Query 042524
Match_columns 365
No_of_seqs 193 out of 1620
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 7.4E-64 1.6E-68 453.7 28.5 264 9-326 2-266 (280)
2 COG0667 Tas Predicted oxidored 100.0 1.4E-61 3E-66 455.4 28.7 285 10-325 1-310 (316)
3 KOG1575 Voltage-gated shaker-l 100.0 7.9E-61 1.7E-65 441.6 27.2 297 6-330 8-331 (336)
4 KOG1577 Aldo/keto reductase fa 100.0 6.2E-60 1.3E-64 428.0 28.3 280 12-325 6-286 (300)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.2E-56 2.6E-61 414.6 29.8 251 19-324 1-252 (267)
6 TIGR01293 Kv_beta voltage-depe 100.0 9E-57 2E-61 425.5 28.3 284 12-322 1-316 (317)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 3.8E-56 8.1E-61 425.7 29.7 297 3-324 6-333 (346)
8 PRK10625 tas putative aldo-ket 100.0 3.4E-56 7.3E-61 426.5 28.5 304 10-324 1-339 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.2E-55 2.5E-60 409.4 30.3 259 11-325 5-263 (275)
10 PLN02587 L-galactose dehydroge 100.0 1.6E-53 3.4E-58 403.0 26.3 275 12-324 1-300 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 2.2E-52 4.7E-57 390.3 29.1 267 12-322 1-285 (285)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-52 7.2E-57 388.6 24.3 265 23-323 1-282 (283)
13 PRK10376 putative oxidoreducta 100.0 4.7E-51 1E-55 381.7 27.4 254 13-324 10-288 (290)
14 COG4989 Predicted oxidoreducta 100.0 3.7E-51 8E-56 355.4 18.1 265 10-323 1-292 (298)
15 PRK14863 bifunctional regulato 100.0 6.5E-50 1.4E-54 373.5 21.5 259 18-322 2-280 (292)
16 COG1453 Predicted oxidoreducta 100.0 1.3E-47 2.8E-52 351.0 20.2 284 10-348 1-325 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.5E-46 5.3E-51 327.5 17.5 279 5-322 17-320 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 9.1E-07 2E-11 77.7 7.8 78 143-220 150-228 (285)
19 PF07021 MetW: Methionine bios 88.1 7.7 0.00017 33.8 10.5 101 99-223 63-170 (193)
20 PRK10558 alpha-dehydro-beta-de 81.0 16 0.00035 33.4 10.0 67 155-222 10-79 (256)
21 COG1748 LYS9 Saccharopine dehy 80.5 9.1 0.0002 37.3 8.4 77 35-122 80-158 (389)
22 PRK10128 2-keto-3-deoxy-L-rham 77.3 29 0.00062 32.1 10.4 68 155-222 9-78 (267)
23 TIGR03239 GarL 2-dehydro-3-deo 74.2 29 0.00063 31.6 9.5 62 160-222 8-72 (249)
24 cd03316 MR_like Mandelate race 71.6 96 0.0021 29.6 14.8 147 33-219 140-298 (357)
25 cd01965 Nitrogenase_MoFe_beta_ 69.4 90 0.0019 30.8 12.6 108 56-187 62-184 (428)
26 COG0635 HemN Coproporphyrinoge 68.9 56 0.0012 32.2 10.8 114 21-174 148-276 (416)
27 cd06543 GH18_PF-ChiA-like PF-C 67.5 1.1E+02 0.0024 28.7 13.1 181 14-223 62-264 (294)
28 cd01973 Nitrogenase_VFe_beta_l 67.1 80 0.0017 31.5 11.7 114 55-187 66-190 (454)
29 PRK04452 acetyl-CoA decarbonyl 65.7 59 0.0013 30.8 9.8 53 167-222 129-185 (319)
30 cd03319 L-Ala-DL-Glu_epimerase 64.6 1.3E+02 0.0027 28.3 14.3 147 33-222 135-289 (316)
31 TIGR00381 cdhD CO dehydrogenas 63.4 1.5E+02 0.0033 28.8 12.9 74 148-223 173-251 (389)
32 PRK13796 GTPase YqeH; Provisio 62.4 1.5E+02 0.0033 28.6 12.5 119 33-181 56-180 (365)
33 COG1140 NarY Nitrate reductase 61.6 5.2 0.00011 38.3 1.9 53 161-214 263-317 (513)
34 TIGR01278 DPOR_BchB light-inde 60.2 1E+02 0.0022 31.3 11.1 146 57-222 67-243 (511)
35 PRK08609 hypothetical protein; 59.4 2.2E+02 0.0048 29.4 14.2 152 35-216 350-522 (570)
36 PF02679 ComA: (2R)-phospho-3- 59.4 46 0.00099 30.3 7.5 79 33-120 83-169 (244)
37 cd01976 Nitrogenase_MoFe_alpha 59.2 1.7E+02 0.0037 28.8 12.3 114 56-187 79-200 (421)
38 cd01974 Nitrogenase_MoFe_beta 59.0 1.9E+02 0.004 28.7 12.6 110 55-188 65-190 (435)
39 TIGR02311 HpaI 2,4-dihydroxyhe 57.4 1.1E+02 0.0023 27.9 9.8 64 157-221 5-71 (249)
40 cd00739 DHPS DHPS subgroup of 56.7 1.6E+02 0.0034 26.9 11.3 105 92-219 22-127 (257)
41 cd07944 DRE_TIM_HOA_like 4-hyd 56.5 68 0.0015 29.5 8.4 109 91-218 17-128 (266)
42 PRK05283 deoxyribose-phosphate 56.4 1.2E+02 0.0027 27.8 9.8 85 23-113 135-227 (257)
43 COG1751 Uncharacterized conser 56.0 1.1E+02 0.0023 25.8 8.3 76 148-223 12-94 (186)
44 PRK08392 hypothetical protein; 55.3 1.5E+02 0.0032 26.1 18.4 151 35-217 15-179 (215)
45 TIGR02026 BchE magnesium-proto 54.9 1E+02 0.0022 31.1 10.1 75 147-221 223-306 (497)
46 cd03174 DRE_TIM_metallolyase D 54.4 65 0.0014 29.1 8.0 102 92-219 17-135 (265)
47 TIGR00216 ispH_lytB (E)-4-hydr 54.4 91 0.002 29.0 8.8 116 153-304 145-273 (280)
48 PRK02910 light-independent pro 53.5 2E+02 0.0043 29.3 11.9 145 57-222 67-243 (519)
49 PRK12360 4-hydroxy-3-methylbut 53.0 94 0.002 28.9 8.6 107 162-304 157-274 (281)
50 PRK01045 ispH 4-hydroxy-3-meth 51.1 1.1E+02 0.0025 28.6 9.0 107 162-304 156-275 (298)
51 PRK07535 methyltetrahydrofolat 50.9 1.3E+02 0.0029 27.6 9.3 102 92-220 23-124 (261)
52 PRK08446 coproporphyrinogen II 50.5 1.4E+02 0.0029 28.7 9.8 74 87-174 158-231 (350)
53 TIGR01496 DHPS dihydropteroate 49.5 2.1E+02 0.0045 26.2 11.8 104 91-219 20-125 (257)
54 TIGR00126 deoC deoxyribose-pho 47.0 1.2E+02 0.0025 27.0 8.0 78 25-111 123-205 (211)
55 PRK08195 4-hyroxy-2-oxovalerat 46.9 2.7E+02 0.0058 26.6 17.1 36 14-54 10-45 (337)
56 cd00308 enolase_like Enolase-s 46.9 1.1E+02 0.0023 27.2 8.0 70 152-223 134-207 (229)
57 PRK07534 methionine synthase I 46.7 2.7E+02 0.0058 26.6 19.5 163 28-218 38-238 (336)
58 PRK06740 histidinol-phosphatas 46.3 2.3E+02 0.0049 27.0 10.4 113 98-217 156-289 (331)
59 cd00423 Pterin_binding Pterin 46.0 2.3E+02 0.0051 25.7 11.1 107 91-220 21-128 (258)
60 PF03102 NeuB: NeuB family; I 45.6 71 0.0015 29.0 6.5 116 31-178 53-186 (241)
61 PRK05660 HemN family oxidoredu 45.6 2.7E+02 0.0059 26.9 11.1 77 87-174 167-243 (378)
62 PRK07094 biotin synthase; Prov 45.6 1.8E+02 0.0039 27.2 9.7 69 148-218 72-145 (323)
63 cd01966 Nitrogenase_NifN_1 Nit 45.4 2.3E+02 0.005 27.9 10.7 108 56-187 62-186 (417)
64 cd07948 DRE_TIM_HCS Saccharomy 45.0 1.5E+02 0.0033 27.1 8.8 99 91-219 19-132 (262)
65 cd03322 rpsA The starvation se 44.8 74 0.0016 30.6 7.0 68 152-221 203-274 (361)
66 PRK07945 hypothetical protein; 44.3 2.9E+02 0.0063 26.3 14.5 150 33-215 110-287 (335)
67 TIGR01282 nifD nitrogenase mol 44.0 3.5E+02 0.0075 27.1 12.5 148 56-222 112-288 (466)
68 PF04476 DUF556: Protein of un 43.5 2.5E+02 0.0054 25.4 13.9 147 41-215 14-183 (235)
69 cd00740 MeTr MeTr subgroup of 43.4 2.6E+02 0.0056 25.5 10.6 104 91-220 23-127 (252)
70 PRK05692 hydroxymethylglutaryl 43.0 1.2E+02 0.0026 28.3 7.8 99 96-218 27-139 (287)
71 TIGR01228 hutU urocanate hydra 42.9 72 0.0016 32.0 6.4 127 38-195 107-258 (545)
72 PRK00164 moaA molybdenum cofac 42.6 2.9E+02 0.0064 25.9 13.6 160 33-218 51-229 (331)
73 PRK05414 urocanate hydratase; 42.4 76 0.0017 31.9 6.5 127 38-195 116-267 (556)
74 PF00682 HMGL-like: HMGL-like 42.4 2.4E+02 0.0053 24.9 11.9 168 31-222 11-193 (237)
75 PF02401 LYTB: LytB protein; 40.6 83 0.0018 29.3 6.3 115 154-304 145-274 (281)
76 CHL00076 chlB photochlorophyll 39.7 4E+02 0.0086 27.1 11.6 146 57-222 67-248 (513)
77 cd07943 DRE_TIM_HOA 4-hydroxy- 39.3 1.2E+02 0.0026 27.7 7.2 107 91-218 19-131 (263)
78 COG0159 TrpA Tryptophan syntha 38.6 3.2E+02 0.0069 25.2 10.4 73 148-222 78-157 (265)
79 COG1831 Predicted metal-depend 38.6 1.7E+02 0.0037 27.0 7.7 68 146-213 104-185 (285)
80 PF11242 DUF2774: Protein of u 38.6 42 0.00091 23.4 2.9 22 263-284 15-36 (63)
81 cd01967 Nitrogenase_MoFe_alpha 38.2 2.5E+02 0.0055 27.2 9.8 107 56-186 68-187 (406)
82 cd07938 DRE_TIM_HMGL 3-hydroxy 38.1 3E+02 0.0064 25.4 9.6 36 14-54 5-40 (274)
83 PF00682 HMGL-like: HMGL-like 37.4 1.6E+02 0.0034 26.2 7.6 96 95-217 14-126 (237)
84 COG0761 lytB 4-Hydroxy-3-methy 36.5 1.9E+02 0.0042 26.9 7.8 76 193-304 195-277 (294)
85 PRK07379 coproporphyrinogen II 35.7 3.7E+02 0.008 26.2 10.4 75 89-174 177-255 (400)
86 COG1168 MalY Bifunctional PLP- 35.5 4.3E+02 0.0093 25.7 11.5 151 33-222 40-201 (388)
87 PRK15072 bifunctional D-altron 35.0 1.4E+02 0.003 29.3 7.3 68 152-221 246-317 (404)
88 PRK09058 coproporphyrinogen II 34.9 3.5E+02 0.0076 26.9 10.2 107 21-172 174-302 (449)
89 KOG0259 Tyrosine aminotransfer 34.4 4.6E+02 0.0099 25.7 13.0 151 27-223 75-243 (447)
90 COG3623 SgaU Putative L-xylulo 34.3 87 0.0019 28.3 5.0 71 16-87 65-156 (287)
91 TIGR00190 thiC thiamine biosyn 34.2 2.3E+02 0.0051 27.7 8.2 106 36-180 79-191 (423)
92 cd03325 D-galactonate_dehydrat 34.1 1.8E+02 0.0038 27.9 7.7 66 152-219 216-285 (352)
93 PRK13958 N-(5'-phosphoribosyl) 34.0 1.5E+02 0.0032 26.1 6.7 32 162-195 51-83 (207)
94 cd03318 MLE Muconate Lactonizi 33.8 1.1E+02 0.0023 29.5 6.2 68 152-221 228-299 (365)
95 COG1149 MinD superfamily P-loo 33.6 64 0.0014 29.8 4.2 50 172-223 201-250 (284)
96 PRK14017 galactonate dehydrata 33.6 1.6E+02 0.0035 28.5 7.5 67 152-220 217-287 (382)
97 COG2089 SpsE Sialic acid synth 33.6 4.3E+02 0.0094 25.2 12.4 115 33-183 89-225 (347)
98 PF00809 Pterin_bind: Pterin b 33.6 1.9E+02 0.0041 25.4 7.3 68 148-221 56-125 (210)
99 cd00959 DeoC 2-deoxyribose-5-p 33.2 1.7E+02 0.0036 25.5 6.9 78 25-109 122-202 (203)
100 PRK13347 coproporphyrinogen II 33.1 3.3E+02 0.0071 27.1 9.7 113 21-172 163-289 (453)
101 COG4626 Phage terminase-like p 32.9 1.4E+02 0.003 30.5 6.8 76 147-222 411-486 (546)
102 cd03327 MR_like_2 Mandelate ra 32.7 1.3E+02 0.0028 28.7 6.5 66 152-219 211-280 (341)
103 PLN02489 homocysteine S-methyl 32.6 4.4E+02 0.0096 25.1 19.8 214 33-309 54-333 (335)
104 PLN02746 hydroxymethylglutaryl 32.6 2.3E+02 0.005 27.2 8.1 100 95-218 68-181 (347)
105 cd07943 DRE_TIM_HOA 4-hydroxy- 32.2 3.9E+02 0.0084 24.3 16.3 165 14-222 7-197 (263)
106 TIGR02660 nifV_homocitr homoci 32.2 3.3E+02 0.0072 26.2 9.3 97 91-217 20-131 (365)
107 cd00668 Ile_Leu_Val_MetRS_core 32.0 63 0.0014 30.3 4.2 48 93-166 81-131 (312)
108 PF01175 Urocanase: Urocanase; 31.6 1.2E+02 0.0027 30.5 6.1 128 37-195 105-257 (546)
109 PRK00087 4-hydroxy-3-methylbut 31.1 2.1E+02 0.0046 30.0 8.2 113 155-303 147-270 (647)
110 TIGR02534 mucon_cyclo muconate 30.6 1.6E+02 0.0034 28.4 6.8 69 152-222 227-299 (368)
111 cd03315 MLE_like Muconate lact 30.3 4.1E+02 0.009 24.0 15.6 150 34-223 87-242 (265)
112 COG2200 Rtn c-di-GMP phosphodi 30.1 2.8E+02 0.0061 25.1 8.0 130 60-218 69-212 (256)
113 PRK08208 coproporphyrinogen II 29.9 4.8E+02 0.01 25.7 10.2 75 86-174 200-275 (430)
114 PF14502 HTH_41: Helix-turn-he 29.9 1.1E+02 0.0023 20.3 3.6 31 261-291 6-38 (48)
115 cd01981 Pchlide_reductase_B Pc 29.6 5.5E+02 0.012 25.2 12.4 62 161-222 162-247 (430)
116 PRK02842 light-independent pro 29.3 4.6E+02 0.01 25.8 10.0 108 57-187 78-193 (427)
117 cd07948 DRE_TIM_HCS Saccharomy 29.2 4.5E+02 0.0097 24.0 13.0 137 14-182 7-148 (262)
118 PRK13352 thiamine biosynthesis 29.1 3.3E+02 0.0071 26.9 8.3 83 90-215 139-222 (431)
119 PF14606 Lipase_GDSL_3: GDSL-l 28.7 90 0.002 26.9 4.2 113 7-121 19-146 (178)
120 PRK00730 rnpA ribonuclease P; 28.6 3.1E+02 0.0068 22.5 7.1 46 76-122 46-93 (138)
121 PRK14457 ribosomal RNA large s 28.6 5.3E+02 0.012 24.7 13.3 146 62-223 166-330 (345)
122 TIGR00289 conserved hypothetic 28.5 3.5E+02 0.0075 24.2 8.1 84 202-324 75-168 (222)
123 TIGR01928 menC_lowGC/arch o-su 28.3 2.4E+02 0.0053 26.5 7.5 71 151-223 211-285 (324)
124 PRK06361 hypothetical protein; 28.2 4E+02 0.0086 23.1 14.3 183 34-282 10-200 (212)
125 TIGR03597 GTPase_YqeH ribosome 28.1 5.5E+02 0.012 24.7 11.7 83 76-181 90-174 (360)
126 PRK13753 dihydropteroate synth 27.7 5E+02 0.011 24.1 10.8 106 92-222 23-129 (279)
127 TIGR03217 4OH_2_O_val_ald 4-hy 27.6 5.4E+02 0.012 24.5 17.5 36 14-54 9-44 (333)
128 PRK14476 nitrogenase molybdenu 27.2 4.5E+02 0.0096 26.3 9.4 109 55-187 72-197 (455)
129 cd01977 Nitrogenase_VFe_alpha 26.9 3.3E+02 0.0071 26.7 8.4 116 55-187 67-190 (415)
130 PRK08645 bifunctional homocyst 26.9 7.4E+02 0.016 25.8 18.5 211 33-308 42-286 (612)
131 TIGR01428 HAD_type_II 2-haloal 26.3 1.7E+02 0.0036 25.0 5.6 38 148-186 94-131 (198)
132 COG2987 HutU Urocanate hydrata 26.1 1.1E+02 0.0023 30.4 4.5 103 60-194 151-266 (561)
133 COG3215 PilZ Tfp pilus assembl 26.0 93 0.002 24.1 3.3 63 37-105 23-105 (117)
134 PF06506 PrpR_N: Propionate ca 25.8 67 0.0015 27.3 3.0 66 148-218 63-131 (176)
135 PF14871 GHL6: Hypothetical gl 25.7 68 0.0015 26.1 2.8 21 202-222 47-67 (132)
136 COG0563 Adk Adenylate kinase a 25.5 4.3E+02 0.0092 22.6 8.4 80 24-122 4-88 (178)
137 cd01971 Nitrogenase_VnfN_like 25.4 5.3E+02 0.012 25.3 9.6 109 56-188 67-189 (427)
138 cd01968 Nitrogenase_NifE_I Nit 25.4 6.4E+02 0.014 24.6 10.4 110 54-187 65-186 (410)
139 TIGR01182 eda Entner-Doudoroff 25.1 2.4E+02 0.0052 24.9 6.3 60 151-217 46-106 (204)
140 PRK13602 putative ribosomal pr 25.0 1.5E+02 0.0033 21.8 4.3 58 155-219 3-60 (82)
141 cd00818 IleRS_core catalytic c 24.8 92 0.002 29.7 4.0 47 94-165 87-135 (338)
142 TIGR01862 N2-ase-Ialpha nitrog 24.6 1.7E+02 0.0038 29.0 6.0 114 56-188 98-220 (443)
143 PRK01222 N-(5'-phosphoribosyl) 24.4 2.6E+02 0.0056 24.6 6.5 50 162-216 53-104 (210)
144 cd07939 DRE_TIM_NifV Streptomy 24.3 5.3E+02 0.012 23.3 9.4 96 91-218 17-129 (259)
145 TIGR01163 rpe ribulose-phospha 24.1 3.9E+02 0.0085 22.9 7.7 64 152-217 45-109 (210)
146 PRK14459 ribosomal RNA large s 24.0 6.8E+02 0.015 24.4 9.8 76 148-223 264-359 (373)
147 TIGR02090 LEU1_arch isopropylm 24.0 3.1E+02 0.0066 26.5 7.4 37 14-55 7-43 (363)
148 KOG0077 Vesicle coat complex C 23.9 2.2E+02 0.0047 24.5 5.4 39 148-186 7-45 (193)
149 cd00885 cinA Competence-damage 23.8 3E+02 0.0065 23.3 6.6 61 39-104 24-84 (170)
150 KOG1549 Cysteine desulfurase N 23.8 7.2E+02 0.016 24.6 10.7 72 152-223 145-222 (428)
151 PRK08195 4-hyroxy-2-oxovalerat 23.7 6.4E+02 0.014 24.0 10.4 109 90-218 21-134 (337)
152 COG0274 DeoC Deoxyribose-phosp 23.5 5.5E+02 0.012 23.1 8.3 81 21-110 127-212 (228)
153 PF03102 NeuB: NeuB family; I 23.2 2.9E+02 0.0062 25.1 6.6 20 202-222 59-78 (241)
154 PRK14478 nitrogenase molybdenu 23.2 7.7E+02 0.017 24.7 10.3 109 56-187 100-219 (475)
155 TIGR01860 VNFD nitrogenase van 23.2 4.6E+02 0.01 26.2 8.7 114 56-188 107-230 (461)
156 TIGR01502 B_methylAsp_ase meth 23.1 3.8E+02 0.0082 26.4 7.9 70 151-222 280-358 (408)
157 COG4130 Predicted sugar epimer 22.9 1.9E+02 0.0041 25.9 5.0 52 172-223 49-107 (272)
158 cd04740 DHOD_1B_like Dihydroor 22.8 6E+02 0.013 23.3 15.3 160 33-213 101-286 (296)
159 cd08562 GDPD_EcUgpQ_like Glyce 22.7 5.1E+02 0.011 22.5 14.2 19 202-220 189-207 (229)
160 TIGR02931 anfK_nitrog Fe-only 22.7 5.4E+02 0.012 25.7 9.1 113 55-187 72-197 (461)
161 PF00155 Aminotran_1_2: Aminot 22.7 6.3E+02 0.014 23.6 11.0 60 164-223 117-192 (363)
162 PRK06015 keto-hydroxyglutarate 22.6 2.5E+02 0.0054 24.7 5.9 60 151-217 42-102 (201)
163 PLN03228 methylthioalkylmalate 22.6 4.2E+02 0.0092 26.9 8.3 22 95-116 106-127 (503)
164 COG5310 Homospermidine synthas 22.6 3.7E+02 0.0079 25.8 7.1 73 38-122 51-124 (481)
165 TIGR01579 MiaB-like-C MiaB-lik 22.5 2.8E+02 0.006 27.2 6.9 23 146-169 167-189 (414)
166 PF01487 DHquinase_I: Type I 3 22.4 5.3E+02 0.012 22.6 11.2 82 29-116 70-151 (224)
167 TIGR00035 asp_race aspartate r 22.3 2.4E+02 0.0052 25.0 6.0 79 93-182 16-95 (229)
168 PF13378 MR_MLE_C: Enolase C-t 22.2 1.2E+02 0.0025 23.4 3.5 49 170-220 3-54 (111)
169 PRK06294 coproporphyrinogen II 22.2 7.1E+02 0.015 23.9 9.8 78 87-174 163-243 (370)
170 cd08583 PI-PLCc_GDPD_SF_unchar 22.0 5.6E+02 0.012 22.7 11.0 19 202-220 195-213 (237)
171 COG2102 Predicted ATPases of P 22.0 1.4E+02 0.003 26.8 4.1 70 148-223 75-146 (223)
172 KOG1196 Predicted NAD-dependen 21.9 1.5E+02 0.0032 28.0 4.5 20 148-167 291-310 (343)
173 PRK08776 cystathionine gamma-s 21.8 7.5E+02 0.016 24.1 10.2 73 151-224 112-187 (405)
174 PF09012 FeoC: FeoC like trans 21.1 1.2E+02 0.0026 21.3 3.0 25 148-172 28-52 (69)
175 cd03323 D-glucarate_dehydratas 21.1 3.2E+02 0.0069 26.7 7.0 68 152-221 250-321 (395)
176 PLN02363 phosphoribosylanthran 20.9 2.8E+02 0.0062 25.3 6.1 31 163-195 99-130 (256)
177 cd03466 Nitrogenase_NifN_2 Nit 20.8 7.6E+02 0.016 24.3 9.7 109 56-188 65-184 (429)
178 PRK04390 rnpA ribonuclease P; 20.4 4.4E+02 0.0096 20.9 7.5 47 76-122 44-92 (120)
179 cd08319 Death_RAIDD Death doma 20.2 1.5E+02 0.0032 22.0 3.4 70 96-193 12-81 (83)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.4e-64 Score=453.74 Aligned_cols=264 Identities=48% Similarity=0.827 Sum_probs=243.5
Q ss_pred CCceEEcCCCCccCcceeecccCChhH-HHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 042524 9 GSSYFVLNTGAKIPAIGLGTWQTGGEL-CVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLY 87 (365)
Q Consensus 9 ~m~~~~l~tg~~vs~lglG~~~~~~~~-~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~ 87 (365)
.|.+.+|++|.+||.||||||+++..+ +.+.+.+|++.|+|+||||..||+|+.+|+++++. +++|+++||+||+|
T Consensus 2 ~~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v~ReelFittKvw 78 (280)
T COG0656 2 MKTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GVPREELFITTKVW 78 (280)
T ss_pred CCceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CCCHHHeEEEeecC
Confidence 356678888999999999999998766 99999999999999999999999999999999986 88999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEE
Q 042524 88 CSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAI 167 (365)
Q Consensus 88 ~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~i 167 (365)
+...+.+.+.+++++||+|||+||||||+||||... . +..++++|++|++++++||||+|
T Consensus 79 ~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~--~------------------~~~~~etw~alE~l~~~G~ir~I 138 (280)
T COG0656 79 PSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN--K------------------YVVIEETWKALEELVDEGLIRAI 138 (280)
T ss_pred CccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc--c------------------CccHHHHHHHHHHHHhcCCccEE
Confidence 998899999999999999999999999999999751 0 00168999999999999999999
Q ss_pred EecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 042524 168 GVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRIS 247 (365)
Q Consensus 168 GvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~ 247 (365)
|||||+.++++++++...+.|++||++||++.++.+++++|+++||.+++||||++|+.
T Consensus 139 GVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~~--------------------- 197 (280)
T COG0656 139 GVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGGK--------------------- 197 (280)
T ss_pred EeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCcccccc---------------------
Confidence 99999999999999998899999999999999999999999999999999999997431
Q ss_pred cccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCCCeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhcccccc
Q 042524 248 FRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEPQV 326 (365)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~~~ 326 (365)
+...+.+.++|++||.|++|++|+|++++|.++||.+++++|++||++++++.||+||++.|+++....
T Consensus 198 ----------l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 198 ----------LLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred ----------cccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 122378999999999999999999999999999999999999999999999999999999999998743
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.4e-61 Score=455.36 Aligned_cols=285 Identities=31% Similarity=0.482 Sum_probs=244.5
Q ss_pred CceEEc-CCCCccCcceeecccCCh-------hHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCC
Q 042524 10 SSYFVL-NTGAKIPAIGLGTWQTGG-------ELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKRE 78 (365)
Q Consensus 10 m~~~~l-~tg~~vs~lglG~~~~~~-------~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~ 78 (365)
|+|++| ++|++||+||||||.++. +++.++|++|+++||||||||+.||. |++||+||++. +. |+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~~-Rd 76 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---GR-RD 76 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---CC-CC
Confidence 889999 899999999999999882 25567999999999999999999995 99999999975 32 89
Q ss_pred cEEEEeecCCCC----------CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHH
Q 042524 79 DVFLTSTLYCSM----------NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRL 148 (365)
Q Consensus 79 ~v~I~tK~~~~~----------~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (365)
+++|+||++... .++++|+++++.||+|||||||||||+||||. .+| .
T Consensus 77 ~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~---------~~p-------------~ 134 (316)
T COG0667 77 KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDP---------ETP-------------I 134 (316)
T ss_pred eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC---------CCC-------------H
Confidence 999999996532 47999999999999999999999999999998 345 8
Q ss_pred HHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCCCCCCC
Q 042524 149 KKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPLGVPTS 226 (365)
Q Consensus 149 ~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spla~G~l 226 (365)
++++.+|.+|+++||||+||+||++++++.++.+.+ .+++++|.+||+++|+ .+++++|+++||++++||||++ |+
T Consensus 135 ~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~ 212 (316)
T COG0667 135 EETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GL 212 (316)
T ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cc
Confidence 899999999999999999999999999999999986 4569999999999976 4589999999999999999999 78
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhh
Q 042524 227 SPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNI 304 (365)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl 304 (365)
|+|++..+ +.+.+... .+.+..............++++|+++|+|++|+||+|++++| +++|+|+++++||++|+
T Consensus 213 Ltgk~~~~--~~~~r~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~ 289 (316)
T COG0667 213 LTGKYLPG--PEGSRASE-LPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENL 289 (316)
T ss_pred cCCCcCCC--cchhhccc-cccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHH
Confidence 88888764 11111110 011111122333444577999999999999999999999997 68999999999999999
Q ss_pred cccCCcCCHHHHHHHhccccc
Q 042524 305 DIFSWSLSDDEWNRLNQIEPQ 325 (365)
Q Consensus 305 ~a~~~~Lt~e~~~~l~~~~~~ 325 (365)
+++++.|++++++.|++....
T Consensus 290 ~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 290 AALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHhcCCCCHHHHHHHHHHhhh
Confidence 999999999999999988763
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.9e-61 Score=441.65 Aligned_cols=297 Identities=28% Similarity=0.407 Sum_probs=254.6
Q ss_pred CCCCCceEEc-CCCCccCcceeecccC-------ChhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCC
Q 042524 6 ASPGSSYFVL-NTGAKIPAIGLGTWQT-------GGELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGS 74 (365)
Q Consensus 6 ~~~~m~~~~l-~tg~~vs~lglG~~~~-------~~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~ 74 (365)
....|.|+.+ ++|++||++|||||.+ +++++.+++++|+++|+||||||++||+ |.++|++++++ +
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~ 84 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G 84 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C
Confidence 4556999999 9999999999999532 2688999999999999999999999996 99999999987 6
Q ss_pred CCCCcEEEEeecCCCC-------CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHH
Q 042524 75 LKREDVFLTSTLYCSM-------NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNR 147 (365)
Q Consensus 75 ~~R~~v~I~tK~~~~~-------~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (365)
.+|+++||+||++... .+...+...++.||+|||++||||||+||+|+ .+|
T Consensus 85 ~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~---------~~p------------- 142 (336)
T KOG1575|consen 85 WRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDP---------MVP------------- 142 (336)
T ss_pred CcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCC---------CCC-------------
Confidence 7899999999996432 46788999999999999999999999999998 356
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch---hHHHHHHHHcCcEEEEecCCCCC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSAHTPLGVP 224 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via~spla~G 224 (365)
+++++++|.+++++||||+||+|+++++++.++...++++++++|++||++.|+ .+++++|++.||++++||||++
T Consensus 143 iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~- 221 (336)
T KOG1575|consen 143 IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR- 221 (336)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-
Confidence 999999999999999999999999999999999999988889999999999987 5699999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccc--ccCC--CCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHH
Q 042524 225 TSSPGTSDSGSGGEDETGTPRISFRR--SRSV--HGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPD 298 (365)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ 298 (365)
|+++|++............ ..+.. .+.. ......++.+.++|+++|+|++|+||+|+++++ +++|||+++++
T Consensus 222 G~Ltgk~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve 299 (336)
T KOG1575|consen 222 GLLTGKYKLGEDSRNGDKR--FQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIE 299 (336)
T ss_pred ceeccCccccccccccccc--ccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHH
Confidence 7889988765332221111 11111 0110 112334578999999999999999999999997 78999999999
Q ss_pred HHHHhhcccCCcCCHHHHHHHhcccccccccC
Q 042524 299 RIRKNIDIFSWSLSDDEWNRLNQIEPQVCLFG 330 (365)
Q Consensus 299 ql~enl~a~~~~Lt~e~~~~l~~~~~~~~~~~ 330 (365)
||+||++|+.+.||++++.+|+++.+.....+
T Consensus 300 ~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 300 QLKENIGALSVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHhhccccCcC
Confidence 99999999999999999999999988654433
No 4
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=6.2e-60 Score=428.00 Aligned_cols=280 Identities=48% Similarity=0.807 Sum_probs=247.7
Q ss_pred eEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhc-CCCCCCcEEEEeecCCCC
Q 042524 12 YFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFK-GSLKREDVFLTSTLYCSM 90 (365)
Q Consensus 12 ~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~-~~~~R~~v~I~tK~~~~~ 90 (365)
+.+|++|.++|.||||||+....++.++++.|++.|+++||||..|+||+.+|++|++.+. .+++|+++||+||+|+..
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 6788999999999999999888899999999999999999999999999999999999885 578999999999999988
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
+.++.++.++++||++||+||+|+|++|||-. ... ..|.....+......+..++|++||+++++|++|+||||
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~--~k~----~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVS 159 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVA--FKD----SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVS 159 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccc--cCC----CCCcccccccccccchHHHHHHHHHHHHHcCCceEeeee
Confidence 89999999999999999999999999999976 211 011000000000112478999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRR 250 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (365)
||+..++++++..+.++|.++|++++++.++.+++++|+++||.+.|||||++++-.
T Consensus 160 NF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~----------------------- 216 (300)
T KOG1577|consen 160 NFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRG----------------------- 216 (300)
T ss_pred cCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCc-----------------------
Confidence 999999999999999999999999999999999999999999999999999984210
Q ss_pred ccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCCCeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhccccc
Q 042524 251 SRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEPQ 325 (365)
Q Consensus 251 ~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~~ 325 (365)
. .+...+.+.++|++|+.|++|++|||++++|++|||.++++++++||++++++.||+||++.|+.....
T Consensus 217 ----~-~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~ 286 (300)
T KOG1577|consen 217 ----S-DLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSN 286 (300)
T ss_pred ----c-ccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccc
Confidence 0 233348999999999999999999999999999999999999999999999999999999999977654
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.2e-56 Score=414.63 Aligned_cols=251 Identities=33% Similarity=0.592 Sum_probs=227.5
Q ss_pred CccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHH
Q 042524 19 AKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIEN 98 (365)
Q Consensus 19 ~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~ 98 (365)
++||.||||||+++.+++.+++++|++.|||+||||+.||+|..+|++|++. +++|+++||+||++....+++.+++
T Consensus 1 ~~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GVPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CCChhHeEEEEEeCCCCCCHHHHHH
Confidence 3699999999999888899999999999999999999999999999999865 5679999999999766678899999
Q ss_pred HHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHH
Q 042524 99 YVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIK 178 (365)
Q Consensus 99 ~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~ 178 (365)
++++||+|||+||||+|++|||+... ..+ .+++|++|++|+++||||+||+|||+.++++
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~-------~~~-------------~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~ 137 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPND-------EVS-------------VEEFMQALLEAKKQGLTREIGISNFTIALMK 137 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCC-------CCC-------------HHHHHHHHHHHHHCCCCCEEEEccCCHHHHH
Confidence 99999999999999999999997510 012 6789999999999999999999999999999
Q ss_pred HHHHHcCC-CCcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 042524 179 ELLKFAKI-MPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGP 257 (365)
Q Consensus 179 ~~~~~~~~-~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (365)
++++.... +++++|++||++.++.+++++|+++||++++|+||++|.++.
T Consensus 138 ~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~~~~----------------------------- 188 (267)
T PRK11172 138 QAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGKVLK----------------------------- 188 (267)
T ss_pred HHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCcccC-----------------------------
Confidence 99887654 678999999999988899999999999999999999852210
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHhhhCCCeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhcccc
Q 042524 258 MLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEP 324 (365)
Q Consensus 258 ~~~~~~l~~la~~~~~s~~qlAl~w~l~~~~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~ 324 (365)
.+.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++||++++++|+++.+
T Consensus 189 ---~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~ 252 (267)
T PRK11172 189 ---DPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252 (267)
T ss_pred ---CHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhcc
Confidence 1568999999999999999999999998999999999999999999999999999999999975
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=9e-57 Score=425.52 Aligned_cols=284 Identities=23% Similarity=0.402 Sum_probs=232.8
Q ss_pred eEEc-CCCCccCcceeeccc-C----ChhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCcEEE
Q 042524 12 YFVL-NTGAKIPAIGLGTWQ-T----GGELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKREDVFL 82 (365)
Q Consensus 12 ~~~l-~tg~~vs~lglG~~~-~----~~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~v~I 82 (365)
||+| +||++||+||||||+ + +.+++.++|++|+++|||+||||+.||. |+++|+||++. +.+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CCCcccEEE
Confidence 5789 999999999999996 2 3578999999999999999999999983 99999999864 446999999
Q ss_pred EeecCCC-------CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHH
Q 042524 83 TSTLYCS-------MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAM 155 (365)
Q Consensus 83 ~tK~~~~-------~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 155 (365)
+||++.. ..+++.+++++++||+|||+||||+|++|||+. ..| ++++|++|
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~---------~~~-------------~~e~~~aL 135 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDP---------NTP-------------MEETVRAM 135 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCC---------CCC-------------HHHHHHHH
Confidence 9998532 247899999999999999999999999999986 123 78999999
Q ss_pred HHhHHcCCccEEEecCCCHHHHHHHHHHcC----CCCcccccccCccCch---hHHHHHHHHcCcEEEEecCCCCCCCCC
Q 042524 156 EGLVDSGLVRAIGVSNFGVSQIKELLKFAK----IMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSAHTPLGVPTSSP 228 (365)
Q Consensus 156 ~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via~spla~G~l~~ 228 (365)
++|+++||||+||+|||+.+++.++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |+++
T Consensus 136 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Lt 214 (317)
T TIGR01293 136 TYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVS 214 (317)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccC
Confidence 999999999999999999999888765432 5678999999999875 3699999999999999999998 7888
Q ss_pred CCCCCCCCCCCCCCCCc-cccccccCC----CCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHH
Q 042524 229 GTSDSGSGGEDETGTPR-ISFRRSRSV----HGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIR 301 (365)
Q Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~ 301 (365)
+++....+ .+.+.... ......... ......++.+.++|+++|+|++|+||+|+++++ +++|+|+++++||+
T Consensus 215 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~ 293 (317)
T TIGR01293 215 GKYDSGIP-PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLM 293 (317)
T ss_pred CCCCCCCC-CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHH
Confidence 87654321 11111000 000000000 011233467999999999999999999999996 57999999999999
Q ss_pred HhhcccCC--cCCHHHHHHHhcc
Q 042524 302 KNIDIFSW--SLSDDEWNRLNQI 322 (365)
Q Consensus 302 enl~a~~~--~Lt~e~~~~l~~~ 322 (365)
+|++++++ +||++++++|+++
T Consensus 294 en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 294 ENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHhhccCCCCHHHHHHHHhh
Confidence 99999987 9999999999975
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.8e-56 Score=425.68 Aligned_cols=297 Identities=22% Similarity=0.348 Sum_probs=239.5
Q ss_pred CCCCCCCCceEEc-CCCCccCcceeeccc-CC----hhHHHHHHHHHHHcCCCEEeCCCCcCC-----HHHHHHHHHHHh
Q 042524 3 GRFASPGSSYFVL-NTGAKIPAIGLGTWQ-TG----GELCVEAVKTALSVGYRNIDCAHLYGN-----EIEVGEALDEAF 71 (365)
Q Consensus 3 ~~~~~~~m~~~~l-~tg~~vs~lglG~~~-~~----~~~~~~~l~~a~~~Gin~~DTA~~Yg~-----E~~lG~al~~~~ 71 (365)
+......|+|++| +||++||+||||||+ ++ .+++.++|++|++.|||+||||+.||+ |+.+|++|++..
T Consensus 6 ~~~~~~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 6 NPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred cCCCCCCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 3344567999999 999999999999996 43 456789999999999999999999982 999999998531
Q ss_pred cCCCCCCcEEEEeecCCC--------CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHH
Q 042524 72 KGSLKREDVFLTSTLYCS--------MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQ 143 (365)
Q Consensus 72 ~~~~~R~~v~I~tK~~~~--------~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 143 (365)
+..|+++||+||++.. ..+++.+++++++||+|||+||||+|++|||+. ..|
T Consensus 86 --~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~---------~~~--------- 145 (346)
T PRK09912 86 --AAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDE---------NTP--------- 145 (346)
T ss_pred --cCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCC---------CCC---------
Confidence 1259999999998531 246889999999999999999999999999976 133
Q ss_pred hhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHH---cCCCCcccccccCccCch---hHHHHHHHHcCcEEEE
Q 042524 144 FLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKF---AKIMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSA 217 (365)
Q Consensus 144 ~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~---~~~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via 217 (365)
++++|++|++|+++||||+||||||++++++++.+. ..++++++|++||++++. .+++++|+++||++++
T Consensus 146 ----~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via 221 (346)
T PRK09912 146 ----MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIA 221 (346)
T ss_pred ----HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEE
Confidence 789999999999999999999999999988866553 345678999999999874 4699999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCc--cccccccC-CCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEec
Q 042524 218 HTPLGVPTSSPGTSDSGSGGEDETGTPR--ISFRRSRS-VHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLP 292 (365)
Q Consensus 218 ~spla~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~ 292 (365)
|+||++ |+|++++....+......... ...+..+. ....+...+.+.++|+++|+|++|+||+|++++| +++|+
T Consensus 222 ~spl~~-G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~ 300 (346)
T PRK09912 222 FTPLAQ-GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLI 300 (346)
T ss_pred ehhhcC-ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEe
Confidence 999998 677777643221111000000 00000010 1111233478999999999999999999999998 68999
Q ss_pred CCCCHHHHHHhhcccC-CcCCHHHHHHHhcccc
Q 042524 293 CSLKPDRIRKNIDIFS-WSLSDDEWNRLNQIEP 324 (365)
Q Consensus 293 g~~~~~ql~enl~a~~-~~Lt~e~~~~l~~~~~ 324 (365)
|+++++||++|++++. ++|+++++++|+++.+
T Consensus 301 G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~ 333 (346)
T PRK09912 301 GASRAEQLEENVQALNNLTFSTEELAQIDQHIA 333 (346)
T ss_pred CCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhC
Confidence 9999999999999984 8999999999999875
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.4e-56 Score=426.52 Aligned_cols=304 Identities=22% Similarity=0.284 Sum_probs=237.0
Q ss_pred CceEEc-CCCCccCcceeecccCC----hhHHHHHHHHHHHcCCCEEeCCCCcC----------CHHHHHHHHHHHhcCC
Q 042524 10 SSYFVL-NTGAKIPAIGLGTWQTG----GELCVEAVKTALSVGYRNIDCAHLYG----------NEIEVGEALDEAFKGS 74 (365)
Q Consensus 10 m~~~~l-~tg~~vs~lglG~~~~~----~~~~~~~l~~a~~~Gin~~DTA~~Yg----------~E~~lG~al~~~~~~~ 74 (365)
|+|++| +||++||+||||||+++ .+++.++|++|+++|||+||||+.|| +|..+|+||++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---- 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---- 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc----
Confidence 889999 99999999999999885 57889999999999999999999997 399999999863
Q ss_pred CCCCcEEEEeecCCC------------CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhH
Q 042524 75 LKREDVFLTSTLYCS------------MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERR 142 (365)
Q Consensus 75 ~~R~~v~I~tK~~~~------------~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 142 (365)
..|++++|+||++.. ..+++.+++++++||+|||+||||||++|||+......+...... ...
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~-----~~~ 151 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSW-----TDS 151 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccccc-----ccc
Confidence 259999999998531 257899999999999999999999999999975110000000000 000
Q ss_pred HhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHc---C-CCCcccccccCccCch--hHHHHHHHHcCcEEE
Q 042524 143 QFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFA---K-IMPAVNQVELHPFWRQ--DELVKFCQSKGIHVS 216 (365)
Q Consensus 143 ~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~---~-~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~vi 216 (365)
.....++++|++|++|+++||||+||+|||+.+++.+++..+ . ..+.++|++||+++++ .+++++|+++||+++
T Consensus 152 ~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~vi 231 (346)
T PRK10625 152 APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL 231 (346)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEE
Confidence 000127899999999999999999999999999988876543 2 2467899999999876 579999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCC
Q 042524 217 AHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCS 294 (365)
Q Consensus 217 a~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~ 294 (365)
+|+||++ |++++++.....+.+.+... ...+........+...+.++++|+++|+|++|+||+|++++| +++|+|+
T Consensus 232 a~spL~~-G~Ltg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~ 309 (346)
T PRK10625 232 AYSCLAF-GTLTGKYLNGAKPAGARNTL-FSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGA 309 (346)
T ss_pred EeccccC-eeccCCCCCCCCCCCccccc-ccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCC
Confidence 9999998 67777664322111111000 000000000112223578999999999999999999999998 4689999
Q ss_pred CCHHHHHHhhcccCCcCCHHHHHHHhcccc
Q 042524 295 LKPDRIRKNIDIFSWSLSDDEWNRLNQIEP 324 (365)
Q Consensus 295 ~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~ 324 (365)
++++||++|+++++++|+++++++|+++.+
T Consensus 310 ~~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 310 TTMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999865
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.2e-55 Score=409.42 Aligned_cols=259 Identities=37% Similarity=0.715 Sum_probs=233.3
Q ss_pred ceEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 042524 11 SYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSM 90 (365)
Q Consensus 11 ~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~ 90 (365)
++..|++|+.||+||||||+++.+++.++|++|++.|+|+||||+.||+|+.+|+||++. +++|++++|+||++..
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~~R~~~~i~tK~~~~- 80 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SVAREELFITTKLWND- 80 (275)
T ss_pred ceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CCCHHHEEEEEEecCc-
Confidence 456679999999999999999888999999999999999999999999999999999875 5579999999999743
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
+++.+++++++||+|||+||||+|++|||+... .+ ..++|++|++|+++||||+||+|
T Consensus 81 -~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~--------~~-------------~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 81 -DHKRPREALEESLKKLQLDYVDLYLMHWPVPAI--------DH-------------YVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred -chHHHHHHHHHHHHHhCCCceEEEEecCCCCCc--------Cc-------------HHHHHHHHHHHHHcCCeeEEeec
Confidence 678999999999999999999999999997610 11 67899999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRR 250 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (365)
||+++++++++..+.++|.++|++|+++.++.+++++|+++||++++|+||++|+ . .
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~-~--------------~-------- 195 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGG-K--------------G-------- 195 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCC-c--------------c--------
Confidence 9999999999987777889999999999888899999999999999999999742 0 0
Q ss_pred ccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCCCeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhccccc
Q 042524 251 SRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEPQ 325 (365)
Q Consensus 251 ~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~~ 325 (365)
....+.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++|+++++++|+++...
T Consensus 196 -------~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 196 -------VFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred -------cccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 00126799999999999999999999999988999999999999999999999999999999999753
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.6e-53 Score=402.98 Aligned_cols=275 Identities=19% Similarity=0.265 Sum_probs=227.2
Q ss_pred eEEc-CCCCccCcceeecccCC-------hhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCcE
Q 042524 12 YFVL-NTGAKIPAIGLGTWQTG-------GELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKREDV 80 (365)
Q Consensus 12 ~~~l-~tg~~vs~lglG~~~~~-------~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~v 80 (365)
||+| +||++||.||||||+++ .+++.++|++|++.|||+||||+.||. |..+|++|++. +.+|+++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~~R~~v 77 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GIPREKY 77 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CCCcceE
Confidence 6889 99999999999998754 567899999999999999999999986 99999999875 4579999
Q ss_pred EEEeecCCC----CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHH
Q 042524 81 FLTSTLYCS----MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAME 156 (365)
Q Consensus 81 ~I~tK~~~~----~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 156 (365)
||+||++.. ..+++.+++++++||+|||+||||+|+||||+... + ...++++|++|+
T Consensus 78 ~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~---------~----------~~~~~~~~~~l~ 138 (314)
T PLN02587 78 VVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS---------L----------DQIVNETIPALQ 138 (314)
T ss_pred EEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc---------h----------hhhHHHHHHHHH
Confidence 999999742 45789999999999999999999999999997510 0 012678999999
Q ss_pred HhHHcCCccEEEecCCCHHHHHHHHHHcC---CCCcccccccCccCch-hHHHHHHHHcCcEEEEecCCCCCCCCCCCCC
Q 042524 157 GLVDSGLVRAIGVSNFGVSQIKELLKFAK---IMPAVNQVELHPFWRQ-DELVKFCQSKGIHVSAHTPLGVPTSSPGTSD 232 (365)
Q Consensus 157 ~L~~~Gkir~iGvS~~~~~~l~~~~~~~~---~~~~~~q~~~n~~~~~-~~ll~~~~~~gi~via~spla~G~l~~~~~~ 232 (365)
+|+++||||+||+|||++++++.+..... +.+.++|+.||++++. .+++++|+++||++++|+||++ |+++++..
T Consensus 139 ~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~ 217 (314)
T PLN02587 139 KLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGP 217 (314)
T ss_pred HHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCC
Confidence 99999999999999999998887776432 2334568889887754 6899999999999999999998 56665431
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhcccC--
Q 042524 233 SGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIFS-- 308 (365)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~~-- 308 (365)
.. .. + .........+.+.++|+++++|++|+||+|++++| +++|+|+++++||++|+++..
T Consensus 218 ~~----~~---~--------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~ 282 (314)
T PLN02587 218 PE----WH---P--------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATEL 282 (314)
T ss_pred CC----CC---C--------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhc
Confidence 10 00 0 00011123456788999999999999999999998 578999999999999999976
Q ss_pred --CcCCHHHHHHHhcccc
Q 042524 309 --WSLSDDEWNRLNQIEP 324 (365)
Q Consensus 309 --~~Lt~e~~~~l~~~~~ 324 (365)
.+|+++++++|+++..
T Consensus 283 ~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 283 ETSGIDEELLSEVEAILA 300 (314)
T ss_pred ccCCCCHHHHHHHHHhhc
Confidence 3799999999998875
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.2e-52 Score=390.27 Aligned_cols=267 Identities=42% Similarity=0.661 Sum_probs=232.3
Q ss_pred eEEc-CCCCccCcceeecccCCh-----hHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHhcCCCCCCcEEE
Q 042524 12 YFVL-NTGAKIPAIGLGTWQTGG-----ELCVEAVKTALSVGYRNIDCAHLYG---NEIEVGEALDEAFKGSLKREDVFL 82 (365)
Q Consensus 12 ~~~l-~tg~~vs~lglG~~~~~~-----~~~~~~l~~a~~~Gin~~DTA~~Yg---~E~~lG~al~~~~~~~~~R~~v~I 82 (365)
|++| +||++||+||||||.++. +++.+++++|++.|||+||||+.|| +|+.+|++|++. + .|++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~-~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G-PREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C-CcCcEEE
Confidence 5788 799999999999998763 7899999999999999999999999 499999999975 2 4999999
Q ss_pred EeecCCCC-----CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHH
Q 042524 83 TSTLYCSM-----NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEG 157 (365)
Q Consensus 83 ~tK~~~~~-----~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 157 (365)
+||++... .+++.+++++++||++||+||||+|+||||+.... ...++|++|++
T Consensus 77 ~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~---------------------~~~~~~~~l~~ 135 (285)
T cd06660 77 ATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP---------------------DIEETLRALEE 135 (285)
T ss_pred EeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC---------------------CHHHHHHHHHH
Confidence 99998764 58999999999999999999999999999987110 17899999999
Q ss_pred hHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCchh--HHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCC
Q 042524 158 LVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQD--ELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGS 235 (365)
Q Consensus 158 L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~--~ll~~~~~~gi~via~spla~G~l~~~~~~~~~ 235 (365)
+|++||||+||+|+|+.+.+.+++..+..+|+++|++||++++.. +++++|+++||++++|+||++| .+.+......
T Consensus 136 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g-~l~~~~~~~~ 214 (285)
T cd06660 136 LVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGG-LLTGKYLPGA 214 (285)
T ss_pred HHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCc-eecCCCCCCC
Confidence 999999999999999999999999887778899999999999885 4999999999999999999984 4433222110
Q ss_pred CCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhcccCCcCCH
Q 042524 236 GGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIFSWSLSD 313 (365)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~~~~Lt~ 313 (365)
.. ........+..++++++++++|+|++|++++| +++|+|+++++||++|+++..++|++
T Consensus 215 ~~------------------~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~ 276 (285)
T cd06660 215 PP------------------PEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSD 276 (285)
T ss_pred CC------------------ChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCH
Confidence 00 00013467899999999999999999999996 78999999999999999999999999
Q ss_pred HHHHHHhcc
Q 042524 314 DEWNRLNQI 322 (365)
Q Consensus 314 e~~~~l~~~ 322 (365)
++++.|+++
T Consensus 277 ~~~~~l~~~ 285 (285)
T cd06660 277 EDLAALDAL 285 (285)
T ss_pred HHHHHHhhC
Confidence 999999863
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-52 Score=388.65 Aligned_cols=265 Identities=32% Similarity=0.565 Sum_probs=217.3
Q ss_pred cceeecccCC-----hhHHHHHHHHHHHcCCCEEeCCCCcC--C-HHHHHHHHHHHhcCCCCCCcEEEEeec-----CCC
Q 042524 23 AIGLGTWQTG-----GELCVEAVKTALSVGYRNIDCAHLYG--N-EIEVGEALDEAFKGSLKREDVFLTSTL-----YCS 89 (365)
Q Consensus 23 ~lglG~~~~~-----~~~~~~~l~~a~~~Gin~~DTA~~Yg--~-E~~lG~al~~~~~~~~~R~~v~I~tK~-----~~~ 89 (365)
+||||||+++ .+++.++|+.|++.|||+||||+.|| . |+.+|++|++. ..+|++++|+||+ +..
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~~r~~~~i~tK~~~~~~~~~ 77 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RVPRDDIFISTKVYGDGKPEP 77 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SSTGGGSEEEEEEESSSSTGG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---ccccccccccccccccccccc
Confidence 5899999764 68899999999999999999999994 3 99999999984 5689999999999 445
Q ss_pred CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEe
Q 042524 90 MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGV 169 (365)
Q Consensus 90 ~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGv 169 (365)
..+++.+++++++||++||+||||+|++|||+.... ...++|++|++|+++||||+|||
T Consensus 78 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~---------------------~~~~~~~~l~~l~~~G~ir~iGv 136 (283)
T PF00248_consen 78 DYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED---------------------ALEEVWEALEELKKEGKIRHIGV 136 (283)
T ss_dssp GSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS---------------------HHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccccccccccccchhcccccccccccc---------------------ccchhhhhhhhcccccccccccc
Confidence 678999999999999999999999999999987210 27899999999999999999999
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCccCc--hhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHPFWR--QDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRIS 247 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~--~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~ 247 (365)
|||+++.++++.....++|+++|++||++.+ ..+++++|+++||++++|+||++ |++++.+............
T Consensus 137 s~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~---- 211 (283)
T PF00248_consen 137 SNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASL---- 211 (283)
T ss_dssp ES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGS----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCccccccc----
Confidence 9999999999977777889999999999933 37899999999999999999998 5555554432221110000
Q ss_pred cccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhccc
Q 042524 248 FRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIE 323 (365)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~ 323 (365)
.........+.++++++|+|++|+||+|+++++ .++|+|+++++||++|+++++++||++++++|++++
T Consensus 212 -------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 212 -------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -------chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 002344589999999999999999999999875 799999999999999999999999999999999874
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-51 Score=381.66 Aligned_cols=254 Identities=27% Similarity=0.415 Sum_probs=218.2
Q ss_pred EEcCCCCccCcceeecccCC----------hhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCc
Q 042524 13 FVLNTGAKIPAIGLGTWQTG----------GELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKRED 79 (365)
Q Consensus 13 ~~l~tg~~vs~lglG~~~~~----------~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~ 79 (365)
+.|+ |++||+||||||+++ ++++.++|++|++.|||+||||+.||+ |+.+|++++. .|++
T Consensus 10 ~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------~R~~ 82 (290)
T PRK10376 10 FTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------YPDD 82 (290)
T ss_pred eecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------CCCe
Confidence 3446 999999999999864 367899999999999999999999997 8899999963 4999
Q ss_pred EEEEeecCC---------CCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHH
Q 042524 80 VFLTSTLYC---------SMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKK 150 (365)
Q Consensus 80 v~I~tK~~~---------~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (365)
+||+||++. ...+++.+++++++||+|||+||||+|++||++. . +.|.. ..+++
T Consensus 83 ~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~--~------h~p~~---------~~~~~ 145 (290)
T PRK10376 83 LTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGD--G------HGPAE---------GSIEE 145 (290)
T ss_pred EEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCC--C------CCCCC---------CCHHH
Confidence 999999853 2357899999999999999999999999998632 0 00100 11778
Q ss_pred HHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch-hHHHHHHHHcCcEEEEecCCCCCCCCCC
Q 042524 151 AWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ-DELVKFCQSKGIHVSAHTPLGVPTSSPG 229 (365)
Q Consensus 151 ~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~ll~~~~~~gi~via~spla~G~l~~~ 229 (365)
+|++|++|+++||||+||+|||+.++++++.+.+.+ +++|++||++.+. .+++++|+++||++++|+||+++ .
T Consensus 146 ~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~--~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~--~-- 219 (290)
T PRK10376 146 PLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAEI--VCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGF--T-- 219 (290)
T ss_pred HHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCCe--EEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCC--C--
Confidence 999999999999999999999999999999887654 8899999999876 67999999999999999999731 0
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhccc
Q 042524 230 TSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIF 307 (365)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~ 307 (365)
+ ...+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++.
T Consensus 220 --------------~--------------~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~ 271 (290)
T PRK10376 220 --------------P--------------LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAA 271 (290)
T ss_pred --------------h--------------hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhc
Confidence 0 01268899999999999999999999874 78899999999999999999
Q ss_pred CCcCCHHHHHHHhcccc
Q 042524 308 SWSLSDDEWNRLNQIEP 324 (365)
Q Consensus 308 ~~~Lt~e~~~~l~~~~~ 324 (365)
+++|++++++.|+++.+
T Consensus 272 ~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 272 ELVLSEEVLAELDGIAR 288 (290)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 99999999999998865
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.7e-51 Score=355.38 Aligned_cols=265 Identities=29% Similarity=0.376 Sum_probs=238.4
Q ss_pred CceEEc-CCCCccCcceeecccCC-----hhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCcE
Q 042524 10 SSYFVL-NTGAKIPAIGLGTWQTG-----GELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKREDV 80 (365)
Q Consensus 10 m~~~~l-~tg~~vs~lglG~~~~~-----~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~v 80 (365)
|++.+| +.|+.+|+|.+|+|++. ..++...++.|++.|||+||-|+.||+ |+++|++|+-. ...|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---PGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---hhhhhhe
Confidence 788999 89999999999999876 458889999999999999999999998 99999999865 4569999
Q ss_pred EEEeecCC------------CCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHH
Q 042524 81 FLTSTLYC------------SMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRL 148 (365)
Q Consensus 81 ~I~tK~~~------------~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (365)
.|.|||+. ++.+.++|..|+|+||++|+|||+|+++||+||+ . ++.
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp--L--------------------md~ 135 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP--L--------------------MDA 135 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc--c--------------------CCH
Confidence 99999973 3468999999999999999999999999999998 1 337
Q ss_pred HHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch---hHHHHHHHHcCcEEEEecCCCCCC
Q 042524 149 KKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSAHTPLGVPT 225 (365)
Q Consensus 149 ~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via~spla~G~ 225 (365)
+++-+||..|+++|||||+||||+++.+++.+.++...+.+.||++.|+++.. ++.+++|+++.|..++||||++|+
T Consensus 136 eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~ 215 (298)
T COG4989 136 EEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG 215 (298)
T ss_pred HHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc
Confidence 89999999999999999999999999999999988888889999999999876 679999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcC-CCHHHHHHHHhhhCC--CeEecCCCCHHHHHH
Q 042524 226 SSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHK-KTPEQVILRWGLQRG--TSVLPCSLKPDRIRK 302 (365)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~e 302 (365)
++.|. .. . .....++..+|+++| .|..++|++|++.+| ..+|+|+.+++++++
T Consensus 216 ~F~g~-~~---------~--------------q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~ 271 (298)
T COG4989 216 LFLGD-DK---------F--------------QRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRA 271 (298)
T ss_pred cccCC-cc---------h--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHH
Confidence 77651 10 0 011368999999999 799999999999999 578999999999999
Q ss_pred hhcccCCcCCHHHHHHHhccc
Q 042524 303 NIDIFSWSLSDDEWNRLNQIE 323 (365)
Q Consensus 303 nl~a~~~~Lt~e~~~~l~~~~ 323 (365)
.++|+++.||.++|-+|..+.
T Consensus 272 a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 272 AIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred HHHHhhccccHHHHHHHHHHh
Confidence 999999999999999998875
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.5e-50 Score=373.47 Aligned_cols=259 Identities=21% Similarity=0.272 Sum_probs=212.4
Q ss_pred CCccCcceeecccCC--------------hhHHHHHHHHHHHcCCCEEeCCCCcCC-HHHHHHHHHHHhcCCCCCCcEEE
Q 042524 18 GAKIPAIGLGTWQTG--------------GELCVEAVKTALSVGYRNIDCAHLYGN-EIEVGEALDEAFKGSLKREDVFL 82 (365)
Q Consensus 18 g~~vs~lglG~~~~~--------------~~~~~~~l~~a~~~Gin~~DTA~~Yg~-E~~lG~al~~~~~~~~~R~~v~I 82 (365)
+++||+||||||++| .+++.++|++|++.||||||||+.||. |..+|++|+.. .+++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-----~~~~~~i 76 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-----VPFRVTL 76 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-----CceEeec
Confidence 578999999998765 367899999999999999999999997 99999999741 3567899
Q ss_pred EeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcC
Q 042524 83 TSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSG 162 (365)
Q Consensus 83 ~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~G 162 (365)
+||.. ..+++.+++++++||+|||+||||+|++|||+... .| ..+++|++|++|+++|
T Consensus 77 ~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~--------~~------------~~~~~~~~l~~l~~~G 134 (292)
T PRK14863 77 STVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELF--------GP------------HGAALWERLQALKDQG 134 (292)
T ss_pred ccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc--------Cc------------chHHHHHHHHHHHHcC
Confidence 99853 34688999999999999999999999999986510 11 0257899999999999
Q ss_pred CccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch---hHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCC
Q 042524 163 LVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGED 239 (365)
Q Consensus 163 kir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~ 239 (365)
|||+||+|||+++++.++.. ..+|+++|++||+++++ .+++++|+++||++++|+||++|. |++.... .
T Consensus 135 kir~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~-L~~~~~~--~--- 206 (292)
T PRK14863 135 LFAKIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGL-LFLPPDR--V--- 206 (292)
T ss_pred CcceEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcc-ccCCccc--C---
Confidence 99999999999999887764 34679999999999986 359999999999999999999854 4321100 0
Q ss_pred CCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhcccCCcCCHHHHH
Q 042524 240 ETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIFSWSLSDDEWN 317 (365)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~ 317 (365)
+. ........+..+.+++.+.++|++|+||+|+++++ +++|+|+++++||++|+++.+.+++++.++
T Consensus 207 ----~~-------~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~ 275 (292)
T PRK14863 207 ----PA-------QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWD 275 (292)
T ss_pred ----cc-------chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchh
Confidence 00 00111233466778888899999999999999997 678999999999999999999999998887
Q ss_pred HHhcc
Q 042524 318 RLNQI 322 (365)
Q Consensus 318 ~l~~~ 322 (365)
+|.--
T Consensus 276 ~l~~~ 280 (292)
T PRK14863 276 DMAID 280 (292)
T ss_pred hccCC
Confidence 76644
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.3e-47 Score=351.01 Aligned_cols=284 Identities=25% Similarity=0.349 Sum_probs=238.7
Q ss_pred CceEEc-CCCCccCcceeecccCC--------hhHHHHHHHHHHHcCCCEEeCCCCc--CC-HHHHHHHHHHHhcCCCCC
Q 042524 10 SSYFVL-NTGAKIPAIGLGTWQTG--------GELCVEAVKTALSVGYRNIDCAHLY--GN-EIEVGEALDEAFKGSLKR 77 (365)
Q Consensus 10 m~~~~l-~tg~~vs~lglG~~~~~--------~~~~~~~l~~a~~~Gin~~DTA~~Y--g~-E~~lG~al~~~~~~~~~R 77 (365)
|.||++ +||.++|.||||||++. .+.+.++|++|+++|||+||||..| |. |..+|+||++. .|
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~-----~R 75 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG-----YR 75 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-----cc
Confidence 899999 99999999999999865 5678999999999999999999999 66 99999999975 69
Q ss_pred CcEEEEeecCCCC-CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHH
Q 042524 78 EDVFLTSTLYCSM-NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAME 156 (365)
Q Consensus 78 ~~v~I~tK~~~~~-~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 156 (365)
++|+++||+.... .+++.+++-++++|++||+||+|+|+||...... .+..+.+ ..++.++
T Consensus 76 ekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~-----------------~~k~~~~-g~~df~~ 137 (391)
T COG1453 76 EKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET-----------------WEKIERL-GVFDFLE 137 (391)
T ss_pred ceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH-----------------HHHHHcc-ChHHHHH
Confidence 9999999997432 5789999999999999999999999999876511 1111222 2699999
Q ss_pred HhHHcCCccEEEecCCCH-HHHHHHHHHcCCCCcccccccCccCch----hHHHHHHHHcCcEEEEecCCCCCCCCCCCC
Q 042524 157 GLVDSGLVRAIGVSNFGV-SQIKELLKFAKIMPAVNQVELHPFWRQ----DELVKFCQSKGIHVSAHTPLGVPTSSPGTS 231 (365)
Q Consensus 157 ~L~~~Gkir~iGvS~~~~-~~l~~~~~~~~~~~~~~q~~~n~~~~~----~~ll~~~~~~gi~via~spla~G~l~~~~~ 231 (365)
++|++||||++|+|.|+. +.+.+++.... ++++|+.||.++.. .+.+++|.++|++|+.++|+.+|+++.
T Consensus 138 kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~--- 212 (391)
T COG1453 138 KAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLY--- 212 (391)
T ss_pred HHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCccc---
Confidence 999999999999999975 67888887665 58999999998876 389999999999999999999976652
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcC--CCHHHHHHHHhhhCC--CeEecCCCCHHHHHHhhccc
Q 042524 232 DSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHK--KTPEQVILRWGLQRG--TSVLPCSLKPDRIRKNIDIF 307 (365)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~qlAl~w~l~~~--~~vi~g~~~~~ql~enl~a~ 307 (365)
..| +++.++++++. .||+.+|+||+++++ +++++|+++++||+||++.+
T Consensus 213 ----------~vP-----------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~ 265 (391)
T COG1453 213 ----------NVP-----------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIA 265 (391)
T ss_pred ----------CCC-----------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHH
Confidence 111 78899999885 789999999999998 68999999999999999988
Q ss_pred CC--c-CCHHHHHHHhccccc----------------ccccCCCCCcccCCCCCCcccCC
Q 042524 308 SW--S-LSDDEWNRLNQIEPQ----------------VCLFGNEPLNKLSASDSGFTFGS 348 (365)
Q Consensus 308 ~~--~-Lt~e~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 348 (365)
+. | ||+++++.|.++.+. .||.|-+...++.+++.-+.|++
T Consensus 266 ~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~C~yC~PCP~gInIP~~f~lyN~~~~~~~ 325 (391)
T COG1453 266 SELEPSLTEEELQILEKVEEIYRESLKVPCTGCRYCLPCPSGINIPEIFRLYNLAVAFDD 325 (391)
T ss_pred hhcCCccCHHHHHHHHHHHHHHHHHhcCCCccccccCcCCCCCChHHHHHHHHHHHhhcc
Confidence 73 4 999999998887543 56666666666666665555553
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.5e-46 Score=327.51 Aligned_cols=279 Identities=21% Similarity=0.227 Sum_probs=227.1
Q ss_pred CCCCCCceEEc-CCCCccCcceeecccCC-------hhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcC
Q 042524 5 FASPGSSYFVL-NTGAKIPAIGLGTWQTG-------GELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKG 73 (365)
Q Consensus 5 ~~~~~m~~~~l-~tg~~vs~lglG~~~~~-------~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~ 73 (365)
..+..|+||.+ +||++||+||||+..++ .++....+..|+++|||+||||+.||. |..+|.++++
T Consensus 17 ~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~---- 92 (342)
T KOG1576|consen 17 EKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD---- 92 (342)
T ss_pred HHHHHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh----
Confidence 35678999999 99999999999997654 456667777799999999999999998 9999999996
Q ss_pred CCCCCcEEEEeecCC--------CCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhh
Q 042524 74 SLKREDVFLTSTLYC--------SMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFL 145 (365)
Q Consensus 74 ~~~R~~v~I~tK~~~--------~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (365)
+||+.+||+||++. .+++++.+++++++||+||++||+|++++|..+. .|.. .
T Consensus 93 -vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvef----------ap~l--------d 153 (342)
T KOG1576|consen 93 -VPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEF----------APNL--------D 153 (342)
T ss_pred -CChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccc----------cccc--------c
Confidence 59999999999974 3578999999999999999999999999999887 2211 1
Q ss_pred HHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCC--cccccccCccCch-hHHHHHHHHcCcEEEEecCCC
Q 042524 146 NRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMP--AVNQVELHPFWRQ-DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 146 ~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~--~~~q~~~n~~~~~-~~ll~~~~~~gi~via~spla 222 (365)
..+.|++.+|++||++||||+|||+.++.+.+.++++...-.. +...++|++.+.. -..+++.+..|++||..++++
T Consensus 154 ~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asals 233 (342)
T KOG1576|consen 154 IVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALS 233 (342)
T ss_pred HHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHH
Confidence 2378999999999999999999999999999999987654333 3445777776554 567888889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCC--CeEecCCCCHHHH
Q 042524 223 VPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRG--TSVLPCSLKPDRI 300 (365)
Q Consensus 223 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~--~~vi~g~~~~~ql 300 (365)
. ||++. ..++.|+.+.+ +..+...+..++|++.|+.++.+|+.|.++.+ .++++|+++.++|
T Consensus 234 m-gLLt~----~gp~~wHPaS~-----------Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l 297 (342)
T KOG1576|consen 234 M-GLLTN----QGPPPWHPASD-----------ELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLL 297 (342)
T ss_pred H-HHhhc----CCCCCCCCCCH-----------HHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHH
Confidence 9 56543 33344444433 22223356678899999999999999999986 7999999999999
Q ss_pred HHhhcccCCcCCH-HHHHHHhcc
Q 042524 301 RKNIDIFSWSLSD-DEWNRLNQI 322 (365)
Q Consensus 301 ~enl~a~~~~Lt~-e~~~~l~~~ 322 (365)
+.|+++....||. ++...+..+
T Consensus 298 ~~nLdan~~~ls~~~~Qevl~~~ 320 (342)
T KOG1576|consen 298 RINLDANFDRLSSKHEQEVLRIL 320 (342)
T ss_pred HHHHHhhhccccchhHHHHHHHH
Confidence 9999977678888 444433333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.41 E-value=9.1e-07 Score=77.66 Aligned_cols=78 Identities=32% Similarity=0.559 Sum_probs=69.6
Q ss_pred HhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccC-chhHHHHHHHHcCcEEEEecC
Q 042524 143 QFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFW-RQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 143 ~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~-~~~~ll~~~~~~gi~via~sp 220 (365)
.+.+.+.+.|+.||+++.+|||..||+|.+++.+++++.+.+.++|..+|++..-.. ...++..+|..++|.+..++=
T Consensus 150 ~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 150 QEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred hhHHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCC
Confidence 445668899999999999999999999999999999999999999999999976543 348999999999999998753
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.14 E-value=7.7 Score=33.82 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=74.7
Q ss_pred HHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHH
Q 042524 99 YVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIK 178 (365)
Q Consensus 99 ~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~ 178 (365)
.++..|....-+.+|.+.+..- .+.+...-..|+++.+-|+---|++.||..+..+
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqt------------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R 118 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQT------------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNR 118 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhH------------------------HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHH
Confidence 3455566666667777776531 1123444566788888899888999999998877
Q ss_pred HHHHHcCCCCcccccccCccCch-------hHHHHHHHHcCcEEEEecCCCC
Q 042524 179 ELLKFAKIMPAVNQVELHPFWRQ-------DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 179 ~~~~~~~~~~~~~q~~~n~~~~~-------~~ll~~~~~~gi~via~spla~ 223 (365)
.-+-..+-.|..-..+|+-++.. .+..++|++.|+.+.-..++..
T Consensus 119 ~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 119 LQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 77665555677778888766543 7899999999999999999986
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=81.02 E-value=16 Score=33.44 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHhHHcCCccEEEe-cCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCCC
Q 042524 155 MEGLVDSGLVRAIGV-SNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 155 l~~L~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spla 222 (365)
|.+-.++|+. -+|+ .......+.+++...+++++++-.+..+++.+ ..++..|+..|+..+++-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 3444445775 4553 34444567777777888888888888888766 678899999999888887665
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.50 E-value=9.1 Score=37.26 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhh--CCCcc
Q 042524 35 LCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNL--GVSYL 112 (365)
Q Consensus 35 ~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL--g~d~i 112 (365)
....++++|++.|++++|||.+......+.+.. .+..+.+..-+|. +|.-.---+....+.+ .+++|
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a--------~~Agit~v~~~G~---dPGi~nv~a~~a~~~~~~~i~si 148 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA--------KKAGITAVLGCGF---DPGITNVLAAYAAKELFDEIESI 148 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH--------HHcCeEEEcccCc---CcchHHHHHHHHHHHhhccccEE
Confidence 345899999999999999997765532222222 2344555555543 3322222223333333 48999
Q ss_pred cEEEeeCCCC
Q 042524 113 DLYLMHWPEC 122 (365)
Q Consensus 113 Dl~~lH~p~~ 122 (365)
|+|..+.|++
T Consensus 149 ~iy~g~~g~~ 158 (389)
T COG1748 149 DIYVGGLGEH 158 (389)
T ss_pred EEEEecCCCC
Confidence 9999999887
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.26 E-value=29 Score=32.06 Aligned_cols=68 Identities=12% Similarity=-0.107 Sum_probs=46.7
Q ss_pred HHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCCC
Q 042524 155 MEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 155 l~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spla 222 (365)
|.+.-++|+.-.-.........+.+++...++++.++-.+..+++.+ ..++..++..|+..+++-|-.
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~ 78 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEG 78 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 34444557753333344444566777777888888888888888766 568888888999888876644
No 23
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.19 E-value=29 Score=31.63 Aligned_cols=62 Identities=16% Similarity=0.010 Sum_probs=44.5
Q ss_pred HcCCccEEEe-cCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCCC
Q 042524 160 DSGLVRAIGV-SNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 160 ~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spla 222 (365)
++|+. .+|+ .+.....+.+++...+++++++-.+..+++.+ ..++..++..|+..+++-|-.
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 34664 3443 44444567777777888888888888887766 678888889999888876654
No 24
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=71.56 E-value=96 Score=29.59 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHcCCCEEeC--CCCcC-----C-HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHH
Q 042524 33 GELCVEAVKTALSVGYRNIDC--AHLYG-----N-EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSL 104 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DT--A~~Yg-----~-E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 104 (365)
.++..+.++.+.+.|++.|-. +..|. . ..-+=+++++. -.+++.|....... ++.+... +-+
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-----~g~~~~l~vDaN~~-~~~~~a~----~~~ 209 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-----VGPDVDLMVDANGR-WDLAEAI----RLA 209 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-----hCCCCEEEEECCCC-CCHHHHH----HHH
Confidence 456667778888999998864 33331 1 11111334432 13456666666433 3433322 233
Q ss_pred HhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHH
Q 042524 105 KNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKF 183 (365)
Q Consensus 105 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~ 183 (365)
++|. -.++.++..|-. .+-++.+..|++.-.+. ..|=|.++.+.+.++++.
T Consensus 210 ~~l~--~~~i~~iEqP~~--------------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~ 261 (357)
T cd03316 210 RALE--EYDLFWFEEPVP--------------------------PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA 261 (357)
T ss_pred HHhC--ccCCCeEcCCCC--------------------------ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh
Confidence 3332 234555665533 01256677777775554 445566788899998876
Q ss_pred cCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEec
Q 042524 184 AKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 184 ~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~s 219 (365)
... +++|+...-. .+-.++...|+++|+.++.++
T Consensus 262 ~~~--d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 262 GAV--DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CCC--CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 544 6777765443 233789999999999987765
No 25
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=69.43 E-value=90 Score=30.80 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-----cccEEEeeCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-----YLDLYLMHWPECSASGFGDA 130 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-----~iDl~~lH~p~~~~~~~~~~ 130 (365)
.||.+..|-+++++..+. .+.+-++|.|-+.. +-|-..++...++++.+ .+.++.+|.|.....
T Consensus 62 V~Gg~~~L~~~i~~~~~~-~~p~~I~v~~tC~~-----~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~----- 130 (428)
T cd01965 62 VFGGEDNLIEALKNLLSR-YKPDVIGVLTTCLT-----ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS----- 130 (428)
T ss_pred eECcHHHHHHHHHHHHHh-cCCCEEEEECCcch-----hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc-----
Confidence 477777777888765442 23455778877743 34444455555555432 366888888776110
Q ss_pred CCCCCCCChhhHHhhHHHHHHHHHHHHh-------HHcCCccEEEecCC---CHHHHHHHHHHcCCC
Q 042524 131 TDPPSKSGSERRQFLNRLKKAWKAMEGL-------VDSGLVRAIGVSNF---GVSQIKELLKFAKIM 187 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~al~~L-------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~ 187 (365)
. ..-.+.++++|-+. ++.++|--||-++. +.+.+.++++..+++
T Consensus 131 ---------~----~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~ 184 (428)
T cd01965 131 ---------H----ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLE 184 (428)
T ss_pred ---------H----HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCC
Confidence 0 01123333333321 34567888876654 467889998887764
No 26
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=68.94 E-value=56 Score=32.24 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=63.1
Q ss_pred cCcceeecccCC------------hhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 042524 21 IPAIGLGTWQTG------------GELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYC 88 (365)
Q Consensus 21 vs~lglG~~~~~------------~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~ 88 (365)
|.||++|...+. .+++.+++..+.+.|+.-|-.==.|| -
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg-----------------------------l 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG-----------------------------L 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-----------------------------C
Confidence 557888877665 24455566666666665443322332 1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCcccEEEeeC-CCCCCCCCCCC-CCCCCCCChhhHHhhHHHHHHH-HHHHHhHHcCCcc
Q 042524 89 SMNSINKIENYVRVSLKNLGVSYLDLYLMHW-PECSASGFGDA-TDPPSKSGSERRQFLNRLKKAW-KAMEGLVDSGLVR 165 (365)
Q Consensus 89 ~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~-p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~al~~L~~~Gkir 165 (365)
+..+.+.+.+.++..+ .|+.|+|.+|.+-. |.....+.... ...| ..+ ...+.+ .+.+.|.+.|. +
T Consensus 199 P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP---~~d------~~~~~~~~~~e~L~~~Gy-~ 267 (416)
T COG0635 199 PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALP---DED------EKADMYELVEELLEKAGY-R 267 (416)
T ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCc---ChH------HHHHHHHHHHHHHHHCCC-c
Confidence 2346667777777665 47799999999843 22210110000 0112 111 022333 34456677787 9
Q ss_pred EEEecCCCH
Q 042524 166 AIGVSNFGV 174 (365)
Q Consensus 166 ~iGvS~~~~ 174 (365)
.+|+|||..
T Consensus 268 ~yeisnfa~ 276 (416)
T COG0635 268 QYEISNFAK 276 (416)
T ss_pred EEeechhcC
Confidence 999999976
No 27
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=67.46 E-value=1.1e+02 Score=28.65 Aligned_cols=181 Identities=18% Similarity=0.130 Sum_probs=91.7
Q ss_pred Ec-CCCCccCcceeecccCC--------hhHHHHHHHHHHH-cCCCEEeCCCCcCC------HHHHHHHHHHHhcCCCCC
Q 042524 14 VL-NTGAKIPAIGLGTWQTG--------GELCVEAVKTALS-VGYRNIDCAHLYGN------EIEVGEALDEAFKGSLKR 77 (365)
Q Consensus 14 ~l-~tg~~vs~lglG~~~~~--------~~~~~~~l~~a~~-~Gin~~DTA~~Yg~------E~~lG~al~~~~~~~~~R 77 (365)
.| ..|.+| .|.||+|... .++..+.+...++ .|...||---.|+. -..+-++|+..-+ .+
T Consensus 62 ~lk~~G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~---~~ 137 (294)
T cd06543 62 ALRAAGGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK---EY 137 (294)
T ss_pred HHHHcCCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH---HC
Confidence 45 566666 4788887643 2333344444443 39999997555543 1455666665411 12
Q ss_pred CcEEEEeecC--CCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHH
Q 042524 78 EDVFLTSTLY--CSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAM 155 (365)
Q Consensus 78 ~~v~I~tK~~--~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 155 (365)
..+.|+-.+. +....+..+ .+-+..+.-|+ ++|.+-+--.|.... .+ ...+ -..+..+.
T Consensus 138 p~l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~-------~~-~~~m--------g~~a~~aa 198 (294)
T cd06543 138 PDLKISFTLPVLPTGLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSS-------AG-SQDM--------GAAAISAA 198 (294)
T ss_pred CCcEEEEecCCCCCCCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCC-------CC-cccH--------HHHHHHHH
Confidence 3455555543 322332221 34455556665 355555544443110 00 0001 23455555
Q ss_pred HHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccC--ccCch--hHHHHHHHHcCcEEEEecCCCC
Q 042524 156 EGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELH--PFWRQ--DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 156 ~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n--~~~~~--~~ll~~~~~~gi~via~spla~ 223 (365)
+.++.+=+--+=+ ++..+ +....++.|.+-+.... .+... ..+.++|+++||+.+.+-.+.+
T Consensus 199 ~~~~~ql~~~~~~---~s~~~---~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 199 ESLHDQLKDLYPK---LSDAE---LWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred HHHHHHHHHHccC---CCHHH---HHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 5555542211212 22222 22333455554444332 23332 6899999999999999988876
No 28
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=67.15 E-value=80 Score=31.53 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCcCCHHHHHHHHHHHhcCCCC-CCcEEEEeecCCCC--CChhHHHHHHHHHHH-hhCCCcccEEEeeCCCCCCCCCCCC
Q 042524 55 HLYGNEIEVGEALDEAFKGSLK-REDVFLTSTLYCSM--NSINKIENYVRVSLK-NLGVSYLDLYLMHWPECSASGFGDA 130 (365)
Q Consensus 55 ~~Yg~E~~lG~al~~~~~~~~~-R~~v~I~tK~~~~~--~~~~~i~~~le~SL~-rLg~d~iDl~~lH~p~~~~~~~~~~ 130 (365)
-.||.|+-|-++|++..+. .+ .+=++|.|-+...- -+.+.+.+.++.-++ +..--.+.++.+|.|+....
T Consensus 66 ~VfGG~~~L~~~I~~~~~~-~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs----- 139 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARR-YPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS----- 139 (454)
T ss_pred eEECcHHHHHHHHHHHHHh-cCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC-----
Confidence 4588877777888765432 22 34477888874321 122333333332221 11101378999998887210
Q ss_pred CCCCCCCChhhHHhhHHHHHHHHHHHH-hH----HcCCccEEEecC--CCHHHHHHHHHHcCCC
Q 042524 131 TDPPSKSGSERRQFLNRLKKAWKAMEG-LV----DSGLVRAIGVSN--FGVSQIKELLKFAKIM 187 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~al~~-L~----~~Gkir~iGvS~--~~~~~l~~~~~~~~~~ 187 (365)
.. .-.+.+++++-+ +. .+++|--||-.+ .+.+.++++++..++.
T Consensus 140 ---------~~----~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~ 190 (454)
T cd01973 140 ---------MV----TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVE 190 (454)
T ss_pred ---------HH----HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 00 112223333322 22 246788887433 2346788888777653
No 29
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=65.68 E-value=59 Score=30.81 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=37.4
Q ss_pred EEecCC---CHHHHHHHHHHcCCC-CcccccccCccCchhHHHHHHHHcCcEEEEecCCC
Q 042524 167 IGVSNF---GVSQIKELLKFAKIM-PAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 167 iGvS~~---~~~~l~~~~~~~~~~-~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla 222 (365)
|..|.. +++.++++++.+.-+ +.++-+.. .+-.++.+.|+++|..+++.+|..
T Consensus 129 Id~s~n~~kD~evleaale~~~g~~pLInSat~---en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 129 IGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE---DNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred EecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH---HHHHHHHHHHHHhCCeEEEEcHHH
Confidence 555533 788999999987633 44444332 123689999999999999987654
No 30
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.56 E-value=1.3e+02 Score=28.29 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC--HH--HHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN--EI--EVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG 108 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~--E~--~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg 108 (365)
.++..+.++.+.+.|++.|+.-- |. +. -.=+++++. .. ++-|.-++... ++.+. ...+-+.|++++
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~----~g--~~~l~vD~n~~-~~~~~-A~~~~~~l~~~~ 204 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREA----AP--DARLRVDANQG-WTPEE-AVELLRELAELG 204 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHh----CC--CCeEEEeCCCC-cCHHH-HHHHHHHHHhcC
Confidence 45566778888899999998742 32 21 111334432 22 56677777543 34433 233334555554
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCC
Q 042524 109 VSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIM 187 (365)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~ 187 (365)
+ .++--|-. + +-++.+.+|++...|. ..|=+-++.+.+.++++....
T Consensus 205 l-----~~iEeP~~-----------~---------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~- 252 (316)
T cd03319 205 V-----ELIEQPVP-----------A---------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY- 252 (316)
T ss_pred C-----CEEECCCC-----------C---------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC-
Confidence 3 44443322 0 1256677788776666 345566788888888886654
Q ss_pred CcccccccCccC---chhHHHHHHHHcCcEEEEecCCC
Q 042524 188 PAVNQVELHPFW---RQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 188 ~~~~q~~~n~~~---~~~~ll~~~~~~gi~via~spla 222 (365)
+++|+.....- .-.++..+|+++|+.++.++-+.
T Consensus 253 -d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 253 -DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred -CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 67777655432 22689999999999999875554
No 31
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=63.42 E-value=1.5e+02 Score=28.84 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhHHc-CCccEEEec---CCCHHHHHHHHHHcCC-CCcccccccCccCchhHHHHHHHHcCcEEEEecCCC
Q 042524 148 LKKAWKAMEGLVDS-GLVRAIGVS---NFGVSQIKELLKFAKI-MPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 148 ~~~~~~al~~L~~~-Gkir~iGvS---~~~~~~l~~~~~~~~~-~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla 222 (365)
.++..+..++..+. +.=--|+=| ..+++.++++++.+.- +|.++-..... .-.++.+.|+++|..+++++|..
T Consensus 173 ~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~D 250 (389)
T TIGR00381 173 PSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMD 250 (389)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCc
Confidence 34455555554332 232233333 5688999999998864 55554443321 33689999999999999999887
Q ss_pred C
Q 042524 223 V 223 (365)
Q Consensus 223 ~ 223 (365)
-
T Consensus 251 i 251 (389)
T TIGR00381 251 I 251 (389)
T ss_pred H
Confidence 4
No 32
>PRK13796 GTPase YqeH; Provisional
Probab=62.39 E-value=1.5e+02 Score=28.56 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHcC---CCEEeCCCCcCC-HHHHHHHHHHHhcCCCCCCcEEEEeecCCCC--CChhHHHHHHHHHHHh
Q 042524 33 GELCVEAVKTALSVG---YRNIDCAHLYGN-EIEVGEALDEAFKGSLKREDVFLTSTLYCSM--NSINKIENYVRVSLKN 106 (365)
Q Consensus 33 ~~~~~~~l~~a~~~G---in~~DTA~~Yg~-E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~--~~~~~i~~~le~SL~r 106 (365)
.++..++++..-+.- +-.+|..+.-+. ...+.+... .+.-++|.+|.--.. ...+.+.+.+..-.+.
T Consensus 56 ~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~-------~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 56 DDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG-------NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC-------CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh
Confidence 445566676666555 456776554443 222322221 356788999985422 2345566667777777
Q ss_pred hCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHH
Q 042524 107 LGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELL 181 (365)
Q Consensus 107 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~ 181 (365)
+|....|++.+..-.. . .++++++.+.+..+.+.+--+|.+|..-..+--.+
T Consensus 129 ~g~~~~~v~~vSAk~g----------~-------------gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 129 LGLRPVDVVLISAQKG----------H-------------GIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred cCCCcCcEEEEECCCC----------C-------------CHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 8865557877764332 0 17778888888777788999999999987654444
No 33
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=61.63 E-value=5.2 Score=38.26 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=35.2
Q ss_pred cCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCcc-Cc-hhHHHHHHHHcCcE
Q 042524 161 SGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF-WR-QDELVKFCQSKGIH 214 (365)
Q Consensus 161 ~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~-~~-~~~ll~~~~~~gi~ 214 (365)
-|+|||+||--++++++.++.....- -++.+....++ ++ +..+++.|++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 49999999999999999888765431 13333333332 22 25677777777764
No 34
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=60.18 E-value=1e+02 Score=31.31 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCC
Q 042524 57 YGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSK 136 (365)
Q Consensus 57 Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 136 (365)
+|.++.|-+++++..+ ..+.+-++|.|-+ .++-|-..++...++++.+.++++.++.|.....
T Consensus 67 ~G~~~~L~~aI~~~~~-~~~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~----------- 129 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDD-RFKPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK----------- 129 (511)
T ss_pred cchHHHHHHHHHHHHH-hcCCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccc-----------
Confidence 6766666677765533 1234456677766 3456666667777777765689999998876211
Q ss_pred CChhhHHhhHHHHHHHHHHHHh-------HHcCCccEEEecCC------CHHHHHHHHHHcCCCCccc------------
Q 042524 137 SGSERRQFLNRLKKAWKAMEGL-------VDSGLVRAIGVSNF------GVSQIKELLKFAKIMPAVN------------ 191 (365)
Q Consensus 137 ~~~~~~~~~~~~~~~~~al~~L-------~~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~~~~------------ 191 (365)
....+...+..+++.+..- .+.++|--||.++. +...++++++..++.+.++
T Consensus 130 ---~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~ 206 (511)
T TIGR01278 130 ---ENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR 206 (511)
T ss_pred ---hhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh
Confidence 0011112233333333211 23567888998763 4467888888776532211
Q ss_pred --ccccCccC-ch--hHHHHHHH-HcCcEEEEecCCC
Q 042524 192 --QVELHPFW-RQ--DELVKFCQ-SKGIHVSAHTPLG 222 (365)
Q Consensus 192 --q~~~n~~~-~~--~~ll~~~~-~~gi~via~spla 222 (365)
...+|+.. ++ ...-++.+ +.|+.++...|++
T Consensus 207 l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 207 LPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred cccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 11133321 11 22344443 4599888777776
No 35
>PRK08609 hypothetical protein; Provisional
Probab=59.43 E-value=2.2e+02 Score=29.41 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCcC-------C--HHHHHHH--HHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHH
Q 042524 35 LCVEAVKTALSVGYRNIDCAHLYG-------N--EIEVGEA--LDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVS 103 (365)
Q Consensus 35 ~~~~~l~~a~~~Gin~~DTA~~Yg-------~--E~~lG~a--l~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~S 103 (365)
...++++.|.+.|+..|=.++|+. . +.+...+ ++.. ......=++++..=+... ++......+..
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~~~i~Il~GiEv~i~---~~g~~d~~~~~ 425 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKYPEIDILSGIEMDIL---PDGSLDYDDEV 425 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhcCCCeEEEEEEEeec---CCcchhhcHHH
Confidence 356799999999999998888752 1 2221111 1111 001111133333333222 11222233335
Q ss_pred HHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC------CC--HH
Q 042524 104 LKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN------FG--VS 175 (365)
Q Consensus 104 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~------~~--~~ 175 (365)
|+. .||+ +.-+|++.. .+ .+++++.+.++.+.|.+--||=-. +. ..
T Consensus 426 L~~--~D~v-I~SvH~~~~----------~~-------------~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~ 479 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFS----------QS-------------EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDV 479 (570)
T ss_pred HHh--hCEE-EEEeecCCC----------CC-------------HHHHHHHHHHHhcCCCceEEECCCccccccCCCchH
Confidence 554 5666 777886532 11 455678888888888887776332 11 22
Q ss_pred HHHHHHHHcCCCCcccccccCccC--chhHHHHHHHHcCcEEE
Q 042524 176 QIKELLKFAKIMPAVNQVELHPFW--RQDELVKFCQSKGIHVS 216 (365)
Q Consensus 176 ~l~~~~~~~~~~~~~~q~~~n~~~--~~~~ll~~~~~~gi~vi 216 (365)
.++++++.+.-.-.++|++-+.+. ....++..|.+.|+.++
T Consensus 480 d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 480 NIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred HHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 333443332211245566655432 23789999999998643
No 36
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=59.40 E-value=46 Score=30.26 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC--HHHHHHHHHHHhcCCCCCCcEEEEeecCCCC------CChhHHHHHHHHHH
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN--EIEVGEALDEAFKGSLKREDVFLTSTLYCSM------NSINKIENYVRVSL 104 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~--E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~------~~~~~i~~~le~SL 104 (365)
+....+.++.+-+.|++.|..++.+-. +...-++++.. ....+.+.|-++..+ .++....+.+++-|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-----~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dL 157 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-----KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDL 157 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-----CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-----HHCCCEEeecccCCCchhcccCCHHHHHHHHHHHH
Confidence 445677899999999999999988876 55555677765 455688888888643 23567777777777
Q ss_pred HhhCCCcccEEEeeCC
Q 042524 105 KNLGVSYLDLYLMHWP 120 (365)
Q Consensus 105 ~rLg~d~iDl~~lH~p 120 (365)
+. | .|.+++-.-
T Consensus 158 eA-G---A~~ViiEar 169 (244)
T PF02679_consen 158 EA-G---ADKVIIEAR 169 (244)
T ss_dssp HH-T---ECEEEE--T
T ss_pred HC-C---CCEEEEeee
Confidence 76 5 577777654
No 37
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.18 E-value=1.7e+02 Score=28.83 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=59.4
Q ss_pred CcCCHHHHHHHHHHHhcCCCCC-CcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKR-EDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPP 134 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 134 (365)
.||.+.-|.+++++..+. .+. +-++|.|-+...- --+++..-+++.-++++ ++++.+|.|......
T Consensus 79 VfGg~~kL~~~I~~~~~~-~~p~~~I~V~tTC~~~i-IGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s-------- 145 (421)
T cd01976 79 VFGGDKKLAKAIDEAYEL-FPLNKGISVQSECPVGL-IGDDIEAVARKASKELG---IPVVPVRCEGFRGVS-------- 145 (421)
T ss_pred ecCCHHHHHHHHHHHHHh-CCCccEEEEECCChHHH-hccCHHHHHHHHHHhhC---CCEEEEeCCCccCCc--------
Confidence 478877777887765442 234 6688888874321 01122222222222333 688999988762100
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHh-----HHcCCccEEEecCC--CHHHHHHHHHHcCCC
Q 042524 135 SKSGSERRQFLNRLKKAWKAMEGL-----VDSGLVRAIGVSNF--GVSQIKELLKFAKIM 187 (365)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~al~~L-----~~~Gkir~iGvS~~--~~~~l~~~~~~~~~~ 187 (365)
... .+....+.+++.|... +..++|--||-.++ +.+.++++++..+++
T Consensus 146 --~~~---G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~ 200 (421)
T cd01976 146 --QSL---GHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLR 200 (421)
T ss_pred --ccH---HHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCe
Confidence 000 0111123334444322 12467888885554 346788888887753
No 38
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.99 E-value=1.9e+02 Score=28.67 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=59.6
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-----cccEEEeeCCCCCCCCCCC
Q 042524 55 HLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-----YLDLYLMHWPECSASGFGD 129 (365)
Q Consensus 55 ~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-----~iDl~~lH~p~~~~~~~~~ 129 (365)
-.||.++-|-+++++..+. .+.+=++|.|-+- ++-+-..++...+++.-. .+.++.++.|.....
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~-~~p~~I~v~ttC~-----~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs---- 134 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAV-YKPDMIAVSTTCM-----AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS---- 134 (435)
T ss_pred eEECcHHHHHHHHHHHHHh-cCCCEEEEeCCch-----HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccC----
Confidence 4578877777777765332 2355577887773 334444444444444322 378999998866110
Q ss_pred CCCCCCCCChhhHHhhHHHHHHHHHHHH-h-------HHcCCccEEE-ecC-CC-HHHHHHHHHHcCCCC
Q 042524 130 ATDPPSKSGSERRQFLNRLKKAWKAMEG-L-------VDSGLVRAIG-VSN-FG-VSQIKELLKFAKIMP 188 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-L-------~~~Gkir~iG-vS~-~~-~~~l~~~~~~~~~~~ 188 (365)
.. .-.+.++++|-+ + ++.++|--|| ..+ .+ .+.++++++..++.+
T Consensus 135 ----------~~----~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 135 ----------HI----TGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred ----------HH----HHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 00 112333444332 2 2234566665 222 22 578888888877644
No 39
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=57.37 E-value=1.1e+02 Score=27.90 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=38.5
Q ss_pred HhHHcCCccEEEe-cCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCC
Q 042524 157 GLVDSGLVRAIGV-SNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 157 ~L~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spl 221 (365)
+..++|+. -+|+ ...+...+.+.....++++.++-.+.++++.+ ..++..++..|+.++++-|-
T Consensus 5 ~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~ 71 (249)
T TIGR02311 5 QALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI 71 (249)
T ss_pred HHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC
Confidence 34445775 3443 23333444555555667777777777776544 45777777778877776543
No 40
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=56.75 E-value=1.6e+02 Score=26.94 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=62.6
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEe-eCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLM-HWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
+.+.+.+..++.+ +-|-|+||+=-. .+|.. .+ ... .+.++.+...+..+++.-.+- +.+-
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~----------~~----i~~---~~E~~rl~~~v~~i~~~~~~p-lSID 82 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGA----------DP----VSV---EEELERVIPVLEALRGELDVL-ISVD 82 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCC----------CC----CCH---HHHHHHHHHHHHHHHhcCCCc-EEEe
Confidence 4444444444443 558899998642 23433 00 000 112344445556666553443 8888
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEec
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~s 219 (365)
++.++.++++++.+. ..+|-+. ....+.++++.++++|..++.+.
T Consensus 83 T~~~~v~e~al~~G~--~iINdis--g~~~~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 83 TFRAEVARAALEAGA--DIINDVS--GGSDDPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred CCCHHHHHHHHHhCC--CEEEeCC--CCCCChHHHHHHHHcCCCEEEEC
Confidence 999999999998752 2333333 33223689999999999999953
No 41
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=56.49 E-value=68 Score=29.46 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
++.+ -+..+-+.|.++|+|+|++-+......... +-.... ..+.++.+..+.+ +..+..+++
T Consensus 17 f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~--~~~~~~--------------~~~~~~~i~~~~~-~~~~~~~~~ 78 (266)
T cd07944 17 FGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFK--GKSAFC--------------DDEFLRRLLGDSK-GNTKIAVMV 78 (266)
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccC--CCccCC--------------CHHHHHHHHhhhc-cCCEEEEEE
Confidence 4544 445566669999999999987654321000 000000 1345555555543 346666665
Q ss_pred CCC---HHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEe
Q 042524 171 NFG---VSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 171 ~~~---~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~ 218 (365)
... .+.+..+.. +.++..-+.+..+.+..-.+.+++++++|+.+...
T Consensus 79 ~~~~~~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 79 DYGNDDIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCCCCCHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 543 344544433 22322112223333333367899999999876654
No 42
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=56.37 E-value=1.2e+02 Score=27.75 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=58.6
Q ss_pred cceeecccCChhH-HHHHHHHHHHcCCCEEeCCCCcCC-----H--HHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChh
Q 042524 23 AIGLGTWQTGGEL-CVEAVKTALSVGYRNIDCAHLYGN-----E--IEVGEALDEAFKGSLKREDVFLTSTLYCSMNSIN 94 (365)
Q Consensus 23 ~lglG~~~~~~~~-~~~~l~~a~~~Gin~~DTA~~Yg~-----E--~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~ 94 (365)
++.+=+..+.+++ ...+.+.|++.|..|+=|+..|+. | +++-+.+++. + ...+ +--|....-.+.+
T Consensus 135 KVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~-~~~~--vgIKAsGGIrt~~ 208 (257)
T PRK05283 135 KVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G-VAKT--VGFKPAGGVRTAE 208 (257)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c-cCCC--eeEEccCCCCCHH
Confidence 4455555566564 778999999999999999999964 2 2333344321 1 0122 4556655455788
Q ss_pred HHHHHHHHHHHhhCCCccc
Q 042524 95 KIENYVRVSLKNLGVSYLD 113 (365)
Q Consensus 95 ~i~~~le~SL~rLg~d~iD 113 (365)
....-++.--+.||.++++
T Consensus 209 ~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 209 DAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHhChhhcC
Confidence 8999999999999998865
No 43
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=55.96 E-value=1.1e+02 Score=25.78 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCc-------hhHHHHHHHHcCcEEEEecC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWR-------QDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~-------~~~ll~~~~~~gi~via~sp 220 (365)
.+++++..-+=-+++-|++|=|++.+......+++...-...++-+.|+.-.. +.++-+..+++|..+..-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 56677766666677789999988887777777776654322333344433222 26899999999998887554
Q ss_pred CCC
Q 042524 221 LGV 223 (365)
Q Consensus 221 la~ 223 (365)
..+
T Consensus 92 alS 94 (186)
T COG1751 92 ALS 94 (186)
T ss_pred hhh
Confidence 433
No 44
>PRK08392 hypothetical protein; Provisional
Probab=55.30 E-value=1.5e+02 Score=26.13 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCcCC------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC
Q 042524 35 LCVEAVKTALSVGYRNIDCAHLYGN------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG 108 (365)
Q Consensus 35 ~~~~~l~~a~~~Gin~~DTA~~Yg~------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg 108 (365)
...+.++.|.+.|++.|=.+++... +..+.+.-+ . ... .+=++.+..=+...... ....+..+++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~-l-~~~-~~i~il~GiE~~~~~~~----~~~~~~~~~~-- 85 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQ-W-GEE-SEIVVLAGIEANITPNG----VDITDDFAKK-- 85 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHH-H-hhc-cCceEEEeEEeeecCCc----chhHHHHHhh--
Confidence 3568999999999999877666421 222222211 1 000 11122322333222111 2333344553
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC-------CC-HHHHHHH
Q 042524 109 VSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN-------FG-VSQIKEL 180 (365)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~-------~~-~~~l~~~ 180 (365)
.||+ +.-+|.... .+ ..++.++.+.++.+.|.+.-+|=-. +. .+.+.++
T Consensus 86 ~D~v-I~SvH~~~~----------~~------------~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i 142 (215)
T PRK08392 86 LDYV-IASVHEWFG----------RP------------EHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEI 142 (215)
T ss_pred CCEE-EEEeecCcC----------Cc------------HHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHH
Confidence 4666 667784221 11 1456778888888889877776311 11 1333444
Q ss_pred HHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEE
Q 042524 181 LKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 181 ~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via 217 (365)
++.+.-.-..+.++-..-.+..++++.|++.|+.++.
T Consensus 143 ~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 143 LDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred HHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 4333211122233221123446899999999976543
No 45
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.89 E-value=1e+02 Score=31.12 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhHHcCCccEEEecC----CCHHHHHHHHHHc---C-CCC-cccccccCccCchhHHHHHHHHcCcEEEE
Q 042524 147 RLKKAWKAMEGLVDSGLVRAIGVSN----FGVSQIKELLKFA---K-IMP-AVNQVELHPFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 147 ~~~~~~~al~~L~~~Gkir~iGvS~----~~~~~l~~~~~~~---~-~~~-~~~q~~~n~~~~~~~ll~~~~~~gi~via 217 (365)
+.+.+++.++.|+++..++.+-+++ .+...+.++++.. . .+. ...+...+.+.++.++++..++.|+..+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~ 302 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHIS 302 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEE
Confidence 4788999999998876688887664 2344444444321 1 211 12344444444467899999999987666
Q ss_pred ecCC
Q 042524 218 HTPL 221 (365)
Q Consensus 218 ~spl 221 (365)
.+.=
T Consensus 303 iGiE 306 (497)
T TIGR02026 303 LGTE 306 (497)
T ss_pred Eccc
Confidence 5333
No 46
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=54.44 E-value=65 Score=29.08 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcC-CccEEEec
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSG-LVRAIGVS 170 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~G-kir~iGvS 170 (365)
+.+... .+-..|.++|+++|.+-..-.+.. .| ..++.++.++.+++.+ .++...++
T Consensus 17 s~e~~~-~i~~~L~~~GV~~IEvg~~~~~~~----------~p------------~~~~~~~~i~~l~~~~~~~~~~~l~ 73 (265)
T cd03174 17 STEDKL-EIAEALDEAGVDSIEVGSGASPKA----------VP------------QMEDDWEVLRAIRKLVPNVKLQALV 73 (265)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEeccCcCccc----------cc------------cCCCHHHHHHHHHhccCCcEEEEEc
Confidence 444444 444557889999888887655432 01 0345678888888888 57776777
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCcc----------------CchhHHHHHHHHcCcEEEEec
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPF----------------WRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~----------------~~~~~ll~~~~~~gi~via~s 219 (365)
......++.+.+.. . +.+++.+..- ..-.+.+++++++|+.+...-
T Consensus 74 ~~~~~~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 74 RNREKGIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCchhhHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66566666666543 2 3444443322 111467889999999877654
No 47
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=54.39 E-value=91 Score=28.99 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=72.8
Q ss_pred HHHHHhHHcCCccEEEecCCCHHHHHHHHHHcC--C----CCcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCC
Q 042524 153 KAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAK--I----MPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTS 226 (365)
Q Consensus 153 ~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~--~----~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l 226 (365)
+.++.|....++-.+-=.+.+.+.+.++.+... + .+..+.+-+--..|+..+.+.+++-++-++.-+.-.+
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--- 221 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--- 221 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc---
Confidence 345555444555555555566666555554332 1 1122223233334567899999998887777322221
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCC------CHHHHHHHHhhhCC-CeEecCCCCHHH
Q 042524 227 SPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKK------TPEQVILRWGLQRG-TSVLPCSLKPDR 299 (365)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlAl~w~l~~~-~~vi~g~~~~~q 299 (365)
+ -.+|.++|++++. ++.++-..|.-... +.+..|+|+|+.
T Consensus 222 ----------------N-----------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~ 268 (280)
T TIGR00216 222 ----------------N-----------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDW 268 (280)
T ss_pred ----------------h-----------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHH
Confidence 1 1689999999873 68999999997665 678899999998
Q ss_pred HHHhh
Q 042524 300 IRKNI 304 (365)
Q Consensus 300 l~enl 304 (365)
+-+.+
T Consensus 269 li~eV 273 (280)
T TIGR00216 269 IIEEV 273 (280)
T ss_pred HHHHH
Confidence 75543
No 48
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.54 E-value=2e+02 Score=29.31 Aligned_cols=145 Identities=11% Similarity=0.139 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCC
Q 042524 57 YGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSK 136 (365)
Q Consensus 57 Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 136 (365)
+|.+..|-+++++..+ ..+.+-++|.|-+ .++-|-..++...++++.+ +.++.++.|.....
T Consensus 67 ~G~~ekL~~aI~~~~~-~~~P~~I~V~sTC-----~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~----------- 128 (519)
T PRK02910 67 RGTAELLKDTLRRADE-RFQPDLIVVGPSC-----TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVK----------- 128 (519)
T ss_pred CChHHHHHHHHHHHHH-hcCCCEEEEeCCc-----HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccc-----------
Confidence 4445566666665432 1234445777776 3455666666666666653 67999999876211
Q ss_pred CChhhHHhhHHHHHHHHHHHH--------hHHcCCccEEEecC------CCHHHHHHHHHHcCCCCccc-----------
Q 042524 137 SGSERRQFLNRLKKAWKAMEG--------LVDSGLVRAIGVSN------FGVSQIKELLKFAKIMPAVN----------- 191 (365)
Q Consensus 137 ~~~~~~~~~~~~~~~~~al~~--------L~~~Gkir~iGvS~------~~~~~l~~~~~~~~~~~~~~----------- 191 (365)
..+.+...+..+++.+.. -.+.++|--||.++ .+...++++++..++.+.++
T Consensus 129 ---~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~ 205 (519)
T PRK02910 129 ---ENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLK 205 (519)
T ss_pred ---cchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence 001111223333333322 12345688888754 23467888888776532211
Q ss_pred ---ccccCccCch---hHHHHHHH-HcCcEEEEecCCC
Q 042524 192 ---QVELHPFWRQ---DELVKFCQ-SKGIHVSAHTPLG 222 (365)
Q Consensus 192 ---q~~~n~~~~~---~~ll~~~~-~~gi~via~spla 222 (365)
...+|+.... ..+-++.+ +.|+.++...|++
T Consensus 206 ~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 206 RLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred hcccCcEEEEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 1123332111 22334443 4588887777776
No 49
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.97 E-value=94 Score=28.93 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=67.6
Q ss_pred CCccEEEecCCCHHHHHHHHHHcCCCC----cccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCC
Q 042524 162 GLVRAIGVSNFGVSQIKELLKFAKIMP----AVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGG 237 (365)
Q Consensus 162 Gkir~iGvS~~~~~~l~~~~~~~~~~~----~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~ 237 (365)
.++-.+-=.+.+.+.+.++.+...-++ ..+.+-+--..|+..+.+++++.++-++.-+.-.+
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-------------- 222 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-------------- 222 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc--------------
Confidence 444444444566666655554332111 12222222334567889999998888777332221
Q ss_pred CCCCCCCccccccccCCCCCCccchHHHHHHHHcCC------CHHHHHHHHhhhCC-CeEecCCCCHHHHHHhh
Q 042524 238 EDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKK------TPEQVILRWGLQRG-TSVLPCSLKPDRIRKNI 304 (365)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlAl~w~l~~~-~~vi~g~~~~~ql~enl 304 (365)
+ -.+|.++|++.+. ++.++-..|..... +.+..|+|+|+.+-+.+
T Consensus 223 -----N-----------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 223 -----N-----------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred -----c-----------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 1 1688999998874 67888889998766 67889999999875544
No 50
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=51.15 E-value=1.1e+02 Score=28.63 Aligned_cols=107 Identities=9% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCccEEEecCCCHHHHHHHHHHcCCCC-c-----ccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCC
Q 042524 162 GLVRAIGVSNFGVSQIKELLKFAKIMP-A-----VNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGS 235 (365)
Q Consensus 162 Gkir~iGvS~~~~~~l~~~~~~~~~~~-~-----~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~ 235 (365)
.++-.+-=.+.+.+.+.++.+...-++ . .+.+-+--..|+..+.+++++.++-++.-++-.+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss------------ 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS------------ 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc------------
Confidence 445555555566666665555432111 1 1112122234557889999998888777332221
Q ss_pred CCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCC------CHHHHHHHHhhhCC-CeEecCCCCHHHHHHhh
Q 042524 236 GGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKK------TPEQVILRWGLQRG-TSVLPCSLKPDRIRKNI 304 (365)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlAl~w~l~~~-~~vi~g~~~~~ql~enl 304 (365)
+ -.+|.++|++++. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 224 -------N-----------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 -------N-----------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -------c-----------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 1 1688999998873 68999999997665 67889999999775544
No 51
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=50.90 E-value=1.3e+02 Score=27.56 Aligned_cols=102 Identities=19% Similarity=0.116 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN 171 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~ 171 (365)
+.+.+.+...+. ..-|-|+||+=.=-.+. ...+.....++.+++.-.+ -+-+-+
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~~~~~------------------------eE~~r~~~~v~~l~~~~~~-plsIDT 76 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAGTAVE------------------------EEPETMEWLVETVQEVVDV-PLCIDS 76 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCch------------------------hHHHHHHHHHHHHHHhCCC-CEEEeC
Confidence 444555554443 36689999987421110 0133344444444443222 378889
Q ss_pred CCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecC
Q 042524 172 FGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~sp 220 (365)
++++.++++++.+.-.+.+|-+.... .+..++++.++++|..+++..-
T Consensus 77 ~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 77 PNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 99999999999854334455444321 2346899999999999998643
No 52
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=50.50 E-value=1.4e+02 Score=28.67 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccE
Q 042524 87 YCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRA 166 (365)
Q Consensus 87 ~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~ 166 (365)
+.+..+.+.+.+.++..+ +|+.++|.+|.+.--... .- ..... .+ .+ ..+-...+.+.|.+.|. ..
T Consensus 158 GlPgqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT-~l-~~~~~-~~---~~------~~~~~~~~~~~l~~~Gy-~~ 223 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAK-ELPINHLSAYSLTIEENT-PF-FEKNH-KK---KD------DENLAKFFIEQLEELGF-KQ 223 (350)
T ss_pred CCCCCCHHHHHHHHHHHH-hcCCCEEEeccceecCCC-hh-HHhhh-cC---CC------HHHHHHHHHHHHHHCCC-cE
Confidence 334457788888886644 599999999987642210 00 00000 00 00 01122345677888896 57
Q ss_pred EEecCCCH
Q 042524 167 IGVSNFGV 174 (365)
Q Consensus 167 iGvS~~~~ 174 (365)
+++|||..
T Consensus 224 yeis~fa~ 231 (350)
T PRK08446 224 YEISNFGK 231 (350)
T ss_pred EEeehhhC
Confidence 99999863
No 53
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=49.55 E-value=2.1e+02 Score=26.16 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEE-eeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHc-CCccEEE
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYL-MHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDS-GLVRAIG 168 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~-Gkir~iG 168 (365)
.+++.+.+.+++.+ .-|.++||+=- --+|+. ..... .+.++.+...++.+++. +. -+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~--------------~~i~~---~~E~~rl~~~v~~~~~~~~~--pls 79 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGA--------------DRVSP---EEELNRVVPVIKALRDQPDV--PIS 79 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCC--------------CCCCH---HHHHHHHHHHHHHHHhcCCC--eEE
Confidence 35556655555544 56899999921 112221 10111 01123355555666655 43 488
Q ss_pred ecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEec
Q 042524 169 VSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 169 vS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~s 219 (365)
+-+++++.++++++.. . ..+|-+.. .. ..++++.++++|..++.+.
T Consensus 80 iDT~~~~vi~~al~~G-~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 80 VDTYRAEVARAALEAG-A-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EeCCCHHHHHHHHHcC-C-CEEEECCC--CC-CchhHHHHHHcCCcEEEEe
Confidence 8899999999999873 2 23343332 22 4679999999999999953
No 54
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=47.01 E-value=1.2e+02 Score=26.95 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=53.1
Q ss_pred eeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCC-----HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHH
Q 042524 25 GLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGN-----EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENY 99 (365)
Q Consensus 25 glG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~-----E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~ 99 (365)
.+-+..+..++...+.+.+.+.|..|+=|+..|+. +.+ +.|++. -+++ +-.|......+.+...+-
T Consensus 123 IlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv--~~m~~~-----v~~~--v~IKaaGGirt~~~a~~~ 193 (211)
T TIGR00126 123 IIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV--RLMRNT-----VGDT--IGVKASGGVRTAEDAIAM 193 (211)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH--HHHHHH-----hccC--CeEEEeCCCCCHHHHHHH
Confidence 34444466677788999999999999999998863 211 223332 1222 344554434478888899
Q ss_pred HHHHHHhhCCCc
Q 042524 100 VRVSLKNLGVSY 111 (365)
Q Consensus 100 le~SL~rLg~d~ 111 (365)
++.--.|+|++.
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 999999999865
No 55
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.92 E-value=2.7e+02 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=27.9
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCC
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCA 54 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA 54 (365)
+|+.|.+... |+++.++..++++...+.||..|+.+
T Consensus 10 TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 10 TLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3466666543 45667888899999999999999994
No 56
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=46.85 E-value=1.1e+02 Score=27.21 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=47.6
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCccC---chhHHHHHHHHcCcEEEEecCCCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFW---RQDELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~---~~~~ll~~~~~~gi~via~spla~ 223 (365)
++.+.+|.+...+. ..+=|.++.+.+.+++..... +++|+..+..- .-.++..+|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 46677777777665 334555677777666665443 66777655432 226889999999999999877653
No 57
>PRK07534 methionine synthase I; Validated
Probab=46.72 E-value=2.7e+02 Score=26.62 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=88.8
Q ss_pred cccCC-hhHHHHHHHHHHHcCCCEEeCCCCcC-C---------H----HHHHHHHH---HHhcCCCCCCcEEEEeecCCC
Q 042524 28 TWQTG-GELCVEAVKTALSVGYRNIDCAHLYG-N---------E----IEVGEALD---EAFKGSLKREDVFLTSTLYCS 89 (365)
Q Consensus 28 ~~~~~-~~~~~~~l~~a~~~Gin~~DTA~~Yg-~---------E----~~lG~al~---~~~~~~~~R~~v~I~tK~~~~ 89 (365)
.|.+. ++...++=+..+++|-+.|=|.. |+ + + +++-.+.+ +.. .....+++|+-=+++.
T Consensus 38 lwsi~~Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~--~~~~~~~~VaGsIGP~ 114 (336)
T PRK07534 38 LWNEDHPDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVA--DKAGRKVIVAGSVGPT 114 (336)
T ss_pred HhcccCHHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH--HhcCCccEEEEecCCC
Confidence 35555 34455666677899999998654 53 2 1 11111211 110 1012357788888763
Q ss_pred C--------CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHc
Q 042524 90 M--------NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDS 161 (365)
Q Consensus 90 ~--------~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~ 161 (365)
. .+.+.+.+....-++.|--..+|++++-.... +.|+..+++.+++.
T Consensus 115 g~~l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~-------------------------l~E~~a~~~~~~~~ 169 (336)
T PRK07534 115 GEIMEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETISA-------------------------PEEIRAAAEAAKLA 169 (336)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc
Confidence 2 24456677777777777445699999986544 67777777777777
Q ss_pred CCccEEEecCC---------CHHHHHHHHHHcCCCCcccccccCc-cCch-hHHHHHHHHc-CcEEEEe
Q 042524 162 GLVRAIGVSNF---------GVSQIKELLKFAKIMPAVNQVELHP-FWRQ-DELVKFCQSK-GIHVSAH 218 (365)
Q Consensus 162 Gkir~iGvS~~---------~~~~l~~~~~~~~~~~~~~q~~~n~-~~~~-~~ll~~~~~~-gi~via~ 218 (365)
|+=-.+.++-. +.+.+.+++......++.+-+++.. ...- ..++...... ++.+++|
T Consensus 170 ~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vy 238 (336)
T PRK07534 170 GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAK 238 (336)
T ss_pred CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76544554432 2333444443332234666777663 2111 3334443333 4566655
No 58
>PRK06740 histidinol-phosphatase; Validated
Probab=46.28 E-value=2.3e+02 Score=27.03 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCC-ChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC-----
Q 042524 98 NYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKS-GSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN----- 171 (365)
Q Consensus 98 ~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~----- 171 (365)
..++..|+....||+ +.-+|..+. ... ..+... ...........+.-++.+.++.+.|++..||=-+
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g--~~~----~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f 228 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNG--WGF----DNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVF 228 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCC--cCC----CCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhc
Confidence 456667777778887 888898653 110 011000 0000011122345678888888999988877221
Q ss_pred -CCH------HHHHHHHHHcCCCCcccccccC--------ccCchhHHHHHHHHcCcEEEE
Q 042524 172 -FGV------SQIKELLKFAKIMPAVNQVELH--------PFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 172 -~~~------~~l~~~~~~~~~~~~~~q~~~n--------~~~~~~~ll~~~~~~gi~via 217 (365)
+.. ..++++++.+.-.-..+.++-+ -..+...++..|++.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 229 NYRLDENEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred CCCcchhhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 111 2333333322111122222222 122346789999999987644
No 59
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=45.96 E-value=2.3e+02 Score=25.72 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEe-eCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEe
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLM-HWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGV 169 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGv 169 (365)
.+.+.+.+..++.+ .-|-|+||+=-- -+|.. .+ ... .+..+.+...++.+++.-.+ -|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~----------~~---~~~----~~E~~rl~~~v~~l~~~~~~-piSI 81 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGA----------EP---VSV----EEELERVIPVLRALAGEPDV-PISV 81 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCC----------Cc---CCH----HHHHHHHHHHHHHHHhcCCC-eEEE
Confidence 35566666655554 668999998742 22322 01 001 01134455566666655233 3889
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecC
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~sp 220 (365)
-+++++.++++++.+ .+.+|-+. ....+.++++.++++|..++.+..
T Consensus 82 DT~~~~v~~aaL~~g--~~iINdis--~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 82 DTFNAEVAEAALKAG--ADIINDVS--GGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred eCCcHHHHHHHHHhC--CCEEEeCC--CCCCChHHHHHHHHcCCCEEEECc
Confidence 999999999999876 22333332 222226899999999999998754
No 60
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=45.63 E-value=71 Score=28.99 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHH-----------------HHHHHHhcCCCCCCcEEEEeecCCCCCCh
Q 042524 31 TGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVG-----------------EALDEAFKGSLKREDVFLTSTLYCSMNSI 93 (365)
Q Consensus 31 ~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG-----------------~al~~~~~~~~~R~~v~I~tK~~~~~~~~ 93 (365)
++.++-.++.++|-+.||.||=|.-.-..-..+- ..|+.. . -....++|+|=.. +.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A--~tgkPvIlSTG~s----tl 125 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-A--KTGKPVILSTGMS----TL 125 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-H--TT-S-EEEE-TT------H
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-H--HhCCcEEEECCCC----CH
Confidence 4467888999999999999997753321100110 011111 0 0234455555332 45
Q ss_pred hHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHH-HHHHHHHhHHcCCccEEEecCC
Q 042524 94 NKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKK-AWKAMEGLVDSGLVRAIGVSNF 172 (365)
Q Consensus 94 ~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~L~~~Gkir~iGvS~~ 172 (365)
+.|.++++-..++- .-++.++|+... +. +| .++ -+..+..|++.=- --||.|.|
T Consensus 126 ~EI~~Av~~~~~~~---~~~l~llHC~s~--YP------~~-------------~e~~NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 126 EEIERAVEVLREAG---NEDLVLLHCVSS--YP------TP-------------PEDVNLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp HHHHHHHHHHHHHC---T--EEEEEE-SS--SS---------------------GGG--TTHHHHHHHHST-SEEEEEE-
T ss_pred HHHHHHHHHHHhcC---CCCEEEEecCCC--CC------CC-------------hHHcChHHHHHHHHhcC-CCEEeCCC
Confidence 66666666553333 369999999866 21 12 221 2556666664422 57899999
Q ss_pred CHHHHH
Q 042524 173 GVSQIK 178 (365)
Q Consensus 173 ~~~~l~ 178 (365)
+.....
T Consensus 181 t~g~~~ 186 (241)
T PF03102_consen 181 TDGIEA 186 (241)
T ss_dssp SSSSHH
T ss_pred CCCcHH
Confidence 865433
No 61
>PRK05660 HemN family oxidoreductase; Provisional
Probab=45.60 E-value=2.7e+02 Score=26.93 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccE
Q 042524 87 YCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRA 166 (365)
Q Consensus 87 ~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~ 166 (365)
+.+..+.+.+.+.++..++ |+.|+|.+|.+--....... ......| ..+ ...+-.-.+.+.|.+.|. ..
T Consensus 167 Glpgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~-~~~~~~~---~~~-----~~~~~~~~~~~~L~~~Gy-~~ 235 (378)
T PRK05660 167 GLPDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFG-SRPPVLP---DDD-----ALWDIFEQGHQLLTAAGY-QQ 235 (378)
T ss_pred CCCCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCccc-ccCCCCc---CHH-----HHHHHHHHHHHHHHHcCC-cE
Confidence 4344577888888877554 99999999988532210010 0000011 000 001112234556777887 45
Q ss_pred EEecCCCH
Q 042524 167 IGVSNFGV 174 (365)
Q Consensus 167 iGvS~~~~ 174 (365)
+++|||..
T Consensus 236 yei~~fa~ 243 (378)
T PRK05660 236 YETSAYAK 243 (378)
T ss_pred eecccccC
Confidence 79998864
No 62
>PRK07094 biotin synthase; Provisional
Probab=45.56 E-value=1.8e+02 Score=27.25 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHcCCccEEEecC-----CCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEe
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSN-----FGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~-----~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~ 218 (365)
.+++++.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.+++.....+.+...++.|+..+..
T Consensus 72 ~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 72 PEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEe
Confidence 678888888888876 56676542 345666666654332111 2333444444578889999999877664
No 63
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.41 E-value=2.3e+02 Score=27.90 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=57.1
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-----cccEEEeeCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-----YLDLYLMHWPECSASGFGDA 130 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-----~iDl~~lH~p~~~~~~~~~~ 130 (365)
.||.++-|-+++++..++ .+.+-++|.|-+...- |-..++...+++.-+ .+.++.+|.|+....
T Consensus 62 VfGg~~~L~~~i~~~~~~-~~p~~I~V~ttc~~ei-----IGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~----- 130 (417)
T cd01966 62 ILGGGENLEEALDTLAER-AKPKVIGLLSTGLTET-----RGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGS----- 130 (417)
T ss_pred EECCHHHHHHHHHHHHHh-cCCCEEEEECCCcccc-----cccCHHHHHHHHHhhccccCCCeEEEecCCCCCCc-----
Confidence 478777777777665332 2456678888875432 222233333333211 467899998876210
Q ss_pred CCCCCCCChhhHHhhHHHHHHHHHHHH-h--------HHcCCccEEEecCC---CHHHHHHHHHHcCCC
Q 042524 131 TDPPSKSGSERRQFLNRLKKAWKAMEG-L--------VDSGLVRAIGVSNF---GVSQIKELLKFAKIM 187 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~al~~-L--------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~ 187 (365)
.... .+.+++++.+ + +..++|--||-++. +.+.++++++..++.
T Consensus 131 ---------~~~G----~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~ 186 (417)
T cd01966 131 ---------LEDG----WAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLE 186 (417)
T ss_pred ---------HHHH----HHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCc
Confidence 0111 3333333322 1 23567888875544 335677777766654
No 64
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=44.96 E-value=1.5e+02 Score=27.13 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCC-ccEEEe
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGL-VRAIGV 169 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gk-ir~iGv 169 (365)
++.+. +..+-+.|.++|++.|.+-. |.. .++.+++.+.+.+.++ .+-+++
T Consensus 19 ~s~~~-k~~i~~~L~~~Gv~~IEvG~---P~~-------------------------~~~~~~~~~~l~~~~~~~~v~~~ 69 (262)
T cd07948 19 FDTED-KIEIAKALDAFGVDYIELTS---PAA-------------------------SPQSRADCEAIAKLGLKAKILTH 69 (262)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEEC---CCC-------------------------CHHHHHHHHHHHhCCCCCcEEEE
Confidence 34444 34455559999998888874 543 2223444444444443 444556
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCc------cC--ch------hHHHHHHHHcCcEEEEec
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHP------FW--RQ------DELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~------~~--~~------~~ll~~~~~~gi~via~s 219 (365)
...+.+.++.+.+. +++..-+-++.|. +. ++ .+.+.+++++|+.+....
T Consensus 70 ~r~~~~di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 70 IRCHMDDARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred ecCCHHHHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66777888888774 3321111111111 11 11 456789999998776653
No 65
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=44.85 E-value=74 Score=30.61 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=50.3
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spl 221 (365)
++.+.+|++...+. ..|=|-++...+..++..... +++|+...-. ..-.++.+.|+++|+.++.++..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~--di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI--DYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 67778888887665 667777888888888876543 6777775442 23368999999999999876543
No 66
>PRK07945 hypothetical protein; Provisional
Probab=44.34 E-value=2.9e+02 Score=26.33 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcC-------C-HHHHHHHHHHH--hcCCCCCC-cEEEEeecCCCCCChhHHHHHHH
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYG-------N-EIEVGEALDEA--FKGSLKRE-DVFLTSTLYCSMNSINKIENYVR 101 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg-------~-E~~lG~al~~~--~~~~~~R~-~v~I~tK~~~~~~~~~~i~~~le 101 (365)
.....+++++|++.|+..+=.+++.. . ..-+-+.+.+. +.... ++ +|.+.--+.... ..-....+
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~---~g~~~~~~ 185 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD---DGSLDQEP 185 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC---CCCcchhH
Confidence 34567999999999999876666531 1 11111111110 00011 12 222222222111 11112223
Q ss_pred HHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC----------
Q 042524 102 VSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN---------- 171 (365)
Q Consensus 102 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~---------- 171 (365)
+.|+. .||+ +.-+|+... .+ .++..+.+.++.+.|++.-+|=-+
T Consensus 186 ~~l~~--~D~v-IgSvH~~~~----------~~-------------~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~ 239 (335)
T PRK07945 186 ELLDR--LDVV-VASVHSKLR----------MD-------------AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGT 239 (335)
T ss_pred HHHHh--CCEE-EEEeecCCC----------CC-------------HHHHHHHHHHHhcCCCCeEEecCchhhhccccCC
Confidence 33443 5666 777797532 01 234457778878888877777221
Q ss_pred -----CCHHHHHHHHHHcCCCCcccccccCcc--CchhHHHHHHHHcCcEE
Q 042524 172 -----FGVSQIKELLKFAKIMPAVNQVELHPF--WRQDELVKFCQSKGIHV 215 (365)
Q Consensus 172 -----~~~~~l~~~~~~~~~~~~~~q~~~n~~--~~~~~ll~~~~~~gi~v 215 (365)
+..+.+-+++...+. .+.++-+.+ .+...++..|++.|+.+
T Consensus 240 ~~~~~~~~~~i~~a~~e~g~---~lEINt~~~r~~P~~~il~~a~e~G~~v 287 (335)
T PRK07945 240 RPESKFDAEAVFAACREHGT---AVEINSRPERRDPPTRLLRLALDAGCLF 287 (335)
T ss_pred CChhhcCHHHHHHHHHHhCC---EEEEeCCCCCCCChHHHHHHHHHcCCeE
Confidence 122233333333332 233333222 24468999999999875
No 67
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=44.00 E-value=3.5e+02 Score=27.14 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=73.7
Q ss_pred CcCCHHHHHHHHHHHhcCCCCC-CcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-cccEEEeeCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKR-EDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-YLDLYLMHWPECSASGFGDATDP 133 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-~iDl~~lH~p~~~~~~~~~~~~~ 133 (365)
.||.|+-|-+++++..+. .+. +-++|.|-+.. +-|-..++...+++..+ -+.++.+|.|.....
T Consensus 112 VfGGe~kL~~aI~e~~~~-~~P~~~I~V~tTC~~-----~lIGDDi~av~~~~~~~~~~pVi~v~t~gf~G~-------- 177 (466)
T TIGR01282 112 VFGGDKKLKKAIDEIEEL-FPLNKGISIQSECPV-----GLIGDDIEAVAKKASKELGKPVVPVRCEGFRGV-------- 177 (466)
T ss_pred ecCcHHHHHHHHHHHHHh-CCcccEEEEeCCChH-----HHhccCHHHHHHHHhhhcCCcEEEEeCCCcCCc--------
Confidence 477777777777765442 233 56888888743 22333333333333211 368999998876210
Q ss_pred CCCCChhhHHhhHHHHHHHHHHHHhH-------HcCCccEEEecCC--CHHHHHHHHHHcCCCCccc-------------
Q 042524 134 PSKSGSERRQFLNRLKKAWKAMEGLV-------DSGLVRAIGVSNF--GVSQIKELLKFAKIMPAVN------------- 191 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~al~~L~-------~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~~~~------------- 191 (365)
.... .+....+.+++.|.... ..++|--||-.++ +.+.++++++..++.+...
T Consensus 178 --s~~~---G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~ 252 (466)
T TIGR01282 178 --SQSL---GHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENA 252 (466)
T ss_pred --hhhH---HHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 0000 00111222333332211 1367888885554 4567888888877543211
Q ss_pred -ccccCccCchh---HHHHHHH-HcCcEEEEecCCC
Q 042524 192 -QVELHPFWRQD---ELVKFCQ-SKGIHVSAHTPLG 222 (365)
Q Consensus 192 -q~~~n~~~~~~---~ll~~~~-~~gi~via~spla 222 (365)
...+|+..... .+-++.+ +.||..+..+|++
T Consensus 253 ~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~G 288 (466)
T TIGR01282 253 PKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFG 288 (466)
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCC
Confidence 11123322211 2344454 4599888876644
No 68
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=43.53 E-value=2.5e+02 Score=25.36 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=85.0
Q ss_pred HHHHHcCCCEEeCCC-CcCC-----HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccE
Q 042524 41 KTALSVGYRNIDCAH-LYGN-----EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDL 114 (365)
Q Consensus 41 ~~a~~~Gin~~DTA~-~Yg~-----E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl 114 (365)
..|++.|..+||.=+ .-|. ...+.+... . ...+.-|+..+|-.++.|..+..+....- .-|+|||=+
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~-~-----~~~~~pvSAtiGDlp~~p~~~~~aa~~~a-~~GvdyvKv 86 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIREIVA-A-----VPGRKPVSATIGDLPMKPGTASLAALGAA-ATGVDYVKV 86 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHH-H-----cCCCCceEEEecCCCCCchHHHHHHHHHH-hcCCCEEEE
Confidence 567889999999733 3443 555544433 2 23346688888877777877777666655 348898887
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCC------HHHHHHHHHHcCCCC
Q 042524 115 YLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFG------VSQIKELLKFAKIMP 188 (365)
Q Consensus 115 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~------~~~l~~~~~~~~~~~ 188 (365)
=+.-..+. ++..+.+..+.+++.+.-.+-++-.++.+.+. +..+-++...+++
T Consensus 87 Gl~g~~~~-------------------~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~-- 145 (235)
T PF04476_consen 87 GLFGCKDY-------------------DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF-- 145 (235)
T ss_pred ecCCCCCH-------------------HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC--
Confidence 77543222 01111122233334444445567788888873 4556666665554
Q ss_pred cccccc------cCccCc---h--hHHHHHHHHcCcEE
Q 042524 189 AVNQVE------LHPFWR---Q--DELVKFCQSKGIHV 215 (365)
Q Consensus 189 ~~~q~~------~n~~~~---~--~~ll~~~~~~gi~v 215 (365)
+.+++. -++++. + .+.++.|+++|+-+
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 333332 122221 1 56888899988743
No 69
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=43.40 E-value=2.6e+02 Score=25.48 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
.+++.+.+..++.++ -|.|+||+=. .|.. .+ . .+.+..++..+.+.. + .-|.|-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~----------~~-----~----~ee~~r~v~~i~~~~--~--~piSID 76 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG----------LD-----G----VSAMKWLLNLLATEP--T--VPLMLD 76 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC----------CC-----H----HHHHHHHHHHHHHhc--C--CcEEee
Confidence 356677777777665 5999999854 1211 01 0 011223333333332 2 237888
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCccC-chhHHHHHHHHcCcEEEEecC
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPFW-RQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~~-~~~~ll~~~~~~gi~via~sp 220 (365)
+++++.++++++.+.-...+|-+.....+ +..++++.++++|..++.+..
T Consensus 77 T~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 77 STNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred CCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 89999999999874322344444422111 236788999999999998754
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=43.03 E-value=1.2e+02 Score=28.26 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHH
Q 042524 96 IENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVS 175 (365)
Q Consensus 96 i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~ 175 (365)
-+..+-+.|.++|+++|.+-.++.|.. .|. ..+.++.+..+.+...++...+. .+..
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~----------~p~------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~ 83 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKW----------VPQ------------MADAAEVMAGIQRRPGVTYAALT-PNLK 83 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCccc----------ccc------------cccHHHHHHhhhccCCCeEEEEe-cCHH
Confidence 344566669999999999986655543 110 22234555555544446666654 4677
Q ss_pred HHHHHHHHcCCCCccccccc-------CccC-ch------hHHHHHHHHcCcEEEEe
Q 042524 176 QIKELLKFAKIMPAVNQVEL-------HPFW-RQ------DELVKFCQSKGIHVSAH 218 (365)
Q Consensus 176 ~l~~~~~~~~~~~~~~q~~~-------n~~~-~~------~~ll~~~~~~gi~via~ 218 (365)
.++.+++.. .+...+-++. |+-. ++ .+.+++++++|+.+.++
T Consensus 84 ~ie~A~~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 84 GLEAALAAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred HHHHHHHcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 888887653 2111111111 1111 11 46899999999988643
No 71
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=42.88 E-value=72 Score=31.98 Aligned_cols=127 Identities=20% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCEEe--CCCCc---CC-------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCC-ChhHHH-------
Q 042524 38 EAVKTALSVGYRNID--CAHLY---GN-------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMN-SINKIE------- 97 (365)
Q Consensus 38 ~~l~~a~~~Gin~~D--TA~~Y---g~-------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~-~~~~i~------- 97 (365)
+-+....+.|+..+= ||-+| |. -..+..+-+..+. +..+.++|+++=++.... -|..+.
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~-~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 185 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFG-GSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSI 185 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcC-CCCceeEEEEeCCCccccccHHHHHHcCceEE
Confidence 456777788887654 44443 21 3344455555553 235788898888875321 011000
Q ss_pred ---HHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCH
Q 042524 98 ---NYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGV 174 (365)
Q Consensus 98 ---~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~ 174 (365)
-.-.+.-+|+.+.|+|.+- +. ++++++..++.+++|+..+||+-..-+
T Consensus 186 ~vEvd~~ri~kR~~~gyld~~~----~~-------------------------ldeal~~~~~a~~~~~~~SIg~~GNaa 236 (545)
T TIGR01228 186 AVEVDESRIDKRLETKYCDEQT----DS-------------------------LDEALARAEEAKAEGKPISIGLLGNAA 236 (545)
T ss_pred EEEECHHHHHHHHhcCcceeEc----CC-------------------------HHHHHHHHHHHHHcCCceEEEeeccHH
Confidence 1123345788899988764 11 899999999999999999999999888
Q ss_pred HHHHHHHHHcCCCCc--cccccc
Q 042524 175 SQIKELLKFAKIMPA--VNQVEL 195 (365)
Q Consensus 175 ~~l~~~~~~~~~~~~--~~q~~~ 195 (365)
+.+.++++.. +.|+ .-|...
T Consensus 237 dv~~~l~~r~-i~pDlvtDQTSa 258 (545)
T TIGR01228 237 EVLPELLKRG-VVPDVVTDQTSA 258 (545)
T ss_pred HHHHHHHHcC-CCCCCcCCCCcc
Confidence 8888888863 4443 345543
No 72
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=42.58 E-value=2.9e+02 Score=25.92 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCC
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGV 109 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~ 109 (365)
.++..++++.+.+.|++.|.-.- |. ..-+-+.++.. .....-.++.|+|-.. .+.+. -..|...|+
T Consensus 51 ~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i-~~~~~~~~i~itTNG~-------ll~~~-~~~L~~agl 119 (331)
T PRK00164 51 LEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAAL-AALPGIRDLALTTNGY-------LLARR-AAALKDAGL 119 (331)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHH-HhcCCCceEEEEcCch-------hHHHH-HHHHHHcCC
Confidence 56788889999999998776432 22 11122333322 1010123566666542 12222 234555565
Q ss_pred CcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCC----ccEEEecCCCHHHHHHHHHHcC
Q 042524 110 SYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGL----VRAIGVSNFGVSQIKELLKFAK 185 (365)
Q Consensus 110 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gk----ir~iGvS~~~~~~l~~~~~~~~ 185 (365)
+.|- +-+|..+....... .. . ..++.++++++.+++.|. |..+.+-..+.+++.++++...
T Consensus 120 ~~i~-ISlds~~~e~~~~i----~~-~---------~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~ 184 (331)
T PRK00164 120 DRVN-VSLDSLDPERFKAI----TG-R---------DRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAK 184 (331)
T ss_pred CEEE-EEeccCCHHHhccC----CC-C---------CCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHH
Confidence 5442 33444433111100 00 0 127889999999999985 3344444556666666666543
Q ss_pred -CCCcccccccCccCc-----------hhHHHHHHHHcCcEEEEe
Q 042524 186 -IMPAVNQVELHPFWR-----------QDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 186 -~~~~~~q~~~n~~~~-----------~~~ll~~~~~~gi~via~ 218 (365)
....+.-++|.++.. ..++++..+++|+.+...
T Consensus 185 ~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 229 (331)
T PRK00164 185 DRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPR 229 (331)
T ss_pred hCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccccc
Confidence 222232333332211 156888888877655443
No 73
>PRK05414 urocanate hydratase; Provisional
Probab=42.40 E-value=76 Score=31.94 Aligned_cols=127 Identities=21% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCEEe--CCCCc---CC-------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCC-ChhHH--------
Q 042524 38 EAVKTALSVGYRNID--CAHLY---GN-------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMN-SINKI-------- 96 (365)
Q Consensus 38 ~~l~~a~~~Gin~~D--TA~~Y---g~-------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~-~~~~i-------- 96 (365)
+-+...-+.|+..+= ||-+| |. -..+..+-+..+. +..+.++||++=++.... -|..+
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 194 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GDLAGRLVLTAGLGGMGGAQPLAATMAGAVCL 194 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CCCceeEEEEecCCccccccHHHHHhcCceEE
Confidence 456777778887553 44443 21 3344455555543 345788999988875321 01100
Q ss_pred --HHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCH
Q 042524 97 --ENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGV 174 (365)
Q Consensus 97 --~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~ 174 (365)
.-.-.+.-+|+.+.|+|.+- +. ++++++..++.+++|+..+||+-..-+
T Consensus 195 ~vEvd~~ri~kR~~~gyld~~~----~~-------------------------Ldeal~~~~~a~~~~~~~SIg~~GNaa 245 (556)
T PRK05414 195 AVEVDESRIDKRLRTGYLDEKA----DD-------------------------LDEALALAEEAKAAGEPLSIGLLGNAA 245 (556)
T ss_pred EEEECHHHHHHHHhCCcceeEc----CC-------------------------HHHHHHHHHHHHHcCCceEEEEeccHH
Confidence 01123445788899988764 11 899999999999999999999998888
Q ss_pred HHHHHHHHHcCCCCc--cccccc
Q 042524 175 SQIKELLKFAKIMPA--VNQVEL 195 (365)
Q Consensus 175 ~~l~~~~~~~~~~~~--~~q~~~ 195 (365)
+.+.++++.. +.|+ .-|...
T Consensus 246 dv~~~l~~~~-i~pDlvtDQTSa 267 (556)
T PRK05414 246 DVLPELVRRG-IRPDLVTDQTSA 267 (556)
T ss_pred HHHHHHHHcC-CCCCccCcCccc
Confidence 8888888764 4443 345543
No 74
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.37 E-value=2.4e+02 Score=24.93 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEeCC-CCcCC--HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhh
Q 042524 31 TGGELCVEAVKTALSVGYRNIDCA-HLYGN--EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNL 107 (365)
Q Consensus 31 ~~~~~~~~~l~~a~~~Gin~~DTA-~~Yg~--E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 107 (365)
+..++..++++...+.||..|+.. +..+. .+.+....+.. +...+ .+.+. .....+...++.. ...
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-----~~~~~--~~~~~---~~~~~i~~~~~~~-~~~ 79 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-----PNARL--QALCR---ANEEDIERAVEAA-KEA 79 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-----HSSEE--EEEEE---SCHHHHHHHHHHH-HHT
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-----ccccc--ceeee---ehHHHHHHHHHhh-Hhc
Confidence 446778899999999999999999 33333 33444444432 22333 33222 2456677767544 578
Q ss_pred CCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC---CCHHHHHHHHHHc
Q 042524 108 GVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN---FGVSQIKELLKFA 184 (365)
Q Consensus 108 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~---~~~~~l~~~~~~~ 184 (365)
|.|.+.++.-=++...... -.......++.+.+..+.+++.|..-.+++-. ++++.+.++.+..
T Consensus 80 g~~~i~i~~~~s~~~~~~~-------------~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKN-------------LNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEAL 146 (237)
T ss_dssp TSSEEEEEEETSHHHHHHH-------------TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHH
T ss_pred cCCEEEecCcccHHHHHHh-------------hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHH
Confidence 8888776652221000000 00011122556667788888999988888744 4566555554433
Q ss_pred C-CCCcccccc--cCccCch--hHHHHHHHHc----CcEEEEecCCC
Q 042524 185 K-IMPAVNQVE--LHPFWRQ--DELVKFCQSK----GIHVSAHTPLG 222 (365)
Q Consensus 185 ~-~~~~~~q~~--~n~~~~~--~~ll~~~~~~----gi~via~spla 222 (365)
. ..++.+.+. +..+.+. .+++...+++ .+++.++.-++
T Consensus 147 ~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 147 AEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp HHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred HHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 1 122333332 2223333 4666666653 35666665554
No 75
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=40.63 E-value=83 Score=29.27 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=66.9
Q ss_pred HHHHhHHc--CCccEEEecCCCHHHHHHHHHHcCCC-Cc-----ccccccCccCchhHHHHHHHHcCcEEEEecCCCCCC
Q 042524 154 AMEGLVDS--GLVRAIGVSNFGVSQIKELLKFAKIM-PA-----VNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPT 225 (365)
Q Consensus 154 al~~L~~~--Gkir~iGvS~~~~~~l~~~~~~~~~~-~~-----~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~ 225 (365)
.++.+... .++-.+-=++++.+...++.+...-. +. .+.+-+--..|+.++.+.+++-++-++.-++-.+
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss-- 222 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS-- 222 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H--
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc--
Confidence 34445433 36666766777777666665543311 11 1111111123457888889988877777333221
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCC------CHHHHHHHHhhhCC-CeEecCCCCHH
Q 042524 226 SSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKK------TPEQVILRWGLQRG-TSVLPCSLKPD 298 (365)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlAl~w~l~~~-~~vi~g~~~~~ 298 (365)
.-.+|.++|++++. ++.++...|+-... ..+..|+|+|+
T Consensus 223 ----------------------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~ 268 (281)
T PF02401_consen 223 ----------------------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPD 268 (281)
T ss_dssp ----------------------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-H
T ss_pred ----------------------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCH
Confidence 12689999999874 78999999998876 78889999999
Q ss_pred HHHHhh
Q 042524 299 RIRKNI 304 (365)
Q Consensus 299 ql~enl 304 (365)
.+-+.+
T Consensus 269 ~ii~eV 274 (281)
T PF02401_consen 269 WIIEEV 274 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 76
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.71 E-value=4e+02 Score=27.12 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC-CCcccEEEeeCCCCCCCCCCCCCCCCC
Q 042524 57 YGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG-VSYLDLYLMHWPECSASGFGDATDPPS 135 (365)
Q Consensus 57 Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (365)
+|.++.+-+.|++..+ ..+.+=++|.|-|. ++-|-..++...++++ ..-++++.+|.|....
T Consensus 67 ~Gg~~kL~~~I~~~~~-~~~P~~I~V~tTC~-----~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g----------- 129 (513)
T CHL00076 67 RGSQEKVVDNITRKDK-EERPDLIVLTPTCT-----SSILQEDLQNFVDRASIESDSDVILADVNHYRV----------- 129 (513)
T ss_pred cchHHHHHHHHHHHHH-hcCCCEEEECCCCc-----hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcc-----------
Confidence 3544444455544322 22456667777763 3344444444444443 1236899999986610
Q ss_pred CCChhhHHhhHHHHHHHHHHHH-----------hHHcCCccEEEecC------CCHHHHHHHHHHcCCCCcc--------
Q 042524 136 KSGSERRQFLNRLKKAWKAMEG-----------LVDSGLVRAIGVSN------FGVSQIKELLKFAKIMPAV-------- 190 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~al~~-----------L~~~Gkir~iGvS~------~~~~~l~~~~~~~~~~~~~-------- 190 (365)
.........++.+++.+.. -+..++|--||.++ .+...++++++..++.+.+
T Consensus 130 ---~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl 206 (513)
T CHL00076 130 ---NELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSV 206 (513)
T ss_pred ---cHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCH
Confidence 0011111123333333321 12446788998774 3456788888877653211
Q ss_pred ------cccccCccC-ch--hHHHHHHH-HcCcEEEEecCCC
Q 042524 191 ------NQVELHPFW-RQ--DELVKFCQ-SKGIHVSAHTPLG 222 (365)
Q Consensus 191 ------~q~~~n~~~-~~--~~ll~~~~-~~gi~via~spla 222 (365)
-...+|+.. ++ ..+-++.+ +.|+.++...|++
T Consensus 207 ~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 207 EDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred HHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111233322 22 23445554 4699988878876
No 77
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.29 E-value=1.2e+02 Score=27.67 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHc-CCccEEEe
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDS-GLVRAIGV 169 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~-Gkir~iGv 169 (365)
++.+. +..+-+.|.++|+++|.+-+.......... ..++ ....++.++.+++. +.++...+
T Consensus 19 ~~~~~-k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~----~~~~-------------~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 19 FTLEQ-VRAIARALDAAGVPLIEVGHGDGLGGSSLN----YGFA-------------AHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeecCCCCCCcccc----cCCC-------------CCChHHHHHHHHHhccCCEEEEE
Confidence 44444 445555699999999999876432210000 0011 11134455555333 34666665
Q ss_pred c---CCCHHHHHHHHHHcCCCCcccccccCc--cCchhHHHHHHHHcCcEEEEe
Q 042524 170 S---NFGVSQIKELLKFAKIMPAVNQVELHP--FWRQDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 170 S---~~~~~~l~~~~~~~~~~~~~~q~~~n~--~~~~~~ll~~~~~~gi~via~ 218 (365)
. ......++.+.+. .+ +.+.+.... ...-.+.+++++++|+.+...
T Consensus 81 ~~~~~~~~~~i~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 81 LLPGIGTVDDLKMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ecCCccCHHHHHHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 2235566666553 23 433433222 112267899999999876554
No 78
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.64 E-value=3.2e+02 Score=25.20 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCC-CH---HHHHHHHH---HcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNF-GV---SQIKELLK---FAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~-~~---~~l~~~~~---~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~sp 220 (365)
.+.+++.+++.++++.---|++-.| ++ ..++.+++ ..++ +-+-++=-+.+...++.++|+++||..|-.-+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv--dGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV--DGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC--CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 5677888888887755434443332 22 12333333 2333 32333322334446799999999998887644
Q ss_pred CC
Q 042524 221 LG 222 (365)
Q Consensus 221 la 222 (365)
-.
T Consensus 156 Pt 157 (265)
T COG0159 156 PT 157 (265)
T ss_pred CC
Confidence 43
No 79
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=38.57 E-value=1.7e+02 Score=26.96 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHHcCCccEEEecCCC------------HHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHc
Q 042524 146 NRLKKAWKAMEGLVDSGLVRAIGVSNFG------------VSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSK 211 (365)
Q Consensus 146 ~~~~~~~~al~~L~~~Gkir~iGvS~~~------------~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~ 211 (365)
+.+...++...+++++|++-.||=+..+ .+.+..+++.+.-.-..+|..---.... .++-.++++.
T Consensus 104 e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~ 183 (285)
T COG1831 104 EEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEA 183 (285)
T ss_pred HHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHh
Confidence 3466778889999999999888877654 1224445554432113345543333332 6788899998
Q ss_pred Cc
Q 042524 212 GI 213 (365)
Q Consensus 212 gi 213 (365)
|+
T Consensus 184 G~ 185 (285)
T COG1831 184 GI 185 (285)
T ss_pred CC
Confidence 87
No 80
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=38.55 E-value=42 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhh
Q 042524 263 VVSEIADKHKKTPEQVILRWGL 284 (365)
Q Consensus 263 ~l~~la~~~~~s~~qlAl~w~l 284 (365)
-+.+||+++|+++.++|..|+-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4578999999999999999974
No 81
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.15 E-value=2.5e+02 Score=27.23 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=59.3
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC--CCcccEEEeeCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG--VSYLDLYLMHWPECSASGFGDATDP 133 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg--~d~iDl~~lH~p~~~~~~~~~~~~~ 133 (365)
.||.+.-|-+++++..+ ..+.+=++|.|-+-.. -|-..++...+++. .+ +.++.+|.|...... ..
T Consensus 68 V~Gg~~~L~~~i~~~~~-~~~P~~i~v~~tC~~~-----~iGdDi~~v~~~~~~~~~-~~vi~v~t~gf~g~~-----~~ 135 (406)
T cd01967 68 VFGGEKKLKKAIKEAYE-RFPPKAIFVYSTCPTG-----LIGDDIEAVAKEASKELG-IPVIPVNCEGFRGVS-----QS 135 (406)
T ss_pred eeCcHHHHHHHHHHHHH-hCCCCEEEEECCCchh-----hhccCHHHHHHHHHHhhC-CCEEEEeCCCeeCCc-----cc
Confidence 47777777777776543 2234557777777432 23333333333332 22 789999988762100 00
Q ss_pred CCCCChhhHHhhHHHHHHHHHHHHhH---------HcCCccEEEecCCC--HHHHHHHHHHcCC
Q 042524 134 PSKSGSERRQFLNRLKKAWKAMEGLV---------DSGLVRAIGVSNFG--VSQIKELLKFAKI 186 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~al~~L~---------~~Gkir~iGvS~~~--~~~l~~~~~~~~~ 186 (365)
.-.+.+++++-+.. +.+.|--||..++. .+++.++++..++
T Consensus 136 ------------~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi 187 (406)
T cd01967 136 ------------LGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGI 187 (406)
T ss_pred ------------HHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCC
Confidence 11334444444332 34668888877653 4678888887765
No 82
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.05 E-value=3e+02 Score=25.39 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=27.5
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCC
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCA 54 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA 54 (365)
+|+.|.+.+...| +.++-.++++...+.||..|+.+
T Consensus 5 TlRDG~Q~~~~~~-----s~e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 5 GPRDGLQNEKTFI-----PTEDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CCCCCCcCCCCCc-----CHHHHHHHHHHHHHcCCCEEEeC
Confidence 4566777665443 34777899999999999999987
No 83
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.41 E-value=1.6e+02 Score=26.20 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCH
Q 042524 95 KIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGV 174 (365)
Q Consensus 95 ~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~ 174 (365)
..+..+-+.|.++|+++|++- .|.. . ....+.++.+.+.... .+-.+++....
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~----------~------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 66 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFA----------S------------EDDFEQVRRLREALPN--ARLQALCRANE 66 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTS----------S------------HHHHHHHHHHHHHHHS--SEEEEEEESCH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---cccc----------C------------HHHHHHhhhhhhhhcc--cccceeeeehH
Confidence 344555566999999999988 2222 0 1134445555555555 55556666676
Q ss_pred HHHHHHHH---HcCCCCcccccccCccC--------------chhHHHHHHHHcCcEEEE
Q 042524 175 SQIKELLK---FAKIMPAVNQVELHPFW--------------RQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 175 ~~l~~~~~---~~~~~~~~~q~~~n~~~--------------~~~~ll~~~~~~gi~via 217 (365)
..++.+++ .++.+...+-++.|... .-.+.+.++++.|+.+..
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~ 126 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF 126 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe
Confidence 76666544 23332222222223211 115689999999999833
No 84
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=36.55 E-value=1.9e+02 Score=26.93 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=57.5
Q ss_pred cccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcC
Q 042524 193 VELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHK 272 (365)
Q Consensus 193 ~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 272 (365)
+-|--..|+..+.+.+.+-++-++.-++-.+ + -.+|.++|++.|
T Consensus 195 ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSS-------------------N-----------------s~rL~eiA~~~g 238 (294)
T COG0761 195 ICYATQNRQDAVKELAPEVDLVIVVGSKNSS-------------------N-----------------SNRLAEIAKRHG 238 (294)
T ss_pred cchhhhhHHHHHHHHhhcCCEEEEECCCCCc-------------------c-----------------HHHHHHHHHHhC
Confidence 3344445667888999998988888665553 1 168999999998
Q ss_pred C------CHHHHHHHHhhhCC-CeEecCCCCHHHHHHhh
Q 042524 273 K------TPEQVILRWGLQRG-TSVLPCSLKPDRIRKNI 304 (365)
Q Consensus 273 ~------s~~qlAl~w~l~~~-~~vi~g~~~~~ql~enl 304 (365)
. ++.++=..|..... ..+-.|+|+|+-|-+++
T Consensus 239 ~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 239 KPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred CCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 6 67888889988865 67788999999887665
No 85
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.74 E-value=3.7e+02 Score=26.24 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCC-CC---CCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCc
Q 042524 89 SMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSA-SG---FGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLV 164 (365)
Q Consensus 89 ~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gki 164 (365)
+..+.+.+.+.++..+ +|+.++|.+|.+.--.... .. .+. ...|. .+ ...+-.-.+.+.|.+.|..
T Consensus 177 Pgqt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~-~~~~~---~~-----~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 177 PHQTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGK-APLPS---DE-----TTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred CCCCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCC-CCCCC---HH-----HHHHHHHHHHHHHHHcCCc
Confidence 3456777777777655 4899999999886322200 00 000 00110 00 0111122466778888975
Q ss_pred cEEEecCCCH
Q 042524 165 RAIGVSNFGV 174 (365)
Q Consensus 165 r~iGvS~~~~ 174 (365)
++++|||..
T Consensus 247 -~yeisnfa~ 255 (400)
T PRK07379 247 -HYEISNYAK 255 (400)
T ss_pred -eeeeeheEC
Confidence 689999863
No 86
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.54 E-value=4.3e+02 Score=25.75 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcC----CCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKG----SLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG 108 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~----~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg 108 (365)
..+..+.|+.++++|+- ...|+++.++ +++.++++. .++.+.++++. .|...+...++.|
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~-~ai~~w~~~r~~~~i~~e~i~~~p----------~VVpgi~~~I~~~- 103 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELY-AAIAHWFKQRHQWEIKPEWIVFVP----------GVVPGISLAIRAL- 103 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHH-HHHHHHHHHhcCCCCCcceEEEcC----------cchHhHHHHHHHh-
Confidence 56788999999999975 2335554332 334333331 23334433222 3444555555555
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHH-HhHHcCCccEEEecCCCHHHHHHHHHHcCCC
Q 042524 109 VSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAME-GLVDSGLVRAIGVSNFGVSQIKELLKFAKIM 187 (365)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 187 (365)
|+-=|-+.++.|-+ +| +..++..-. ++...-++.-=|-=..+-+.+++++.....+
T Consensus 104 T~~gd~Vvi~tPvY----------~P-------------F~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vk 160 (388)
T COG1168 104 TKPGDGVVIQTPVY----------PP-------------FYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVK 160 (388)
T ss_pred CcCCCeeEecCCCc----------hH-------------HHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCcc
Confidence 34458888888766 22 222221100 0000000000000112566777776665533
Q ss_pred CcccccccCccCc---h---hHHHHHHHHcCcEEEEecCCC
Q 042524 188 PAVNQVELHPFWR---Q---DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 188 ~~~~q~~~n~~~~---~---~~ll~~~~~~gi~via~spla 222 (365)
..+.=.+-|+.-+ . ..+.+.|++|||.||+-.-.+
T Consensus 161 l~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 161 LFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred EEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 2222223344322 1 468889999999999854444
No 87
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=35.05 E-value=1.4e+02 Score=29.29 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=50.5
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spl 221 (365)
++.+.+|++.-.+. ..|=|-++...+.++++...+ +++|+...-. ..-.++...|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57778888876665 667777889999999886544 6777765442 23368999999999999987553
No 88
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=34.86 E-value=3.5e+02 Score=26.91 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred cCcceeecccCC------------hhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 042524 21 IPAIGLGTWQTG------------GELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYC 88 (365)
Q Consensus 21 vs~lglG~~~~~------------~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~ 88 (365)
|.+|.+|.-.+. .+++.+.++.+.+.|+-.|-.--+||-
T Consensus 174 vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl----------------------------- 224 (449)
T PRK09058 174 ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL----------------------------- 224 (449)
T ss_pred CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC-----------------------------
Q ss_pred CCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhH----------HhhHHHHHHHHHHHHh
Q 042524 89 SMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERR----------QFLNRLKKAWKAMEGL 158 (365)
Q Consensus 89 ~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~al~~L 158 (365)
+..+.+.+.+.++..++ |+.++|++|.+.-... ++ +... +.....+-.-.+.+.|
T Consensus 225 PgqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pg----------T~----l~~~~~~g~l~~~~~~~~~~~my~~~~~~L 289 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPG----------TP----LAKAVEKGKLPPPATPAERADMYAYGVEFL 289 (449)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCC----------CH----HHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHcCCccEEEecCC
Q 042524 159 VDSGLVRAIGVSNF 172 (365)
Q Consensus 159 ~~~Gkir~iGvS~~ 172 (365)
.+.|. +++++|+|
T Consensus 290 ~~~Gy-~~yeis~f 302 (449)
T PRK09058 290 AKAGW-RQLSNSHW 302 (449)
T ss_pred HHCCC-eEEeeeee
No 89
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=34.42 E-value=4.6e+02 Score=25.73 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=79.6
Q ss_pred ecccCChhHHHHHHHHHHHcCCCEEeCCCCcCC-------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHH
Q 042524 27 GTWQTGGELCVEAVKTALSVGYRNIDCAHLYGN-------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENY 99 (365)
Q Consensus 27 G~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~-------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~ 99 (365)
|+.+. .+++.+++..|++.|- ...|+. -+.+.+.|..........++|||++-+. ++
T Consensus 75 ~~~~t-s~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~----------qA 138 (447)
T KOG0259|consen 75 PCFRT-SQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS----------QA 138 (447)
T ss_pred ccccC-CHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch----------HH
Confidence 33444 4567788888888873 356775 4445555543333356789999987652 33
Q ss_pred HHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC---C--CH
Q 042524 100 VRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN---F--GV 174 (365)
Q Consensus 100 le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~---~--~~ 174 (365)
+|-.+.-|-...-.+++ -+|.. | +.++......| -||++-+-. | +.
T Consensus 139 Ie~~i~~LA~p~aNILl-PrPGf-----------p-------------~Y~~~a~~~~l----EVR~ydlLPe~~weIDL 189 (447)
T KOG0259|consen 139 IELAISSLANPGANILL-PRPGF-----------P-------------LYDTRAIYSGL----EVRYYDLLPEKDWEIDL 189 (447)
T ss_pred HHHHHHHhcCCCCceec-CCCCC-----------c-------------hHHHhhhhcCc----eeEeecccCcccceech
Confidence 44444444433444444 33333 1 22332222111 266665532 2 12
Q ss_pred HHHHHHHHHcCCCCcccccccCcc----Cch--hHHHHHHHHcCcEEEEecCCCC
Q 042524 175 SQIKELLKFAKIMPAVNQVELHPF----WRQ--DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 175 ~~l~~~~~~~~~~~~~~q~~~n~~----~~~--~~ll~~~~~~gi~via~spla~ 223 (365)
+.++.+.+.-.+ ..++-.+-|+. ..+ +++++.|+++||-||+-..+..
T Consensus 190 ~~veal~DENT~-AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~ 243 (447)
T KOG0259|consen 190 DGVEALADENTV-AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGH 243 (447)
T ss_pred HHHHHhhccCee-EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcce
Confidence 345554433221 12223333332 222 7899999999999998776664
No 90
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.29 E-value=87 Score=28.31 Aligned_cols=71 Identities=24% Similarity=0.393 Sum_probs=43.5
Q ss_pred CCCCccCcceeecc---cCC------hhHHHHH----HHHHHHcCCCEEeCCCC---cC--CHHHHHHHHHHH---hcCC
Q 042524 16 NTGAKIPAIGLGTW---QTG------GELCVEA----VKTALSVGYRNIDCAHL---YG--NEIEVGEALDEA---FKGS 74 (365)
Q Consensus 16 ~tg~~vs~lglG~~---~~~------~~~~~~~----l~~a~~~Gin~~DTA~~---Yg--~E~~lG~al~~~---~~~~ 74 (365)
.||+.+|.+||.+. .+| .+++.++ +.-|.+.||+.|--|-. |. ++....+++... .+ -
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~-l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE-L 143 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH-H
Confidence 79999999999884 344 3455555 45556789999988743 32 244444444321 10 1
Q ss_pred CCCCcEEEEeecC
Q 042524 75 LKREDVFLTSTLY 87 (365)
Q Consensus 75 ~~R~~v~I~tK~~ 87 (365)
..+-+|.++.-+-
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 1366777776663
No 91
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=34.23 E-value=2.3e+02 Score=27.74 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCC-EEeCCCCcCC-HHHHHHHHHHHhcCCCCCCcE-----EEEeecCCCCCChhHHHHHHHHHHHhhC
Q 042524 36 CVEAVKTALSVGYR-NIDCAHLYGN-EIEVGEALDEAFKGSLKREDV-----FLTSTLYCSMNSINKIENYVRVSLKNLG 108 (365)
Q Consensus 36 ~~~~l~~a~~~Gin-~~DTA~~Yg~-E~~lG~al~~~~~~~~~R~~v-----~I~tK~~~~~~~~~~i~~~le~SL~rLg 108 (365)
-.+=++.|++.|-. ..|-+ ..|+ ..+--..|+.. .++-..| ++-......+.+++.+.+.+|+-.+
T Consensus 79 E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~s---~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~--- 151 (423)
T TIGR00190 79 EVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDAV---PVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK--- 151 (423)
T ss_pred HHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHcC---CCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH---
Confidence 34557999999975 44543 4555 22222222221 1111110 0000002234567777777777665
Q ss_pred CCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHH
Q 042524 109 VSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 180 (365)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~ 180 (365)
|-+|.+-+|.-- +.+.++.++++|+ ..|+-+-...-+...
T Consensus 152 -dGVDfmTiH~Gi-----------------------------~~~~~~~~~~~~R--~~giVSRGGs~~~~W 191 (423)
T TIGR00190 152 -DGVDFMTIHAGV-----------------------------LLEYVERLKRSGR--ITGIVSRGGAILAAW 191 (423)
T ss_pred -hCCCEEEEccch-----------------------------hHHHHHHHHhCCC--ccCeecCcHHHHHHH
Confidence 458889999632 2477888999885 466666554444333
No 92
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.13 E-value=1.8e+02 Score=27.86 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=47.5
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEec
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~s 219 (365)
++.+.+|++..-+. ..|=|.++...+..+++...+ +++|....-. ..-.++...|+++||.++.++
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 67778887775554 556677888888888775544 6677765432 223689999999999998765
No 93
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=33.99 E-value=1.5e+02 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCccEEEec-CCCHHHHHHHHHHcCCCCccccccc
Q 042524 162 GLVRAIGVS-NFGVSQIKELLKFAKIMPAVNQVEL 195 (365)
Q Consensus 162 Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~ 195 (365)
+.++.+||. |-+++.+.++++..++ +++|++-
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~~--d~vQLHG 83 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTSI--NTIQLHG 83 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCCC--CEEEECC
Confidence 568899985 7788999999886655 8888874
No 94
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=33.78 E-value=1.1e+02 Score=29.46 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spl 221 (365)
++.+.+|+++..+. ..|=|-++...+..+++...+ +++|+..... ..-.++..+|+++|+.++..+-+
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 56677777775554 556666777788888776544 5566654432 22368899999999998865433
No 95
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=33.63 E-value=64 Score=29.82 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCCC
Q 042524 172 FGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~ 223 (365)
|+...+.++.+..+++..++-..||+-.. ++.++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 44556777777888888888888866544 899999999999999999874
No 96
>PRK14017 galactonate dehydratase; Provisional
Probab=33.62 E-value=1.6e+02 Score=28.50 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=50.0
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~sp 220 (365)
++.+.+|.+...+. ..|=|.++...+..+++.... +++|+...-. ..-..+.+.|+.+||.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 56778888876665 566777888888888886544 7777775543 2237899999999999988754
No 97
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.57 E-value=4.3e+02 Score=25.21 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC---------------------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN---------------------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMN 91 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~---------------------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~ 91 (365)
.+.-.++.++|-+.|+-+|=|.-.+.. ..+|-...+ .-+.++++|=..
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~-------~~kPiIlSTGma---- 157 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK-------KGKPIILSTGMA---- 157 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh-------cCCCEEEEcccc----
Confidence 455678899999999999976544432 122222221 123455555432
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHH-HHHHHHhHHcCCccEEEec
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKA-WKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~L~~~Gkir~iGvS 170 (365)
+-+.|.++++...++ |. .|+.+||+... +. +| .+++ +.+|..|++.= ---||+|
T Consensus 158 ~~~ei~~av~~~r~~-g~--~~i~LLhC~s~--YP------ap-------------~ed~NL~~i~~l~~~F-n~~vGlS 212 (347)
T COG2089 158 TIEEIEEAVAILREN-GN--PDIALLHCTSA--YP------AP-------------FEDVNLKAIPKLAEAF-NAIVGLS 212 (347)
T ss_pred cHHHHHHHHHHHHhc-CC--CCeEEEEecCC--CC------CC-------------HHHhhHHHHHHHHHHh-CCccccc
Confidence 456777777665444 43 39999999766 21 33 3332 45555555443 3469999
Q ss_pred CCCHHHHHHHHHH
Q 042524 171 NFGVSQIKELLKF 183 (365)
Q Consensus 171 ~~~~~~l~~~~~~ 183 (365)
.|+...+.-+...
T Consensus 213 DHT~g~~a~l~Av 225 (347)
T COG2089 213 DHTLGILAPLAAV 225 (347)
T ss_pred cCccchhHHHHHH
Confidence 9998755544443
No 98
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=33.56 E-value=1.9e+02 Score=25.44 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhHH--cCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCC
Q 042524 148 LKKAWKAMEGLVD--SGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 148 ~~~~~~al~~L~~--~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spl 221 (365)
++.+...++.+++ .+. -+.+-++.++.++++++. +.++..+...+. ...++++.++++|..++++.--
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~---~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE---DDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS---SSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc---ccchhhhhhhcCCCEEEEEecc
Confidence 4445566666664 333 577888999999999998 544333333222 2578999999999999997555
No 99
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.15 E-value=1.7e+02 Score=25.54 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=48.3
Q ss_pred eeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCC-HHHHH--HHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHH
Q 042524 25 GLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGN-EIEVG--EALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVR 101 (365)
Q Consensus 25 glG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~-E~~lG--~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le 101 (365)
.+.+..+..++...+.+.|.+.|..|+=|+..|.. -..++ +.+++.+ +.+ +-.|......+.+...+-++
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-----~~~--v~ik~aGGikt~~~~l~~~~ 194 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-----GGR--VGVKAAGGIRTLEDALAMIE 194 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-----CCC--ceEEEeCCCCCHHHHHHHHH
Confidence 34444445677888999999999999999988863 11111 2333321 122 23444333336777777777
Q ss_pred HHHHhhCC
Q 042524 102 VSLKNLGV 109 (365)
Q Consensus 102 ~SL~rLg~ 109 (365)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 77778776
No 100
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.09 E-value=3.3e+02 Score=27.10 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred cCcceeecccCC------------hhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 042524 21 IPAIGLGTWQTG------------GELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYC 88 (365)
Q Consensus 21 vs~lglG~~~~~------------~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~ 88 (365)
+.+|.+|.-.+. .+++.+.++.+-+.|+..+..--+||-
T Consensus 163 ~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~Gl----------------------------- 213 (453)
T PRK13347 163 FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGL----------------------------- 213 (453)
T ss_pred CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeC-----------------------------
Q ss_pred CCCChhHHHHHHHHHHHhhCCCcccEEEe-eCCC-CCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccE
Q 042524 89 SMNSINKIENYVRVSLKNLGVSYLDLYLM-HWPE-CSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRA 166 (365)
Q Consensus 89 ~~~~~~~i~~~le~SL~rLg~d~iDl~~l-H~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~ 166 (365)
+..+.+.+.+.++..+ +|+.++|.+|.+ |.|. ............| ......+....+.+.|.+.|..+
T Consensus 214 Pgqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp--------~~~~~~~~~~~~~~~L~~~Gy~~- 283 (453)
T PRK13347 214 PHQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALP--------DAEERLRQARAVADRLLAAGYVP- 283 (453)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCc--------CHHHHHHHHHHHHHHHHHCCCEE-
Q ss_pred EEecCC
Q 042524 167 IGVSNF 172 (365)
Q Consensus 167 iGvS~~ 172 (365)
+|+++|
T Consensus 284 ~~~~~f 289 (453)
T PRK13347 284 IGLDHF 289 (453)
T ss_pred Eeccce
No 101
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=32.86 E-value=1.4e+02 Score=30.54 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCC
Q 042524 147 RLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 147 ~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla 222 (365)
+..++.+.+.+.++..+|++||+-.+...++...++..+++++.+--.|.-+...-.-++..-..|.-+..-.|+.
T Consensus 411 d~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 411 DYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred CHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcHH
Confidence 3677899999999999999999999999999999999888654333333322222333444445555555555553
No 102
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.69 E-value=1.3e+02 Score=28.69 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEec
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~s 219 (365)
++.+.+|++...|. ..|=|.++...+.++++.... +++|+...-. ..-.++...|+++|+.++.++
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~--d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAV--DILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 56777788877666 667777888999998876544 7777765443 223689999999999987653
No 103
>PLN02489 homocysteine S-methyltransferase
Probab=32.65 E-value=4.4e+02 Score=25.08 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC--------------HHHHHHHHH---HHhcC---C------------CCCCcE
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN--------------EIEVGEALD---EAFKG---S------------LKREDV 80 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~--------------E~~lG~al~---~~~~~---~------------~~R~~v 80 (365)
++...++=+..+++|-+.|-|.....+ +.++-.+++ +.... . ..+.++
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPI 133 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCc
Confidence 445566667778999999987643222 112222221 11100 0 013457
Q ss_pred EEEeecCCCC----------------CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHh
Q 042524 81 FLTSTLYCSM----------------NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQF 144 (365)
Q Consensus 81 ~I~tK~~~~~----------------~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 144 (365)
+|+--+++.. .+.+.+.+....-++.|--..+|++.+-....
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~---------------------- 191 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPN---------------------- 191 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC----------------------
Confidence 7887776532 23466777766667766445699999986544
Q ss_pred hHHHHHHHHHHHHhHHcC--CccEEEecCCC------HHHHHHHHHHcC--CCCcccccccCccCch--hHHHHHHHHc-
Q 042524 145 LNRLKKAWKAMEGLVDSG--LVRAIGVSNFG------VSQIKELLKFAK--IMPAVNQVELHPFWRQ--DELVKFCQSK- 211 (365)
Q Consensus 145 ~~~~~~~~~al~~L~~~G--kir~iGvS~~~------~~~l~~~~~~~~--~~~~~~q~~~n~~~~~--~~ll~~~~~~- 211 (365)
+.|+..+++.+++.+ +--.+.++..+ ...+.+++.... ..++.+-+++. .++ ..+++..+..
T Consensus 192 ---l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~ 266 (335)
T PLN02489 192 ---KLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCT--PPRFIHGLILSIRKVT 266 (335)
T ss_pred ---hHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCC--CHHHHHHHHHHHHhhc
Confidence 667777777777665 44344554311 112333332211 23456677765 332 4556555554
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCCC---HHHHHHHHhhhCCC
Q 042524 212 GIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKT---PEQVILRWGLQRGT 288 (365)
Q Consensus 212 gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s---~~qlAl~w~l~~~~ 288 (365)
.+.+++| |-++ .. +... . . .|. ..++.+ .++.+.+|. ..|.
T Consensus 267 ~~pl~vy-PNaG--~~---~~~~-~-----~-----~~~------------------~~~~~~~~~~~~~~~~~~-~~Ga 310 (335)
T PLN02489 267 SKPIVVY-PNSG--ET---YDGE-A-----K-----EWV------------------ESTGVSDEDFVSYVNKWR-DAGA 310 (335)
T ss_pred CCcEEEE-CCCC--CC---CCCc-c-----C-----ccc------------------CCCCCCHHHHHHHHHHHH-HCCC
Confidence 5666665 3331 10 0000 0 0 000 001122 356677786 3577
Q ss_pred eEecCC--CCHHHHHHhhcccCC
Q 042524 289 SVLPCS--LKPDRIRKNIDIFSW 309 (365)
Q Consensus 289 ~vi~g~--~~~~ql~enl~a~~~ 309 (365)
.+|-|+ ++|+|+++..+.++.
T Consensus 311 ~iIGGCCgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 311 SLIGGCCRTTPNTIRAISKALSE 333 (335)
T ss_pred cEEeeCCCCCHHHHHHHHHHHhc
Confidence 777764 899999988776543
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=32.56 E-value=2.3e+02 Score=27.25 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCH
Q 042524 95 KIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGV 174 (365)
Q Consensus 95 ~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~ 174 (365)
.-+..+-+.|.++|+++|++-..-.|.. .|. + .+.+++++++.. ...++..++. .+.
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~----------vPq---m------ad~~ev~~~i~~---~~~~~~~~l~-~n~ 124 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKW----------VPQ---L------ADAKDVMAAVRN---LEGARFPVLT-PNL 124 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCccc----------ccc---c------ccHHHHHHHHHh---ccCCceeEEc-CCH
Confidence 4556677779999999999876555433 110 0 013445555543 2335555554 477
Q ss_pred HHHHHHHHHcCCCCccc-------ccccCcc-Cch------hHHHHHHHHcCcEEEEe
Q 042524 175 SQIKELLKFAKIMPAVN-------QVELHPF-WRQ------DELVKFCQSKGIHVSAH 218 (365)
Q Consensus 175 ~~l~~~~~~~~~~~~~~-------q~~~n~~-~~~------~~ll~~~~~~gi~via~ 218 (365)
..++.+++... +...+ +...|+- .++ .+++++|+++|+.+.++
T Consensus 125 ~die~A~~~g~-~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 125 KGFEAAIAAGA-KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred HHHHHHHHcCc-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 88888887532 11111 1111211 111 46899999999988643
No 105
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.24 E-value=3.9e+02 Score=24.27 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=84.6
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCC-------C----c---CCHHHHHHHHHHHhcCCCCCCc
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAH-------L----Y---GNEIEVGEALDEAFKGSLKRED 79 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~-------~----Y---g~E~~lG~al~~~~~~~~~R~~ 79 (365)
+|+.|.+.+. |.++.++..++++...+.||..|+.+. . | ..++.+....+.. +..+
T Consensus 7 TlRDG~Q~~~-----~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~-----~~~~ 76 (263)
T cd07943 7 TLRDGMHAVR-----HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL-----KQAK 76 (263)
T ss_pred CCCcCcccCC-----eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc-----cCCE
Confidence 4566776543 445567888999999999999999972 1 2 1144444443321 3334
Q ss_pred EEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhH
Q 042524 80 VFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLV 159 (365)
Q Consensus 80 v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~ 159 (365)
+.+..- +..... +.++..++ .|+|.+-++. + .. +.....+..+.++
T Consensus 77 ~~~~~~--~~~~~~----~~i~~a~~-~g~~~iri~~-~--~s------------------------~~~~~~~~i~~ak 122 (263)
T cd07943 77 LGVLLL--PGIGTV----DDLKMAAD-LGVDVVRVAT-H--CT------------------------EADVSEQHIGAAR 122 (263)
T ss_pred EEEEec--CCccCH----HHHHHHHH-cCCCEEEEEe-c--hh------------------------hHHHHHHHHHHHH
Confidence 332221 111123 34444443 3666655533 1 11 1445677888888
Q ss_pred HcCCccEEEec---CCCHHHHHHHHHHcC-CCCcccccc--cCccCch--hHHHHHHHHc----CcEEEEecCCC
Q 042524 160 DSGLVRAIGVS---NFGVSQIKELLKFAK-IMPAVNQVE--LHPFWRQ--DELVKFCQSK----GIHVSAHTPLG 222 (365)
Q Consensus 160 ~~Gkir~iGvS---~~~~~~l~~~~~~~~-~~~~~~q~~--~n~~~~~--~~ll~~~~~~----gi~via~spla 222 (365)
+.|+--.+.++ .++++.+.++.+... ..++.+.+. +..+.+. .+++..++++ .+++.++.-++
T Consensus 123 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 123 KLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred HCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 88875555542 245555554444321 222332221 1223333 4666666654 24555554444
No 106
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.18 E-value=3.3e+02 Score=26.20 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=55.7
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCC-ccEEEe
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGL-VRAIGV 169 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gk-ir~iGv 169 (365)
++.+ -+..+-+.|.++|+++|.+- +|.. -+.-++.++.+.+.++ .+..++
T Consensus 20 ~s~~-~k~~ia~~L~~~Gv~~IEvG---~p~~-------------------------~~~~~e~i~~i~~~~~~~~i~~~ 70 (365)
T TIGR02660 20 FTAA-EKLAIARALDEAGVDELEVG---IPAM-------------------------GEEERAVIRAIVALGLPARLMAW 70 (365)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEe---CCCC-------------------------CHHHHHHHHHHHHcCCCcEEEEE
Confidence 3443 34455566999999998885 3322 1122555666666543 777777
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCcc--------Cch------hHHHHHHHHcCcEEEE
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHPF--------WRQ------DELVKFCQSKGIHVSA 217 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~--------~~~------~~ll~~~~~~gi~via 217 (365)
+....+.++.+.+. +.+...+-+..|.. .++ .+.+++++++|+.+..
T Consensus 71 ~r~~~~di~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 71 CRARDADIEAAARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred cCCCHHHHHHHHcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 77778888877664 22111111111111 111 3678999999987653
No 107
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=32.01 E-value=63 Score=30.32 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhhCCCccc--EEE-eeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccE
Q 042524 93 INKIENYVRVSLKNLGVSYLD--LYL-MHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRA 166 (365)
Q Consensus 93 ~~~i~~~le~SL~rLg~d~iD--l~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~ 166 (365)
.+...+.+.+.|++||+.+ | .++ -+.+. ..+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~~-------------------------~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEPE-------------------------YSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCHH-------------------------HHHHHHHHHHHHHHCCCEEe
Confidence 3567788899999999853 4 333 22221 26788999999999999755
No 108
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=31.63 E-value=1.2e+02 Score=30.49 Aligned_cols=128 Identities=20% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCCEEe--CCCCc---CC-------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC-hhH--------
Q 042524 37 VEAVKTALSVGYRNID--CAHLY---GN-------EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNS-INK-------- 95 (365)
Q Consensus 37 ~~~l~~a~~~Gin~~D--TA~~Y---g~-------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~-~~~-------- 95 (365)
-+-+....+.|++.+= ||-+| |. -..+..+-+.++. +..+.++||++=++..... |..
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g-~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~ 183 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG-GDLAGKLFLTAGLGGMGGAQPLAATMAGGVG 183 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST-TS-TT-EEEEE--STTCCHHHHHHHHTT-EE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC-CCCcceEEEEecccccccchHHHHHhcCceE
Confidence 3567788889998764 55554 22 2344445555544 4468899999988764210 000
Q ss_pred --HHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCC
Q 042524 96 --IENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFG 173 (365)
Q Consensus 96 --i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~ 173 (365)
+.-.-.+.-+|+.+.|+|.+- +. ++++++..++.+++|+..+||+-..-
T Consensus 184 l~vEvd~~ri~kR~~~g~ld~~~----~~-------------------------ldea~~~~~ea~~~~~~~SIg~~GN~ 234 (546)
T PF01175_consen 184 LIVEVDPSRIEKRLEQGYLDEVT----DD-------------------------LDEALARAKEARAKKEPLSIGLLGNA 234 (546)
T ss_dssp EEEES-HHHHHHHHHTTSSSEEE----SS-------------------------HHHHHHHHHHHHHTT--EEEEEES-H
T ss_pred EEEEECHHHHHHHHhCCCeeEEc----CC-------------------------HHHHHHHHHHhhccCCeeEEEEeccH
Confidence 001123445788889999875 11 89999999999999999999999888
Q ss_pred HHHHHHHHHHcCCCCc--cccccc
Q 042524 174 VSQIKELLKFAKIMPA--VNQVEL 195 (365)
Q Consensus 174 ~~~l~~~~~~~~~~~~--~~q~~~ 195 (365)
.+.++++++.. +.|+ .-|...
T Consensus 235 ad~~~~l~~~~-i~pDl~tDQTS~ 257 (546)
T PF01175_consen 235 ADLWEELVERG-IIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHHHHHTT----SEE---SST
T ss_pred HHHHHHHHHcC-CCCCcccCCCcc
Confidence 88888888763 3333 345543
No 109
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=31.12 E-value=2.1e+02 Score=30.03 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=70.2
Q ss_pred HHHhHHcCCccEEEecCCCHHHHHHHHHHcC--CC--CcccccccCccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCC
Q 042524 155 MEGLVDSGLVRAIGVSNFGVSQIKELLKFAK--IM--PAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGT 230 (365)
Q Consensus 155 l~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~--~~--~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~ 230 (365)
++.+....++-.+-=++.+.+.+.++.+... ++ ...+.+-+-...|+..+.+.|++.++-++.-++-.+
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss------- 219 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS------- 219 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc-------
Confidence 3444334555555555566666555554332 11 112233333344567899999988888777333221
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcCC------CHHHHHHHHhhhCC-CeEecCCCCHHHHHHh
Q 042524 231 SDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHKK------TPEQVILRWGLQRG-TSVLPCSLKPDRIRKN 303 (365)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlAl~w~l~~~-~~vi~g~~~~~ql~en 303 (365)
+ -.+|.++|++.+. ++.++.-.|.-... ..+..|+|+|+.+-+.
T Consensus 220 ------------N-----------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 220 ------------N-----------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred ------------c-----------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 1 1688999998873 67899889987665 6788999999976443
No 110
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=30.56 E-value=1.6e+02 Score=28.39 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=48.2
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spla 222 (365)
++.+.+|++...+. ..|=|-++...+.+++..... +++|+...-. ..-..+...|+.+|+.++..+.+.
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLE 299 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchh
Confidence 56677777776555 667777888888888776544 6667665432 222678999999999988765443
No 111
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=30.29 E-value=4.1e+02 Score=23.99 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCcCCHH--HHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCc
Q 042524 34 ELCVEAVKTALSVGYRNIDCAHLYGNEI--EVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSY 111 (365)
Q Consensus 34 ~~~~~~l~~a~~~Gin~~DTA~~Yg~E~--~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~ 111 (365)
++..+.++.+.+.|++.|-.--.-..++ -.=+++++. -.+++-|.-..... ++.+...+-+ +.|+.++
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-----~g~~~~l~vDan~~-~~~~~a~~~~-~~l~~~~--- 156 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-----VGDDAELRVDANRG-WTPKQAIRAL-RALEDLG--- 156 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCC-cCHHHHHHHH-HHHHhcC---
Confidence 4556667777888988886532211121 111334432 12345555554332 2433332222 3344444
Q ss_pred ccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcc
Q 042524 112 LDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAV 190 (365)
Q Consensus 112 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~ 190 (365)
+.++.-|-. .+-++.+.+|++.-.+. ..|=+-++...+.++++.... ++
T Consensus 157 --i~~iEeP~~--------------------------~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~ 206 (265)
T cd03315 157 --LDYVEQPLP--------------------------ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DA 206 (265)
T ss_pred --CCEEECCCC--------------------------cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CE
Confidence 444555533 01245666677665544 445566788888888776544 66
Q ss_pred cccccCccC---chhHHHHHHHHcCcEEEEecCCCC
Q 042524 191 NQVELHPFW---RQDELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 191 ~q~~~n~~~---~~~~ll~~~~~~gi~via~spla~ 223 (365)
+|+.....- .-.++...|+++|+.++.++.+..
T Consensus 207 v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 207 VNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EEEecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 777655432 236889999999999999866543
No 112
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=30.12 E-value=2.8e+02 Score=25.12 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCCCC--cEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCC
Q 042524 60 EIEVGEALDEAFKGSLKRE--DVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKS 137 (365)
Q Consensus 60 E~~lG~al~~~~~~~~~R~--~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 137 (365)
..++.++++... ..+. .+.++.-+.+..+....+...+.+-+++.+++.- -+.+--.+. . .
T Consensus 69 ~~v~~~a~~~~~---~~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~--~--------~--- 131 (256)
T COG2200 69 RWVLEEACRQLR---TWPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITES--A--------L--- 131 (256)
T ss_pred HHHHHHHHHHHH---hhhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCc--h--------h---
Confidence 456666666541 1122 3777777765434445677788888888886543 333332222 0 0
Q ss_pred ChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCH--HHHHHHHHHcCCCCcccccccCc--------cCch--hHHH
Q 042524 138 GSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGV--SQIKELLKFAKIMPAVNQVELHP--------FWRQ--DELV 205 (365)
Q Consensus 138 ~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~n~--------~~~~--~~ll 205 (365)
....+.+...+..|++.|- .|.+.+|.. ..+..+.+ ++++++-+.-+. .... ..++
T Consensus 132 -------~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv 199 (256)
T COG2200 132 -------IDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIV 199 (256)
T ss_pred -------hcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHH
Confidence 0114467789999999993 566666653 23333332 333433332211 1111 5789
Q ss_pred HHHHHcCcEEEEe
Q 042524 206 KFCQSKGIHVSAH 218 (365)
Q Consensus 206 ~~~~~~gi~via~ 218 (365)
..|++.|+.+++-
T Consensus 200 ~la~~l~~~vvaE 212 (256)
T COG2200 200 ALAHKLGLTVVAE 212 (256)
T ss_pred HHHHHCCCEEEEe
Confidence 9999999999984
No 113
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.87 E-value=4.8e+02 Score=25.71 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred cCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHH-HHHHHhHHcCCc
Q 042524 86 LYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAW-KAMEGLVDSGLV 164 (365)
Q Consensus 86 ~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~L~~~Gki 164 (365)
++.+..+.+.+.+.++..+ +|+.++|.+|.+.-.... ..... ..+ .. ....+.+ .+.+.|.+.|.
T Consensus 200 ~GlP~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T--~l~~~-~~~---~~------~~~~~m~~~~~~~L~~~Gy- 265 (430)
T PRK08208 200 YGIPGQTHASWMESLDQAL-VYRPEELFLYPLYVRPLT--GLGRR-ARA---WD------DQRLSLYRLARDLLLEAGY- 265 (430)
T ss_pred cCCCCCCHHHHHHHHHHHH-hCCCCEEEEccccccCCC--ccchh-cCC---CH------HHHHHHHHHHHHHHHHcCC-
Confidence 3445567888888887776 589999999987643221 00000 001 00 1112222 55667788886
Q ss_pred cEEEecCCCH
Q 042524 165 RAIGVSNFGV 174 (365)
Q Consensus 165 r~iGvS~~~~ 174 (365)
+.+++++|..
T Consensus 266 ~~yei~~far 275 (430)
T PRK08208 266 TQTSMRMFRR 275 (430)
T ss_pred eEEeecceec
Confidence 5699999964
No 114
>PF14502 HTH_41: Helix-turn-helix domain
Probab=29.86 E-value=1.1e+02 Score=20.33 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=25.2
Q ss_pred chHHHHHHHHcCCCH--HHHHHHHhhhCCCeEe
Q 042524 261 LSVVSEIADKHKKTP--EQVILRWGLQRGTSVL 291 (365)
Q Consensus 261 ~~~l~~la~~~~~s~--~qlAl~w~l~~~~~vi 291 (365)
++.+.+++++++++. .|-||+++-..++..+
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 478899999998775 8999999988775443
No 115
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.57 E-value=5.5e+02 Score=25.20 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=34.2
Q ss_pred cCCccEEEecCC------CHHHHHHHHHHcCCCCccc--------------ccccCccCch---hHHHHHH-HHcCcEEE
Q 042524 161 SGLVRAIGVSNF------GVSQIKELLKFAKIMPAVN--------------QVELHPFWRQ---DELVKFC-QSKGIHVS 216 (365)
Q Consensus 161 ~Gkir~iGvS~~------~~~~l~~~~~~~~~~~~~~--------------q~~~n~~~~~---~~ll~~~-~~~gi~vi 216 (365)
+.+|--||.++. +.+.++++++..++.+..+ +...|+.... ..+.++. ++.|+..+
T Consensus 162 ~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~ 241 (430)
T cd01981 162 KPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSV 241 (430)
T ss_pred CCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeE
Confidence 356888887753 3467888888776543211 1123332211 1233333 35699888
Q ss_pred EecCCC
Q 042524 217 AHTPLG 222 (365)
Q Consensus 217 a~spla 222 (365)
...|++
T Consensus 242 ~~~p~G 247 (430)
T cd01981 242 KITPIG 247 (430)
T ss_pred eccCCC
Confidence 777765
No 116
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.26 E-value=4.6e+02 Score=25.80 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC--cccEEEeeCCCCCCCCCCCCCCCC
Q 042524 57 YGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS--YLDLYLMHWPECSASGFGDATDPP 134 (365)
Q Consensus 57 Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d--~iDl~~lH~p~~~~~~~~~~~~~~ 134 (365)
||.|+-|-+++.+.+.+..+.+=++|.|-+- ++-|-..++...+++.-. -+.++.+|.|.....
T Consensus 78 ~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC~-----~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~--------- 143 (427)
T PRK02842 78 ADANEELDRVVEELIKRRPNISVLFLVGSCP-----SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETT--------- 143 (427)
T ss_pred CCcHHHHHHHHHHHHhccCCCCEEEEECCCh-----HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCcccc---------
Confidence 6777777788877443222345567888773 344555555555555544 367888888776110
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHhH-----HcCCccEEEecCC-CHHHHHHHHHHcCCC
Q 042524 135 SKSGSERRQFLNRLKKAWKAMEGLV-----DSGLVRAIGVSNF-GVSQIKELLKFAKIM 187 (365)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~al~~L~-----~~Gkir~iGvS~~-~~~~l~~~~~~~~~~ 187 (365)
. ..-.+.+++++-+.. ..+.|--+|..+. +.+.++++++..++.
T Consensus 144 -----~----~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~ 193 (427)
T PRK02842 144 -----F----TQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIG 193 (427)
T ss_pred -----H----HHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCe
Confidence 0 011233333333322 3467777886543 235788888877764
No 117
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.15 E-value=4.5e+02 Score=24.03 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=70.5
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCC-CCcCC-HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCA-HLYGN-EIEVGEALDEAFKGSLKREDVFLTSTLYCSMN 91 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA-~~Yg~-E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~ 91 (365)
+|+.|.+.+.+. ++.++..++++...+.||..|+.. |.++. +.-.-+.+... . ....++.. + ..
T Consensus 7 TLRDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~---~-~~~~v~~~--~---r~ 72 (262)
T cd07948 7 TLREGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKL---G-LKAKILTH--I---RC 72 (262)
T ss_pred CCCCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhC---C-CCCcEEEE--e---cC
Confidence 457777777544 445778899999999999999985 33333 22222333322 1 12222211 1 12
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecC
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSN 171 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~ 171 (365)
..+.+..+++ .|++.|.++.=-++.......+ ....+.++.+.+..+.+++.|.--.+++..
T Consensus 73 ~~~di~~a~~-----~g~~~i~i~~~~S~~~~~~~~~-------------~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 73 HMDDARIAVE-----TGVDGVDLVFGTSPFLREASHG-------------KSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CHHHHHHHHH-----cCcCEEEEEEecCHHHHHHHhC-------------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3445555443 4888777665211100000000 001122455566678888889766666532
Q ss_pred ---CCHHHHHHHHH
Q 042524 172 ---FGVSQIKELLK 182 (365)
Q Consensus 172 ---~~~~~l~~~~~ 182 (365)
.+++.+.++.+
T Consensus 135 a~r~~~~~l~~~~~ 148 (262)
T cd07948 135 SFRSDLVDLLRVYR 148 (262)
T ss_pred eCCCCHHHHHHHHH
Confidence 34555544443
No 118
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.14 E-value=3.3e+02 Score=26.87 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEe
Q 042524 90 MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGV 169 (365)
Q Consensus 90 ~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGv 169 (365)
+.+++.+.+.+|+-.+ |-+|.+-+|.-- +.+.++.++++|+ ..|+
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-----------------------------~~~~~~~~~~~~R--~~gi 183 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCGV-----------------------------TRETLERLKKSGR--IMGI 183 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch-----------------------------hHHHHHHHHhcCC--ccCe
Confidence 4577777777777665 458889999632 2477888898885 4676
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCccCch-hHHHHHHHHcCcEE
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ-DELVKFCQSKGIHV 215 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~ll~~~~~~gi~v 215 (365)
-+-...-+...+.... .-|+|... +++++.|+++++.+
T Consensus 184 VSRGGs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 184 VSRGGSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred ecCCHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeee
Confidence 6665555444433322 12344433 56777777777655
No 119
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.67 E-value=90 Score=26.91 Aligned_cols=113 Identities=12% Similarity=0.225 Sum_probs=59.7
Q ss_pred CCCCceEEc---CCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHHHHHHHHhcCCCCCCcE
Q 042524 7 SPGSSYFVL---NTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGN---EIEVGEALDEAFKGSLKREDV 80 (365)
Q Consensus 7 ~~~m~~~~l---~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG~al~~~~~~~~~R~~v 80 (365)
.++|-|..+ +.|+.+-.|||++-...+.+..+.|..- +.-+-.+|+.++... .+.+-.+++.. ....|.-.+
T Consensus 19 rpg~~~~~~~aR~l~~~~iNLGfsG~~~le~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~i-R~~hP~tPI 96 (178)
T PF14606_consen 19 RPGMAYPAILARRLGLDVINLGFSGNGKLEPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTI-REAHPDTPI 96 (178)
T ss_dssp SGGGSHHHHHHHHHT-EEEEEE-TCCCS--HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHH-HTT-SSS-E
T ss_pred CCcccHHHHHHHHcCCCeEeeeecCccccCHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHH-HHhCCCCCE
Confidence 455666655 5677777788866544455555555543 667777887777554 44444555432 223466778
Q ss_pred EEEeecCCCC--------CChhHHHHHHHHHHHhhC-CCcccEEEeeCCC
Q 042524 81 FLTSTLYCSM--------NSINKIENYVRVSLKNLG-VSYLDLYLMHWPE 121 (365)
Q Consensus 81 ~I~tK~~~~~--------~~~~~i~~~le~SL~rLg-~d~iDl~~lH~p~ 121 (365)
++++-++... ......++.+++..+.|. -..=+|++++..+
T Consensus 97 llv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 97 LLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp EEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred EEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 8888765432 134566777777777772 2346899998765
No 120
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=28.56 E-value=3.1e+02 Score=22.55 Aligned_cols=46 Identities=7% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC--CCcccEEEeeCCCC
Q 042524 76 KREDVFLTSTLYCSMNSINKIENYVRVSLKNLG--VSYLDLYLMHWPEC 122 (365)
Q Consensus 76 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg--~d~iDl~~lH~p~~ 122 (365)
.|=-+.|+-|++. ...++.|++.+.++.+.+. ....|++++.....
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~ 93 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS 93 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEecccc
Confidence 4777888888765 4567788888888887663 45689999988765
No 121
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.55 E-value=5.3e+02 Score=24.71 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcC-CCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC-CCcccEEEeeCCCCCCCCCCCCCCCCCCCCh
Q 042524 62 EVGEALDEAFKG-SLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG-VSYLDLYLMHWPECSASGFGDATDPPSKSGS 139 (365)
Q Consensus 62 ~lG~al~~~~~~-~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 139 (365)
.+-++++...+. ++....+.|+| +| -+..+.+-.+.-+++|| .+....+-||.++........ ++....
T Consensus 166 ~v~~~i~~l~~~~~i~~r~itvST-~G----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~---p~~~~~- 236 (345)
T PRK14457 166 EVLAAIRCLNQDLGIGQRRITVST-VG----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLI---PSAKNY- 236 (345)
T ss_pred HHHHHHHHHhcccCCccCceEEEC-CC----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhc---CCccCC-
Confidence 344555543111 33344666766 33 22334444444445554 344578889998773222111 111110
Q ss_pred hhHHhhHHHHHHHHHHHH-hHHcCC---ccEEEecC--CCHHHHHHHHHHcC-CCCcccccccCccCch----------h
Q 042524 140 ERRQFLNRLKKAWKAMEG-LVDSGL---VRAIGVSN--FGVSQIKELLKFAK-IMPAVNQVELHPFWRQ----------D 202 (365)
Q Consensus 140 ~~~~~~~~~~~~~~al~~-L~~~Gk---ir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~n~~~~~----------~ 202 (365)
.++++++++.+ +.+.|+ ++++=|.+ .+.+.++++.+... ++..++-++||++... .
T Consensus 237 -------~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~ 309 (345)
T PRK14457 237 -------PIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQ 309 (345)
T ss_pred -------CHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHH
Confidence 16677767655 555664 56665554 45566666665443 3446777888886421 3
Q ss_pred HHHHHHHHcCcEEEEecCCCC
Q 042524 203 ELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 203 ~ll~~~~~~gi~via~spla~ 223 (365)
.+.+..+++|+.+......+.
T Consensus 310 ~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 310 AFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHHCCCeEEEeCCCCC
Confidence 456677788999988877764
No 122
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=28.53 E-value=3.5e+02 Score=24.19 Aligned_cols=84 Identities=6% Similarity=0.102 Sum_probs=53.4
Q ss_pred hHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHHHHHHHcC---------
Q 042524 202 DELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVSEIADKHK--------- 272 (365)
Q Consensus 202 ~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--------- 272 (365)
.++....++.|+..+++..+.. .. ...+++.+|++.|
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s------------------~~----------------qr~~~e~vc~~~gl~~~~PLW~ 120 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES------------------NY----------------QKSRIDKVCRELGLKSIAPLWH 120 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc------------------HH----------------HHHHHHHHHHHcCCEEeccccC
Confidence 4566777777887777766653 00 1256777787765
Q ss_pred CCHHHHHHHHhhhCC-CeEecCCCCHHHHHHhhcccCCcCCHHHHHHHhcccc
Q 042524 273 KTPEQVILRWGLQRG-TSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEP 324 (365)
Q Consensus 273 ~s~~qlAl~w~l~~~-~~vi~g~~~~~ql~enl~a~~~~Lt~e~~~~l~~~~~ 324 (365)
.+..++ +.++ ..| -++|+++++. .|.+. .++..|+++.+++|.++.+
T Consensus 121 ~d~~~l-~e~i-~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 121 ADPEKL-MYEV-AEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred CCHHHH-HHHH-HcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 455665 4654 777 4566655433 35433 3567899999998887654
No 123
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=28.26 E-value=2.4e+02 Score=26.54 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=51.1
Q ss_pred HHHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCCCC
Q 042524 151 AWKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 151 ~~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spla~ 223 (365)
-++.+.+|++.-.+. ..|=|.++...+..++..... +++|+...-. ..-.++...|+++|+.++..+.+..
T Consensus 211 ~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 211 DLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred HHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 357778887776554 567777888888888876554 6677765442 2236899999999999998765543
No 124
>PRK06361 hypothetical protein; Provisional
Probab=28.24 E-value=4e+02 Score=23.12 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHcCCCEEeCCCCcCC---HHHHH---HHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhh
Q 042524 34 ELCVEAVKTALSVGYRNIDCAHLYGN---EIEVG---EALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNL 107 (365)
Q Consensus 34 ~~~~~~l~~a~~~Gin~~DTA~~Yg~---E~~lG---~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rL 107 (365)
....++++.|.+.|+..|=-+++... ...+- +..++. . ....=+++...-+.. ..+..+ ..+...+.++
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~-~~~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~~ 84 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-E-LYWDIEVIPGVELTH--VPPKLI-PKLAKKARDL 84 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-h-hcCCCEEEEEEEEcc--cCchhh-chHHHHHHHC
Confidence 34678999999999998877777542 11111 111111 0 001223343333332 222333 3344566666
Q ss_pred CCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCC
Q 042524 108 GVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIM 187 (365)
Q Consensus 108 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 187 (365)
+ +|+..+|.... . .+ .. . ..-.++.+.|++.-+|=-..-...+.+++...++
T Consensus 85 ~---~~~~svH~~~~--~-------~~-------------~~-~-~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~- 136 (212)
T PRK06361 85 G---AEIVVVHGETI--V-------EP-------------VE-E-GTNLAAIECEDVDILAHPGLITEEEAELAAENGV- 136 (212)
T ss_pred C---CEEEEECCCCc--c-------hh-------------hh-h-hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe-
Confidence 5 46668995432 0 11 00 0 0014577888876666322211222333333332
Q ss_pred Cccccccc--CccCchhHHHHHHHHcCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccchHHH
Q 042524 188 PAVNQVEL--HPFWRQDELVKFCQSKGIHVSAHTPLGVPTSSPGTSDSGSGGEDETGTPRISFRRSRSVHGPMLKLSVVS 265 (365)
Q Consensus 188 ~~~~q~~~--n~~~~~~~ll~~~~~~gi~via~spla~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (365)
.+.++. ........+++.|++.|+.++.-|.-.. +......+.+.
T Consensus 137 --~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~-------------------------------~~d~~~~~~~~ 183 (212)
T PRK06361 137 --FLEITARKGHSLTNGHVARIAREAGAPLVINTDTHA-------------------------------PSDLITYEFAR 183 (212)
T ss_pred --EEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCC-------------------------------HHHHHHHHHHH
Confidence 222222 1122336899999999999876554432 01111236777
Q ss_pred HHHHHcCCCHHHHHHHH
Q 042524 266 EIADKHKKTPEQVILRW 282 (365)
Q Consensus 266 ~la~~~~~s~~qlAl~w 282 (365)
.++++.|.+..++---+
T Consensus 184 ~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 184 KVALGAGLTEKELEEAL 200 (212)
T ss_pred HHHcCCCCCHHHHHHHH
Confidence 88888888887765444
No 125
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=28.05 E-value=5.5e+02 Score=24.66 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCCcEEEEeecCCC--CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHH
Q 042524 76 KREDVFLTSTLYCS--MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWK 153 (365)
Q Consensus 76 ~R~~v~I~tK~~~~--~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (365)
...-++|.+|+--. ....+.+.+.+.+-++.+|....|++.+..-.. . .+++.++
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g----------~-------------gv~eL~~ 146 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG----------N-------------GIDELLD 146 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC----------C-------------CHHHHHH
Confidence 35567899998532 223456666676677778765446766554322 0 1778888
Q ss_pred HHHHhHHcCCccEEEecCCCHHHHHHHH
Q 042524 154 AMEGLVDSGLVRAIGVSNFGVSQIKELL 181 (365)
Q Consensus 154 al~~L~~~Gkir~iGvS~~~~~~l~~~~ 181 (365)
.+.++.+.+.|-.+|.+|..-..+-..+
T Consensus 147 ~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 147 KIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred HHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 8887766678999999999877654444
No 126
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.69 E-value=5e+02 Score=24.12 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHHhhCCCcccEEEee-CCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEec
Q 042524 92 SINKIENYVRVSLKNLGVSYLDLYLMH-WPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVS 170 (365)
Q Consensus 92 ~~~~i~~~le~SL~rLg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS 170 (365)
+++.+.+..++.+ .-|.|.||+=--- +|.. ..... .+.+..+...++.+++.+. -|.|-
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga-------------~~vs~----eeE~~Rv~pvI~~l~~~~~--~ISID 82 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDA-------------RPVSP----ADEIRRIAPLLDALSDQMH--RVSID 82 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCC-------------CcCCH----HHHHHHHHHHHHHHHhCCC--cEEEE
Confidence 4555555555544 4577777775432 2322 01111 1224445566777777653 48999
Q ss_pred CCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEecCCC
Q 042524 171 NFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla 222 (365)
++.++.++++++.. .. .+|-+ +-+ ...++.+.+.+.+++++.+.-.+
T Consensus 83 T~~~~va~~al~aG-ad-iINDV--sg~-~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 83 SFQPETQRYALKRG-VG-YLNDI--QGF-PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CCCHHHHHHHHHcC-CC-EEEeC--CCC-CchHHHHHHHHcCCCEEEEecCC
Confidence 99999999999864 22 22333 223 35688999999999999876544
No 127
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.59 E-value=5.4e+02 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.9
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCC
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCA 54 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA 54 (365)
+|+.|.+... |+++.++..++++..-+.||..|+.+
T Consensus 9 TLRDG~q~~~-----~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 9 TLRDGMHAIR-----HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCCCCcCCC-----CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4566666543 55667888899999999999999994
No 128
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.19 E-value=4.5e+02 Score=26.26 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-----cccEEEeeCCCCCCCCCCC
Q 042524 55 HLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-----YLDLYLMHWPECSASGFGD 129 (365)
Q Consensus 55 ~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-----~iDl~~lH~p~~~~~~~~~ 129 (365)
-.||.+.-|-++|++..+. .+.+-++|.|-+-. +-|-..++...+++..+ .+.++.++.|+....
T Consensus 72 ~VfGg~~~L~~aI~~~~~~-~~P~~I~V~ttC~~-----eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~---- 141 (455)
T PRK14476 72 TILGGDENVEEAILNICKK-AKPKIIGLCTTGLT-----ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGA---- 141 (455)
T ss_pred eEeCCHHHHHHHHHHHHHh-hCCCEEEEeCcchH-----hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCc----
Confidence 3578877777777665332 23456677777632 23333344444444322 367888998876110
Q ss_pred CCCCCCCCChhhHHhhHHHHHHHHHHHH-h--------HHcCCccEEEecCC---CHHHHHHHHHHcCCC
Q 042524 130 ATDPPSKSGSERRQFLNRLKKAWKAMEG-L--------VDSGLVRAIGVSNF---GVSQIKELLKFAKIM 187 (365)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-L--------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~ 187 (365)
.. .-.+.++.++-+ + ++.++|--||-+++ +.+.++++++..++.
T Consensus 142 ----------~~----~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~ 197 (455)
T PRK14476 142 ----------LE----DGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLE 197 (455)
T ss_pred ----------HH----HHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCc
Confidence 00 112333333322 1 13466888874443 456788888777654
No 129
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.91 E-value=3.3e+02 Score=26.70 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCC-CcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCC
Q 042524 55 HLYGNEIEVGEALDEAFKGSLKR-EDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDP 133 (365)
Q Consensus 55 ~~Yg~E~~lG~al~~~~~~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 133 (365)
-.||.+.-|-++|++..+. .++ +-++|.|-+...- --+++..-+++.-++.+ -++++.+|.|+.....
T Consensus 67 ~VfGg~~~L~~aI~~~~~~-~p~p~~i~V~~tc~~~l-iGdDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~~------- 135 (415)
T cd01977 67 VVFGGEKKLKKNIIEAFKE-FPDIKRMTVYTTCTTAL-IGDDIKAVAKEVMEELP--DVDIFVCNAPGFAGPS------- 135 (415)
T ss_pred eeeccHHHHHHHHHHHHHh-CCCCcEEEEECCCchhh-hcCCHHHHHHHHHHhcC--CCeEEEEeCCCcCCcc-------
Confidence 4578777777888765442 233 3477888774321 12233333333222332 2689999988772110
Q ss_pred CCCCChhhHHhhHHHHHHHHHHHHhH-----HcCCccEEEecCCC--HHHHHHHHHHcCCC
Q 042524 134 PSKSGSERRQFLNRLKKAWKAMEGLV-----DSGLVRAIGVSNFG--VSQIKELLKFAKIM 187 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~al~~L~-----~~Gkir~iGvS~~~--~~~l~~~~~~~~~~ 187 (365)
....+....+.+++.+.... ..++|--||-.++. .+.+.++++..+++
T Consensus 136 ------~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~~d~~ei~~lL~~~Gl~ 190 (415)
T cd01977 136 ------QSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQ 190 (415)
T ss_pred ------hhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCcccHHHHHHHHHHcCCe
Confidence 00001111122233322111 24678888854443 35688888877653
No 130
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=26.90 E-value=7.4e+02 Score=25.81 Aligned_cols=211 Identities=17% Similarity=0.067 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHHcCCCEEeCCCCcCC-------------HHHHHHHHHHHhcCCCCCCcEEEEeecCCCC-------CC
Q 042524 33 GELCVEAVKTALSVGYRNIDCAHLYGN-------------EIEVGEALDEAFKGSLKREDVFLTSTLYCSM-------NS 92 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DTA~~Yg~-------------E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~-------~~ 92 (365)
++...++=+..+++|-+.+.|...+.+ ++++..+++-. +.....+++|+-=+++.. .+
T Consensus 42 Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA--r~a~~~~~~VagsiGP~g~~~~~~~~~ 119 (612)
T PRK08645 42 PELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA--REAAGDDVYVAGTIGPIGGRGPLGDIS 119 (612)
T ss_pred HHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCCCCCCCC
Confidence 455566667778999999988655443 22223332211 001113477777777532 35
Q ss_pred hhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcC-CccEEEecC
Q 042524 93 INKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSG-LVRAIGVSN 171 (365)
Q Consensus 93 ~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~G-kir~iGvS~ 171 (365)
.+.+.+....-.+.|.-.-+|++.+-.... +.|+..+++.+++.+ +=-.+.++-
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~-------------------------~~Ea~a~~~a~~~~~~~p~~~Sf~~ 174 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETFYD-------------------------LEELLLALEAAREKTDLPIIAQVAF 174 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEccCC-------------------------HHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 677777777777777556699999986554 666666666666665 322334432
Q ss_pred ---------CCHHHHHHHHHHcCCCCcccccccCc-cCchhHHHHHHHH-cCcEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 042524 172 ---------FGVSQIKELLKFAKIMPAVNQVELHP-FWRQDELVKFCQS-KGIHVSAHTPLGVPTSSPGTSDSGSGGEDE 240 (365)
Q Consensus 172 ---------~~~~~l~~~~~~~~~~~~~~q~~~n~-~~~~~~ll~~~~~-~gi~via~spla~G~l~~~~~~~~~~~~~~ 240 (365)
.+...+.+.+.. ..++.+-+++.. ...-..+++.... .++.+++| |=++ ... + .+
T Consensus 175 ~~~g~l~~G~~~~~~~~~~~~--~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy-pNaG--~~~--~------~~- 240 (612)
T PRK08645 175 HEDGVTQNGTSLEEALKELVA--AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAY-PNAG--LPE--Y------VD- 240 (612)
T ss_pred CCCCeeCCCCCHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE-ECCC--CCC--C------CC-
Confidence 123333333332 235667777653 2211444444444 25566655 2221 100 0 00
Q ss_pred CCCCccccccccCCCCCCccchHHHHHHHHcCCCHHHHHHHHhhhCCCeEecCC--CCHHHHHHhhcccC
Q 042524 241 TGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCS--LKPDRIRKNIDIFS 308 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlAl~w~l~~~~~vi~g~--~~~~ql~enl~a~~ 308 (365)
... .+ . ..... .++.+..|.-. |..+|-|+ ++|+|+++..+.++
T Consensus 241 -~~~-------~~-~---~~p~~-----------~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 241 -GRY-------VY-S---ANPEY-----------FAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred -Ccc-------cc-C---CCHHH-----------HHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 000 00 0 00011 35667778654 77777763 78999998888776
No 131
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=26.30 E-value=1.7e+02 Score=25.00 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKI 186 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 186 (365)
..++.+.|+.|++.| ++-.-+||.+...+...++..++
T Consensus 94 ~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 94 HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGL 131 (198)
T ss_pred CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCC
Confidence 345678899999988 45556788888877777776553
No 132
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.10 E-value=1.1e+02 Score=30.42 Aligned_cols=103 Identities=26% Similarity=0.185 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC-h--------hHHHHHH--HHHHHhhCCCcccEEEeeCCCCCCCCCC
Q 042524 60 EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNS-I--------NKIENYV--RVSLKNLGVSYLDLYLMHWPECSASGFG 128 (365)
Q Consensus 60 E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~-~--------~~i~~~l--e~SL~rLg~d~iDl~~lH~p~~~~~~~~ 128 (365)
|.++ ++-+..+. +--+.++++++-++..... + -.|.-.+ .+.-+||.+.|+|..- +
T Consensus 151 eT~~-~~~r~h~~-gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a----~------- 217 (561)
T COG2987 151 ETFA-EAGRQHFG-GDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA----E------- 217 (561)
T ss_pred HHHH-HHHHHhcC-CCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc----C-------
Confidence 4444 33333333 3357888888887643210 0 0011112 2233688889988532 1
Q ss_pred CCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcc--cccc
Q 042524 129 DATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAV--NQVE 194 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~--~q~~ 194 (365)
+++|+++..++..++|+-.+||+-..-++-+.++++.. +.|++ -|..
T Consensus 218 ------------------~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~pD~vtDQTs 266 (561)
T COG2987 218 ------------------TLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRPDLVTDQTS 266 (561)
T ss_pred ------------------CHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCCceeccccc
Confidence 18999999999999999999999998888888888764 44443 3544
No 133
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.97 E-value=93 Score=24.13 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEeCCCCcC--CHHHHHHHHHHHhcCCCCCCcEEEEeecCC-CC-----------------CChhHH
Q 042524 37 VEAVKTALSVGYRNIDCAHLYG--NEIEVGEALDEAFKGSLKREDVFLTSTLYC-SM-----------------NSINKI 96 (365)
Q Consensus 37 ~~~l~~a~~~Gin~~DTA~~Yg--~E~~lG~al~~~~~~~~~R~~v~I~tK~~~-~~-----------------~~~~~i 96 (365)
...---++++|.=|+-|-..|. +|.++---|-+ ..+++++++|+-+ .. -....+
T Consensus 23 YsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~v 96 (117)
T COG3215 23 YSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKV 96 (117)
T ss_pred HHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC------chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhH
Confidence 3444456899999999999994 46555333322 3668999999831 10 123478
Q ss_pred HHHHHHHHH
Q 042524 97 ENYVRVSLK 105 (365)
Q Consensus 97 ~~~le~SL~ 105 (365)
+.++|.-|-
T Consensus 97 r~~IE~~Lg 105 (117)
T COG3215 97 RNQIETLLG 105 (117)
T ss_pred HHHHHHHHH
Confidence 888888774
No 134
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.82 E-value=67 Score=27.33 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHcC-CccEEEecCCC--HHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEe
Q 042524 148 LKKAWKAMEGLVDSG-LVRAIGVSNFG--VSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 148 ~~~~~~al~~L~~~G-kir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~ 218 (365)
..+++.+|.++++.| +|..+|..+.. ...+.+++ +. .+.+..|+-...-...+..+++.|+.++.-
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEEC
Confidence 568899999999776 56666666654 34444444 33 445555543222266788888999998884
No 135
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.73 E-value=68 Score=26.14 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.3
Q ss_pred hHHHHHHHHcCcEEEEecCCC
Q 042524 202 DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 202 ~~ll~~~~~~gi~via~spla 222 (365)
.++++.|+++||.+++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 789999999999999997776
No 136
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=25.54 E-value=4.3e+02 Score=22.57 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=46.6
Q ss_pred ceeecccCCh-hHHHHHHHHHHHcCCCEEeCCCCcCC----HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHH
Q 042524 24 IGLGTWQTGG-ELCVEAVKTALSVGYRNIDCAHLYGN----EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIEN 98 (365)
Q Consensus 24 lglG~~~~~~-~~~~~~l~~a~~~Gin~~DTA~~Yg~----E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~ 98 (365)
+.+|+-+.|+ .+|..+-+. .|+.++||...|-. ..-+|...+..+. +.+++ .-..+..
T Consensus 4 iilG~pGaGK~T~A~~La~~---~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~----~g~lv----------~d~i~~~ 66 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK---LGLPHLDTGDILRAAIAERTELGEEIKKYID----KGELV----------PDEIVNG 66 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH---hCCcEEcHhHHhHhhhccCChHHHHHHHHHH----cCCcc----------chHHHHH
Confidence 5678877774 445555444 99999999988854 3455665555422 22211 3334556
Q ss_pred HHHHHHHhhCCCcccEEEeeCCCC
Q 042524 99 YVRVSLKNLGVSYLDLYLMHWPEC 122 (365)
Q Consensus 99 ~le~SL~rLg~d~iDl~~lH~p~~ 122 (365)
.++.-|.+. |....+.+-+...
T Consensus 67 ~v~~rl~~~--d~~~~~I~dg~PR 88 (178)
T COG0563 67 LVKERLDEA--DCKAGFILDGFPR 88 (178)
T ss_pred HHHHHHHhh--cccCeEEEeCCCC
Confidence 677777766 3333444444433
No 137
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.42 E-value=5.3e+02 Score=25.35 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=59.7
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPS 135 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (365)
.||.+.-|-+++++..+ ..+.+-++|.|-+.. +-|-..++...+++..-.++++.+|.|...... .
T Consensus 67 V~Gg~~kL~~~I~~~~~-~~~p~~I~V~ttC~~-----~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~------~-- 132 (427)
T cd01971 67 VFGGEDRLRELIKSTLS-IIDADLFVVLTGCIA-----EIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNN------Y-- 132 (427)
T ss_pred EeCCHHHHHHHHHHHHH-hCCCCEEEEEcCCcH-----HHhhcCHHHHHHHhhhcCCCEEEEECCCcCccc------c--
Confidence 47876667777766433 234566778887743 233333333333331113789999998772110 0
Q ss_pred CCChhhHHhhHHHHHHHHHHHH-h------HHcCCccEEEecC-------CCHHHHHHHHHHcCCCC
Q 042524 136 KSGSERRQFLNRLKKAWKAMEG-L------VDSGLVRAIGVSN-------FGVSQIKELLKFAKIMP 188 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~al~~-L------~~~Gkir~iGvS~-------~~~~~l~~~~~~~~~~~ 188 (365)
.-.+.+++++-+ + ++.+.|.-||..+ -+.+.++++++..++.+
T Consensus 133 ----------~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v 189 (427)
T cd01971 133 ----------AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKV 189 (427)
T ss_pred ----------cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeE
Confidence 013333333332 2 2345688888642 23578889988877643
No 138
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.41 E-value=6.4e+02 Score=24.57 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC-cccEEEeeCCCCCCCCCCCCCC
Q 042524 54 AHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS-YLDLYLMHWPECSASGFGDATD 132 (365)
Q Consensus 54 A~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d-~iDl~~lH~p~~~~~~~~~~~~ 132 (365)
.-.||.+..|-+++++..+. .+.+-++|.|-+... -|-..++...+++..+ .+.++.+|.|......
T Consensus 65 d~VfGg~~~L~~~i~~~~~~-~~P~~i~v~~tC~~~-----~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~------ 132 (410)
T cd01968 65 DVIFGGEKKLYKAILEIIER-YHPKAVFVYSTCVVA-----LIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNK------ 132 (410)
T ss_pred ceeeccHHHHHHHHHHHHHh-CCCCEEEEECCCchh-----hhccCHHHHHHHHHHhhCCCEEEEECCCcccCh------
Confidence 34588877777887765442 245567788877432 2333333333333211 3678899988761110
Q ss_pred CCCCCChhhHHhhHHHHHHHHHHHHhH---------HcCCccEEEecCCC--HHHHHHHHHHcCCC
Q 042524 133 PPSKSGSERRQFLNRLKKAWKAMEGLV---------DSGLVRAIGVSNFG--VSQIKELLKFAKIM 187 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~al~~L~---------~~Gkir~iGvS~~~--~~~l~~~~~~~~~~ 187 (365)
. .-.+.+++++-+.. ..+.|--||-.++. .+.++++++..+++
T Consensus 133 ~------------~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~ 186 (410)
T cd01968 133 N------------LGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIR 186 (410)
T ss_pred h------------HHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCe
Confidence 0 11333444433222 14678888844433 45788888877754
No 139
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.14 E-value=2.4e+02 Score=24.87 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHhHHcCCccEEEecC-CCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEE
Q 042524 151 AWKAMEGLVDSGLVRAIGVSN-FGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 151 ~~~al~~L~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via 217 (365)
.++.+++++++..=-.||..+ .+.++++++++... .+. .++. -+.+++++|+++||.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi-----vsP~-~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI-----VSPG-LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE-----ECCC-CCHHHHHHHHHcCCcEEC
Confidence 345556666553335688877 46788888877543 111 2222 246999999999997776
No 140
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.95 E-value=1.5e+02 Score=21.85 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=30.3
Q ss_pred HHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEEec
Q 042524 155 MEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSAHT 219 (365)
Q Consensus 155 l~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via~s 219 (365)
+++|++.||+ .+| ..+...+++....+.+++--..+. .....+..+|++++|.++-+.
T Consensus 3 ~~~~~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 3556666653 234 245555555444333333222222 122567778888888776654
No 141
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=24.84 E-value=92 Score=29.69 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhhCC--CcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCcc
Q 042524 94 NKIENYVRVSLKNLGV--SYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVR 165 (365)
Q Consensus 94 ~~i~~~le~SL~rLg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir 165 (365)
+...+.+.+.+++||+ |+-.-+.-+.++ ..+.+.+.+.+|.++|.|-
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~-------------------------~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPYKTMDPE-------------------------YMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCeECCCHH-------------------------HHHHHHHHHHHHHHCCCEe
Confidence 3456777889999998 443333222221 2678899999999999974
No 142
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=24.61 E-value=1.7e+02 Score=29.01 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=60.2
Q ss_pred CcCCHHHHHHHHHHHhcCCCCC-CcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCc-ccEEEeeCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKR-EDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSY-LDLYLMHWPECSASGFGDATDP 133 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R-~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~-iDl~~lH~p~~~~~~~~~~~~~ 133 (365)
.||.+.-|-++|++..+. .++ +-++|.|-+.. +-|-..++...+++..++ +.++.+|.|+.....+ .
T Consensus 98 V~Gg~~~L~~aI~~~~~~-~~p~~~I~V~~tC~~-----~liGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~-----~ 166 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTE-FPLIKAISVYATCPT-----GLIGDDIEAVAKEVSKEIGKDVVAVNCPGFAGVSQ-----S 166 (443)
T ss_pred eeCcHHHHHHHHHHHHHh-CCccceEEEECCChH-----HHhccCHHHHHHHHHHhcCCCEEEEecCCccCCcc-----c
Confidence 478777777777765442 244 66778887743 233333444444333211 7899999987721100 0
Q ss_pred CCCCChhhHHhhHHHHHHHHHHHHh-----HHcCCccEEEecCC--CHHHHHHHHHHcCCCC
Q 042524 134 PSKSGSERRQFLNRLKKAWKAMEGL-----VDSGLVRAIGVSNF--GVSQIKELLKFAKIMP 188 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~al~~L-----~~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~ 188 (365)
. .+....+.+++.|... ++.++|--||-.++ +.+.+.++++..++++
T Consensus 167 ~--------G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 167 K--------GHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred h--------HHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 0 0111122223332211 13577888885554 3457888888777543
No 143
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.40 E-value=2.6e+02 Score=24.63 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCccEEEec-CCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHH-cCcEEE
Q 042524 162 GLVRAIGVS-NFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQS-KGIHVS 216 (365)
Q Consensus 162 Gkir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~-~gi~vi 216 (365)
+.++.+||. +-+++.+.++++...+ +++|++-+. ..+.+...++ .++.++
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~~~~--d~vQLHg~e---~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVETVPL--DLLQLHGDE---TPEFCRQLKRRYGLPVI 104 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcCC--CEEEECCCC---CHHHHHHHHhhcCCcEE
Confidence 568999987 5678888888887655 888986532 2334444443 345544
No 144
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.29 E-value=5.3e+02 Score=23.28 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcC-CccEEEe
Q 042524 91 NSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSG-LVRAIGV 169 (365)
Q Consensus 91 ~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~G-kir~iGv 169 (365)
++.+ -+..+-+.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..++
T Consensus 17 ~~~~-~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------------~~~~~e~~~~l~~~~~~~~~~~~ 67 (259)
T cd07939 17 FSRE-EKLAIARALDEAGVDEIEVGI---PAM-------------------------GEEEREAIRAIVALGLPARLIVW 67 (259)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEec---CCC-------------------------CHHHHHHHHHHHhcCCCCEEEEe
Confidence 3443 445555669999999999853 211 011245556666533 4777777
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccc--cCcc------C--ch------hHHHHHHHHcCcEEEEe
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVE--LHPF------W--RQ------DELVKFCQSKGIHVSAH 218 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~--~n~~------~--~~------~~ll~~~~~~gi~via~ 218 (365)
+....+.++.+.+. +++ .+.+- .|.. . ++ .+.+.+|+++|+.+...
T Consensus 68 ~r~~~~~v~~a~~~-g~~--~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 129 (259)
T cd07939 68 CRAVKEDIEAALRC-GVT--AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVG 129 (259)
T ss_pred ccCCHHHHHHHHhC-CcC--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 77777888777664 332 22221 1111 1 11 36788999999976543
No 145
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.12 E-value=3.9e+02 Score=22.88 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=35.1
Q ss_pred HHHHHHhHHcCCccE-EEecCCCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEE
Q 042524 152 WKAMEGLVDSGLVRA-IGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 152 ~~al~~L~~~Gkir~-iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via 217 (365)
++.++++++...+.- +++-..+.....+.+...+. +.+|++..........++.++++|+.+..
T Consensus 45 ~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga--dgv~vh~~~~~~~~~~~~~~~~~g~~~~~ 109 (210)
T TIGR01163 45 PPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA--DIITVHPEASEHIHRLLQLIKDLGAKAGI 109 (210)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC--CEEEEccCCchhHHHHHHHHHHcCCcEEE
Confidence 455555655433222 66666666554444444443 66666654333335677888888876533
No 146
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.97 E-value=6.8e+02 Score=24.35 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhH-HcCC---ccEEEecC--CCHHHHHHHHHHcC-C---CCcccccccCccCc-----h-----hHHHHH
Q 042524 148 LKKAWKAMEGLV-DSGL---VRAIGVSN--FGVSQIKELLKFAK-I---MPAVNQVELHPFWR-----Q-----DELVKF 207 (365)
Q Consensus 148 ~~~~~~al~~L~-~~Gk---ir~iGvS~--~~~~~l~~~~~~~~-~---~~~~~q~~~n~~~~-----~-----~~ll~~ 207 (365)
++++++++.+.. +.|+ |.|+=+.+ .+.+.+.++.+... . ...++-++||+... . ..+.+.
T Consensus 264 l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~ 343 (373)
T PRK14459 264 VDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRR 343 (373)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHH
Confidence 788888877776 4465 55665554 34555544444333 2 34678889998532 1 457778
Q ss_pred HHHcCcEEEEecCCCC
Q 042524 208 CQSKGIHVSAHTPLGV 223 (365)
Q Consensus 208 ~~~~gi~via~spla~ 223 (365)
.+++||.+..+...+.
T Consensus 344 L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 344 LRAAGVPCTVRDTRGQ 359 (373)
T ss_pred HHHCCCeEEeeCCCCc
Confidence 8899999999887775
No 147
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.95 E-value=3.1e+02 Score=26.47 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.1
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCEEeCCC
Q 042524 14 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAH 55 (365)
Q Consensus 14 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~ 55 (365)
+|+.|.+.+.+ .++.++..++++...+.||..|+...
T Consensus 7 TLRDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 7 TLRDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45777777643 34557788999999999999999753
No 148
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=2.2e+02 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKI 186 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 186 (365)
...++..|--.++.||+-++|+-|-....+-..++..+.
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl 45 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRL 45 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccc
Confidence 456777888888999999999999998888777776553
No 149
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.84 E-value=3e+02 Score=23.32 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHH
Q 042524 39 AVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSL 104 (365)
Q Consensus 39 ~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL 104 (365)
+-....+.|++.......-.++..|-++|+.. ..+.+++|+| .|......+...+++.+.+
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~----~~~~dlVItt-GG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRA----SERADLVITT-GGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH----HhCCCEEEEC-CCCCCCCCChHHHHHHHHh
Confidence 33444577998876544444466677888765 2477899888 4433333455666666554
No 150
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=23.83 E-value=7.2e+02 Score=24.65 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHHhHHcCC-ccEEEecCCCHHHHHHHHHHcCCCC-----cccccccCccCchhHHHHHHHHcCcEEEEecCCCC
Q 042524 152 WKAMEGLVDSGL-VRAIGVSNFGVSQIKELLKFAKIMP-----AVNQVELHPFWRQDELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 152 ~~al~~L~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~-----~~~q~~~n~~~~~~~ll~~~~~~gi~via~spla~ 223 (365)
....+.|+++|. ++++++.+-....+..+.+..+.+. +.+...-..+.+-+++...|++.||.+++=...+-
T Consensus 145 ~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQav 222 (428)
T KOG1549|consen 145 LDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV 222 (428)
T ss_pred hHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhc
Confidence 456666777775 7788877544444444443332211 22233333344457888888888887776665554
No 151
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.66 E-value=6.4e+02 Score=24.00 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEe
Q 042524 90 MNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGV 169 (365)
Q Consensus 90 ~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGv 169 (365)
.++.+.+. .+-+.|.+.|+++|.+-+.-.........+ .+. ....+.++.+.+.+ ...+...+
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g----~~~----------~~~~e~i~~~~~~~--~~~~~~~l 83 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSSFNYG----FGA----------HTDEEYIEAAAEVV--KQAKIAAL 83 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCccccCC----CCC----------CCHHHHHHHHHHhC--CCCEEEEE
Confidence 34555544 455559999999999875322111001000 110 00233333333222 23554443
Q ss_pred cC---CCHHHHHHHHHHcCCCCcccccccCc--cCchhHHHHHHHHcCcEEEEe
Q 042524 170 SN---FGVSQIKELLKFAKIMPAVNQVELHP--FWRQDELVKFCQSKGIHVSAH 218 (365)
Q Consensus 170 S~---~~~~~l~~~~~~~~~~~~~~q~~~n~--~~~~~~ll~~~~~~gi~via~ 218 (365)
.. .+...++.+.+. ++ +.+.+..+. .+.-.+.+++++++|..+...
T Consensus 84 l~pg~~~~~dl~~a~~~-gv--d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 84 LLPGIGTVDDLKMAYDA-GV--RVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred eccCcccHHHHHHHHHc-CC--CEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 32 245667666654 23 333333322 222267899999999877765
No 152
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=23.51 E-value=5.5e+02 Score=23.10 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=56.9
Q ss_pred cCcceeecccCChhHHHHHHHHHHHcCCCEEeCCCCcCC-----HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhH
Q 042524 21 IPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGN-----EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINK 95 (365)
Q Consensus 21 vs~lglG~~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~-----E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~ 95 (365)
+-.+.+-|.-+..++-..+.+.+++.|..|+-|+..+.. |.+ +.+++.+ ..+ +--|-...-.+.+.
T Consensus 127 ~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv--~lM~~~v-----g~~--vgvKaSGGIrt~ed 197 (228)
T COG0274 127 VLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV--KLMKETV-----GGR--VGVKASGGIRTAED 197 (228)
T ss_pred eEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH--HHHHHHh-----ccC--ceeeccCCcCCHHH
Confidence 345666777777778889999999999999999997753 322 3344331 112 33354444458889
Q ss_pred HHHHHHHHHHhhCCC
Q 042524 96 IENYVRVSLKNLGVS 110 (365)
Q Consensus 96 i~~~le~SL~rLg~d 110 (365)
....++.-..|+|+.
T Consensus 198 a~~~i~aga~RiGtS 212 (228)
T COG0274 198 AKAMIEAGATRIGTS 212 (228)
T ss_pred HHHHHHHhHHHhccc
Confidence 999999999999975
No 153
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.24 E-value=2.9e+02 Score=25.06 Aligned_cols=20 Identities=35% Similarity=0.786 Sum_probs=15.5
Q ss_pred hHHHHHHHHcCcEEEEecCCC
Q 042524 202 DELVKFCQSKGIHVSAHTPLG 222 (365)
Q Consensus 202 ~~ll~~~~~~gi~via~spla 222 (365)
.++.++|+++||.+++ +|+.
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd 78 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFD 78 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-S
T ss_pred HHHHHHHHHcCCEEEE-CCCC
Confidence 6899999999999887 6765
No 154
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.19 E-value=7.7e+02 Score=24.72 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=57.1
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPS 135 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (365)
.||.+.-|-+++.+..+. .+.+=++|.|-+-..- --+++..-+++.-+++| +.++.++.+...... .
T Consensus 100 VfGg~~kL~~~I~ei~~~-~~P~~I~V~tTC~~~l-IGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~-----~--- 166 (475)
T PRK14478 100 VFGGEKKLFKAIDEIIEK-YAPPAVFVYQTCVVAL-IGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNK-----N--- 166 (475)
T ss_pred eeCCHHHHHHHHHHHHHh-cCCCEEEEeCCChHHH-hccCHHHHHHHHHHhhC---CCEEEEECCCcccch-----h---
Confidence 478777777777665432 2455677877774321 11122222222223333 678888887661100 0
Q ss_pred CCChhhHHhhHHHHHHHHHHHH-hH--------HcCCccEEEecCCC--HHHHHHHHHHcCCC
Q 042524 136 KSGSERRQFLNRLKKAWKAMEG-LV--------DSGLVRAIGVSNFG--VSQIKELLKFAKIM 187 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~al~~-L~--------~~Gkir~iGvS~~~--~~~l~~~~~~~~~~ 187 (365)
.-...+++++-+ ++ ..+.|--||-.++. .+.++++++..++.
T Consensus 167 ----------~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~ 219 (475)
T PRK14478 167 ----------LGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIR 219 (475)
T ss_pred ----------hhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCe
Confidence 012333333322 22 24668888866644 45788888887753
No 155
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=23.19 E-value=4.6e+02 Score=26.18 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=59.8
Q ss_pred CcCCHHHHHHHHHHHhcCCCC-CCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCC--cccEEEeeCCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLK-REDVFLTSTLYCSMNSINKIENYVRVSLKNLGVS--YLDLYLMHWPECSASGFGDATD 132 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~-R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d--~iDl~~lH~p~~~~~~~~~~~~ 132 (365)
.||.++-|-++|++..+. .+ .+-++|.|-+-. +-|-..++...+++... -+.++.+|.|......
T Consensus 107 VfGg~~kL~~aI~~~~~~-~~~p~~I~V~tTC~~-----elIGDDi~~v~~~~~~~~~~~~vi~v~tpgf~g~s------ 174 (461)
T TIGR01860 107 VFGGEKQLEKSIHEAFDE-FPDIKRMIVYTTCPT-----ALIGDDIKAVAKKVQKELPDVDIFTVECPGFAGVS------ 174 (461)
T ss_pred eeCcHHHHHHHHHHHHHh-CCCCCEEEEEccCch-----hhhcCCHHHHHHHHHHhcCCCcEEEEeCCCcCCcc------
Confidence 477777788888766443 23 345788887642 23333444444444322 2689999998762100
Q ss_pred CCCCCChhhHHhhHHHHHHHHH-HHHh----HHcCCccEEEecCC--CHHHHHHHHHHcCCCC
Q 042524 133 PPSKSGSERRQFLNRLKKAWKA-MEGL----VDSGLVRAIGVSNF--GVSQIKELLKFAKIMP 188 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~a-l~~L----~~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~ 188 (365)
.... +....+..++. +..+ +..++|--||-.++ +.+.+.++++..++.+
T Consensus 175 ----~~~G---~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v 230 (461)
T TIGR01860 175 ----QSKG---HHVLNIGWINEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQV 230 (461)
T ss_pred ----cchH---HHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcE
Confidence 0000 00011111111 1111 23577888884443 3467888888777643
No 156
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=23.10 E-value=3.8e+02 Score=26.43 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHHHHHHhHHc------CCccEEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCC
Q 042524 151 AWKAMEGLVDS------GLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 151 ~~~al~~L~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spl 221 (365)
-++.+.+|++. ..=-..+-|.++.+.+.++++.... +++|+..+-. ..-.++..+|+.+||.++..+..
T Consensus 280 ~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 280 QIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 46666666655 3333445666778888888876544 6777776542 22378999999999999997665
Q ss_pred C
Q 042524 222 G 222 (365)
Q Consensus 222 a 222 (365)
.
T Consensus 358 ~ 358 (408)
T TIGR01502 358 N 358 (408)
T ss_pred C
Confidence 3
No 157
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=22.88 E-value=1.9e+02 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHcCCCCccc--ccccCccCch-----hHHHHHHHHcCcEEEEecCCCC
Q 042524 172 FGVSQIKELLKFAKIMPAVN--QVELHPFWRQ-----DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~--q~~~n~~~~~-----~~ll~~~~~~gi~via~spla~ 223 (365)
.++.+++.+.+.+++.+..+ -.+||.+..+ .++.++++.-|-.-+..-|+.-
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd 107 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND 107 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC
Confidence 45677777777776533222 2245665543 6799999999999999999986
No 158
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.82 E-value=6e+02 Score=23.35 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHcCCCEEeC----------CCCcCC-HHHHHHHHHHHhcCCCCCC-cEEEEeecCCCCCChhHHHHHH
Q 042524 33 GELCVEAVKTALSVGYRNIDC----------AHLYGN-EIEVGEALDEAFKGSLKRE-DVFLTSTLYCSMNSINKIENYV 100 (365)
Q Consensus 33 ~~~~~~~l~~a~~~Gin~~DT----------A~~Yg~-E~~lG~al~~~~~~~~~R~-~v~I~tK~~~~~~~~~~i~~~l 100 (365)
.++..++.+.+.+.|+..||. ...|+. .+.+-+.++.. ++. ++-|..|+.+.. +.+ ..+
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v-----r~~~~~Pv~vKl~~~~---~~~-~~~ 171 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV-----KKATDVPVIVKLTPNV---TDI-VEI 171 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH-----HhccCCCEEEEeCCCc---hhH-HHH
Confidence 466777888888889998886 123443 55555555543 111 567888986432 122 233
Q ss_pred HHHHHhhCCCcccEEE------eeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCC-C
Q 042524 101 RVSLKNLGVSYLDLYL------MHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF-G 173 (365)
Q Consensus 101 e~SL~rLg~d~iDl~~------lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~-~ 173 (365)
-+.+...|.|.|++.- +|.-... ..... ...+..+. ....-.++.+.++++.=.+--||.... +
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~~~~~-~~~~~--~~gg~sg~------~~~~~~~~~i~~i~~~~~ipii~~GGI~~ 242 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDIETRK-PILGN--VTGGLSGP------AIKPIALRMVYQVYKAVEIPIIGVGGIAS 242 (296)
T ss_pred HHHHHHcCCCEEEEECCCcccccccccCc-eeecC--CcceecCc------ccchHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 3457778887776541 1110000 00000 00000000 001124566667776656888888885 6
Q ss_pred HHHHHHHHHHcCCCCcccccccCccC-ch------hHHHHHHHHcCc
Q 042524 174 VSQIKELLKFAKIMPAVNQVELHPFW-RQ------DELVKFCQSKGI 213 (365)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~q~~~n~~~-~~------~~ll~~~~~~gi 213 (365)
++.+.+++.. +. +.+|+-=.++. +. .++-++.+++|.
T Consensus 243 ~~da~~~l~~-GA--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 243 GEDALEFLMA-GA--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHHc-CC--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 7888888874 33 55555322221 11 456677777764
No 159
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=22.74 E-value=5.1e+02 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.245 Sum_probs=16.7
Q ss_pred hHHHHHHHHcCcEEEEecC
Q 042524 202 DELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 202 ~~ll~~~~~~gi~via~sp 220 (365)
.++++.++++|+.+.+|..
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5799999999999999954
No 160
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.68 E-value=5.4e+02 Score=25.72 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCcCCHHHHHHHHHHHhcCCCC-CCcEEEEeecCCCCCChhHHHHHHHHHHHhhC---CC--cccEEEeeCCCCCCCCCC
Q 042524 55 HLYGNEIEVGEALDEAFKGSLK-REDVFLTSTLYCSMNSINKIENYVRVSLKNLG---VS--YLDLYLMHWPECSASGFG 128 (365)
Q Consensus 55 ~~Yg~E~~lG~al~~~~~~~~~-R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg---~d--~iDl~~lH~p~~~~~~~~ 128 (365)
-.||.+.-|-+++++..++ .+ .+=++|.|-+...- --+++..-+++.-++++ .. .+.++.+|.|+....
T Consensus 72 ~VfGg~~~L~~ai~~~~~~-~~~p~~i~v~ttc~~ei-iGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs--- 146 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTR-YPDVKVVPIITTCSTEI-IGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS--- 146 (461)
T ss_pred eEECcHHHHHHHHHHHHHh-cCCCCEEEEECCchHHh-hhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc---
Confidence 3478877777888765432 22 34456777764321 11233333333333331 11 367899998887211
Q ss_pred CCCCCCCCCChhhHHhhHHHHHHHHHHH-HhH----HcCCccEEEecC--CCHHHHHHHHHHcCCC
Q 042524 129 DATDPPSKSGSERRQFLNRLKKAWKAME-GLV----DSGLVRAIGVSN--FGVSQIKELLKFAKIM 187 (365)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~al~-~L~----~~Gkir~iGvS~--~~~~~l~~~~~~~~~~ 187 (365)
.... .+.+++++- .+. .+++|--||-.. -+.+.++++++..++.
T Consensus 147 -----------~~~G----y~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~ 197 (461)
T TIGR02931 147 -----------MITG----YDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIE 197 (461)
T ss_pred -----------HHHH----HHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCc
Confidence 0011 233333333 222 246788888543 2456788888877764
No 161
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=22.66 E-value=6.3e+02 Score=23.56 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=39.1
Q ss_pred ccEEEec-----CCCHHHHHHHHHHc-----CCCCcccccccCccCc---h---hHHHHHHHHcCcEEEEecCCCC
Q 042524 164 VRAIGVS-----NFGVSQIKELLKFA-----KIMPAVNQVELHPFWR---Q---DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 164 ir~iGvS-----~~~~~~l~~~~~~~-----~~~~~~~q~~~n~~~~---~---~~ll~~~~~~gi~via~spla~ 223 (365)
+..+-+. ..+.+.+++.++.. +.+..++-.++|+.-. . .+++++|+++|+-++.=..++.
T Consensus 117 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~ 192 (363)
T PF00155_consen 117 VIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSD 192 (363)
T ss_dssp EEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred eeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceec
Confidence 5555543 56788898888764 2223444445555322 1 5678889999999998777664
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.65 E-value=2.5e+02 Score=24.70 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHHHhHHcCCccEEEecC-CCHHHHHHHHHHcCCCCcccccccCccCchhHHHHHHHHcCcEEEE
Q 042524 151 AWKAMEGLVDSGLVRAIGVSN-FGVSQIKELLKFAKIMPAVNQVELHPFWRQDELVKFCQSKGIHVSA 217 (365)
Q Consensus 151 ~~~al~~L~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ll~~~~~~gi~via 217 (365)
.++.+++++++..=-.||..+ .+.++++++++... |+-.++ .-+.+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECC-CCCHHHHHHHHHcCCCEeC
Confidence 345555665553334688777 46788888877543 222233 2347999999999997765
No 163
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=22.63 E-value=4.2e+02 Score=26.91 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhCCCcccEEE
Q 042524 95 KIENYVRVSLKNLGVSYLDLYL 116 (365)
Q Consensus 95 ~i~~~le~SL~rLg~d~iDl~~ 116 (365)
.-+..+-+.|.++|+|+|.+-+
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~ 127 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF 127 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC
Confidence 3445666779999998888754
No 164
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.61 E-value=3.7e+02 Score=25.79 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCEEeCCCCcCC-HHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCCCcccEEE
Q 042524 38 EAVKTALSVGYRNIDCAHLYGN-EIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYL 116 (365)
Q Consensus 38 ~~l~~a~~~Gin~~DTA~~Yg~-E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~d~iDl~~ 116 (365)
+..+..-+.||+|+-++-.-.| ..+|+..|++ +.-+.+.|---+.. +.. .+-+-++++|+=|||-..
T Consensus 51 k~~k~~~~~girfV~e~it~~Nyk~vL~pll~~-----~~gqgf~vnLSvd~---~s~----Dlmr~crk~~vLYidTvV 118 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNYKDVLKPLLKG-----VGGQGFCVNLSVDT---SSL----DLMRLCRKHGVLYIDTVV 118 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhHHHHHHHHhhc-----CCCceEEEEeEecc---chh----HHHHHHHHcCeEEEeeee
Confidence 6677778999999987766555 6677777774 34555555444321 222 344567888988999888
Q ss_pred eeCCCC
Q 042524 117 MHWPEC 122 (365)
Q Consensus 117 lH~p~~ 122 (365)
=-|+..
T Consensus 119 EpW~gf 124 (481)
T COG5310 119 EPWLGF 124 (481)
T ss_pred cccccc
Confidence 777754
No 165
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=22.47 E-value=2.8e+02 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHHcCCccEEEe
Q 042524 146 NRLKKAWKAMEGLVDSGLVRAIGV 169 (365)
Q Consensus 146 ~~~~~~~~al~~L~~~Gkir~iGv 169 (365)
.+.+++++.++.|++.| ++.|-+
T Consensus 167 r~~e~I~~Ei~~l~~~g-~~ei~l 189 (414)
T TIGR01579 167 VPMEAILKQVKILVAKG-YKEIVL 189 (414)
T ss_pred CCHHHHHHHHHHHHHCC-CceEEE
Confidence 44889999999999987 566654
No 166
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=22.44 E-value=5.3e+02 Score=22.60 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=44.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC
Q 042524 29 WQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLG 108 (365)
Q Consensus 29 ~~~~~~~~~~~l~~a~~~Gin~~DTA~~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg 108 (365)
+..++++-.+++..+++.|+.++|.=-... ...+....... ..+.+++++.--+....+.+.+.+.+++.. .+|
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~-~~~~~~~~~~~----~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLF-PDDLKSRLAAR----KGGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCC-HHHHHHHHHHH----HTTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccc-hhHHHHHHHHh----hCCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 445567788999999999999999843322 22222222211 146677777663333223344555554444 777
Q ss_pred CCcccEEE
Q 042524 109 VSYLDLYL 116 (365)
Q Consensus 109 ~d~iDl~~ 116 (365)
.|.+=+..
T Consensus 144 adivKia~ 151 (224)
T PF01487_consen 144 ADIVKIAV 151 (224)
T ss_dssp -SEEEEEE
T ss_pred CCeEEEEe
Confidence 65444443
No 167
>TIGR00035 asp_race aspartate racemase.
Probab=22.30 E-value=2.4e+02 Score=25.03 Aligned_cols=79 Identities=9% Similarity=-0.092 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCC
Q 042524 93 INKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF 172 (365)
Q Consensus 93 ~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~ 172 (365)
.+.+++=++.+=.+.+-++++++.+++|+....... .. ...+......+.+.++.|.+.| +..|-++..
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~----~~------~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCN 84 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAY----IL------GRGEDRPRPILIDIAVKLENAG-ADFIIMPCN 84 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHH----Hh------cCCcchHHHHHHHHHHHHHHcC-CCEEEECCc
Confidence 345555566666678899999999999865110000 00 0001112455667777777755 799999888
Q ss_pred CHHH-HHHHHH
Q 042524 173 GVSQ-IKELLK 182 (365)
Q Consensus 173 ~~~~-l~~~~~ 182 (365)
+... +.++.+
T Consensus 85 Tah~~~~~l~~ 95 (229)
T TIGR00035 85 TAHKFAEDIQK 95 (229)
T ss_pred cHHHHHHHHHH
Confidence 7665 444433
No 168
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=22.24 E-value=1.2e+02 Score=23.40 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=35.1
Q ss_pred cCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecC
Q 042524 170 SNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 170 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~sp 220 (365)
|.++...+.++++...+ +++|+...-. ..-..+.++|+++|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 55777888888886544 6677764332 2236899999999999999986
No 169
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.15 E-value=7.1e+02 Score=23.93 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=43.2
Q ss_pred CCCCCChhHHHHHHHHHHHhhCCCcccEEEeeCCCCC-CCCCCC--CCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCC
Q 042524 87 YCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECS-ASGFGD--ATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGL 163 (365)
Q Consensus 87 ~~~~~~~~~i~~~le~SL~rLg~d~iDl~~lH~p~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gk 163 (365)
|.+..+.+.+.+.++..+ .|+.++|.+|.+.--... ...... ....| ..+ ...+-...+.+.|.+.|.
T Consensus 163 GlPgqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~L~~~Gy 233 (370)
T PRK06294 163 GLPTQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIA---DEE-----ILAEMSLAAEELLTSQGF 233 (370)
T ss_pred CCCCCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCc---CHH-----HHHHHHHHHHHHHHHcCC
Confidence 334457888888888766 489999999988732210 000000 00011 000 001122345677888887
Q ss_pred ccEEEecCCCH
Q 042524 164 VRAIGVSNFGV 174 (365)
Q Consensus 164 ir~iGvS~~~~ 174 (365)
.++++|||..
T Consensus 234 -~~yeis~fa~ 243 (370)
T PRK06294 234 -TRYELASYAK 243 (370)
T ss_pred -CeeeeeeeeC
Confidence 5689998863
No 170
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=22.02 E-value=5.6e+02 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=16.4
Q ss_pred hHHHHHHHHcCcEEEEecC
Q 042524 202 DELVKFCQSKGIHVSAHTP 220 (365)
Q Consensus 202 ~~ll~~~~~~gi~via~sp 220 (365)
.++++.|+++|+.+.+|..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6899999999999999853
No 171
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=22.02 E-value=1.4e+02 Score=26.77 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch--hHHHHHHHHcCcEEEEecCCCC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ--DELVKFCQSKGIHVSAHTPLGV 223 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~--~~ll~~~~~~gi~via~spla~ 223 (365)
+++..+++..|+-+|.+--==.|.+....++.++...+.+ .|.+++.. .+++...-+.|..++.-+.-+.
T Consensus 75 ve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 75 VEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred HHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 6777788888873333211113445555677777666542 36666654 6788888888888887777776
No 172
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=21.92 E-value=1.5e+02 Score=27.98 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHcCCccEE
Q 042524 148 LKKAWKAMEGLVDSGLVRAI 167 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~i 167 (365)
..+.++.|..++++|||+++
T Consensus 291 ~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 291 YPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred hHHHHHHHHHHHhcCceEEe
Confidence 67789999999999999987
No 173
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.77 E-value=7.5e+02 Score=24.10 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=46.7
Q ss_pred HHHHHHHhHHcCCccEEEecCCCHHHHHHHHHHcCCCCcccccccCccCch---hHHHHHHHHcCcEEEEecCCCCC
Q 042524 151 AWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQ---DELVKFCQSKGIHVSAHTPLGVP 224 (365)
Q Consensus 151 ~~~al~~L~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~---~~ll~~~~~~gi~via~spla~G 224 (365)
++..++.+.+.+.++.+-+...+.+.+++++.. ..+..++..+-|+.-.- .++.+.|+++|+-++.=..++.+
T Consensus 112 t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 112 SWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 444455554555566666665677777776642 23334445555554322 68999999999999998887753
No 174
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.15 E-value=1.2e+02 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHcCCccEEEecCC
Q 042524 148 LKKAWKAMEGLVDSGLVRAIGVSNF 172 (365)
Q Consensus 148 ~~~~~~al~~L~~~Gkir~iGvS~~ 172 (365)
.+.+-..|+.|++.|+|+.+...+.
T Consensus 28 ~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHHHHHHCCcEEEecCCCC
Confidence 4556678899999999999987654
No 175
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=21.09 E-value=3.2e+02 Score=26.68 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=46.8
Q ss_pred HHHHHHhHHcCCcc-EEEecCCCHHHHHHHHHHcCCCCcccccccCcc---CchhHHHHHHHHcCcEEEEecCC
Q 042524 152 WKAMEGLVDSGLVR-AIGVSNFGVSQIKELLKFAKIMPAVNQVELHPF---WRQDELVKFCQSKGIHVSAHTPL 221 (365)
Q Consensus 152 ~~al~~L~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~---~~~~~ll~~~~~~gi~via~spl 221 (365)
++.+.+|++...+- ..|-|-++..++.++++.... +++|...... ..-.++...|+++|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av--dil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV--DIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC--cEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56667777766554 556666777777777775543 6666665432 22368999999999999988764
No 176
>PLN02363 phosphoribosylanthranilate isomerase
Probab=20.91 E-value=2.8e+02 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=24.0
Q ss_pred CccEEEec-CCCHHHHHHHHHHcCCCCccccccc
Q 042524 163 LVRAIGVS-NFGVSQIKELLKFAKIMPAVNQVEL 195 (365)
Q Consensus 163 kir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~ 195 (365)
.++.+||. +-+++.+.++++..++ +++|+.-
T Consensus 99 ~~~~VgVfv~~~~~~I~~~~~~~~l--d~VQLHG 130 (256)
T PLN02363 99 GAKPVGVFVDDDANTILRAADSSDL--ELVQLHG 130 (256)
T ss_pred CccEEEEEeCCCHHHHHHHHHhcCC--CEEEECC
Confidence 46789985 7788888888876655 8889874
No 177
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.78 E-value=7.6e+02 Score=24.30 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred CcCCHHHHHHHHHHHhcCCCCCCcEEEEeecCCCCCChhHHHHHHHHHHHhhCC----CcccEEEeeCCCCCCCCCCCCC
Q 042524 56 LYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGV----SYLDLYLMHWPECSASGFGDAT 131 (365)
Q Consensus 56 ~Yg~E~~lG~al~~~~~~~~~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg~----d~iDl~~lH~p~~~~~~~~~~~ 131 (365)
.||.++-|-+++++..+. .+.+=++|.|-+. ++-|-..++...+++.- ..+.++.++.|.....
T Consensus 65 VfGg~~kL~~aI~~~~~~-~~P~~I~V~ttc~-----~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~------ 132 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQ-YNPEVIGIATTCL-----SETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGT------ 132 (429)
T ss_pred EECcHHHHHHHHHHHHHh-cCCCEEEEeCCch-----HHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCccc------
Confidence 477777777777765432 2345567777763 33444445555554442 2467888888876110
Q ss_pred CCCCCCChhhHHhhHHHHHHHHHHHH-h----HHcCCccEEEecC--CCHHHHHHHHHHcCCCC
Q 042524 132 DPPSKSGSERRQFLNRLKKAWKAMEG-L----VDSGLVRAIGVSN--FGVSQIKELLKFAKIMP 188 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~al~~-L----~~~Gkir~iGvS~--~~~~~l~~~~~~~~~~~ 188 (365)
.. .-.+.+++++-+ + ++.++|--||-.+ .+.+.++++++..++.+
T Consensus 133 --------~~----~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 133 --------HV----EGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred --------HH----HHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 00 112333333332 2 2356788887433 34567888888777643
No 178
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=20.37 E-value=4.4e+02 Score=20.87 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=33.4
Q ss_pred CCCcEEEEeecCCCCCChhHHHHHHHHHHHhhC--CCcccEEEeeCCCC
Q 042524 76 KREDVFLTSTLYCSMNSINKIENYVRVSLKNLG--VSYLDLYLMHWPEC 122 (365)
Q Consensus 76 ~R~~v~I~tK~~~~~~~~~~i~~~le~SL~rLg--~d~iDl~~lH~p~~ 122 (365)
+|=-+.|+-|++.....++.|++.+.+..+... ....|++++..+..
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~ 92 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKF 92 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCc
Confidence 566677777866544567788888888876544 23569999998765
No 179
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=20.23 E-value=1.5e+02 Score=22.04 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhCCCcccEEEeeCCCCCCCCCCCCCCCCCCCChhhHHhhHHHHHHHHHHHHhHHcCCccEEEecCCCHH
Q 042524 96 IENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVS 175 (365)
Q Consensus 96 i~~~le~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~L~~~Gkir~iGvS~~~~~ 175 (365)
+-..=+...+.||....||..|..-.+ . ...+.+.+.|...++.. | ..-+..
T Consensus 12 LG~~W~~Lar~Lgls~~~I~~i~~~~p-----------~-----------~l~eQv~~mL~~W~~r~-----G-~~ATv~ 63 (83)
T cd08319 12 LGPEWEQVLLDLGLSQTDIYRCKENHP-----------H-----------NVQSQIVEALVKWRQRF-----G-KKATVQ 63 (83)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHhCC-----------C-----------CHHHHHHHHHHHHHHhc-----C-CCCcHH
Confidence 334445567889999889888865222 0 01467788888888853 2 456688
Q ss_pred HHHHHHHHcCCCCccccc
Q 042524 176 QIKELLKFAKIMPAVNQV 193 (365)
Q Consensus 176 ~l~~~~~~~~~~~~~~q~ 193 (365)
.+.+++..+++.+++.|+
T Consensus 64 ~L~~aL~~~~~~~~~~~~ 81 (83)
T cd08319 64 SLIQSLKAVEVDPSVLQF 81 (83)
T ss_pred HHHHHHHHcCCCHHHHHh
Confidence 999999988887776654
Done!