Query 042521
Match_columns 147
No_of_seqs 215 out of 1251
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 5.1E-24 1.1E-28 175.5 8.1 69 52-120 3-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 9.6E-23 2.1E-27 164.9 7.6 71 50-120 13-87 (336)
3 KOG0712 Molecular chaperone (D 99.8 2.8E-20 6E-25 151.7 7.8 68 52-119 3-71 (337)
4 PRK14288 chaperone protein Dna 99.8 1.8E-20 3.9E-25 155.7 6.7 66 52-117 2-71 (369)
5 PTZ00037 DnaJ_C chaperone prot 99.8 2.4E-20 5.1E-25 157.2 7.0 66 52-117 27-92 (421)
6 PRK14296 chaperone protein Dna 99.8 6.3E-20 1.4E-24 152.6 7.0 66 52-117 3-71 (372)
7 PRK14279 chaperone protein Dna 99.8 1.4E-19 3E-24 151.5 6.3 65 52-116 8-76 (392)
8 PRK14286 chaperone protein Dna 99.8 3.6E-19 7.8E-24 148.1 7.1 66 52-117 3-72 (372)
9 PRK14299 chaperone protein Dna 99.8 1.3E-18 2.9E-23 140.4 9.4 66 52-117 3-71 (291)
10 PF00226 DnaJ: DnaJ domain; I 99.8 4.6E-19 1E-23 112.4 5.2 59 54-112 1-64 (64)
11 PRK14282 chaperone protein Dna 99.8 7.2E-19 1.6E-23 146.1 7.0 67 52-118 3-74 (369)
12 PRK14287 chaperone protein Dna 99.8 8E-19 1.7E-23 146.0 7.2 66 52-117 3-71 (371)
13 PRK14298 chaperone protein Dna 99.8 8.3E-19 1.8E-23 146.2 6.8 66 52-117 4-72 (377)
14 PRK14276 chaperone protein Dna 99.8 1E-18 2.2E-23 145.7 6.9 66 52-117 3-71 (380)
15 PRK14283 chaperone protein Dna 99.8 1.2E-18 2.5E-23 145.2 7.1 66 52-117 4-72 (378)
16 PRK14285 chaperone protein Dna 99.8 1.3E-18 2.8E-23 144.4 6.9 65 53-117 3-71 (365)
17 PRK14291 chaperone protein Dna 99.8 1.4E-18 3.1E-23 144.9 7.1 66 52-117 2-70 (382)
18 PRK14277 chaperone protein Dna 99.7 2E-18 4.4E-23 144.2 7.4 66 52-117 4-73 (386)
19 PRK14278 chaperone protein Dna 99.7 1.8E-18 3.9E-23 144.2 6.7 65 53-117 3-70 (378)
20 PRK14280 chaperone protein Dna 99.7 2.2E-18 4.7E-23 143.6 7.1 65 53-117 4-71 (376)
21 PRK14294 chaperone protein Dna 99.7 2.4E-18 5.2E-23 142.8 7.3 66 52-117 3-72 (366)
22 KOG0716 Molecular chaperone (D 99.7 1.9E-18 4.1E-23 136.4 6.1 66 52-117 30-99 (279)
23 PRK14295 chaperone protein Dna 99.7 2.5E-18 5.4E-23 143.8 7.1 62 52-113 8-73 (389)
24 PRK14284 chaperone protein Dna 99.7 2.6E-18 5.6E-23 143.8 7.1 65 53-117 1-69 (391)
25 PRK14301 chaperone protein Dna 99.7 2.8E-18 6E-23 142.8 6.6 66 52-117 3-72 (373)
26 PRK14297 chaperone protein Dna 99.7 2.5E-18 5.4E-23 143.4 6.3 65 53-117 4-72 (380)
27 PRK14281 chaperone protein Dna 99.7 3.8E-18 8.2E-23 143.0 6.7 65 53-117 3-71 (397)
28 PRK10767 chaperone protein Dna 99.7 6.1E-18 1.3E-22 140.6 7.1 66 52-117 3-72 (371)
29 KOG0715 Molecular chaperone (D 99.7 1.2E-17 2.6E-22 134.8 7.2 67 52-118 42-111 (288)
30 KOG0691 Molecular chaperone (D 99.7 1.2E-17 2.6E-22 134.7 6.7 71 52-122 4-78 (296)
31 PRK14300 chaperone protein Dna 99.7 1.1E-17 2.4E-22 139.1 6.6 65 53-117 3-70 (372)
32 KOG0717 Molecular chaperone (D 99.7 1.3E-17 2.8E-22 139.5 6.5 76 49-124 4-84 (508)
33 TIGR02349 DnaJ_bact chaperone 99.7 1.4E-17 3.1E-22 137.5 6.8 65 54-118 1-68 (354)
34 KOG0718 Molecular chaperone (D 99.7 1.2E-17 2.6E-22 139.9 6.2 70 51-120 7-83 (546)
35 PRK14290 chaperone protein Dna 99.7 1.3E-17 2.9E-22 138.4 6.4 65 53-117 3-72 (365)
36 PRK10266 curved DNA-binding pr 99.7 1.7E-17 3.8E-22 134.8 6.8 64 53-116 4-70 (306)
37 PRK14292 chaperone protein Dna 99.7 1.7E-17 3.6E-22 138.0 6.6 65 53-117 2-69 (371)
38 PRK14289 chaperone protein Dna 99.7 2.5E-17 5.3E-22 137.6 7.1 66 52-117 4-73 (386)
39 PRK14293 chaperone protein Dna 99.7 3E-17 6.5E-22 136.7 7.0 65 53-117 3-70 (374)
40 smart00271 DnaJ DnaJ molecular 99.7 4E-17 8.6E-22 102.0 5.4 54 53-106 1-59 (60)
41 PHA03102 Small T antigen; Revi 99.7 3E-17 6.6E-22 121.2 5.1 68 53-120 5-74 (153)
42 PTZ00341 Ring-infected erythro 99.7 1.1E-16 2.4E-21 143.8 7.3 70 51-120 571-643 (1136)
43 cd06257 DnaJ DnaJ domain or J- 99.7 1.5E-16 3.2E-21 97.6 5.5 51 54-104 1-55 (55)
44 KOG0721 Molecular chaperone (D 99.6 3.9E-16 8.4E-21 120.0 6.6 73 49-121 95-171 (230)
45 KOG0719 Molecular chaperone (D 99.6 4.3E-16 9.4E-21 120.9 5.8 67 50-116 11-83 (264)
46 COG2214 CbpA DnaJ-class molecu 99.6 3E-15 6.6E-20 112.8 6.4 64 52-115 5-73 (237)
47 TIGR03835 termin_org_DnaJ term 99.6 3.3E-15 7.1E-20 131.8 7.3 66 53-118 2-70 (871)
48 PRK05014 hscB co-chaperone Hsc 99.6 6.2E-15 1.4E-19 110.9 7.2 66 53-118 1-77 (171)
49 PRK01356 hscB co-chaperone Hsc 99.6 7.6E-15 1.7E-19 110.0 7.1 66 53-118 2-76 (166)
50 KOG0624 dsRNA-activated protei 99.6 6.7E-15 1.5E-19 120.7 6.8 72 50-121 391-469 (504)
51 PRK00294 hscB co-chaperone Hsc 99.5 3.1E-14 6.8E-19 107.3 7.7 68 51-118 2-80 (173)
52 PRK03578 hscB co-chaperone Hsc 99.5 3.3E-14 7.1E-19 107.5 7.6 67 52-118 5-82 (176)
53 PTZ00100 DnaJ chaperone protei 99.5 1.8E-14 3.9E-19 101.7 5.4 52 52-103 64-115 (116)
54 KOG0720 Molecular chaperone (D 99.5 5.9E-14 1.3E-18 117.7 5.5 69 50-118 232-303 (490)
55 PHA02624 large T antigen; Prov 99.4 2.3E-13 4.9E-18 118.6 5.3 60 52-111 10-71 (647)
56 PRK09430 djlA Dna-J like membr 99.4 9.4E-14 2E-18 111.1 2.4 94 12-105 143-263 (267)
57 KOG0722 Molecular chaperone (D 99.4 4.3E-13 9.4E-18 105.7 3.7 67 52-118 32-101 (329)
58 KOG0550 Molecular chaperone (D 99.3 2E-12 4.2E-17 107.9 4.4 67 50-116 370-441 (486)
59 PRK01773 hscB co-chaperone Hsc 99.3 1.4E-11 3E-16 92.9 7.3 66 53-118 2-78 (173)
60 KOG0714 Molecular chaperone (D 99.3 3.2E-12 6.8E-17 100.6 3.8 65 52-116 2-71 (306)
61 COG5407 SEC63 Preprotein trans 99.2 7.7E-12 1.7E-16 105.2 5.1 71 51-121 96-175 (610)
62 TIGR00714 hscB Fe-S protein as 99.1 2.5E-10 5.4E-15 84.8 6.7 54 65-118 3-65 (157)
63 KOG1150 Predicted molecular ch 98.9 9.3E-10 2E-14 84.2 4.7 64 52-115 52-120 (250)
64 COG5269 ZUO1 Ribosome-associat 98.9 1.6E-09 3.5E-14 86.4 4.1 66 52-117 42-116 (379)
65 KOG0723 Molecular chaperone (D 98.7 2.6E-08 5.7E-13 68.9 5.2 51 55-105 58-108 (112)
66 KOG1789 Endocytosis protein RM 98.4 4.2E-07 9.1E-12 83.5 5.0 53 51-103 1279-1336(2235)
67 KOG0568 Molecular chaperone (D 98.3 5.6E-07 1.2E-11 70.7 4.0 54 52-105 46-103 (342)
68 KOG3192 Mitochondrial J-type c 98.0 1.4E-05 2.9E-10 59.1 4.9 70 51-120 6-86 (168)
69 PF03656 Pam16: Pam16; InterP 97.1 0.00093 2E-08 48.1 4.8 53 54-106 59-111 (127)
70 COG1076 DjlA DnaJ-domain-conta 97.1 0.00023 5E-09 53.6 1.7 83 16-102 80-173 (174)
71 KOG0431 Auxilin-like protein a 96.8 0.0016 3.5E-08 55.9 4.1 33 56-88 391-423 (453)
72 COG1076 DjlA DnaJ-domain-conta 96.5 0.0018 3.8E-08 48.8 2.5 65 54-118 2-77 (174)
73 PF13446 RPT: A repeated domai 93.3 0.17 3.6E-06 31.4 3.9 45 53-104 5-49 (62)
74 PF11833 DUF3353: Protein of u 92.0 0.38 8.2E-06 37.0 5.1 40 62-105 1-40 (194)
75 KOG3442 Uncharacterized conser 87.0 1.9 4E-05 31.0 5.0 54 54-107 60-113 (132)
76 KOG0724 Zuotin and related mol 86.9 0.73 1.6E-05 37.8 3.4 50 65-114 4-61 (335)
77 PF14687 DUF4460: Domain of un 85.2 1.4 3E-05 30.9 3.7 33 64-96 5-37 (112)
78 COG5552 Uncharacterized conser 63.5 29 0.00062 22.8 5.1 33 53-85 3-35 (88)
79 PF07709 SRR: Seven Residue Re 58.7 7.6 0.00017 17.0 1.3 13 91-103 2-14 (14)
80 PF10041 DUF2277: Uncharacteri 52.2 65 0.0014 21.1 5.4 52 53-104 3-61 (78)
81 PF07739 TipAS: TipAS antibiot 47.3 56 0.0012 21.9 4.8 49 60-113 51-100 (118)
82 cd01388 SOX-TCF_HMG-box SOX-TC 45.3 67 0.0015 19.9 4.6 42 72-114 14-55 (72)
83 cd01390 HMGB-UBF_HMG-box HMGB- 35.2 98 0.0021 18.3 4.5 41 73-114 14-54 (66)
84 PF08447 PAS_3: PAS fold; Int 34.8 8.6 0.00019 24.1 -0.8 28 53-84 6-34 (91)
85 PF12434 Malate_DH: Malate deh 33.0 59 0.0013 17.1 2.3 18 66-83 9-26 (28)
86 PF11207 DUF2989: Protein of u 32.0 1.3E+02 0.0028 23.4 5.1 58 59-116 3-60 (203)
87 KOG2320 RAS effector RIN1 (con 31.1 87 0.0019 28.3 4.4 39 58-101 394-432 (651)
88 cd00084 HMG-box High Mobility 30.2 1.2E+02 0.0026 17.7 4.5 43 71-114 12-54 (66)
89 cd01389 MATA_HMG-box MATA_HMG- 25.5 1.8E+02 0.0038 18.2 4.6 43 71-114 13-55 (77)
90 PF00505 HMG_box: HMG (high mo 24.2 1.3E+02 0.0028 17.9 3.3 42 71-113 12-53 (69)
91 COG0089 RplW Ribosomal protein 23.3 82 0.0018 21.4 2.3 22 58-79 25-46 (94)
92 PF15178 TOM_sub5: Mitochondri 23.2 1.1E+02 0.0023 18.3 2.5 24 56-79 2-25 (51)
93 PRK08230 tartrate dehydratase 23.0 2.7E+02 0.0059 22.9 5.7 60 69-130 9-68 (299)
94 KOG0527 HMG-box transcription 22.6 1.2E+02 0.0027 25.2 3.7 44 71-115 74-117 (331)
95 PF12725 DUF3810: Protein of u 21.4 94 0.002 25.6 2.8 91 52-144 81-186 (318)
96 PF03820 Mtc: Tricarboxylate c 20.8 1E+02 0.0022 25.4 2.9 25 63-87 46-70 (308)
97 CHL00030 rpl23 ribosomal prote 20.5 1E+02 0.0022 20.8 2.4 21 58-78 23-43 (93)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.1e-24 Score=175.53 Aligned_cols=69 Identities=46% Similarity=0.650 Sum_probs=64.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSG-N---GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
.+|||+||||+++|+.+|||+|||+|+++||||+++ + +++|++|++||+||+||++|+.||+++.....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 579999999999999999999999999999999998 3 67899999999999999999999999987755
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.6e-23 Score=164.89 Aligned_cols=71 Identities=44% Similarity=0.605 Sum_probs=65.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
...+|||+||||+.+|+..|||+|||+|++++|||+|++ +++|++|+.||+||+||++|+.||.++..+..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 346899999999999999999999999999999999987 56899999999999999999999999976544
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-20 Score=151.70 Aligned_cols=68 Identities=47% Similarity=0.716 Sum_probs=64.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchHHHHHhhhhhccc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYDMSLVGRR 119 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 119 (147)
...||+||||+++|+.+|||+|||+|+++|||||+++ .++|++|.+||+||+||++|..||+++....
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 4689999999999999999999999999999999987 5889999999999999999999999997665
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.8e-20 Score=155.71 Aligned_cols=66 Identities=41% Similarity=0.554 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||+||+||.+|..||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 3699999999999999999999999999999999873 47899999999999999999999998764
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.81 E-value=2.4e-20 Score=157.24 Aligned_cols=66 Identities=48% Similarity=0.672 Sum_probs=63.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|+++||||++++.++|++|++||+||+||.+|+.||.++..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 469999999999999999999999999999999998889999999999999999999999998764
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.3e-20 Score=152.62 Aligned_cols=66 Identities=42% Similarity=0.579 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 3699999999999999999999999999999999864 57899999999999999999999998764
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=151.48 Aligned_cols=65 Identities=37% Similarity=0.553 Sum_probs=60.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.+|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||+||+||++|+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 3699999999999999999999999999999999873 4789999999999999999999999874
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.6e-19 Score=148.09 Aligned_cols=66 Identities=42% Similarity=0.607 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+++++||||+++. .++|++|++||+||+||.+|..||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 3699999999999999999999999999999999863 47899999999999999999999998764
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.3e-18 Score=140.42 Aligned_cols=66 Identities=39% Similarity=0.638 Sum_probs=61.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||++++++|||++++ .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 3699999999999999999999999999999999864 57899999999999999999999998764
No 10
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=4.6e-19 Score=112.43 Aligned_cols=59 Identities=49% Similarity=0.801 Sum_probs=55.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHcCCchHHHHHh
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-G----RDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~----~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
|||+||||+++++.++|+++|+++++.+|||+... . +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999655 3 57999999999999999999998
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.2e-19 Score=146.10 Aligned_cols=67 Identities=45% Similarity=0.621 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||++|+||.+|..||.++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 4699999999999999999999999999999999763 468999999999999999999999987643
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8e-19 Score=145.96 Aligned_cols=66 Identities=44% Similarity=0.705 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||++++++|||++.+ .++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 3599999999999999999999999999999999864 46899999999999999999999998764
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.3e-19 Score=146.16 Aligned_cols=66 Identities=41% Similarity=0.604 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 4699999999999999999999999999999999864 46899999999999999999999998764
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=145.71 Aligned_cols=66 Identities=44% Similarity=0.697 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+||.+|..||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 3699999999999999999999999999999999864 57899999999999999999999998764
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.2e-18 Score=145.25 Aligned_cols=66 Identities=45% Similarity=0.628 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+||.+|..||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 4699999999999999999999999999999999753 57899999999999999999999998754
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=144.42 Aligned_cols=65 Identities=40% Similarity=0.518 Sum_probs=60.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||++|+||.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 599999999999999999999999999999999864 36799999999999999999999998764
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.4e-18 Score=144.91 Aligned_cols=66 Identities=47% Similarity=0.709 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.++||+|||+++++||||++++ .++|++|++||++|+||.+|..||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 3699999999999999999999999999999999864 57899999999999999999999998864
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=144.20 Aligned_cols=66 Identities=52% Similarity=0.721 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||+||+||.+|..||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 3699999999999999999999999999999999863 46899999999999999999999998764
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=144.16 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=60.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||++++++|||++++ .++|++|++||+||+||.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 599999999999999999999999999999999875 35799999999999999999999998753
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.2e-18 Score=143.58 Aligned_cols=65 Identities=48% Similarity=0.679 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+||.+|..||+++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 599999999999999999999999999999999764 57899999999999999999999998764
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.4e-18 Score=142.85 Aligned_cols=66 Identities=42% Similarity=0.593 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|++++|||+++. .++|++|++||+||+||.+|..||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999874 46899999999999999999999999864
No 22
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-18 Score=136.40 Aligned_cols=66 Identities=52% Similarity=0.676 Sum_probs=61.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..++|+||||+++++.++|||+||+|++++|||++++ .++|++||+||++|+||.+|..||+++.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 5699999999999999999999999999999999887 47899999999999999999999999653
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.5e-18 Score=143.82 Aligned_cols=62 Identities=47% Similarity=0.679 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
..|||+||||+++|+.+|||+|||+|+++||||++.. +++|++|++||+||+||.+|..||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3699999999999999999999999999999999763 4789999999999999999999998
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.6e-18 Score=143.79 Aligned_cols=65 Identities=43% Similarity=0.593 Sum_probs=60.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||++++++|||++++ .++|++|++||++|+|+.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999874 46899999999999999999999998764
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.8e-18 Score=142.85 Aligned_cols=66 Identities=44% Similarity=0.572 Sum_probs=61.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.++||+|||++++++|||++++ .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 3699999999999999999999999999999999864 46899999999999999999999998764
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.5e-18 Score=143.37 Aligned_cols=65 Identities=45% Similarity=0.639 Sum_probs=60.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||++|+||.+|..||+++..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 699999999999999999999999999999999863 46899999999999999999999998764
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.8e-18 Score=143.04 Aligned_cols=65 Identities=43% Similarity=0.595 Sum_probs=61.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 599999999999999999999999999999999874 46899999999999999999999998764
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=6.1e-18 Score=140.61 Aligned_cols=66 Identities=48% Similarity=0.661 Sum_probs=61.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+|+.+|..||+++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 3699999999999999999999999999999999863 46899999999999999999999998764
No 29
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-17 Score=134.78 Aligned_cols=67 Identities=46% Similarity=0.708 Sum_probs=62.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|||+||||+++|+..|||+||++|+++||||.+.+ .++|++|.+||++|+|+++|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999998765 678999999999999999999999999875
No 30
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-17 Score=134.74 Aligned_cols=71 Identities=38% Similarity=0.549 Sum_probs=65.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCCC
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTT 122 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 122 (147)
..|||+||||..+++..+|+++|+..++++||||+++ .++|+.|.+||+||+|+..|..||++++......
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 5799999999999999999999999999999999987 4679999999999999999999999998776543
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=139.14 Aligned_cols=65 Identities=40% Similarity=0.617 Sum_probs=60.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||++++++|||++.+ +++|++|++||++|+|+.+|..||.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 599999999999999999999999999999998753 56899999999999999999999998754
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-17 Score=139.50 Aligned_cols=76 Identities=43% Similarity=0.558 Sum_probs=66.9
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCCCc
Q 042521 49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTR 123 (147)
Q Consensus 49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~ 123 (147)
+-..++||+||||..+++..+||++||+|++++|||++++ +++|+.|+.||+||+||..|..||....+..+...
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~ 83 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN 83 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999999886 57899999999999999999999998875544433
Q ss_pred c
Q 042521 124 T 124 (147)
Q Consensus 124 ~ 124 (147)
+
T Consensus 84 s 84 (508)
T KOG0717|consen 84 S 84 (508)
T ss_pred C
Confidence 3
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.71 E-value=1.4e-17 Score=137.52 Aligned_cols=65 Identities=49% Similarity=0.698 Sum_probs=60.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
|||+||||+++|+.++||+||+++++++|||+++. .++|++|++||++|+|+.+|..||.++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999853 578999999999999999999999987643
No 34
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-17 Score=139.90 Aligned_cols=70 Identities=40% Similarity=0.600 Sum_probs=64.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
.+.+||.+|+|+++|+.+|||+|||++++.|||||..+ ++.|+.|.+||+||+||.+|..||.++..+..
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 35699999999999999999999999999999999875 45699999999999999999999999998776
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=138.37 Aligned_cols=65 Identities=43% Similarity=0.671 Sum_probs=60.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.+|||+|||+|++++|||++++ .++|++|++||++|+|+.+|..||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 599999999999999999999999999999999864 36799999999999999999999998764
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.71 E-value=1.7e-17 Score=134.76 Aligned_cols=64 Identities=44% Similarity=0.694 Sum_probs=60.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.|||+||||+++++.+|||+|||++++++|||++.+ +++|++|++||++|+|+.+|..||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 599999999999999999999999999999999753 5789999999999999999999999864
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=138.02 Aligned_cols=65 Identities=45% Similarity=0.626 Sum_probs=61.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++|+.++||+||+++++++|||++++ .++|++|++||++|+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 589999999999999999999999999999999864 57899999999999999999999998764
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.5e-17 Score=137.64 Aligned_cols=66 Identities=45% Similarity=0.617 Sum_probs=61.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.+|||+|||++++++|||+++. .++|++|++||++|+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4699999999999999999999999999999999864 46899999999999999999999998764
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3e-17 Score=136.67 Aligned_cols=65 Identities=46% Similarity=0.695 Sum_probs=60.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||+++++.++||+|||++++++|||++++ .++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 599999999999999999999999999999999764 57899999999999999999999998754
No 40
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.69 E-value=4e-17 Score=101.97 Aligned_cols=54 Identities=50% Similarity=0.773 Sum_probs=50.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCch
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPT 106 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~ 106 (147)
.|||+||||+++++.++||++|+++++.+|||+++. .+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999883 578999999999999985
No 41
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=3e-17 Score=121.16 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=63.6
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 53 GSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 53 ~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
..+|+||||+++| +.++||+|||++++++|||+++++++|++|++||++|+|+..|..||.++.....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 4689999999999 9999999999999999999999999999999999999999999999999875543
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66 E-value=1.1e-16 Score=143.78 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=64.0
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
...+||+||||+++|+..+||+|||++++++|||++++ .++|+.|++||+||+||.+|..||.++..+..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 35799999999999999999999999999999999874 46799999999999999999999999876533
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=1.5e-16 Score=97.65 Aligned_cols=51 Identities=51% Similarity=0.793 Sum_probs=48.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSD 104 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d 104 (147)
|||+||||+++++.++||++|+++++++|||+++. .+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999874 5789999999999986
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.9e-16 Score=119.97 Aligned_cols=73 Identities=33% Similarity=0.468 Sum_probs=65.0
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521 49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS----GNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRT 121 (147)
Q Consensus 49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~----~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 121 (147)
....-|+|+||||+++++..|||++||+|++++||||. ++++.|..|.+||+.|+|+..|.+|.+++..-.++
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq 171 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ 171 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence 34567999999999999999999999999999999995 34677999999999999999999999998765544
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.3e-16 Score=120.89 Aligned_cols=67 Identities=43% Similarity=0.561 Sum_probs=61.4
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN------GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
-..+|+|+||||..+|+..+|++||+++++++|||++.. .++|+.|+.||.||+|.++|+.||..+.
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 345699999999999999999999999999999999853 4579999999999999999999999875
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-15 Score=112.84 Aligned_cols=64 Identities=50% Similarity=0.703 Sum_probs=59.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSL 115 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 115 (147)
..+||+||||+++++..+|+++|+++++++|||+++. .+.|..|++||++|+|+..|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4699999999999999999999999999999999874 378999999999999999999999963
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.58 E-value=3.3e-15 Score=131.83 Aligned_cols=66 Identities=42% Similarity=0.582 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.|||+||||+++|+.++||++||++++++|||+++. .++|+.|++||++|+||.+|..||.++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 589999999999999999999999999999999865 357999999999999999999999987654
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=6.2e-15 Score=110.90 Aligned_cols=66 Identities=27% Similarity=0.457 Sum_probs=58.2
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.|||+||||++. ++..+|+++|+++++++|||+..+ .+.+..||+||++|+||..|..|+..+.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 489999999995 688999999999999999999653 235889999999999999999999887644
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=7.6e-15 Score=109.95 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=58.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.|||+||||++. ++..+|+++|+++.+++|||+..+. +.+..||+||++|+||.+|..|+..+.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~ 76 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNI 76 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCC
Confidence 489999999996 7899999999999999999997652 23679999999999999999999988654
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.56 E-value=6.7e-15 Score=120.69 Aligned_cols=72 Identities=35% Similarity=0.494 Sum_probs=64.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDMSLVGRRRT 121 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 121 (147)
...+|||+||||.++|+..||.+|||+++.++|||...++ .+|..|..|-+||+||++|+.||...+.-.+.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~E 469 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPE 469 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChh
Confidence 4568999999999999999999999999999999988774 35999999999999999999999987755443
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=3.1e-14 Score=107.27 Aligned_cols=68 Identities=28% Similarity=0.514 Sum_probs=60.2
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
+..+||++|||++. .+..+|+++|+++++++|||+... .+.+..||+||++|+||.+|..|+..+.+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~ 80 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH 80 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 35799999999996 578999999999999999999754 235899999999999999999999998754
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=3.3e-14 Score=107.46 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=58.7
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|||+||||++. ++..+|+++|+++++++|||+... .+.+..||+||++|+||.+|..|+..+.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 3699999999995 689999999999999999999763 123589999999999999999999988754
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.52 E-value=1.8e-14 Score=101.70 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=49.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLS 103 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~ 103 (147)
..++|+||||+++++.+||+++||++++++|||++++++.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999999999999999999999985
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.9e-14 Score=117.66 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
....|+|.+|||+.+++.++||+.||+++..+||||+.. +|.|+.|+.||++|+|+++|..||..+...
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 347899999999999999999999999999999999874 678999999999999999999999998754
No 55
>PHA02624 large T antigen; Provisional
Probab=99.41 E-value=2.3e-13 Score=118.60 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=57.9
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521 52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
..++|+||||++++ +.++||+|||++++++|||+++++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 9999999999999999999999999999999999999999999998
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.40 E-value=9.4e-14 Score=111.11 Aligned_cols=94 Identities=26% Similarity=0.225 Sum_probs=72.4
Q ss_pred ccccCCCccchhhhcccccCCCCCCcccccccC----------------CCCCCCCccCcccccccCCCCCHHHHHHHHH
Q 042521 12 ALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEM----------------PVTAPGTGGSLYEVLRVEPTATISEIKTAYR 75 (147)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr 75 (147)
...+++.|+.++..+...++.+......+.... .......-.++|+||||+++++.++||++||
T Consensus 143 DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr 222 (267)
T PRK09430 143 DGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYR 222 (267)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHH
Confidence 456888888888888888888775544432220 0111234479999999999999999999999
Q ss_pred HHHHHhCCCCCCC-----------hHHHHHHHHHHHHcCCc
Q 042521 76 SLAKVYHPDLSGN-----------GRDFIEIHNAYETLSDP 105 (147)
Q Consensus 76 ~l~~~~HPDk~~~-----------~~~~~~I~~Ay~vL~d~ 105 (147)
++++++|||+..+ +++|++|++||++|+..
T Consensus 223 ~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 223 KLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999532 36799999999999853
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.3e-13 Score=105.66 Aligned_cols=67 Identities=40% Similarity=0.581 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|.|+||||.++++..+|.+|||+|++++|||++.+. +.|..|..||++|.|.+.|..||-.++..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 46999999999999999999999999999999998763 46999999999999999999999988754
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2e-12 Score=107.87 Aligned_cols=67 Identities=37% Similarity=0.556 Sum_probs=61.3
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.+.+|||.||||..+++..|||++|+++++.+|||++... .+|++|.+||.+|+||.+|..||...+
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 4468999999999999999999999999999999998753 469999999999999999999998765
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=1.4e-11 Score=92.89 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=58.4
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.|||++|||++. .+..+|++.|+++.+.+|||+.... +....||+||.+|+||.+|+.|-..+.++
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g 78 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTG 78 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccC
Confidence 489999999995 7999999999999999999987541 24688999999999999999999998743
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.2e-12 Score=100.63 Aligned_cols=65 Identities=43% Similarity=0.675 Sum_probs=59.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
..|||+||||.++++..+|++||+++++++|||+++.. .+|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999996654 358999999999999999999999997
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.24 E-value=7.7e-12 Score=105.17 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=63.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRT 121 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 121 (147)
..-|+||||||..+++..+||++||+|+.++||||.+. ++++.+|++||+.|+|...|.+|-.++-...++
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 45699999999999999999999999999999999775 467999999999999999999999998665554
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.09 E-value=2.5e-10 Score=84.83 Aligned_cols=54 Identities=33% Similarity=0.538 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 65 ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 65 as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.+..+|+++|+++++++|||+... .+.+..||+||++|+||.+|+.|+..+.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~ 65 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI 65 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 478899999999999999998543 246899999999999999999999999754
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.3e-10 Score=84.19 Aligned_cols=64 Identities=28% Similarity=0.440 Sum_probs=56.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSL 115 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~ 115 (147)
+-|+|+||.|.|..+.++||+.||+++..+|||+++++ ..|.-|.+||..|-|+..|...+...
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 56899999999999999999999999999999999974 46999999999999998766555443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.6e-09 Score=86.42 Aligned_cols=66 Identities=29% Similarity=0.327 Sum_probs=58.4
Q ss_pred ccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEP---TATISEIKTAYRSLAKVYHPDLSG------NGRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|+|.+|||+. .+.+.+|.++.++.+.+||||+.. ..+-|..|+.||+||+|+..|..||..-..
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 479999999987 778999999999999999999862 256799999999999999999999987553
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-08 Score=68.92 Aligned_cols=51 Identities=27% Similarity=0.309 Sum_probs=47.7
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521 55 LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP 105 (147)
Q Consensus 55 ~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~ 105 (147)
.-.||||+++++.+.||.++|+++...|||+++++-....||+|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 346999999999999999999999999999999999999999999999754
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.2e-07 Score=83.49 Aligned_cols=53 Identities=34% Similarity=0.474 Sum_probs=46.4
Q ss_pred CccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcC
Q 042521 51 TGGSLYEVLRVEPT----ATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLS 103 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~ 103 (147)
+..+.|+||.|+-+ ...++||++|++++.+|||||++. -+.|..+|+||+.|.
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 45688999999862 355889999999999999999987 578999999999998
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.6e-07 Score=70.66 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=48.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HcCCc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYE-TLSDP 105 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~-vL~d~ 105 (147)
-+.+|.||||..+++.++++.+|..|++++|||.+.+ .+.|.+|.+||. ||...
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998765 578999999999 77643
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.4e-05 Score=59.15 Aligned_cols=70 Identities=30% Similarity=0.562 Sum_probs=57.9
Q ss_pred CccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhccc
Q 042521 51 TGGSLYEVLRVEP--TATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGRR 119 (147)
Q Consensus 51 ~~~~~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 119 (147)
...+||.++|... ..++..++.-|....+++|||+... .+...+||+||.+|.||-.|+.|-..+.+..
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e 85 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQE 85 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 4568999998665 4567777779999999999998543 4568999999999999999999999888754
Q ss_pred C
Q 042521 120 R 120 (147)
Q Consensus 120 ~ 120 (147)
.
T Consensus 86 ~ 86 (168)
T KOG3192|consen 86 Q 86 (168)
T ss_pred C
Confidence 3
No 69
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.12 E-value=0.00093 Score=48.05 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=43.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCch
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPT 106 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~ 106 (147)
.-..||+|++..+.++|.+.|.+|....+|+++++.-.-..|..|.+.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999998899999999988655
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00023 Score=53.58 Aligned_cols=83 Identities=25% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCCccchhhhcccccCCCCCCcccccccCCCCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------
Q 042521 16 SPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN------- 88 (147)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------- 88 (147)
...++..+..+....+......+........ ...+.|.+||+....+..+|+++|+++....|||+...
T Consensus 80 ~~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~----~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~ 155 (174)
T COG1076 80 HAKERQTLRDIAFLLEQSELREELEEAREQL----DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEF 155 (174)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHcc----cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHH
Confidence 4444555555555444444444443333111 12688999999999999999999999999999997432
Q ss_pred ----hHHHHHHHHHHHHc
Q 042521 89 ----GRDFIEIHNAYETL 102 (147)
Q Consensus 89 ----~~~~~~I~~Ay~vL 102 (147)
.+++++|++||+.+
T Consensus 156 ~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 156 IEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 45688888888754
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.76 E-value=0.0016 Score=55.93 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=27.4
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 042521 56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN 88 (147)
Q Consensus 56 Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 88 (147)
++=+++..-.++.+||++||+.++.+||||...
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccC
Confidence 444556667899999999999999999999653
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0018 Score=48.77 Aligned_cols=65 Identities=31% Similarity=0.550 Sum_probs=52.4
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 54 SLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 54 ~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
+++..+|.++.+ ..+.++..|+.+.+.+|||+.... +.+..++.||.+|.+|..|..|-..+..+
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g 77 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG 77 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence 456666766644 566789999999999999987641 35888999999999999999998887633
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=93.27 E-value=0.17 Score=31.42 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=35.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSD 104 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d 104 (147)
.+.|++|||+++.+.+.|-.+|+.... .++.....+.+|..++.+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 357999999999999999999999888 223456666677766654
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=92.03 E-value=0.38 Score=36.98 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521 62 EPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP 105 (147)
Q Consensus 62 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~ 105 (147)
+++|+.+||.+|+.++..+| .++++.-..|..||+.|.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988 55678889999999976544
No 75
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=1.9 Score=30.96 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=44.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchH
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTA 107 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~ 107 (147)
.--+||+|+...+.++|.+.|..|-....+.++++.-.-..|-.|-+-|..+..
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999986666666777776654443
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=0.73 Score=37.76 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 65 ATISEIKTAYRSLAKVYHPDLSG--------NGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 65 as~~eIk~ayr~l~~~~HPDk~~--------~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
++..+|..+|+...+..||++.. ..+.++.|.+||.+|.+...|...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 56788999999999999999763 245689999999999986544444433
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=85.18 E-value=1.4 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 042521 64 TATISEIKTAYRSLAKVYHPDLSGNGRDFIEIH 96 (147)
Q Consensus 64 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~ 96 (147)
..+..+++.+.|..-+++|||..+....-+++|
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~N 37 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVN 37 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhh
Confidence 456788999999999999999776543334443
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=63.51 E-value=29 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=26.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDL 85 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk 85 (147)
++.-+++|+++.+++.||+.+-++.+.++.-..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 455678999999999999999988888874433
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=58.73 E-value=7.6 Score=16.95 Aligned_cols=13 Identities=54% Similarity=0.859 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcC
Q 042521 91 DFIEIHNAYETLS 103 (147)
Q Consensus 91 ~~~~I~~Ay~vL~ 103 (147)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887764
No 80
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.18 E-value=65 Score=21.12 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=34.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHH----HHHHHHHHHcCC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDF----IEIHNAYETLSD 104 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~----~~I~~Ay~vL~d 104 (147)
+|--.+.|+.|.++.+||..+-.+.+++..--..++ .+.| .+|..+-..|.+
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999999885544333 3333 445555444443
No 81
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=47.27 E-value=56 Score=21.93 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=33.0
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 60 RVEPTA-TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 60 gv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
|++|+. .-.+|-+.+..++..+++ .+.+.+..|.+.| +.||.-+..||.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~ 100 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDK 100 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccc
Confidence 455544 345577778888887776 5678899999999 888988998883
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=45.30 E-value=67 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 72 TAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 72 ~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
+..+...+.-||+. ...+..+.|.+.|..|++.++...++..
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566677789974 4567788999999999988766555544
No 83
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=35.22 E-value=98 Score=18.27 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 73 AYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 73 ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
..+...+.-||+. ...+..+.|.+.|..|++.++....+..
T Consensus 14 ~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 14 EQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566678873 4567789999999999987665554444
No 84
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=34.85 E-value=8.6 Score=24.15 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=20.0
Q ss_pred cCcccccccCCCCCHHHH-HHHHHHHHHHhCCC
Q 042521 53 GSLYEVLRVEPTATISEI-KTAYRSLAKVYHPD 84 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eI-k~ayr~l~~~~HPD 84 (147)
..++++||++ ++++ ......+....|||
T Consensus 6 ~~~~~i~G~~----~~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYS----PEEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-----HHHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCC----HHHhccCCHHHHHhhcCHH
Confidence 4678999984 4666 56677788899997
No 85
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=32.99 E-value=59 Score=17.06 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 042521 66 TISEIKTAYRSLAKVYHP 83 (147)
Q Consensus 66 s~~eIk~ayr~l~~~~HP 83 (147)
..++.+.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347789999999999983
No 86
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.01 E-value=1.3e+02 Score=23.36 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=48.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 59 LRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 59 Lgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.|-....+.++|.+..=.++..+|.|---..++-..|..=|+++.+|.....|+....
T Consensus 3 ~GC~~~~~t~~iC~~nP~LC~dLn~Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~l~~ 60 (203)
T PF11207_consen 3 SGCFENPNTEQICENNPELCEDLNDDGWCRYERTDLIWHRYELKKNPTDKNKYQLLEA 60 (203)
T ss_pred cCcCCCCCHHHHHccCHHHHHHhCcchhhccHhHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4555567889999999999999997766667888999999999999999988887654
No 87
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.05 E-value=87 Score=28.33 Aligned_cols=39 Identities=13% Similarity=0.381 Sum_probs=28.4
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 042521 58 VLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYET 101 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~v 101 (147)
.|-++..+..++||.++.++.+.|||. ++...+.+|.+.
T Consensus 394 ~~~~Ps~~~mEqvk~k~~~m~r~YSP~-----kkl~~Llk~ckL 432 (651)
T KOG2320|consen 394 FLSTPSDVLMEQVKQKFTAMQRRYSPS-----KKLHALLKACKL 432 (651)
T ss_pred eccCCcHHHHHHHHHHHHHHHHhhChH-----HHHHHHHHHHHH
Confidence 445566778899999999999999995 344455554443
No 88
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=30.19 E-value=1.2e+02 Score=17.69 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
.+.++...+.-||+. ...+....|.+.|..|++.++....+..
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445666677788883 3456788999999999987655444443
No 89
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=25.48 E-value=1.8e+02 Score=18.15 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
.+.++..++.-||+. ...+..+.|.+.|..|++.++...++..
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 456677788889975 3467778899999999977655444433
No 90
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=24.24 E-value=1.3e+02 Score=17.92 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
.+.++...+.-||+.. ..+..+.|.+.|.-|++.++....+.
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~eK~~y~~~ 53 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEEEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHHHHHHHHHH
Confidence 3445666667799766 56778889999999876655444433
No 91
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=82 Score=21.43 Aligned_cols=22 Identities=45% Similarity=0.513 Sum_probs=18.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 042521 58 VLRVEPTATISEIKTAYRSLAK 79 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~~ 79 (147)
+|-|.++|+..+||+|..++--
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 6789999999999999987743
No 92
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.21 E-value=1.1e+02 Score=18.27 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 042521 56 YEVLRVEPTATISEIKTAYRSLAK 79 (147)
Q Consensus 56 Y~iLgv~~~as~~eIk~ayr~l~~ 79 (147)
|.+=|+.|..+++|.|+.-|+-..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 566789999999999988776543
No 93
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=22.97 E-value=2.7e+02 Score=22.95 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcccCCCccCCCCCC
Q 042521 69 EIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCS 130 (147)
Q Consensus 69 eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~~~ 130 (147)
+|.++-.+++.+-- ..-.++....|.+||+.-.+|..|..++..+++..-.....-+-|.
T Consensus 9 ~i~~~v~~l~~~a~--~~lp~Dv~~al~~a~~~E~s~~ak~~L~~ileN~~iA~~~~~PiCQ 68 (299)
T PRK08230 9 KLTDIMAKFTAYIS--KRLPDDVTAKLKELKDAETSPLAKIIYDTMFENQQLAIDLNRPSCQ 68 (299)
T ss_pred HHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35555554444331 1112477899999999999999999999999876655444444443
No 94
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=22.57 E-value=1.2e+02 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSL 115 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 115 (147)
.+..|+.+.+-.||-. +.|.-++|-+-|+.|++.++|-.+|..-
T Consensus 74 Sq~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~EAe 117 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDEAE 117 (331)
T ss_pred hHHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHHHH
Confidence 3466777777778754 5788999999999999999998887643
No 95
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.40 E-value=94 Score=25.55 Aligned_cols=91 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC-------hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 52 GGSLYEVLRVEP-TATISEIKTAYRSLAKVY-------HPDLSGN-------GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 52 ~~~~Y~iLgv~~-~as~~eIk~ayr~l~~~~-------HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
..++++-||++. ..+.+|+.+-...+..+. ++|..+. .+.++++.++|+.|.+.-..-.|. -.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l~~~--~~ 158 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFLSGY--YP 158 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccCCC--CC
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCccc
Q 042521 117 GRRRTTRTASFGCSGGSGFHPTRRWETD 144 (147)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 144 (147)
..++...+.....-+-+|++...+=|++
T Consensus 159 ~~K~~l~S~~~s~~g~~Gyy~PFT~EA~ 186 (318)
T PF12725_consen 159 SPKPSLFSRLMSYMGISGYYNPFTGEAN 186 (318)
T ss_pred CCcHhhccHHHHHccCceEEcCCcceee
No 96
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.84 E-value=1e+02 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC
Q 042521 63 PTATISEIKTAYRSLAKVYHPDLSG 87 (147)
Q Consensus 63 ~~as~~eIk~ayr~l~~~~HPDk~~ 87 (147)
++.+.+||-+|.+..-..+|||.+.
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCC
Confidence 3459999999999999999999765
No 97
>CHL00030 rpl23 ribosomal protein L23
Probab=20.49 E-value=1e+02 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.2
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 042521 58 VLRVEPTATISEIKTAYRSLA 78 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~ 78 (147)
++-|+++|+..|||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567999999999999997764
Done!