Query 042521
Match_columns 147
No_of_seqs 215 out of 1251
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 12:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042521.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042521hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xbla_ a.2.3.1 (A:) DnaJ chap 99.9 3E-23 2.2E-27 134.0 8.8 66 52-117 2-71 (75)
2 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 99.9 3.5E-22 2.6E-26 129.5 7.9 67 52-118 2-71 (77)
3 d1gh6a_ a.2.3.1 (A:) Large T a 99.8 5.4E-23 3.9E-27 142.5 -0.3 66 52-117 7-74 (114)
4 d1wjza_ a.2.3.1 (A:) CSL-type 99.8 1.2E-21 9.1E-26 131.4 4.9 66 52-117 15-90 (94)
5 d1fafa_ a.2.3.1 (A:) Large T a 99.8 6.2E-21 4.5E-25 124.1 2.4 64 52-115 10-75 (79)
6 d1fpoa1 a.2.3.1 (A:1-76) HSC20 99.8 1.9E-19 1.4E-23 116.1 4.8 65 53-117 1-76 (76)
7 d1iura_ a.2.3.1 (A:) Hypotheti 99.6 3.2E-17 2.3E-21 108.3 3.8 63 51-116 14-81 (88)
8 d1nz6a_ a.2.3.1 (A:) Auxilin J 99.6 1.3E-17 9.5E-22 112.3 0.7 60 52-111 32-98 (98)
9 d2b7ea1 a.159.2.1 (A:4-59) Pre 87.6 0.8 5.9E-05 25.9 5.4 49 69-117 1-55 (56)
10 d1ny9a_ a.181.1.1 (A:) Transcr 45.4 27 0.0019 20.8 5.6 52 60-116 22-75 (94)
11 d1wgfa_ a.21.1.1 (A:) Nucleola 45.2 25 0.0018 20.4 5.4 45 71-116 32-76 (90)
12 d1r1ua_ a.4.5.5 (A:) Metal-sen 41.8 16 0.0011 21.9 3.9 29 88-116 1-29 (94)
13 d2lefa_ a.21.1.1 (A:) Lymphoid 33.3 23 0.0017 20.6 3.6 43 71-114 14-56 (86)
14 d2doda1 a.159.2.1 (A:651-719) 32.5 39 0.0028 18.9 4.6 54 64-117 6-62 (69)
15 d1i11a_ a.21.1.1 (A:) Sox-5 {M 32.2 29 0.0021 19.2 3.8 44 71-115 14-57 (70)
16 d1cf7a_ a.4.5.17 (A:) Cell cyc 30.5 15 0.0011 21.1 2.1 42 65-113 5-46 (67)
17 d1ckta_ a.21.1.1 (A:) High mob 29.9 41 0.003 18.3 5.4 39 72-110 14-53 (71)
18 d1ug2a_ a.4.1.3 (A:) 2610100b2 28.1 19 0.0014 22.0 2.5 23 64-86 67-89 (95)
19 d1r1ta_ a.4.5.5 (A:) SmtB repr 26.1 38 0.0027 20.1 3.8 29 88-116 6-34 (98)
20 d1uzca_ a.159.2.1 (A:) Hypa/FB 23.4 59 0.0043 18.0 5.6 54 64-117 9-66 (69)
21 d1vqos1 d.12.1.1 (S:1-81) Ribo 23.0 27 0.002 20.5 2.5 21 58-78 25-45 (81)
22 d1hsma_ a.21.1.1 (A:) High mob 22.7 62 0.0045 18.0 5.0 38 72-110 15-52 (79)
23 d1j46a_ a.21.1.1 (A:) SRY {Hum 22.2 48 0.0035 18.9 3.6 43 71-114 16-58 (85)
24 d1w53a_ a.186.1.2 (A:) Phospho 22.2 36 0.0026 20.2 3.0 26 61-86 38-63 (84)
25 d1aiea_ a.53.1.1 (A:) p53 tetr 22.0 31 0.0022 16.3 2.1 13 89-101 13-25 (31)
26 d1hcia4 a.7.1.1 (A:633-746) al 20.6 59 0.0043 19.1 4.0 43 67-109 60-102 (114)
27 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 20.5 32 0.0023 20.7 2.5 26 58-84 25-50 (93)
No 1
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=3e-23 Score=134.03 Aligned_cols=66 Identities=42% Similarity=0.603 Sum_probs=61.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.+|||+||||+++++.++||++|+++++++|||++.+ .+.|..|++||+||+||.+|..||+++..
T Consensus 2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 71 (75)
T d1xbla_ 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (75)
T ss_dssp CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 4699999999999999999999999999999999865 35699999999999999999999999754
No 2
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=3.5e-22 Score=129.45 Aligned_cols=67 Identities=39% Similarity=0.571 Sum_probs=62.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR 118 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 118 (147)
.+|||+||||+++++.++|+++|+++++++|||++.. .+.|..|++||+||+||.+|..||+++..+
T Consensus 2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~ 71 (77)
T d1hdja_ 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 3699999999999999999999999999999999776 467999999999999999999999987654
No 3
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=99.84 E-value=5.4e-23 Score=142.53 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=61.8
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..+||+||||+++| +.++||+||++|++++|||++++.++|++|++||+||+|+.+|..||..+..
T Consensus 7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~ 74 (114)
T d1gh6a_ 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence 46899999999998 7889999999999999999999999999999999999999999999987643
No 4
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.83 E-value=1.2e-21 Score=131.42 Aligned_cols=66 Identities=32% Similarity=0.644 Sum_probs=60.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----------GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
..|||+||||+++++.++||++|+++++++|||++.. .+.|+.|++||+||+||.+|..||..+.+
T Consensus 15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~ 90 (94)
T d1wjza_ 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence 4699999999999999999999999999999999764 24699999999999999999999998653
No 5
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=99.79 E-value=6.2e-21 Score=124.12 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=60.5
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521 52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSL 115 (147)
Q Consensus 52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 115 (147)
..++|+||||++++ +.++||+||+++++++|||+++++++|++|++||++|+|+.+|..||...
T Consensus 10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~~ 75 (79)
T d1fafa_ 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGG 75 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence 46899999999987 99999999999999999999999999999999999999999999998654
No 6
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=1.9e-19 Score=116.05 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=57.0
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521 53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 117 (147)
.|||+||||++. ++.++||++|+++++.+|||+... .+.|..|++||+||+||.+|..|+..+.+
T Consensus 1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g 76 (76)
T d1fpoa1 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (76)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 389999999985 458999999999999999998653 24588999999999999999999988753
No 7
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=3.2e-17 Score=108.33 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=54.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.-.++|+||||..+++.++||+||+++++++|||++++ .++|+.|++||++|++ +..||....
T Consensus 14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~ 81 (88)
T d1iura_ 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD 81 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence 34799999999999999999999999999999999875 4569999999999964 556665554
No 8
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.63 E-value=1.3e-17 Score=112.32 Aligned_cols=60 Identities=22% Similarity=0.449 Sum_probs=54.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHH
Q 042521 52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVY 111 (147)
Q Consensus 52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~Y 111 (147)
..++|++|||...++.++||++|+++++.+|||++.+ .+.|+.|++||++|+||.+|+.|
T Consensus 32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y 98 (98)
T d1nz6a_ 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98 (98)
T ss_dssp TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence 3578999999999999999999999999999998664 34699999999999999999876
No 9
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=87.61 E-value=0.8 Score=25.94 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC-hHHHHHH-H--HHHHHc-CCc-hHHHHHhhhhhc
Q 042521 69 EIKTAYRSLAKVYHPDLSGN-GRDFIEI-H--NAYETL-SDP-TARAVYDMSLVG 117 (147)
Q Consensus 69 eIk~ayr~l~~~~HPDk~~~-~~~~~~I-~--~Ay~vL-~d~-~~R~~YD~~~~~ 117 (147)
|.+++|+++.+..+-+-.-. ++.+..| . .-|..| .|| +++..||.++..
T Consensus 1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~ 55 (56)
T d2b7ea1 1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 55 (56)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhc
Confidence 46889999999886665555 4455644 2 689999 577 799999999864
No 10
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=45.39 E-value=27 Score=20.77 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=34.1
Q ss_pred ccCCCC-CHHHHHHHHHHHH-HHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 60 RVEPTA-TISEIKTAYRSLA-KVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 60 gv~~~a-s~~eIk~ayr~l~-~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
|++++. .-.+|-..+++.. ..++| .+.+.+..|-+-| +.||.=+..||+...
T Consensus 22 G~~p~s~~vq~lv~~H~~~i~~~~~~---~s~e~~~~Lg~mY--v~D~rF~~~yd~~~~ 75 (94)
T d1ny9a_ 22 GEPADSEGAMDAAEDHRQGIARNHYD---CGYEMHTCLGEMY--VSDERFTRNIDAAKP 75 (94)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHSSC---CCHHHHHHHHHHT--TSTHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHH--cCCHHHHHHHhccCc
Confidence 455543 2334444555444 44443 4678888888888 999999999998753
No 11
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.22 E-value=25 Score=20.37 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.+.++...+.-||+.. ..+....|.+.|..|++.++....+..-.
T Consensus 32 ~~e~r~~~~~~~p~~~-~~ei~k~l~~~W~~Ls~~eK~~Y~~~A~~ 76 (90)
T d1wgfa_ 32 SEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAREAA 76 (90)
T ss_dssp HHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445667777899854 35678899999999987665544444433
No 12
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=41.84 E-value=16 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 88 NGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 88 ~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
+.+.+.++.+.+++|+||.+.........
T Consensus 1 n~d~~e~~a~~fkaL~d~~Rl~Il~~L~~ 29 (94)
T d1r1ua_ 1 NTDTLERVTEIFKALGDYNRIRIMELLSV 29 (94)
T ss_dssp CHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 35778999999999999999988865543
No 13
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.25 E-value=23 Score=20.55 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 14 ~~~~r~~~~~~~P~~~-~~~Isk~lg~~Wk~ls~~eK~~y~~~A 56 (86)
T d2lefa_ 14 MKEMRANVVAESTLKE-SAAINQILGRRWHALSREEQAKYYELA 56 (86)
T ss_dssp HHHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4567888888999854 456778899999999977665555544
No 14
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.49 E-value=39 Score=18.91 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHHH-HHHHH--HHHHcCCchHHHHHhhhhhc
Q 042521 64 TATISEIKTAYRSLAKVYHPDLSGNGRDF-IEIHN--AYETLSDPTARAVYDMSLVG 117 (147)
Q Consensus 64 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~-~~I~~--Ay~vL~d~~~R~~YD~~~~~ 117 (147)
....++.+.+|+.|....+-+....=+.+ ..|.. -|.+|....++..|+.+...
T Consensus 6 ~~~~Ee~~~~Fk~LL~e~~i~~~~~W~~~~~k~~~DpRy~al~~~eRe~~F~e~~~~ 62 (69)
T d2doda1 6 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKT 62 (69)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhccCcccccCCHHHHHHHHHHHHHH
Confidence 45688999999999999876555443332 22221 45666666677777777653
No 15
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.17 E-value=29 Score=19.18 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSL 115 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 115 (147)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++...++..-
T Consensus 14 ~~~~r~~i~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~ 57 (70)
T d1i11a_ 14 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQA 57 (70)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3556777778888744 4667899999999999988877766543
No 16
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.49 E-value=15 Score=21.06 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhh
Q 042521 65 ATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDM 113 (147)
Q Consensus 65 as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 113 (147)
.+...+.+.|-.+.... |+. ...|++|-+.|.-.++|+.||-
T Consensus 5 kSLglLt~kFl~l~~~~-~~~------~~~L~~aa~~L~v~~kRRiYDI 46 (67)
T d1cf7a_ 5 KSLGLLTTKFVSLLQEA-KDG------VLDLKLAADTLAVRQKRRIYDI 46 (67)
T ss_dssp TCHHHHHHHHHHHHHHS-STT------EEEHHHHHHHTTTCCTHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-CCC------eeeHHHHHHHhcCcchhhHHHH
Confidence 45556777777776543 332 2347888899987678999994
No 17
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.93 E-value=41 Score=18.35 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchHHHH
Q 042521 72 TAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAV 110 (147)
Q Consensus 72 ~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~d~~~R~~ 110 (147)
+..|..++.-||+.... .+..+.|.+.|..|++.++...
T Consensus 14 ~~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~~eK~~y 53 (71)
T d1ckta_ 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 53 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34556667779987655 5778999999999998765443
No 18
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.07 E-value=19 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 042521 64 TATISEIKTAYRSLAKVYHPDLS 86 (147)
Q Consensus 64 ~as~~eIk~ayr~l~~~~HPDk~ 86 (147)
+-+..+|+.+|..|++.+|-...
T Consensus 67 ~Rs~~qvr~Rf~~Lm~lf~~~~e 89 (95)
T d1ug2a_ 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999986543
No 19
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=26.09 E-value=38 Score=20.11 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521 88 NGRDFIEIHNAYETLSDPTARAVYDMSLV 116 (147)
Q Consensus 88 ~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 116 (147)
.++.++.+.+.+++|+||.+.........
T Consensus 6 ~pe~~~~la~~~kaL~~p~Rl~Il~~L~~ 34 (98)
T d1r1ta_ 6 APEVAQSLAEFFAVLADPNRLRLLSLLAR 34 (98)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 35678899999999999999988875543
No 20
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.44 E-value=59 Score=18.03 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHHH-HHHH--HHHHHcCCc-hHHHHHhhhhhc
Q 042521 64 TATISEIKTAYRSLAKVYHPDLSGNGRDF-IEIH--NAYETLSDP-TARAVYDMSLVG 117 (147)
Q Consensus 64 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~-~~I~--~Ay~vL~d~-~~R~~YD~~~~~ 117 (147)
-++.++.+.+|++|....+-+....=+.+ ..|. .-|.+|.+. .++..|+.+...
T Consensus 9 ~~~keeak~~F~~LL~e~~v~~~~~W~~~~~~~~~DpRy~ai~~~~eRe~lF~ey~~~ 66 (69)
T d1uzca_ 9 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 66 (69)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhccCcchhhcCCHHHHHHHHHHHHHH
Confidence 46899999999999999865555443332 2222 256677664 567777777653
No 21
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=23.04 E-value=27 Score=20.48 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 042521 58 VLRVEPTATISEIKTAYRSLA 78 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~ 78 (147)
++-|+++|+..+||+|..++-
T Consensus 25 ~F~V~~~A~K~~IK~AVe~lf 45 (81)
T d1vqos1 25 QFAVDDRASKGEVADAVEEQY 45 (81)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEcCcCCHHHHHHHHHHHc
Confidence 567999999999999998775
No 22
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=22.70 E-value=62 Score=17.96 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHH
Q 042521 72 TAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAV 110 (147)
Q Consensus 72 ~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~ 110 (147)
+..|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 15 ~~~r~~i~~~~p~~~-~~ei~k~~~~~W~~ls~~eK~~y 52 (79)
T d1hsma_ 15 SEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 52 (79)
T ss_dssp HHHHHHHHHHCTTCC-TTTHHHHHHHHHHTSCSTTTHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHhhHHhcCCHHHHHHH
Confidence 344556667799864 45778999999999998765443
No 23
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.23 E-value=48 Score=18.91 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521 71 KTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMS 114 (147)
Q Consensus 71 k~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 114 (147)
.+.+|..++.-||+.. ..+....|.+.|..|++.++...++..
T Consensus 16 ~~~~r~~i~~~~p~~~-~~eisk~ig~~W~~L~~eeK~~y~~~A 58 (85)
T d1j46a_ 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEA 58 (85)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566778888899853 456788899999999987766555443
No 24
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.17 E-value=36 Score=20.16 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCC
Q 042521 61 VEPTATISEIKTAYRSLAKVYHPDLS 86 (147)
Q Consensus 61 v~~~as~~eIk~ayr~l~~~~HPDk~ 86 (147)
|..+.++++|-.-+++......|+..
T Consensus 38 iek~IsPEeIV~iHk~~l~el~~~~~ 63 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKELYPSLP 63 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHCTTSC
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCCh
Confidence 34577999999999999999999854
No 25
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=31 Score=16.33 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHH
Q 042521 89 GRDFIEIHNAYET 101 (147)
Q Consensus 89 ~~~~~~I~~Ay~v 101 (147)
.+.|++||+|.+.
T Consensus 13 femfrelnealel 25 (31)
T d1aiea_ 13 FEMFRELNEALEL 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3568899998864
No 26
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=59 Score=19.09 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHH
Q 042521 67 ISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARA 109 (147)
Q Consensus 67 ~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~ 109 (147)
...|...=.++....||+...-..+...|+..|+.|.+...++
T Consensus 60 i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R 102 (114)
T d1hcia4 60 IDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIART 102 (114)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666678888889987777889999999999999876554
No 27
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.46 E-value=32 Score=20.66 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=20.9
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCC
Q 042521 58 VLRVEPTATISEIKTAYRSLAKVYHPD 84 (147)
Q Consensus 58 iLgv~~~as~~eIk~ayr~l~~~~HPD 84 (147)
++-|+++|+..|||+|..++-. ..+.
T Consensus 25 ~F~V~~~atK~~Ik~ave~lf~-VkV~ 50 (93)
T d2zjrq1 25 SFWVSPKATKTEIKDAIQQAFG-VRVI 50 (93)
T ss_dssp EEEECSSCTHHHHHHHHHHHHC-CCCS
T ss_pred EEEEeCCCCHHHHHHHHHHHcC-CCeE
Confidence 5678999999999999988763 5554
Done!