BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042525
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
           Methyltransferase (Samt)
          Length = 359

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 1   TQEFRIFFNDHTSNDFNTLFKSLPPERNY----FAASVPGAFYGALISQGIIASVNSSHS 56
           + E++IF ND   NDFN +F+SLP E +     F   VPG+FYG L  +  +  ++SS+S
Sbjct: 89  SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYS 148

Query: 57  VRWLSSVPNEVE 68
           + WLS VP  +E
Sbjct: 149 LMWLSQVPIGIE 160


>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
           Methyltransferase
 pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
           Methyltransferase
          Length = 374

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 15/80 (18%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP---------------ERNYFAASVPGAFYGALISQGI 47
           EF  FF+D  SNDFNTLF+ LPP                R+YF A VPG+FY  L     
Sbjct: 91  EFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART 150

Query: 48  IASVNSSHSVRWLSSVPNEV 67
           I   +S+ S+ WLS VP  V
Sbjct: 151 IDFFHSAFSLHWLSQVPESV 170


>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
 pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
          Length = 372

 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 12/73 (16%)

Query: 5   RIFFNDHTSNDFNTLFKSLPP-----ER-------NYFAASVPGAFYGALISQGIIASVN 52
           +IF ND   NDFN++FK LP      E+       +    ++PG+FY  L  +  +  ++
Sbjct: 96  QIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLH 155

Query: 53  SSHSVRWLSSVPN 65
           S + ++WLS VP+
Sbjct: 156 SCYCLQWLSQVPS 168


>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
          Length = 384

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 12/74 (16%)

Query: 4   FRIFFNDHTSNDFNTLFKSLPP-ERNY-----------FAASVPGAFYGALISQGIIASV 51
            +IF ND   NDFN++FK LP   RN               ++PG+FY  L  +  +  +
Sbjct: 94  IQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFL 153

Query: 52  NSSHSVRWLSSVPN 65
           +S + + WLS VP+
Sbjct: 154 HSCYCLHWLSQVPS 167


>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
           Angstrom Resolution
 pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
           Angstrom Resolution
          Length = 241

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 9   NDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASV 51
           ND T  + N +  +L P RN+F     G F GA   +G++ +V
Sbjct: 172 NDLTVKEGNRVAVALLPPRNFFGIVSEGMFLGA--GEGVLKNV 212


>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
           Tuberculosis
 pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
           Tuberculosis
          Length = 499

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 27  RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPN 65
           +N  AASV     G L++     +V  SH++  + SVPN
Sbjct: 242 KNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPN 280


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,053,512
Number of Sequences: 62578
Number of extensions: 60402
Number of successful extensions: 139
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 6
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)