BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042521
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYD 112
+ Y+VL V+P AT E+K AYR LA YHPD + N G F +I AYE LSD R +YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-RDFIEIHNAYETLSDPTARAVYDM 113
Y+VL V+P A+ +E+K AYR +A +HPD + +G F +I AYE LSD R +YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDL-SGNGRDFIEIHNAYETLSDPTARAVYD 112
LY++L V P+A E+K YR A YHPD +G+ F EI A+E L+DP R +YD
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 113 M 113
Sbjct: 69 Q 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGR---DFIEIHNAYETLSDPTARAVYD 112
Y +L V+PT + IKTAYR LA+ YHPD+S F ++ A+E L D RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 113 MSL-------VGRRRTTRTASF 127
GR+R T S+
Sbjct: 91 QLWQHRNDPGFGRQRQTHEQSY 112
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPT 106
+G SLY VL ++ AT +IK +YR LA YHPD + + + F EI+NA+ L+D T
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 107 ARAVYD 112
R +YD
Sbjct: 75 KRNIYD 80
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
YE+L V TA EI+ AY+ LA YHPD + ++ F EI AYE L+D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 110 VYDM 113
YD
Sbjct: 64 AYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
YE+L V TA EI+ AY+ LA YHPD + ++ F EI AYE L+D RA Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 112 DM 113
D
Sbjct: 66 DQ 67
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLS----GNGRDFIEIHNAYETLSDPTARAVY 111
Y ++ V+PT + IKTAYR LA+ YHPD+S R F E+ A+E LSD RA Y
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 112 DM 113
D
Sbjct: 67 DQ 68
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
YE+L V TA EI+ AY+ LA YHPD + ++ F EI AYE L+D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 110 VYDM 113
YD
Sbjct: 64 AYDQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSDP 105
G+ G Y++L V A+ EIK AY LAK YHPD + + F ++ AYE LSD
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 106 TARAVYD 112
R YD
Sbjct: 64 VKRKQYD 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
YEVL V+ +A+ +IK AYR LA +HPD + + ++ F + AYE LSD R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 111 YD 112
YD
Sbjct: 72 YD 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFI-----EIHNAYETLSDPTAR 108
S YE+L V +A+ +IK AYR A +HPD + + ++F E+ AYE LSD R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 109 AVYD 112
+YD
Sbjct: 63 EIYD 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
Y VL V TA+ ++IK AY+ LA+ +HPD + G FI+I AYE LS+ R YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTAR 108
G Y+ L + A+ EIK AYR A YHPD + G F EI AY+ LSDP R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 109 AVYD 112
++D
Sbjct: 62 EIFD 65
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
YEVL V A+ IK AYR LA +HPD + ++ F ++ AYE LSD R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 111 YD 112
YD
Sbjct: 72 YD 73
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPT 106
G+ G YE+L V A+ ++K AYR LA +HPD + G F I AY LS+P
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 107 ARAVYDM 113
R YD
Sbjct: 64 KRKQYDQ 70
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSDPTARA 109
+ Y +L V TA+ EI+ A++ LA HPD + N DF++I+ AYE L D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 110 VYD 112
YD
Sbjct: 63 KYD 65
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYD 112
Y++L V +A+ +IK A+ LA YHPD + + F EI AYETLSD R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGR----DFIEIHNAYETLSDPTARA 109
+ Y +L V TA+ EI+ A++ LA HPD + N DF++I+ AYE L D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 110 VYD 112
YD
Sbjct: 82 KYD 84
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPD----------LSGNGRDFIEIHNAYETLSDP 105
Y +L +P+A +S++K Y+ L +YHPD + + FIEI A++ L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 106 TARAVYDMSLVG 117
+ YD+ G
Sbjct: 79 ETKKKYDLQRSG 90
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----------RDFIEIHNAYETLSDP 105
Y +L +P+A IS++K Y+ L +YHPD + FIEI A++ L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 106 TARAVYDMS 114
+ YD+
Sbjct: 73 ETKREYDLQ 81
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.4 bits (98), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTAR 108
Y++L V+ A EI AYR LA +HPD N + FI+I A E LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 109 AVYD 112
+D
Sbjct: 445 KKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
+LY++L V TAT ++IK AY +YHPD + + F I AY L T R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 110 VYDMSLV 116
YD L+
Sbjct: 78 KYDRGLL 84
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTAR 108
Y++L V+ A EI AYR LA +HPD N + FI+I A E LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 109 AVYD 112
+D
Sbjct: 445 KKFD 448
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
Query: 68 SEIKTAYRSLAKVYHPD--LSGNGRDFI-------EIHNAYETLSDPTARAVYDMSLVG 117
S + + +R+L K +HPD + + RD + +I++AY+TL DP RA Y +SL G
Sbjct: 21 SLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 56 YEVLRV-EPTATISEIKTAYRSLAKVYHPDLSGNGRD-------FIEIHNAYETLSDPTA 107
Y+VL V ++ AYR+LA+ +HPD N + F I AYETL D A
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 108 RAVYDMSL 115
+ YD L
Sbjct: 78 KTNYDYYL 85
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 63 PTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIE-IHNAYETLSDPTARAVYDMSLV 116
P TI S ++ YR L +HPD++ G + ++ AY TL DP R+ Y + L+
Sbjct: 26 PIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 82
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 63 PTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIE-IHNAYETLSDPTARAVYDMSLV 116
P TI S ++ YR L +HPD++ G + ++ AY TL DP R+ Y + L+
Sbjct: 18 PIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 74
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 56 YEVLRVEPTATISEIKTAYRSLAKVYHPD 84
+++L V+P A+ E+ AYR LA + HPD
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 30.0 bits (66), Expect = 0.53, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 63 PTATISEIKTAYRSLAKVYHPDLSGNGRDFIE 94
P AT +E K A+R++ + Y P +G D++E
Sbjct: 438 PNATPAERKQAWRAIERKYMPTKDYDGNDYLE 469
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQGNLCRCTGYRPILQG 158
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 159
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQGNLCRCTGYRPILQG 158
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQGNLCRCTGYRPILQG 158
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 159
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 158
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 158
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 159
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQG 159
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQG 159
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 49 PGTGGSLYEVLRVEPTATISEIKTAYR-SLAKV--YHPDLSG 87
PG S+Y +LR +P T+ EI+ A++ +L + Y P L G
Sbjct: 118 PGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQG 159
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 85 LSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETD 144
L+ N +F + Y S A+A++D + + + G G G++ + +W+ D
Sbjct: 226 LAINYMNFKDTDPQYAAKSLDYAKALFDFA----EKNPKGVVQGEDGPKGYYGSSKWQDD 281
Query: 145 QCW 147
CW
Sbjct: 282 YCW 284
>pdb|1RWA|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWC|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWF|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWG|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWH|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
Length = 757
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN 88
G+ Y V+R + TA E KTA + A + P ++G+
Sbjct: 643 GNKYSVIRNDATAQSVEFKTAKTTAATFWKPGMAGD 678
>pdb|1RW9|A Chain A, Crystal Structure Of The Arthrobacter Aurescens
Chondroitin Ac Lyase
Length = 757
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN 88
G+ Y V+R + TA E KTA + A + P ++G+
Sbjct: 643 GNKYSVIRNDATAQSVEFKTAKTTAATFWKPGMAGD 678
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 68 SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAV 110
S +KT R+ V HP + GR ++++ N Y+ LS+ + A+
Sbjct: 690 SILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAI 732
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 68 SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAV 110
S +KT R+ V HP + GR ++++ N Y+ LS+ + A+
Sbjct: 692 SILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAI 734
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 45 PVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEI 95
P +P GG + + K A+ + K+YHP+++ NG ++I
Sbjct: 45 PSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT--KIYHPNINSNGSICLDI 93
>pdb|3SKS|A Chain A, Crystal Structure Of A Putative Oligoendopeptidase F From
Bacillus Anthracis Str. Ames
Length = 567
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 63 PTATISEIKTAYRSLAKVYHPDLSGNGRDFIE 94
P A+ E KTA+R++ K Y P D++E
Sbjct: 441 PEASPEERKTAWRNIEKKYLPHRDYEDNDYLE 472
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN 88
T GSL EVL + +S + A+ SL K+ H DLS N
Sbjct: 471 TVGSL-EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN 507
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 SVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEI 95
S+ P +P GG + + K ++ + K+YHP+++ NG ++I
Sbjct: 37 SIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTT--KIYHPNINANGNICLDI 89
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1SMY|C Chain C, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1SMY|M Chain M, Structural Basis For Transcription Regulation By Alarmone
Ppgpp
pdb|1ZYR|C Chain C, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|1ZYR|M Chain M, Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Streptolydigin
pdb|2A68|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A68|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifabutin
pdb|2A69|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A69|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Rifapentin
pdb|2A6E|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6E|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme
pdb|2A6H|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2A6H|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Sterptolydigin
pdb|2CW0|C Chain C, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2CW0|M Chain M, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme At 3.3 Angstroms Resolution
pdb|2BE5|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2BE5|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Inhibitor Tagetitoxin
pdb|2O5I|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5I|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Elongation Complex
pdb|2O5J|C Chain C, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2O5J|M Chain M, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog
pdb|2PPB|C Chain C, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|2PPB|M Chain M, Crystal Structure Of The T. Thermophilus Rnap Polymerase
Elongation Complex With The Ntp Substrate Analog And
Antibiotic Streptolydigin
pdb|3DXJ|C Chain C, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3DXJ|M Chain M, Crystal Structure Of Thermus Thermophilus Rna Polymerase
Holoenzyme In Complex With The Antibiotic Myxopyronin
pdb|3EQL|C Chain C, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3EQL|M Chain M, Crystal Structure Of The T. Thermophilus Rna Polymerase
Holoenzyme In Complex With Antibiotic Myxopyronin
pdb|3AOH|C Chain C, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|H Chain H, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOH|M Chain M, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
pdb|3AOI|C Chain C, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|H Chain H, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|3AOI|M Chain M, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
pdb|4G7H|C Chain C, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7H|M Chain M, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex
pdb|4G7O|C Chain C, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7O|M Chain M, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 2 Nt Of Rna
pdb|4G7Z|C Chain C, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4G7Z|M Chain M, Crystal Structure Of Thermus Thermophilus Transcription
Initiation Complex Containing 5-Bru At Template-Strand
Position +1
pdb|4GZY|C Chain C, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
pdb|4GZZ|C Chain C, Crystal Structures Of Bacterial Rna Polymerase Paused
Elongation Complexes
Length = 1119
Score = 25.8 bits (55), Expect = 9.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 17 PHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRS 76
P P L ++ G+ R + S+ +P PG GG + +R+ E+K R
Sbjct: 767 PTPEERLLR--SIFGEKARDVKDTSLRVP---PGEGGIVVRTVRLRRGDPGVELKPGVRE 821
Query: 77 LAKVY 81
+ +VY
Sbjct: 822 VVRVY 826
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,796,099
Number of Sequences: 62578
Number of extensions: 182057
Number of successful extensions: 466
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 64
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)