Query 042521
Match_columns 147
No_of_seqs 215 out of 1251
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctr_A DNAJ homolog subfamily 99.9 8.7E-22 3E-26 132.0 7.7 69 50-118 4-75 (88)
2 2dn9_A DNAJ homolog subfamily 99.9 1.3E-21 4.3E-26 128.4 7.1 68 50-117 4-75 (79)
3 2och_A Hypothetical protein DN 99.9 1.4E-21 4.6E-26 126.6 7.0 66 51-116 6-72 (73)
4 2o37_A Protein SIS1; HSP40, J- 99.8 1E-21 3.5E-26 132.7 6.6 70 51-120 6-76 (92)
5 1hdj_A Human HSP40, HDJ-1; mol 99.8 2.3E-21 7.8E-26 126.7 7.9 67 52-118 2-71 (77)
6 2ctp_A DNAJ homolog subfamily 99.8 2E-21 7E-26 127.2 6.6 68 50-117 4-74 (78)
7 2ej7_A HCG3 gene; HCG3 protein 99.8 3.3E-21 1.1E-25 127.3 7.3 68 51-118 7-79 (82)
8 2yua_A Williams-beuren syndrom 99.8 3E-21 1E-25 132.0 7.2 68 51-118 15-86 (99)
9 2dmx_A DNAJ homolog subfamily 99.8 5.7E-21 1.9E-25 128.8 7.7 68 51-118 7-79 (92)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 6.6E-21 2.3E-25 127.7 7.8 67 51-117 15-84 (88)
11 1wjz_A 1700030A21RIK protein; 99.8 2.5E-21 8.6E-26 130.8 5.8 69 50-118 13-91 (94)
12 2lgw_A DNAJ homolog subfamily 99.8 5E-21 1.7E-25 131.1 6.3 68 53-120 2-74 (99)
13 2ctq_A DNAJ homolog subfamily 99.8 7E-21 2.4E-25 132.9 7.1 70 51-120 18-91 (112)
14 2ctw_A DNAJ homolog subfamily 99.8 2.4E-20 8.3E-25 129.6 7.9 68 51-118 15-86 (109)
15 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.5E-20 5.1E-25 129.3 4.0 69 52-120 2-74 (103)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 2.8E-20 9.6E-25 129.1 5.1 68 51-118 13-88 (109)
17 2l6l_A DNAJ homolog subfamily 99.8 1.2E-19 4E-24 133.1 6.9 68 51-118 8-85 (155)
18 1gh6_A Large T antigen; tumor 99.8 1.5E-20 5.2E-25 131.8 -2.1 65 52-116 7-73 (114)
19 1faf_A Large T antigen; J doma 99.8 1.5E-19 5.2E-24 119.0 2.7 60 52-111 10-71 (79)
20 3apq_A DNAJ homolog subfamily 99.8 1.1E-18 3.9E-23 131.8 7.5 68 53-120 2-73 (210)
21 2ys8_A RAB-related GTP-binding 99.7 3.7E-19 1.3E-23 119.7 3.3 58 52-109 26-86 (90)
22 2pf4_E Small T antigen; PP2A, 99.7 7.8E-20 2.7E-24 136.6 -0.4 67 52-118 10-78 (174)
23 3hho_A CO-chaperone protein HS 99.7 1.8E-18 6.2E-23 129.3 5.7 67 52-118 3-80 (174)
24 1fpo_A HSC20, chaperone protei 99.7 1.6E-18 5.3E-23 129.3 4.8 66 53-118 1-77 (171)
25 3bvo_A CO-chaperone protein HS 99.7 4.9E-18 1.7E-22 130.1 6.4 70 49-118 39-119 (207)
26 2guz_A Mitochondrial import in 99.7 2.3E-18 7.9E-23 111.1 2.4 57 52-108 13-70 (71)
27 3lz8_A Putative chaperone DNAJ 99.7 2E-18 6.8E-23 140.4 0.0 66 52-117 27-95 (329)
28 3uo3_A J-type CO-chaperone JAC 99.7 1.7E-17 5.8E-22 124.7 5.0 68 50-117 8-84 (181)
29 1iur_A KIAA0730 protein; DNAJ 99.7 6.7E-18 2.3E-22 113.3 2.4 62 47-108 10-76 (88)
30 1n4c_A Auxilin; four helix bun 99.6 3E-17 1E-21 123.3 0.6 59 53-111 117-182 (182)
31 3ag7_A Putative uncharacterize 99.6 7.7E-17 2.6E-21 111.6 2.5 70 35-106 24-104 (106)
32 2qwo_B Putative tyrosine-prote 99.6 1.6E-16 5.4E-21 107.3 2.1 52 53-104 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.6 2.8E-16 9.5E-21 138.5 0.4 72 49-120 17-92 (780)
34 2guz_B Mitochondrial import in 99.2 7.9E-12 2.7E-16 79.1 4.3 52 54-105 5-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.1 9.3E-11 3.2E-15 94.0 4.5 61 53-113 382-449 (450)
36 2pzi_A Probable serine/threoni 90.6 0.17 5.9E-06 43.6 3.5 46 52-101 628-675 (681)
37 2b7e_A PRE-mRNA processing pro 69.6 12 0.00043 22.3 5.0 50 68-117 3-58 (59)
38 1uzc_A Hypothetical protein FL 53.6 34 0.0012 21.0 5.1 55 64-118 11-69 (71)
39 2d7l_A WD repeat and HMG-box D 39.6 28 0.00097 21.6 3.2 44 71-114 17-60 (81)
40 3b0c_W CENP-W, centromere prot 36.9 45 0.0015 20.4 3.8 47 74-120 10-56 (76)
41 1qqr_A Streptokinase domain B; 36.8 19 0.00064 25.2 2.1 31 54-84 33-63 (138)
42 4a3n_A Transcription factor SO 36.3 59 0.002 18.9 4.2 41 71-112 14-54 (71)
43 1ckt_A High mobility group 1 p 31.1 80 0.0027 18.3 4.7 41 72-112 14-55 (71)
44 1wgf_A Upstream binding factor 29.8 73 0.0025 19.8 4.0 45 71-116 32-76 (90)
45 3f27_D Transcription factor SO 29.5 95 0.0032 18.6 4.7 41 71-112 18-58 (83)
46 2cqn_A Formin-binding protein 29.2 1E+02 0.0035 19.0 4.7 52 66-118 7-65 (77)
47 1ug2_A 2610100B20RIK gene prod 29.0 36 0.0012 22.2 2.3 32 54-85 56-88 (95)
48 2eqz_A High mobility group pro 29.0 77 0.0026 19.4 4.0 42 71-112 27-69 (86)
49 2crj_A SWI/SNF-related matrix- 27.1 1.2E+02 0.0039 18.8 4.9 40 71-111 19-58 (92)
50 1i11_A Transcription factor SO 27.0 89 0.0031 18.8 4.0 43 71-114 16-58 (81)
51 1wz6_A HMG-box transcription f 26.7 1.1E+02 0.0037 18.4 4.8 42 71-113 19-60 (82)
52 3nm9_A HMG-D, high mobility gr 26.7 1E+02 0.0035 18.1 4.3 39 71-113 15-53 (73)
53 2yrq_A High mobility group pro 23.2 1.3E+02 0.0044 20.9 4.7 39 71-109 27-66 (173)
54 2e6o_A HMG box-containing prot 22.9 1.2E+02 0.0042 18.5 4.1 41 71-112 29-69 (87)
55 2cs1_A PMS1 protein homolog 1; 22.7 1.1E+02 0.0037 19.0 3.8 39 71-110 19-57 (92)
56 1hme_A High mobility group pro 22.3 1.3E+02 0.0044 17.7 4.9 41 71-112 18-58 (77)
57 1hry_A Human SRY; DNA, DNA-bin 22.2 1.3E+02 0.0044 17.7 4.7 40 71-111 16-55 (76)
58 1vq8_S 50S ribosomal protein L 20.3 71 0.0024 20.2 2.5 21 58-78 26-46 (85)
59 1aab_A High mobility group pro 20.3 79 0.0027 19.1 2.7 42 71-112 19-61 (83)
No 1
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=131.98 Aligned_cols=69 Identities=42% Similarity=0.620 Sum_probs=63.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
....+||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 346799999999999999999999999999999999886 568999999999999999999999998644
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=128.45 Aligned_cols=68 Identities=43% Similarity=0.673 Sum_probs=62.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
+...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++..
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 346799999999999999999999999999999999875 57899999999999999999999998754
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.85 E-value=1.4e-21 Score=126.65 Aligned_cols=66 Identities=39% Similarity=0.645 Sum_probs=61.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
...+||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||.++.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 35699999999999999999999999999999999876 6889999999999999999999999874
No 4
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1e-21 Score=132.67 Aligned_cols=70 Identities=39% Similarity=0.639 Sum_probs=64.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
...|||+||||+++++.++||++|+++++++|||++. +.++|++|++||++|+||.+|..||.++.....
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 76 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence 3569999999999999999999999999999999985 578999999999999999999999999876544
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=2.3e-21 Score=126.70 Aligned_cols=67 Identities=39% Similarity=0.571 Sum_probs=62.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||.++..+
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 3689999999999999999999999999999999864 578999999999999999999999998654
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=127.23 Aligned_cols=68 Identities=40% Similarity=0.623 Sum_probs=62.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
....|||+||||+++++.++||++|+++++++|||++.. .+.|+.|++||++|+||.+|..||.++..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 346799999999999999999999999999999999864 57899999999999999999999998854
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=127.31 Aligned_cols=68 Identities=41% Similarity=0.573 Sum_probs=62.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...|||+||||+++++.++||++|+++++++|||+++.. +.|+.|++||++|+||.+|..||.++...
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 357999999999999999999999999999999998763 57999999999999999999999987543
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=132.02 Aligned_cols=68 Identities=37% Similarity=0.572 Sum_probs=62.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...+||+||||+++++.++||++|+++++++|||+++. .++|++|++||++|+||.+|..||..+...
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 45799999999999999999999999999999999864 578999999999999999999999987643
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.7e-21 Score=128.84 Aligned_cols=68 Identities=38% Similarity=0.590 Sum_probs=62.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...|||+||||+++++.++||++|+++++++|||+++. .+.|++|++||++|+||.+|..||..+...
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 35699999999999999999999999999999999875 367999999999999999999999997643
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=6.6e-21 Score=127.67 Aligned_cols=67 Identities=40% Similarity=0.584 Sum_probs=62.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
...|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||.++..
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 35799999999999999999999999999999999864 57899999999999999999999999853
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=2.5e-21 Score=130.83 Aligned_cols=69 Identities=30% Similarity=0.601 Sum_probs=62.9
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
....|||+||||+++++.++||++|+++++++|||+++. .+.|++|++||++|+||.+|..||..+.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 346799999999999999999999999999999999763 367999999999999999999999998654
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.83 E-value=5e-21 Score=131.14 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
.|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++.....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 489999999999999999999999999999999875 36799999999999999999999999875543
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7e-21 Score=132.93 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=64.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
...|||+||||+++++.++||++|+++++++|||++++ .++|++|++||++|+||.+|..||.++..+..
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 35799999999999999999999999999999999875 67899999999999999999999999986654
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-20 Score=129.64 Aligned_cols=68 Identities=43% Similarity=0.609 Sum_probs=62.8
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...+||+||||+++++.++||++|+++++++|||+++. .+.|++|++||++|+||.+|..||.++..+
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence 35799999999999999999999999999999999875 568999999999999999999999987643
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.80 E-value=1.5e-20 Score=129.33 Aligned_cols=69 Identities=41% Similarity=0.561 Sum_probs=63.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
..|||+||||+++++.++||++|+++++++|||+++. .++|++|++||++|+||.+|..||.++.....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 3689999999999999999999999999999999874 46899999999999999999999999876544
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=2.8e-20 Score=129.10 Aligned_cols=68 Identities=37% Similarity=0.482 Sum_probs=62.9
Q ss_pred CccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTA-TISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...|||+||||++++ +.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..||..+...
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 367999999999999 99999999999999999999876 467999999999999999999999998643
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=133.10 Aligned_cols=68 Identities=31% Similarity=0.619 Sum_probs=62.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----------RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
...|||+||||+++++.++||++|+++++++|||+++.. +.|+.|++||++|+||.+|+.||..+.+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 357999999999999999999999999999999998653 68999999999999999999999988653
No 18
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=1.5e-20 Score=131.83 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=61.5
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 52 GGSLYEVLRVEPTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
..++|+||||+++++. ++||++||++++++|||++++.++|++|++||++|+||.+|..||.++.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3689999999999998 9999999999999999999999999999999999999999999997654
No 19
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.76 E-value=1.5e-19 Score=118.99 Aligned_cols=60 Identities=18% Similarity=0.336 Sum_probs=56.7
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521 52 GGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 52 ~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
..++|+||||+++ ++.++||++||++++++|||++++.++|++|++||++|+|+..|..+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3589999999999 99999999999999999999999999999999999999999988763
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.76 E-value=1.1e-18 Score=131.82 Aligned_cols=68 Identities=37% Similarity=0.520 Sum_probs=62.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
.|||+||||+++++.++||++||++++++|||+++. .++|+.|++||++|+||.+|..||.++.....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 489999999999999999999999999999999863 56899999999999999999999999876544
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=119.68 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=53.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHH
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARA 109 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~ 109 (147)
..|||+||||+++++.++||++|+++++++|||++.+ .++|++|++||++|+|+.+|.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 4799999999999999999999999999999999843 678999999999999998763
No 22
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.75 E-value=7.8e-20 Score=136.59 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=60.1
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTAT--ISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..++|+||||+++++ .++||+|||++++++|||+++++++|++|++||++|+||.+|..||+++...
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w 78 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW 78 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCcc
Confidence 469999999999998 6999999999999999999999999999999999999999999999998633
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.74 E-value=1.8e-18 Score=129.25 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=60.6
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTAT--ISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
..|||+||||+++++ ..+||++|+++++++|||++++ .+.|..|++||++|+||.+|..||..+.+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 80 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGI 80 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCC
Confidence 469999999999887 9999999999999999999764 257999999999999999999999998644
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.73 E-value=1.6e-18 Score=129.33 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=60.4
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 53 GSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 53 ~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
+|||+||||++++ +..+||++|+++++++|||++++. +.|..|++||+||+||.+|..||..+.+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 77 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF 77 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence 3799999999999 999999999999999999997652 47999999999999999999999998744
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=130.14 Aligned_cols=70 Identities=21% Similarity=0.492 Sum_probs=61.5
Q ss_pred CCCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 49 PGTGGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 49 ~~~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
+....|||+||||+++ ++..+||++||++++++|||++++ .++|+.|++||+||+||.+|..||..+.+
T Consensus 39 ~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 39 PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 3346799999999986 789999999999999999999764 24689999999999999999999988764
Q ss_pred c
Q 042521 118 R 118 (147)
Q Consensus 118 ~ 118 (147)
.
T Consensus 119 ~ 119 (207)
T 3bvo_A 119 I 119 (207)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.3e-18 Score=111.05 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=53.1
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHH
Q 042521 52 GGSLYEVLRVEP-TATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTAR 108 (147)
Q Consensus 52 ~~~~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R 108 (147)
..++|+||||++ +++.++||++|+++++++|||++++.+.|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 358999999999 799999999999999999999999999999999999999987644
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.69 E-value=2e-18 Score=140.42 Aligned_cols=66 Identities=41% Similarity=0.640 Sum_probs=0.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++|+.++||+|||++++++|||++++ .++|++|++||++|+||.+|..||+++..
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 4699999999999999999999999999999998764 57899999999999999999999998544
No 28
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.68 E-value=1.7e-17 Score=124.75 Aligned_cols=68 Identities=28% Similarity=0.500 Sum_probs=61.4
Q ss_pred CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHhhhh-hc
Q 042521 50 GTGGSLYEVL------RVEP-TATISEIKTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYDMSL-VG 117 (147)
Q Consensus 50 ~~~~~~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD~~~-~~ 117 (147)
....|||+|| |+++ +++..+||++||++++++|||+++ +.+.|..|++||++|+||.+|..||..+ .+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g 84 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRN 84 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence 3457999999 4665 899999999999999999999987 5788999999999999999999999998 44
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.68 E-value=6.7e-18 Score=113.29 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHH
Q 042521 47 TAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTAR 108 (147)
Q Consensus 47 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R 108 (147)
..+....++|+||||+++++.++||++|+++++++|||++++ .++|++|++||++|+|...|
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 334456799999999999999999999999999999999886 46899999999999988655
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.63 E-value=3e-17 Score=123.32 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=54.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHH
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
.++|+||||+++++.++||++||++++++|||++.. .+.|+.|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999754 35899999999999999998766
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.63 E-value=7.7e-17 Score=111.56 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCcccccccCCCCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHcC
Q 042521 35 RSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----------GRDFIEIHNAYETLS 103 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------~~~~~~I~~Ay~vL~ 103 (147)
..++.+.......- ....+||+|||++. ++.++||++||++++++|||++++ .++|+.|++||++|+
T Consensus 24 ~~ir~lL~~l~~~l-~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLs 101 (106)
T 3ag7_A 24 GNIRSLLSTLQYIL-WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101 (106)
T ss_dssp TCHHHHHTTGGGTS-CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHc
Confidence 34666555522211 12479999999996 999999999999999999999642 467999999999999
Q ss_pred Cch
Q 042521 104 DPT 106 (147)
Q Consensus 104 d~~ 106 (147)
|+.
T Consensus 102 d~~ 104 (106)
T 3ag7_A 102 TLG 104 (106)
T ss_dssp TTC
T ss_pred Ccc
Confidence 985
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=1.6e-16 Score=107.33 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=47.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCC
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSD 104 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d 104 (147)
.++|++|||++.++.++||+|||++++++|||++++ .+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999764 3479999999999974
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.56 E-value=2.8e-16 Score=138.50 Aligned_cols=72 Identities=35% Similarity=0.478 Sum_probs=40.8
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
.....|||+||||+++|+.++||+|||++++++|||+++. .++|++|++||++|+||.+|..||+++..+..
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~ 92 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 92 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence 3446799999999999999999999999999999999853 56899999999999999999999999875544
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=7.9e-12 Score=79.09 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=48.7
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521 54 SLYEVLRVEPT---ATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP 105 (147)
Q Consensus 54 ~~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~ 105 (147)
..|.||||+++ ++.++|+++|++|+..+|||++++......|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999 99999999999999999999999999999999999999643
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.06 E-value=9.3e-11 Score=94.04 Aligned_cols=61 Identities=43% Similarity=0.614 Sum_probs=52.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhh
Q 042521 53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
.++|++||+...++.++|+++|+++++++|||+.+.. +.|+.|++||++|+|+++|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999999999999999999999999998764 379999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.63 E-value=0.17 Score=43.60 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=35.8
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 042521 52 GGSLYEVLRVEPTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYET 101 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~v 101 (147)
..+||.+||++-+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 3459999999776655 67999999999966554 5678888888765
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=69.64 E-value=12 Score=22.33 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHHHcCC-ch-HHHHHhhhhhc
Q 042521 68 SEIKTAYRSLAKVYHPDLSGN-GRDFIEI---HNAYETLSD-PT-ARAVYDMSLVG 117 (147)
Q Consensus 68 ~eIk~ayr~l~~~~HPDk~~~-~~~~~~I---~~Ay~vL~d-~~-~R~~YD~~~~~ 117 (147)
+|..++|.+|.+...-|..-+ ++.+..| ..-|.+|.| |. ++..|+.++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 567899999999886655545 4456666 348999997 65 78889988753
No 38
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=53.55 E-value=34 Score=20.97 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHH--HHHHcCC-chHHHHHhhhhhcc
Q 042521 64 TATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHN--AYETLSD-PTARAVYDMSLVGR 118 (147)
Q Consensus 64 ~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~--Ay~vL~d-~~~R~~YD~~~~~~ 118 (147)
-++.++.+.+|++|....+-+.... +.....|.. -|.+|.+ .+++..|+.+....
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 4589999999999999886554444 233344432 5777877 45677888877543
No 39
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.58 E-value=28 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
-+.+|...+.-||+.....+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677888889999753467789999999999977655544443
No 40
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=36.94 E-value=45 Score=20.36 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521 74 YRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRR 120 (147)
Q Consensus 74 yr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 120 (147)
-.++++..|||..-+.+....|+++.+.+-.......++......+.
T Consensus 10 V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rK 56 (76)
T 3b0c_W 10 LRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSK 56 (76)
T ss_dssp HHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46778889998766777888888888887777777777766554443
No 41
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=36.81 E-value=19 Score=25.20 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 042521 54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPD 84 (147)
Q Consensus 54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD 84 (147)
-++..|.|....+.+|++++=..+..++||+
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 3467778888889999999999999999998
No 42
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=36.30 E-value=59 Score=18.86 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777777888754 4667888999999998766544433
No 43
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=31.12 E-value=80 Score=18.31 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 72 TAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 72 ~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
+..|...+.-||+... ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455666778998654 3677899999999999877554444
No 44
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=29.78 E-value=73 Score=19.77 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.+.++..++.-||+. ...+..+.|.+.|..|++.++....+..-.
T Consensus 32 ~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~ 76 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAA 76 (90)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667777789983 356778999999999997766555554443
No 45
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=29.55 E-value=95 Score=18.65 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+.++..++.-||+.. ..+....|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777888899854 4677888999999998766544333
No 46
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.16 E-value=1e+02 Score=18.95 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHcCCc-hHHHHHhhhhhcc
Q 042521 66 TISEIKTAYRSLAKVYHPDLSGNG------RDFIEIHNAYETLSDP-TARAVYDMSLVGR 118 (147)
Q Consensus 66 s~~eIk~ayr~l~~~~HPDk~~~~------~~~~~I~~Ay~vL~d~-~~R~~YD~~~~~~ 118 (147)
-...++..|+.+.+...|...... ..|... .+|..+.++ .++..|+.++..-
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi~~L 65 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFMHVL 65 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHHHHH
Confidence 456788999999998877655441 223333 389999774 6788899888654
No 47
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.99 E-value=36 Score=22.22 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=22.7
Q ss_pred CcccccccC-CCCCHHHHHHHHHHHHHHhCCCC
Q 042521 54 SLYEVLRVE-PTATISEIKTAYRSLAKVYHPDL 85 (147)
Q Consensus 54 ~~Y~iLgv~-~~as~~eIk~ayr~l~~~~HPDk 85 (147)
+-|..|--. .+-++++|+.+|++|++.+|-..
T Consensus 56 ~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 56 HTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp TTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 344443332 25799999999999999997544
No 48
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.97 E-value=77 Score=19.40 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+..|...+.-||+... ..+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34566667778998764 3677899999999998766544333
No 49
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=27.15 E-value=1.2e+02 Score=18.84 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~ 58 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYL 58 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556677777899843 467788999999999987654433
No 50
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.97 E-value=89 Score=18.75 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 3456666777788753 467788999999999987766555543
No 51
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=26.71 E-value=1.1e+02 Score=18.40 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
.+.++..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677777889984 356778899999999997665444333
No 52
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=26.66 E-value=1e+02 Score=18.09 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556777778899864 46778899999999987 555543
No 53
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=1.3e+02 Score=20.88 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHcCCchHHH
Q 042521 71 KTAYRSLAKVYHPDLS-GNGRDFIEIHNAYETLSDPTARA 109 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~-~~~~~~~~I~~Ay~vL~d~~~R~ 109 (147)
.+.++...+.-||+.. ...+....|.+.|..|++.++..
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 66 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556677778899963 45677899999999999876533
No 54
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=22.90 E-value=1.2e+02 Score=18.50 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+.++..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 455667777788974 34677889999999999766544333
No 55
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.65 E-value=1.1e+02 Score=18.98 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHH
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAV 110 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~ 110 (147)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y 57 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKY 57 (92)
T ss_dssp HHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 4556667777899853 46777889999999987655443
No 56
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=22.30 E-value=1.3e+02 Score=17.71 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+..+..++.-||+. ...+....|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345566667779974 34677889999999999776544333
No 57
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.20 E-value=1.3e+02 Score=17.66 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHHHH
Confidence 4556667777899854 467789999999999866544333
No 58
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.29 E-value=71 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 042521 58 VLRVEPTATISEIKTAYRSLA 78 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~ 78 (147)
++-|++.|+..|||+|..++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999988764
No 59
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=20.28 E-value=79 Score=19.12 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHh
Q 042521 71 KTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYD 112 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD 112 (147)
.+..|..++.-||+... ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 61 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34556666677898653 4677889999999999876544433
Done!