BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042518
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 182 bits (463), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGF 81
+ L F+ L LIS F+ KGF+ ++LV LSGAHTIG+AQC FR RIYN +S+ID +
Sbjct: 135 NSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN-ESNIDPTY 193
Query: 82 ASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVA 141
A + + CP+ GGD+NLSP D+ TP FDN Y+ NL KKGLL SDQ LF+G STDS V
Sbjct: 194 AKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVT 253
Query: 142 EYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
YS N + F +DF AMI+M ++SPLTGT+GQIR C N
Sbjct: 254 AYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 39 FATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN------NQSDIDAGFASTRRRQCPAS 92
F+ G + DLVALSGAHT GRA+C F +R++N +++ ST ++ CP +
Sbjct: 153 FSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQN 212
Query: 93 GGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFS--GRSTDSIVAEYSKNCSKF 150
G S ++ LDL TP +FDNNYF NL GLL SDQ LFS G ST +IV ++ N + F
Sbjct: 213 GSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLF 272
Query: 151 KSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
FA +MI M +ISPLTG+ G+IR C VN
Sbjct: 273 FQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 125 bits (315), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 9/165 (5%)
Query: 26 SPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN--NQSDID----A 79
SPT GL + S F+ G + DLVALSGAHT GRA C F +R++N + + D
Sbjct: 142 SPT-QGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNT 200
Query: 80 GFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFS--GRSTD 137
ST + CP G S + LDL TP +FDNNYF NL GLL SDQ LFS G +T
Sbjct: 201 TLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATI 260
Query: 138 SIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+IV ++ N + F FA +MI M +ISPLTG++G+IR C N
Sbjct: 261 AIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 14/170 (8%)
Query: 24 QLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN------NQSDI 77
L F LD +I+ F + D+VALSGAHT G+A+CA F +R++N + +
Sbjct: 133 NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATL 192
Query: 78 DAGFASTRRRQCPASGGDSNLS-PLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG--- 133
+ S + CP GG+SN++ PLD T +FDNNYFKNL++ KGLL+SDQ+LFS
Sbjct: 193 ETSLLSNLQTVCPL-GGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLA 251
Query: 134 -RSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+T +V YS++ S F DF AMI M +IS G +G++R C ++N
Sbjct: 252 VNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 299
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 195
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L +DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 PTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 255
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 23 AQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQS 75
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 ANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDP 195
Query: 76 DIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG-R 134
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 TLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPN 255
Query: 135 STDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 ATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 23 AQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQS 75
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 137 ANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDP 196
Query: 76 DIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG-R 134
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 197 TLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPN 256
Query: 135 STDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 257 ATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 195
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 255
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 23 AQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQS 75
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 ANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDP 195
Query: 76 DIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG-R 134
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 TLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPN 255
Query: 135 STDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 ATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 NANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 195
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 255
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 135 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 194
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 195 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 254
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 255 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 135 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 194
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 195 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 254
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 255 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC F DR+YN
Sbjct: 136 NANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPD 195
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 255
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG H+ G+ QC F DR+YN
Sbjct: 135 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPD 194
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 195 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 254
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 255 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVAL G HT G+ QC F DR+YN
Sbjct: 135 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPD 194
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 195 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 254
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 255 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 22 EAQLSPTFYGLDTLISTFATKGFS-ARDLVALSGAHTIGRAQCAFFRDRIYN------NQ 74
A L F+ L L +F G + + DLVALSG HT G+ QC DR+YN
Sbjct: 136 NANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLYNFSNTGLPD 195
Query: 75 SDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSG- 133
++ + T R CP +G S L DL TP FDN Y+ NL ++KGL+ SDQ LFS
Sbjct: 196 PTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSP 255
Query: 134 RSTDSI--VAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
+TD+I V ++ + F + F AM M +I+PLTGT GQIR C +VN
Sbjct: 256 NATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 19 TQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN--NQSD 76
T L F+ L L ++FA +G + DLV LSG HT GRA+C+ F +R+YN N +
Sbjct: 132 TLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGN 191
Query: 77 IDAGFASTR----RRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFS 132
D +T R +CP + NL+ LDL TP FDN Y+ NL+Q GLL SDQ LFS
Sbjct: 192 PDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFS 251
Query: 133 --GRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
G T IV +S N + F S+F +MI+M +I LTG G+IR CN VN
Sbjct: 252 TPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN 303
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 12/174 (6%)
Query: 19 TQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN--NQSD 76
++ AQ+ + LI++FA K +A ++V LSGAH+IG A C+ F +R+YN + S
Sbjct: 132 SEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSG 191
Query: 77 IDA----GFASTRRRQCPASGGDSNLSP----LDLVTPRSFDNNYFKNLVQKKGLLASDQ 128
ID +A+ R CPA+ + +P LD++TP DN Y+ + GLL SDQ
Sbjct: 192 IDPTLSPSYAALLRNTCPAN--STRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQ 249
Query: 129 VLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
L + + + V + N + + S FA AM++M I LTGT G+IR C++VN
Sbjct: 250 ALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 46 ARDLVALSGAHTIGRAQCAFFRDRIYNNQSD-IDAGFASTRRRQCPASGGDSNLSPLDLV 104
A DLV +SG HTIG A C+ F DR++ I F S +R CPA G D + LD+
Sbjct: 169 ATDLVTISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRR-TVLDVR 227
Query: 105 TPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADI 164
TP FDN Y+ +LV ++GL SDQ LF+ T IV ++++ F F ++ +M +
Sbjct: 228 TPNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQM 287
Query: 165 SPLTGTAGQIRRVCNLVN 182
T G++RR C++ N
Sbjct: 288 RVRTSDQGEVRRNCSVRN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G S +D+VALSG HTIG A + +S +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAA---------HKERSGFEGP 177
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K GLL SD+ L +
Sbjct: 178 WTSN---------------------PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVF 216
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A ++++++
Sbjct: 217 RPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 35 LISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGG 94
L F G + +++VALSGAHT+GR++ DR + + + + P + G
Sbjct: 142 LRDVFYRMGLNDKEIVALSGAHTLGRSRP----DRSGWGKPE------TKYTKDGPGAPG 191
Query: 95 DSNLSPLDLVTPRSFDNNYFKNLVQKKG----LLASDQVLFSGRSTDSIVAEYSKNCSKF 150
+ + L FDN+YFK++ +++ +L +D LF S +Y+ + F
Sbjct: 192 GQSWTAQWL----KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAF 247
Query: 151 KSDFAAAMIEMADISPLTGTA 171
D+A A +++++ G A
Sbjct: 248 FKDYAEAHAKLSNLGAKFGPA 268
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 177
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 178 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 216
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 217 RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 177
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 178 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 216
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 217 RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 177
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 178 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 216
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 217 RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + +S +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKERSGFEGP 177
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 178 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 216
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 217 RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 35/148 (23%)
Query: 22 EAQLSPTFYGLDTLISTFATK-GFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAG 80
E +L G D L F G + +D+VALSG HTIG A + S +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAA---------HKEASGFEGP 189
Query: 81 FASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLV--QKKGLL--ASDQVLFSGRST 136
+ S P FDN+YF L+ +K+GLL SD+ L S
Sbjct: 190 WTSN---------------------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVF 228
Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADI 164
+V +Y+ + F +D+A A +++++
Sbjct: 229 RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 49/150 (32%)
Query: 33 DTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPAS 92
D + + F + R++VAL GAHT+G+ ++G+ + P +
Sbjct: 152 DYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-------------NSGY------EGPWT 192
Query: 93 GGDSNLSPLDLVTPRSFDNNYFKNLVQKKG-------------------LLASDQVLFSG 133
P FDN+++ NL+ + +L +D L
Sbjct: 193 -----------ANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 134 RSTDSIVAEYSKNCSKFKSDFAAAMIEMAD 163
SIV EY+ + KF DF+ A ++ +
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 37 STFATKGFSARDLVALSGAHTIGRAQCAF--FRDRIYNNQSDIDAGFASTRRRQCPASGG 94
F GF+ ++ VAL GAHT G F + ++++ D F +
Sbjct: 141 EVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQL--------- 191
Query: 95 DSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDF 154
L ++ P+ K +L SD L S V Y+K+ +F DF
Sbjct: 192 ---LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 155 AAAMIEMADI 164
A A ++ ++
Sbjct: 249 ANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 37 STFATKGFSARDLVALSGAHTIGRAQCAF--FRDRIYNNQSDIDAGFASTRRRQCPASGG 94
F GF+ ++ VAL GAHT G F + ++++ D F +
Sbjct: 140 EVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQL--------- 190
Query: 95 DSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDF 154
L ++ P+ K +L SD L S V Y+K+ +F DF
Sbjct: 191 ---LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 247
Query: 155 AAAMIEMADI 164
A A ++ ++
Sbjct: 248 ANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 37 STFATKGFSARDLVALSGAHTIGRAQCAF--FRDRIYNNQSDIDAGFASTRRRQCPASGG 94
F GF+ ++ VAL GAHT G F + ++++ D F +
Sbjct: 141 EVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQL--------- 191
Query: 95 DSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDF 154
L ++ P+ K +L SD L S V Y+K+ +F DF
Sbjct: 192 ---LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 155 AAAMIEMADI 164
A A ++ ++
Sbjct: 249 ANAFKKLTEL 258
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 49/148 (33%)
Query: 33 DTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPAS 92
D + + F + R++VALSGAHT+G+ ++G+ + P +
Sbjct: 152 DYVRTFFQRLNMNDREVVALSGAHTLGKTHLK-------------NSGY------EGPWT 192
Query: 93 GGDSNLSPLDLVTPRSFDNNYFKNLVQ-----------------KKGL--LASDQVLFSG 133
++ FDN+++ NL+ K G L +D L
Sbjct: 193 ANNN-----------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQD 241
Query: 134 RSTDSIVAEYSKNCSKFKSDFAAAMIEM 161
SIV EY+ + KF DF+ A ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AGQ+R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGQLR 188
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 123 LLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
L +Q LF GRS + A+Y + + DF A + + DI G AG++R
Sbjct: 131 LGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGV-IVDIEVGLGPAGELR 182
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 47 RDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTP 106
R++VAL GAH +G+ N+ + G A+ + G NL D
Sbjct: 166 REVVALMGAHALGKTHLK-------NSGYEGPWGAANN----VFTNEGYLNLLNEDWKLE 214
Query: 107 RSFDNNYFKNLVQKKG--LLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMAD 163
++ NN + K G +L +D L SIV EY+ + KF DF+ A ++ +
Sbjct: 215 KNDANN--EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 33 DTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPAS 92
D + + F + R++VAL GAH +G+ N+ + G A+ C +
Sbjct: 152 DYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------NSGYEGPWGAANN----CFTN 200
Query: 93 GGDSNLSPLDLVTPRSFDNNYFKNLVQKKG--LLASDQVLFSGRSTDSIVAEYSKNCSKF 150
NL D ++ NN + K G +L +D L SIV EY+ + KF
Sbjct: 201 EFYLNLLNEDWKLEKNDANN--EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 151 KSDFAAAMIEMAD 163
DF+ A ++ +
Sbjct: 259 FKDFSKAFEKLLE 271
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 137 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 184
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 127 DQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIR 175
++ +F GR+ I ++Y K+ + SDF + + + DI G AG++R
Sbjct: 141 NEPIFHGRTAIEIYSDYMKSFRENMSDFLESGL-IIDIEVGLGPAGELR 188
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 82 ASTRRRQCPASGGDSNLSPL---DLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGR 134
AS +Q GG L P+ ++VTP + + +L +++GL+ + SG+
Sbjct: 603 ASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGK 658
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 26.6 bits (57), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 142 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 172
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 147 CSKFKSDFAAAMIEMADISPLTGTAGQIRRV 177
C + KSD A+ D++P GT G +R V
Sbjct: 138 CPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,436,572
Number of Sequences: 62578
Number of extensions: 161568
Number of successful extensions: 555
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 84
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)