Query 042518
Match_columns 182
No_of_seqs 147 out of 1069
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.1E-59 2.3E-64 406.9 13.8 168 14-182 146-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.8E-55 3.9E-60 378.4 14.9 166 15-181 127-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 1.6E-38 3.5E-43 271.5 12.7 128 20-178 124-256 (289)
4 cd00649 catalase_peroxidase_1 100.0 6.2E-38 1.3E-42 276.9 13.7 148 24-172 209-401 (409)
5 cd00691 ascorbate_peroxidase A 100.0 1.4E-35 3E-40 250.1 11.8 123 15-167 121-251 (253)
6 PLN02879 L-ascorbate peroxidas 100.0 2.2E-35 4.7E-40 248.3 11.3 118 20-167 127-248 (251)
7 cd00692 ligninase Ligninase an 100.0 3.8E-35 8.2E-40 254.7 12.9 130 20-182 138-287 (328)
8 PF00141 peroxidase: Peroxidas 100.0 1E-35 2.2E-40 247.9 7.4 124 14-146 106-230 (230)
9 PLN02364 L-ascorbate peroxidas 100.0 2.4E-34 5.1E-39 242.1 11.2 118 20-167 126-248 (250)
10 TIGR00198 cat_per_HPI catalase 100.0 6.3E-33 1.4E-37 258.7 13.6 143 24-167 218-403 (716)
11 PRK15061 catalase/hydroperoxid 100.0 6.1E-33 1.3E-37 257.9 13.1 144 24-168 222-410 (726)
12 cd00314 plant_peroxidase_like 100.0 6.2E-30 1.3E-34 215.2 11.1 117 19-163 121-255 (255)
13 cd08201 plant_peroxidase_like_ 99.8 5.3E-21 1.1E-25 161.5 10.5 118 24-163 136-264 (264)
14 cd08200 catalase_peroxidase_2 99.8 4.8E-19 1.1E-23 151.5 9.0 103 31-165 166-296 (297)
15 TIGR00198 cat_per_HPI catalase 99.6 4.1E-16 8.8E-21 146.4 8.0 104 31-166 579-710 (716)
16 COG0376 KatG Catalase (peroxid 99.6 2.6E-15 5.7E-20 136.1 10.4 145 18-164 229-415 (730)
17 PRK15061 catalase/hydroperoxid 99.6 1.7E-15 3.8E-20 141.8 8.5 102 32-165 592-721 (726)
18 COG0376 KatG Catalase (peroxid 94.1 0.094 2E-06 49.0 5.3 102 32-165 596-725 (730)
19 PF11895 DUF3415: Domain of un 66.4 5.5 0.00012 28.2 2.3 18 149-166 2-19 (80)
20 KOG0400 40S ribosomal protein 65.5 3.2 7E-05 32.2 1.1 34 29-62 30-64 (151)
21 PF04225 OapA: Opacity-associa 34.6 28 0.00061 24.5 1.7 25 33-57 11-35 (85)
22 PF13670 PepSY_2: Peptidase pr 33.9 63 0.0014 22.1 3.4 41 9-49 5-48 (83)
23 COG1913 Predicted Zn-dependent 31.3 19 0.0004 29.3 0.4 12 54-65 132-143 (181)
24 PF09349 OHCU_decarbox: OHCU d 28.8 50 0.0011 25.8 2.5 33 25-57 28-63 (159)
25 PLN00017 photosystem I reactio 27.7 30 0.00065 24.8 0.9 22 142-163 37-58 (90)
26 PLN02161 beta-amylase 24.0 85 0.0018 29.6 3.3 33 140-176 235-272 (531)
27 COG1105 FruK Fructose-1-phosph 23.9 83 0.0018 27.7 3.1 32 24-55 105-138 (310)
28 COG3652 Predicted outer membra 23.3 1.3E+02 0.0028 24.2 3.8 44 106-161 109-154 (170)
29 PHA03420 E4 protein; Provision 22.8 46 0.001 25.4 1.1 15 108-122 14-28 (137)
30 PF04844 Ovate: Transcriptiona 21.7 72 0.0016 21.2 1.8 14 151-164 5-18 (59)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.1e-59 Score=406.86 Aligned_cols=168 Identities=36% Similarity=0.643 Sum_probs=156.7
Q ss_pred HhhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC-------CCCCCCHHHHHHhh
Q 042518 14 LLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN-------NQSDIDAGFASTRR 86 (182)
Q Consensus 14 ~~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~-------~dp~~d~~~~~~L~ 86 (182)
++|++++++ +||+|+.++++|++.|++|||+.+|||+||||||||++||.+|.+|||| .||+|||.|+..|+
T Consensus 146 ~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~ 224 (324)
T PLN03030 146 RVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQ 224 (324)
T ss_pred CCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHh
Confidence 356677775 8999999999999999999999999999999999999999999999996 38999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhCh----hHHHHHHHHHHHHHh
Q 042518 87 RQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNC----SKFKSDFAAAMIEMA 162 (182)
Q Consensus 87 ~~Cp~~~~~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~~----~~F~~~Fa~Am~KMg 162 (182)
..||..++..+.++||+.||.+|||+||++|+.++|+|+|||+|++|++|+.+|++||.|+ +.|+++|++||+|||
T Consensus 225 ~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg 304 (324)
T PLN03030 225 ALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMS 304 (324)
T ss_pred ccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHc
Confidence 9999643333568899999999999999999999999999999999999999999999875 599999999999999
Q ss_pred cCCCCCCCCCcccccCccCC
Q 042518 163 DISPLTGTAGQIRRVCNLVN 182 (182)
Q Consensus 163 ~i~vltG~~GeIR~~C~~vN 182 (182)
+|+||||.+||||++|++||
T Consensus 305 ~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 305 NIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred cCCCCCCCCCceeccccccC
Confidence 99999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.8e-55 Score=378.42 Aligned_cols=166 Identities=48% Similarity=0.847 Sum_probs=156.5
Q ss_pred hhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC------CCCCCCHHHHHHhhhc
Q 042518 15 LIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN------NQSDIDAGFASTRRRQ 88 (182)
Q Consensus 15 ~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~------~dp~~d~~~~~~L~~~ 88 (182)
+|++..+ +.||+|+.+++++++.|+++||+.+|||+|+||||||++||.+|.+|+|+ +||+|++.|+..|+..
T Consensus 127 ~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~ 205 (298)
T cd00693 127 VSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKK 205 (298)
T ss_pred ccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCC
Confidence 3455554 68999999999999999999999999999999999999999999999986 4899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCCCCC
Q 042518 89 CPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLT 168 (182)
Q Consensus 89 Cp~~~~~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~vlt 168 (182)
||..+++.+.+++|+.||.+|||+||++++.++|+|.|||+|+.|++|+.+|++||.||+.|+++|++||+|||+|+|+|
T Consensus 206 Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~t 285 (298)
T cd00693 206 CPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLT 285 (298)
T ss_pred CCCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCcc
Confidence 99765556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCccC
Q 042518 169 GTAGQIRRVCNLV 181 (182)
Q Consensus 169 G~~GeIR~~C~~v 181 (182)
|.+||||++|++|
T Consensus 286 g~~GeiR~~C~~~ 298 (298)
T cd00693 286 GSQGEIRKNCRVV 298 (298)
T ss_pred CCCCccCCccccC
Confidence 9999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-38 Score=271.47 Aligned_cols=128 Identities=30% Similarity=0.496 Sum_probs=116.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCC-CCCCCCCCHHHHHHhhhcCCCCCCCCCC
Q 042518 20 QCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRI-YNNQSDIDAGFASTRRRQCPASGGDSNL 98 (182)
Q Consensus 20 ~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl-~~~dp~~d~~~~~~L~~~Cp~~~~~~~~ 98 (182)
.++++||+|+.+++++++.|+++||+++|||+|+||||||++||. |+ |. +
T Consensus 124 ~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~----r~g~~-g------------------------ 174 (289)
T PLN02608 124 PEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE----RSGFD-G------------------------ 174 (289)
T ss_pred CccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc----CCCCC-C------------------------
Confidence 356689999999999999999999999999999999999999994 44 20 0
Q ss_pred CCCCCCCCCccchHHHHHHhhc--ccC--ccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042518 99 SPLDLVTPRSFDNNYFKNLVQK--KGL--LASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQI 174 (182)
Q Consensus 99 ~~lD~~Tp~~fDn~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~vltG~~GeI 174 (182)
+.+ .||.+|||+||++++.+ +|+ |.|||+|+.|++|+.+|+.||.|++.|+++|++||+|||+|+|+||.+||+
T Consensus 175 -~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~ 252 (289)
T PLN02608 175 -PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFK 252 (289)
T ss_pred -CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 112 68999999999999999 798 799999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 042518 175 RRVC 178 (182)
Q Consensus 175 R~~C 178 (182)
.+..
T Consensus 253 ~~~~ 256 (289)
T PLN02608 253 KKST 256 (289)
T ss_pred cccC
Confidence 8754
No 4
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.2e-38 Score=276.89 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=134.7
Q ss_pred CCCCCCCCHHHHHHHHHHCCCChhhhhhh-hcccccccccccccCCCCCCCCCCCCHHHHHHhh--hcCCCCCCC-CCCC
Q 042518 24 QLSPTFYGLDTLISTFATKGFSARDLVAL-SGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRR--RQCPASGGD-SNLS 99 (182)
Q Consensus 24 ~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~--~~Cp~~~~~-~~~~ 99 (182)
.||+|+.++++|++.|++|||+.+||||| +||||||++||..|..||. +||.+++.|+..|+ ..||.+.+. ....
T Consensus 209 gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~s 287 (409)
T cd00649 209 GNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-PEPEAAPIEQQGLGWKNSYGTGKGKDTITS 287 (409)
T ss_pred CCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-CCCCcCHHHHHhhcccccCCCCCCCCCccc
Confidence 69999999999999999999999999999 5999999999999999997 79999999999995 899975433 3345
Q ss_pred CCC---CCCCCccchHHHHHHhh------------------------------------cccCccchhhhhcCcchHHHH
Q 042518 100 PLD---LVTPRSFDNNYFKNLVQ------------------------------------KKGLLASDQVLFSGRSTDSIV 140 (182)
Q Consensus 100 ~lD---~~Tp~~fDn~Yy~~l~~------------------------------------~~glL~SD~~L~~d~~t~~~V 140 (182)
.+| ..||.+|||+||++|+. ++++|.||++|+.|++++++|
T Consensus 288 glDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV 367 (409)
T cd00649 288 GLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKIS 367 (409)
T ss_pred cCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHH
Confidence 688 47999999999999998 669999999999999999999
Q ss_pred HHHhhChhHHHHHHHHHHHHH--hcCCCCCCCCC
Q 042518 141 AEYSKNCSKFKSDFAAAMIEM--ADISPLTGTAG 172 (182)
Q Consensus 141 ~~~A~~~~~F~~~Fa~Am~KM--g~i~vltG~~G 172 (182)
++||.|+++||++|++||+|| +.+||++--.|
T Consensus 368 ~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 368 RRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999 68998875444
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.4e-35 Score=250.07 Aligned_cols=123 Identities=31% Similarity=0.468 Sum_probs=109.5
Q ss_pred hhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCC
Q 042518 15 LIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGG 94 (182)
Q Consensus 15 ~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~ 94 (182)
+|.+..++.+||.|+.++++|++.|+++||+++|||+|+||||||++||... . | .+
T Consensus 121 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~--~-~---------------------~g 176 (253)
T cd00691 121 DPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKERS--G-Y---------------------DG 176 (253)
T ss_pred cccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccCC--C-C---------------------CC
Confidence 4555567788999999999999999999999999999999999999999431 0 1 00
Q ss_pred CCCCCCCCCCCCCccchHHHHHHhhccc--------CccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCCC
Q 042518 95 DSNLSPLDLVTPRSFDNNYFKNLVQKKG--------LLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISP 166 (182)
Q Consensus 95 ~~~~~~lD~~Tp~~fDn~Yy~~l~~~~g--------lL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~v 166 (182)
.+ ..||.+|||+||++++.++| +|+||++|+.|++|+.+|+.||.|+++|+++|++||+||++|+|
T Consensus 177 --~~----~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v 250 (253)
T cd00691 177 --PW----TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGV 250 (253)
T ss_pred --CC----CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCC
Confidence 11 15899999999999999999 99999999999999999999999999999999999999999998
Q ss_pred C
Q 042518 167 L 167 (182)
Q Consensus 167 l 167 (182)
.
T Consensus 251 ~ 251 (253)
T cd00691 251 P 251 (253)
T ss_pred C
Confidence 5
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.2e-35 Score=248.26 Aligned_cols=118 Identities=30% Similarity=0.509 Sum_probs=105.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCC
Q 042518 20 QCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLS 99 (182)
Q Consensus 20 ~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~ 99 (182)
.++++||+|+.++++|++.|++|||+.+|||||+||||||++||. |.- .+..
T Consensus 127 ~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~----r~g----------------------~~g~-- 178 (251)
T PLN02879 127 PPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE----RSG----------------------FEGA-- 178 (251)
T ss_pred CcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc----ccc----------------------CCCC--
Confidence 456789999999999999999999999999999999999999994 320 0111
Q ss_pred CCCCCCCCccchHHHHHHhhc--ccC--ccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCCCC
Q 042518 100 PLDLVTPRSFDNNYFKNLVQK--KGL--LASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPL 167 (182)
Q Consensus 100 ~lD~~Tp~~fDn~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~vl 167 (182)
+| .||.+|||+||++++.+ +|+ |.||++|+.|++|+.+|++||.||++||++|++||+||++|++.
T Consensus 179 -~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 179 -WT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred -CC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 34 58999999999999999 898 67999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.8e-35 Score=254.69 Aligned_cols=130 Identities=27% Similarity=0.407 Sum_probs=115.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCC
Q 042518 20 QCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLS 99 (182)
Q Consensus 20 ~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~ 99 (182)
.+++.||+|+.++++|++.|++|||+.+|||+|+||||||++|. .||+++ .+
T Consensus 138 ~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~---------~Dps~~-------------------g~ 189 (328)
T cd00692 138 APDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDF---------VDPSIA-------------------GT 189 (328)
T ss_pred CcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCC---------CCCCCC-------------------CC
Confidence 45668999999999999999999999999999999999999982 377764 15
Q ss_pred CCCCCCCCccchHHHHHHh-hccc-------------------CccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHH
Q 042518 100 PLDLVTPRSFDNNYFKNLV-QKKG-------------------LLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMI 159 (182)
Q Consensus 100 ~lD~~Tp~~fDn~Yy~~l~-~~~g-------------------lL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~ 159 (182)
++| .||.+|||+||++++ .+++ +|+||++|+.|++|+.+|++||.||++|+++|++||+
T Consensus 190 p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~ 268 (328)
T cd00692 190 PFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAML 268 (328)
T ss_pred CCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 788 599999999999987 5666 4999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcccccCccCC
Q 042518 160 EMADISPLTGTAGQIRRVCNLVN 182 (182)
Q Consensus 160 KMg~i~vltG~~GeIR~~C~~vN 182 (182)
||++|||. +..+.+|+.|+
T Consensus 269 KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 269 KLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred HHHcCCCC----cchhccCcccC
Confidence 99999875 34778999875
No 8
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1e-35 Score=247.85 Aligned_cols=124 Identities=46% Similarity=0.800 Sum_probs=109.5
Q ss_pred HhhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC-CCCCCCHHHHHHhhhcCCCC
Q 042518 14 LLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN-NQSDIDAGFASTRRRQCPAS 92 (182)
Q Consensus 14 ~~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~-~dp~~d~~~~~~L~~~Cp~~ 92 (182)
++|+..++ .+||.|+.++++|++.|++|||+.+|||||+||||||++||.+|. |+|. .||+|++.|+.. .| ..
T Consensus 106 ~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~dp~~d~~~~~~---~C-~~ 179 (230)
T PF00141_consen 106 TVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPPDPTMDPGYAGQ---NC-NS 179 (230)
T ss_dssp SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSSGTTSTHHHHHH---SS-ST
T ss_pred cccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceecccc-cccccccccccccccee---cc-CC
Confidence 35566666 679999999999999999999999999999999999999999999 9985 589999999988 99 43
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhC
Q 042518 93 GGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKN 146 (182)
Q Consensus 93 ~~~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~ 146 (182)
+++ +.+++| ||.+|||+||++++.++|+|.||++|+.|++|+.+|++||+|
T Consensus 180 ~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 180 GGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp SGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred Ccc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 333 378899 999999999999999999999999999999999999999976
No 9
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.4e-34 Score=242.09 Aligned_cols=118 Identities=36% Similarity=0.578 Sum_probs=104.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHH-CCCChhhhhhhhcccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCC
Q 042518 20 QCEAQLSPTFYGLDTLISTFAT-KGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNL 98 (182)
Q Consensus 20 ~a~~~LP~p~~~~~~l~~~F~~-~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~ 98 (182)
.++++||.|+.++++|++.|++ +||+++|||+|+||||||++|| .|+. . .+
T Consensus 126 ~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~~-----~-----------------~g-- 177 (250)
T PLN02364 126 PPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHK----DRSG-----F-----------------EG-- 177 (250)
T ss_pred cccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccC----CCCC-----C-----------------CC--
Confidence 3456799999999999999997 5999999999999999999999 3431 0 00
Q ss_pred CCCCCCCCCccchHHHHHHhhc--ccCcc--chhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCCCC
Q 042518 99 SPLDLVTPRSFDNNYFKNLVQK--KGLLA--SDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPL 167 (182)
Q Consensus 99 ~~lD~~Tp~~fDn~Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~vl 167 (182)
+++ .||.+|||+||++++.+ +|+|. |||+|+.|++|+.+|+.||.|++.|+++|++||+|||+|++-
T Consensus 178 -~~~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 178 -AWT-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred -CCC-CCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 112 68999999999999999 89976 999999999999999999999999999999999999999974
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.3e-33 Score=258.70 Aligned_cols=143 Identities=23% Similarity=0.275 Sum_probs=129.3
Q ss_pred CCCCCCCCHHHHHHHHHHCCCChhhhhhhh-cccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCC--C-CCCCC
Q 042518 24 QLSPTFYGLDTLISTFATKGFSARDLVALS-GAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASG--G-DSNLS 99 (182)
Q Consensus 24 ~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~--~-~~~~~ 99 (182)
.+|.|..++++|++.|++||||.+|||||+ ||||||++||.++.+|+- +||.+++.|+..|+..||... + +....
T Consensus 218 ~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg-~dP~~~~~~~~gLg~~c~~~~g~g~dt~~s 296 (716)
T TIGR00198 218 GHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIG-PDPEGAPIEEQGLGWHNQYGKGVGRDTMTS 296 (716)
T ss_pred CCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCC-CCCCcCHHHHHHhcccCCCCCCCCCCcccc
Confidence 699999999999999999999999999995 999999999999999996 799999999999999998532 2 22245
Q ss_pred CCC---CCCCCccchHHHHHHhhc----------------------------------ccCccchhhhhcCcchHHHHHH
Q 042518 100 PLD---LVTPRSFDNNYFKNLVQK----------------------------------KGLLASDQVLFSGRSTDSIVAE 142 (182)
Q Consensus 100 ~lD---~~Tp~~fDn~Yy~~l~~~----------------------------------~glL~SD~~L~~d~~t~~~V~~ 142 (182)
.+| ..||.+|||+||++|+.+ +++|.||++|..|++++++|+.
T Consensus 297 glDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~ 376 (716)
T TIGR00198 297 GLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRR 376 (716)
T ss_pred cCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHH
Confidence 677 479999999999999975 7899999999999999999999
Q ss_pred HhhChhHHHHHHHHHHHHHhc--CCCC
Q 042518 143 YSKNCSKFKSDFAAAMIEMAD--ISPL 167 (182)
Q Consensus 143 ~A~~~~~F~~~Fa~Am~KMg~--i~vl 167 (182)
||.|++.|+++|++||+||++ +|++
T Consensus 377 yA~d~~~F~~dFA~Aw~KL~~~d~gp~ 403 (716)
T TIGR00198 377 FLREPDYFAEAFAKAWFKLTHRDMGPK 403 (716)
T ss_pred HhcCHHHHHHHHHHHHHHHcccccCch
Confidence 999999999999999999995 5543
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.1e-33 Score=257.89 Aligned_cols=144 Identities=23% Similarity=0.311 Sum_probs=129.3
Q ss_pred CCCCCCCCHHHHHHHHHHCCCChhhhhhhh-cccccccccccccCCCCCCCCCCCCHHHHHHhh--hcCCCCCCC-CCCC
Q 042518 24 QLSPTFYGLDTLISTFATKGFSARDLVALS-GAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRR--RQCPASGGD-SNLS 99 (182)
Q Consensus 24 ~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~--~~Cp~~~~~-~~~~ 99 (182)
.+|+|..++.+|++.|++|||+.+|+|||+ ||||||++||..+..|+. +||.+++.++..|. +.||.+.+. ....
T Consensus 222 glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlg-pdP~~a~~~~qgLgw~~~c~~g~g~dt~ts 300 (726)
T PRK15061 222 GNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVG-PEPEAAPIEEQGLGWKNSYGSGKGADTITS 300 (726)
T ss_pred CCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccC-CCCCcCHHHHHhccccccCCCCCCCCCccc
Confidence 499999999999999999999999999995 999999999999999996 79999999999985 899975333 3345
Q ss_pred CCC---CCCCCccchHHHHHHhhc------------------------------------ccCccchhhhhcCcchHHHH
Q 042518 100 PLD---LVTPRSFDNNYFKNLVQK------------------------------------KGLLASDQVLFSGRSTDSIV 140 (182)
Q Consensus 100 ~lD---~~Tp~~fDn~Yy~~l~~~------------------------------------~glL~SD~~L~~d~~t~~~V 140 (182)
.+| ..||.+|||+||++|+.+ +++|+||++|..||+++++|
T Consensus 301 GldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV 380 (726)
T PRK15061 301 GLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKIS 380 (726)
T ss_pred cCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHH
Confidence 677 479999999999999985 68999999999999999999
Q ss_pred HHHhhChhHHHHHHHHHHHHHh--cCCCCC
Q 042518 141 AEYSKNCSKFKSDFAAAMIEMA--DISPLT 168 (182)
Q Consensus 141 ~~~A~~~~~F~~~Fa~Am~KMg--~i~vlt 168 (182)
++||.|+++|+++|++||+||. .+|+++
T Consensus 381 ~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 381 RRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred HHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 9999999999999999999994 466554
No 12
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.96 E-value=6.2e-30 Score=215.19 Aligned_cols=117 Identities=38% Similarity=0.539 Sum_probs=105.3
Q ss_pred hccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhh-ccccc-ccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCC
Q 042518 19 TQCEAQLSPTFYGLDTLISTFATKGFSARDLVALS-GAHTI-GRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDS 96 (182)
Q Consensus 19 ~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTi-G~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~ 96 (182)
.++...+|.|+.+++++++.|+++||+++|||||+ ||||+ |++||..+..|+ |
T Consensus 121 p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~------------------~------- 175 (255)
T cd00314 121 PDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEG------------------S------- 175 (255)
T ss_pred CCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCccc------------------C-------
Confidence 44555677777789999999999999999999999 99999 999998877653 2
Q ss_pred CCCCCCCCCCCccchHHHHHHhhcc----------------cCccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHH
Q 042518 97 NLSPLDLVTPRSFDNNYFKNLVQKK----------------GLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIE 160 (182)
Q Consensus 97 ~~~~lD~~Tp~~fDn~Yy~~l~~~~----------------glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~K 160 (182)
.+|..||.+|||+||++++.++ ++|.||++|+.|++|+.+|+.||.|+++|+++|++||+|
T Consensus 176 ---~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~K 252 (255)
T cd00314 176 ---GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIK 252 (255)
T ss_pred ---CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 2344799999999999999998 999999999999999999999999999999999999999
Q ss_pred Hhc
Q 042518 161 MAD 163 (182)
Q Consensus 161 Mg~ 163 (182)
|++
T Consensus 253 m~~ 255 (255)
T cd00314 253 MVN 255 (255)
T ss_pred HcC
Confidence 984
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.85 E-value=5.3e-21 Score=161.54 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=95.7
Q ss_pred CCCCCCCCHHHHHHHHHHCCCChhhhhhhhc-ccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCCCCC
Q 042518 24 QLSPTFYGLDTLISTFATKGFSARDLVALSG-AHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLD 102 (182)
Q Consensus 24 ~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD 102 (182)
.||.|+.++++|++.|++|||+.+|||+|+| |||||++||..|.++.- |.. ..+...|+|
T Consensus 136 glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---~g~----------------~~~~~~p~d 196 (264)
T cd08201 136 GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP---PGS----------------VPDTVLQFF 196 (264)
T ss_pred cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcC---Ccc----------------ccCCCCCCC
Confidence 4999999999999999999999999999995 99999999998877642 211 001235788
Q ss_pred CCCCCccchHHHHHHhhccc----------CccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhc
Q 042518 103 LVTPRSFDNNYFKNLVQKKG----------LLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMAD 163 (182)
Q Consensus 103 ~~Tp~~fDn~Yy~~l~~~~g----------lL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~ 163 (182)
.||.+|||+||.+++.+.. -+.||..++....-. -++..| +++.|....+..+.||.+
T Consensus 197 -stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 197 -DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred -CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 6999999999999998752 367999999754433 246667 789999999999999963
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.78 E-value=4.8e-19 Score=151.50 Aligned_cols=103 Identities=20% Similarity=0.322 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHCCCChhhhhhhhccc-ccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCcc
Q 042518 31 GLDTLISTFATKGFSARDLVALSGAH-TIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSF 109 (182)
Q Consensus 31 ~~~~l~~~F~~~Gl~~~dlVaLsGaH-TiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~f 109 (182)
..+.|++.|.++||+.+|||||+||| ++|..|..+ + .+.|+ .+|.+|
T Consensus 166 ~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-----~-----------------------~G~wT----~~p~~f 213 (297)
T cd08200 166 PEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-----K-----------------------HGVFT----DRPGVL 213 (297)
T ss_pred HHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-----C-----------------------CCCCc----CCCCcc
Confidence 34789999999999999999999997 688866321 1 12244 589999
Q ss_pred chHHHHHHhhc--------------------cc-----CccchhhhhcCcchHHHHHHHhhC--hhHHHHHHHHHHHHHh
Q 042518 110 DNNYFKNLVQK--------------------KG-----LLASDQVLFSGRSTDSIVAEYSKN--CSKFKSDFAAAMIEMA 162 (182)
Q Consensus 110 Dn~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~KMg 162 (182)
||.||++|+.- .| .+.+|.+|.+|++.|++|+.||.| +++||++|++||.|+.
T Consensus 214 ~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klm 293 (297)
T cd08200 214 TNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVM 293 (297)
T ss_pred ccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 99999999951 01 167899999999999999999998 9999999999999999
Q ss_pred cCC
Q 042518 163 DIS 165 (182)
Q Consensus 163 ~i~ 165 (182)
+++
T Consensus 294 eld 296 (297)
T cd08200 294 NLD 296 (297)
T ss_pred hcC
Confidence 874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.64 E-value=4.1e-16 Score=146.44 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHCCCChhhhhhhhcc-cccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCcc
Q 042518 31 GLDTLISTFATKGFSARDLVALSGA-HTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSF 109 (182)
Q Consensus 31 ~~~~l~~~F~~~Gl~~~dlVaLsGa-HTiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~f 109 (182)
....|++.|..+||+..|||||+|| |++|..|..+. .+.|+ .+|.+|
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~----------------------------~G~~T----~~p~~f 626 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK----------------------------HGVFT----DRVGVL 626 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC----------------------------CCCCc----CCCCcc
Confidence 3567899999999999999999999 59999874211 12233 479999
Q ss_pred chHHHHHHhhcc--------------------c---Cc--cchhhhhcCcchHHHHHHHhhCh--hHHHHHHHHHHHHHh
Q 042518 110 DNNYFKNLVQKK--------------------G---LL--ASDQVLFSGRSTDSIVAEYSKNC--SKFKSDFAAAMIEMA 162 (182)
Q Consensus 110 Dn~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~t~~~V~~~A~~~--~~F~~~Fa~Am~KMg 162 (182)
||.||++|+.-. | ++ .+|.+|.+|++.|++|+.||+|+ ++|+++|++||.|+.
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm 706 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVM 706 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999998610 2 22 67999999999999999999997 899999999999999
Q ss_pred cCCC
Q 042518 163 DISP 166 (182)
Q Consensus 163 ~i~v 166 (182)
+++-
T Consensus 707 ~ldr 710 (716)
T TIGR00198 707 NLDR 710 (716)
T ss_pred hCCC
Confidence 9863
No 16
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.6e-15 Score=136.06 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=109.5
Q ss_pred hhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhh-cccccccccccccCCCCCCCCCCCCHHHHHH--hhhcCCCCCC
Q 042518 18 STQCEAQLSPTFYGLDTLISTFATKGFSARDLVALS-GAHTIGRAQCAFFRDRIYNNQSDIDAGFAST--RRRQCPASGG 94 (182)
Q Consensus 18 ~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~a~c~~f~~Rl~~~dp~~d~~~~~~--L~~~Cp~~~~ 94 (182)
...++ ..|+|-.+..+++..|++|+++.+|.|||+ ||||+|++|...-..-+- ++|.-.+--... +...|..+.+
T Consensus 229 PEGpn-g~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg-~ePe~a~ie~qGlGW~~~~g~G~G 306 (730)
T COG0376 229 PEGPN-GNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVG-PEPEAAPIEQQGLGWANTYGSGKG 306 (730)
T ss_pred CCCCC-CCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcC-CCccccchhhhccccccccCCCcC
Confidence 34444 589999999999999999999999999997 799999999765322222 455433222222 3445554433
Q ss_pred CCCC-CCCC---CCCCCccchHHHHHHhhcc-----------------------------------cCccchhhhhcCcc
Q 042518 95 DSNL-SPLD---LVTPRSFDNNYFKNLVQKK-----------------------------------GLLASDQVLFSGRS 135 (182)
Q Consensus 95 ~~~~-~~lD---~~Tp~~fDn~Yy~~l~~~~-----------------------------------glL~SD~~L~~d~~ 135 (182)
.+++ ..+. ..||++|||.||.+|+... .+|.+|.+|--||.
T Consensus 307 ~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~ 386 (730)
T COG0376 307 PDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPE 386 (730)
T ss_pred cccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChH
Confidence 3221 1121 1589999999999998531 47999999999999
Q ss_pred hHHHHHHHhhChhHHHHHHHHHHHHHhcC
Q 042518 136 TDSIVAEYSKNCSKFKSDFAAAMIEMADI 164 (182)
Q Consensus 136 t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i 164 (182)
.+++.++|..|++.|.+.|++||.||..-
T Consensus 387 Y~kIs~rf~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 387 YEKISRRFLEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999764
No 17
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.60 E-value=1.7e-15 Score=141.79 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=85.2
Q ss_pred HHHHHHHHHHCCCChhhhhhhhccc-ccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccc
Q 042518 32 LDTLISTFATKGFSARDLVALSGAH-TIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFD 110 (182)
Q Consensus 32 ~~~l~~~F~~~Gl~~~dlVaLsGaH-TiG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~fD 110 (182)
-+.|++.|..+||+..|||||+||| ++|..|-.+. ...|+ ..|.+||
T Consensus 592 e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~----------------------------~G~~T----~~p~~fs 639 (726)
T PRK15061 592 EELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK----------------------------HGVFT----DRPGVLT 639 (726)
T ss_pred HHHHHHHHHhCCCChHHHhheecchhhcccCCCCCC----------------------------CCCCc----CCCCccc
Confidence 4889999999999999999999997 7788663211 11233 4799999
Q ss_pred hHHHHHHhhc----------c----------c---C--ccchhhhhcCcchHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Q 042518 111 NNYFKNLVQK----------K----------G---L--LASDQVLFSGRSTDSIVAEYSKN--CSKFKSDFAAAMIEMAD 163 (182)
Q Consensus 111 n~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~KMg~ 163 (182)
|.||++|+.- . | . +.+|..|.+|++.|++|+.||.| +++|+++|++||.|+.+
T Consensus 640 NdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvme 719 (726)
T PRK15061 640 NDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMN 719 (726)
T ss_pred cHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 9999999941 1 1 1 46899999999999999999998 99999999999999999
Q ss_pred CC
Q 042518 164 IS 165 (182)
Q Consensus 164 i~ 165 (182)
++
T Consensus 720 ld 721 (726)
T PRK15061 720 LD 721 (726)
T ss_pred CC
Confidence 86
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.094 Score=49.04 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=66.4
Q ss_pred HHHHHHHHHHCCCChhhhhhhhcccc-cccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccc
Q 042518 32 LDTLISTFATKGFSARDLVALSGAHT-IGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFD 110 (182)
Q Consensus 32 ~~~l~~~F~~~Gl~~~dlVaLsGaHT-iG~a~c~~f~~Rl~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~fD 110 (182)
-.-|++.=+-.+|+.-||++|.|+-- +|..+-. ..-.+.- ..|..+.
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~------------------------------s~~GVfT--~~pg~Lt 643 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGG------------------------------SKHGVFT--DRPGVLT 643 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcceEeeccCCCC------------------------------Cccceec--cCccccc
Confidence 35567777788999999999997733 3332210 0001111 2466677
Q ss_pred hHHHHHHhhc----------c----------cC-----ccchhhhhcCcchHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Q 042518 111 NNYFKNLVQK----------K----------GL-----LASDQVLFSGRSTDSIVAEYSKN--CSKFKSDFAAAMIEMAD 163 (182)
Q Consensus 111 n~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~KMg~ 163 (182)
|.||.||+.= + |- -..|...-+++..|.+.+-||++ ++.|.++|..||.|..+
T Consensus 644 ndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn 723 (730)
T COG0376 644 NDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMN 723 (730)
T ss_pred chhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 7777777631 1 21 12455555566778888999964 78899999999999987
Q ss_pred CC
Q 042518 164 IS 165 (182)
Q Consensus 164 i~ 165 (182)
++
T Consensus 724 ~D 725 (730)
T COG0376 724 LD 725 (730)
T ss_pred cc
Confidence 75
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=66.45 E-value=5.5 Score=28.17 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 042518 149 KFKSDFAAAMIEMADISP 166 (182)
Q Consensus 149 ~F~~~Fa~Am~KMg~i~v 166 (182)
....+|..+|.||+.+|-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356799999999998863
No 20
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=65.53 E-value=3.2 Score=32.16 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHCCCChhhh-hhhhccccccccc
Q 042518 29 FYGLDTLISTFATKGFSARDL-VALSGAHTIGRAQ 62 (182)
Q Consensus 29 ~~~~~~l~~~F~~~Gl~~~dl-VaLsGaHTiG~a~ 62 (182)
.+++.+.+-.|++|||++.++ |.|=.+|-||+++
T Consensus 30 ~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 30 ADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 356788889999999999998 6777999999876
No 21
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=34.60 E-value=28 Score=24.47 Aligned_cols=25 Identities=44% Similarity=0.530 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCChhhhhhhhcccc
Q 042518 33 DTLISTFATKGFSARDLVALSGAHT 57 (182)
Q Consensus 33 ~~l~~~F~~~Gl~~~dlVaLsGaHT 57 (182)
+.|-..|.+.||+..||-.++.+.-
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~~ 35 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEADG 35 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHGG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhccC
Confidence 5788899999999999999986653
No 22
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=33.89 E-value=63 Score=22.07 Aligned_cols=41 Identities=12% Similarity=0.407 Sum_probs=26.3
Q ss_pred HHHHhHhhchhcc--ccCCCCCCC-CHHHHHHHHHHCCCChhhh
Q 042518 9 FVSILLLIISTQC--EAQLSPTFY-GLDTLISTFATKGFSARDL 49 (182)
Q Consensus 9 ~~~~~~~~~~~~a--~~~LP~p~~-~~~~l~~~F~~~Gl~~~dl 49 (182)
++.+++.|..+.| ...-|.... +.+++.+....+|.+..++
T Consensus 5 ~~a~~~~a~~A~A~~~~~~p~~~~~~~~~~~~~l~~~G~~v~~v 48 (83)
T PF13670_consen 5 ALAAALLAAPAFASDDSDAPPADWLSIEQAVAKLEAQGYQVREV 48 (83)
T ss_pred HHHHHHHhHHhcCCCCCCCCccccCCHHHHHHHHHhcCCceEEE
Confidence 3444444444444 334555554 6999999999999876654
No 23
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=31.28 E-value=19 Score=29.27 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=10.2
Q ss_pred cccccccccccc
Q 042518 54 GAHTIGRAQCAF 65 (182)
Q Consensus 54 GaHTiG~a~c~~ 65 (182)
=||+.|..||++
T Consensus 132 lGH~~GL~HC~N 143 (181)
T COG1913 132 LGHLLGLSHCPN 143 (181)
T ss_pred hhhhcCcccCCC
Confidence 479999999974
No 24
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=28.84 E-value=50 Score=25.79 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.0
Q ss_pred CC-CCCCCHHHHHHHHHH--CCCChhhhhhhhcccc
Q 042518 25 LS-PTFYGLDTLISTFAT--KGFSARDLVALSGAHT 57 (182)
Q Consensus 25 LP-~p~~~~~~l~~~F~~--~Gl~~~dlVaLsGaHT 57 (182)
.. .|+.++++|++.+.. .+++.+|.+.+..+|.
T Consensus 28 ~~~rPf~s~~~L~~a~~~~~~~~~~~~~~~~l~aHP 63 (159)
T PF09349_consen 28 AAARPFASVDALIAAADEAVRSLSEEDKLEALRAHP 63 (159)
T ss_dssp HCGGS-SSHHHHHHHHHHHHHCS-HHHHHHHHHTS-
T ss_pred hccCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHhCc
Confidence 45 799999999999996 5999999999999986
No 25
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=27.73 E-value=30 Score=24.79 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=17.4
Q ss_pred HHhhChhHHHHHHHHHHHHHhc
Q 042518 142 EYSKNCSKFKSDFAAAMIEMAD 163 (182)
Q Consensus 142 ~~A~~~~~F~~~Fa~Am~KMg~ 163 (182)
.|-..|.+||+.|+..+-|=+.
T Consensus 37 rY~~~QskFFe~~A~~~tkR~~ 58 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTKRGL 58 (90)
T ss_pred CCChHHHHHHHHHhhhhhHHHH
Confidence 3777899999999998877543
No 26
>PLN02161 beta-amylase
Probab=24.04 E-value=85 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHhhChhHHHHHHHHHHHHHh-----cCCCCCCCCCcccc
Q 042518 140 VAEYSKNCSKFKSDFAAAMIEMA-----DISPLTGTAGQIRR 176 (182)
Q Consensus 140 V~~~A~~~~~F~~~Fa~Am~KMg-----~i~vltG~~GeIR~ 176 (182)
++.|.. |.+.|...|.-.- +|.|=-|..||.|=
T Consensus 235 lq~Y~D----fm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 235 VQCYED----FMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 456663 6666666666643 66777789999984
No 27
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.92 E-value=83 Score=27.67 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCCCCCCHHHHHHHHH--HCCCChhhhhhhhcc
Q 042518 24 QLSPTFYGLDTLISTFA--TKGFSARDLVALSGA 55 (182)
Q Consensus 24 ~LP~p~~~~~~l~~~F~--~~Gl~~~dlVaLsGa 55 (182)
+.|.|..+-.++-++-. .+=+...|+|+|+|.
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCC
Confidence 57888888777655444 344888999999985
No 28
>COG3652 Predicted outer membrane protein [Function unknown]
Probab=23.28 E-value=1.3e+02 Score=24.16 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=24.7
Q ss_pred CCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhC--hhHHHHHHHHHHHHH
Q 042518 106 PRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKN--CSKFKSDFAAAMIEM 161 (182)
Q Consensus 106 p~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~KM 161 (182)
+.-||+.|+.+.+.. +..+-....+|+.+ .+.=.+.|++.+.+|
T Consensus 109 g~~FDk~Y~~~~va~------------Hq~~~~l~~~~~~~~~an~~L~~~aet~L~~ 154 (170)
T COG3652 109 GRGFDKAYAENMVAY------------HQQTLNLLETYAADSAANAELQSFAETALPR 154 (170)
T ss_pred cccccHHHHHHHHHH------------HHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence 668999999887654 23344444545532 223344555555443
No 29
>PHA03420 E4 protein; Provisional
Probab=22.80 E-value=46 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=13.1
Q ss_pred ccchHHHHHHhhccc
Q 042518 108 SFDNNYFKNLVQKKG 122 (182)
Q Consensus 108 ~fDn~Yy~~l~~~~g 122 (182)
-||..||+.++.|+.
T Consensus 14 PWdTPYYrrlldg~~ 28 (137)
T PHA03420 14 PWDTPYYRRLLDGRA 28 (137)
T ss_pred CcccHHHHHHHhhhh
Confidence 599999999999864
No 30
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=21.73 E-value=72 Score=21.17 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcC
Q 042518 151 KSDFAAAMIEMADI 164 (182)
Q Consensus 151 ~~~Fa~Am~KMg~i 164 (182)
+++|.++|+.|..-
T Consensus 5 ~~DFr~SM~EMI~~ 18 (59)
T PF04844_consen 5 YEDFRESMVEMIEE 18 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999999754
Done!