
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=21.08 E-value=93 Score=20.02 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHhCCCHHHHhccccCCCCCC-----cH-------HHHH-HHHHHHHHHHHHHHHHHHHHcCCChhh
Q 042517 41 PQKLFSQAIELSKTFYGYSDDEKKLFNSSLRSGA-----PL-------QVLK-EVFSRLKGTGLLIESILNECLCLPTNF 107 (166)
Q Consensus 41 ~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~s~w-----Pd-------~~~~-~y~~~~~~l~~~ll~~la~~Lgl~~~~ 107 (166)
..++.+++-++..+-|..|.+ ...+....+..| .+ ..+. .=-++-+++...|.+.+.+.||++++.
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~-~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRN-RIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDK 94 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGG-GCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHCcChH-HEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 345677777777788888877 222222111000 00 0000 002233677888888999999999864
No 43
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=20.84 E-value=90 Score=18.84 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHcCCChhhH
Q 042517 86 LKGTGLLIESILNECLCLPTNFL 108 (166)
Q Consensus 86 ~~~l~~~ll~~la~~Lgl~~~~f 108 (166)
=.+|.+.|.++++++||.|.+..
T Consensus 16 K~~lI~~VT~a~~eslgap~esV 38 (70)
T 3ej9_B 16 KQQLIRDVIDVTNKSIGSDPKII 38 (70)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHcCCChHHE
Confidence 35778889999999999998754
No 44
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.20 E-value=83 Score=18.82 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcCCChhhHHhhhc
Q 042517 77 QVLKEVFSRL----KGTGLLIESILNECLCLPTNFLKIYNN 113 (166)
Q Consensus 77 ~~~~~y~~~~----~~l~~~ll~~la~~Lgl~~~~f~~~~~ 113 (166)
..++.++... .-....-...||..|||++.-..-.|.
T Consensus 21 ~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFq 61 (80)
T 2da4_A 21 ATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIG 61 (80)
T ss_dssp HHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHH
Confidence 5677777777 777777788999999999876555554
Done!