Your job contains 1 sequence.
>042526
MFHTNCATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSI
LKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP
KGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR
KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKLNSKKRKRSSANEEDSGD
GDGDEDGRGVQKEEERNLKNEKGKKKKKKKKGKKIKTVEESVAG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042526
(284 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086775 - symbol:AT3G16840 species:3702 "Arabi... 408 3.5e-37 1
DICTYBASE|DDB_G0281841 - symbol:ddx24 "DEAD/DEAH box heli... 180 7.5e-17 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 212 3.5e-16 1
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 162 6.2e-13 2
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 177 2.1e-12 1
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 170 7.5e-12 1
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 170 7.5e-12 1
CGD|CAL0000625 - symbol:SPB4 species:5476 "Candida albica... 165 2.9e-11 1
WB|WBGene00010280 - symbol:F58G11.2a species:6239 "Caenor... 162 1.1e-10 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 138 2.4e-09 2
UNIPROTKB|G5EHR3 - symbol:MGCH7_ch7g509 "ATP-dependent RN... 152 2.8e-09 1
UNIPROTKB|E7EX41 - symbol:DDX55 "ATP-dependent RNA helica... 138 3.6e-09 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 151 5.3e-09 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 135 5.6e-09 2
WB|WBGene00002244 - symbol:laf-1 species:6239 "Caenorhabd... 151 6.7e-09 1
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 148 1.0e-08 1
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 148 1.0e-08 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 128 1.2e-08 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 136 1.3e-08 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 147 1.4e-08 1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 147 1.4e-08 1
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 149 1.5e-08 1
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 147 1.6e-08 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 133 1.9e-08 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 148 2.4e-08 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 127 2.6e-08 2
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 147 2.6e-08 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 145 2.7e-08 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 132 2.8e-08 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 129 2.9e-08 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 129 3.6e-08 2
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 145 3.7e-08 1
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 145 3.7e-08 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 144 3.9e-08 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 144 3.9e-08 1
UNIPROTKB|H0YI52 - symbol:DDX23 "Probable ATP-dependent R... 126 3.9e-08 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 132 5.0e-08 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 144 5.2e-08 1
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 145 5.3e-08 1
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 145 5.4e-08 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 118 5.6e-08 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 118 5.6e-08 2
UNIPROTKB|G4MSR4 - symbol:MGG_07099 "Uncharacterized prot... 145 6.9e-08 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 122 7.4e-08 2
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 144 7.4e-08 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 142 9.0e-08 1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 131 1.1e-07 2
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 145 1.1e-07 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 141 1.3e-07 1
UNIPROTKB|A6H7B6 - symbol:DDX24 "DDX24 protein" species:9... 109 1.6e-07 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 126 1.9e-07 2
RGD|727929 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box pol... 114 2.0e-07 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 122 2.5e-07 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 118 2.6e-07 2
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 143 2.6e-07 1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 120 2.9e-07 2
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 132 3.2e-07 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 138 3.2e-07 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 129 3.3e-07 2
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 140 3.6e-07 1
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 140 3.6e-07 1
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 117 3.6e-07 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 118 4.0e-07 2
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 140 4.1e-07 1
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 140 4.3e-07 1
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 140 4.3e-07 1
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 140 4.3e-07 1
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 140 4.3e-07 1
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 139 4.3e-07 1
MGI|MGI:1351337 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) bo... 112 4.5e-07 2
UNIPROTKB|F5H5U2 - symbol:DDX55 "ATP-dependent RNA helica... 138 4.6e-07 1
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 138 4.9e-07 1
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 138 5.0e-07 1
CGD|CAL0005900 - symbol:MAK5 species:5476 "Candida albica... 139 5.4e-07 1
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 123 5.5e-07 2
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 137 5.6e-07 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 123 5.7e-07 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 122 6.1e-07 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 122 6.4e-07 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 122 7.0e-07 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 135 7.3e-07 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 135 7.3e-07 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 135 7.5e-07 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 135 7.5e-07 1
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 138 7.7e-07 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 134 8.7e-07 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 134 8.7e-07 1
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 136 9.3e-07 1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 120 9.3e-07 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 120 9.9e-07 2
ASPGD|ASPL0000056064 - symbol:AN0204 species:162425 "Emer... 137 9.9e-07 1
UNIPROTKB|G3V529 - symbol:DDX24 "ATP-dependent RNA helica... 112 1.0e-06 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 125 1.0e-06 2
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 137 1.0e-06 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 136 1.1e-06 1
UNIPROTKB|Q9GZR7 - symbol:DDX24 "ATP-dependent RNA helica... 112 1.2e-06 2
UNIPROTKB|D6RJA6 - symbol:DDX46 "Probable ATP-dependent R... 134 1.2e-06 1
SGD|S000004266 - symbol:DBP9 "DEAD-box protein required f... 135 1.3e-06 1
POMBASE|SPCC1494.06c - symbol:SPCC1494.06c "ATP-dependent... 135 1.3e-06 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 134 1.3e-06 1
WARNING: Descriptions of 302 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 408 (148.7 bits), Expect = 3.5e-37, P = 3.5e-37
Identities = 88/143 (61%), Positives = 100/143 (69%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD EE V E EI EF AW+ +RLHPLLMKSIY+L FKE T I KA A+Q KDVI
Sbjct: 173 DDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVI 232
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAAET SGKT AFGLP LQRLL+EREK K+ KGEEA+KYA G+LRALII PTRELA
Sbjct: 233 GAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELA 292
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
LQV + K+ S+ + G
Sbjct: 293 LQVTEHLENAAKNLSVKVVPIVG 315
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 180 (68.4 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q+ + E + + WN L PL++K + LGF + T I + IP DVIGAA
Sbjct: 280 QKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIGAA 339
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAE 116
+T SGKT AFG+P +QR+L+ K + +E K + +
Sbjct: 340 QTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQ 376
Score = 66 (28.3 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 109 EEKGEEAEKYAPKGH--LRALIINPTRELALQVL-----MVASPSLKSNSLTLAMAA 158
EE+ EE E+ K + L +L+I PTRELA+QV +++ +LK S+ MA+
Sbjct: 388 EEEEEEEEEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMAS 444
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 212 (79.7 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 52/147 (35%), Positives = 78/147 (53%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPL-LMKSIYKLGFKESTSILKARIPALAHQR 72
NG ++ EA T+ AW + P ++++I ++GF E T I A +PA R
Sbjct: 134 NGDTGKPKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDR 193
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
+DV+GAAET SGKT AFG+P + RLLE + + ++ E E P RALI+ PT
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARLLESSDDS-----QETESTEVRGP----RALIVAPT 244
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAG 159
REL +Q++ + + + L G
Sbjct: 245 RELVIQIMKHINALISTTQLIATSIVG 271
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 162 (62.1 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 17 DDAQEELV----NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
D+ ELV EAE + AWN L + +++++ + GFK T I +PA H +
Sbjct: 197 DEEAPELVPISTGEAE---DMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 253
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREK-----AAKMLEEKGEEAEKYAPKGHL 124
KD++GAAET SGKT AFG+P L ++E +++ K + KG++ E A + L
Sbjct: 254 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHEL 310
Score = 45 (20.9 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 185 DEKLDSL-KWNPLSQPKTTTLLPSSLALMNLTE 216
D+K++SL + +SQPK + S LTE
Sbjct: 491 DQKIESLIEELGISQPKIVDITSSQQTAQTLTE 523
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 177 (67.4 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 53/118 (44%), Positives = 69/118 (58%)
Query: 23 LVNEAEIS-TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAET 81
L +EA+ + AW L L P + S+ KL F TS+ K+ IP + DVIG A T
Sbjct: 185 LEDEADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGH-DVIGKAST 243
Query: 82 ESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFGLP L+ LE RE+ K ++ + EE EK P ALI++PTRELA Q+
Sbjct: 244 GSGKTLAFGLPILEHYLE-RERR-KTIDSE-EEKEKI-PI----ALILSPTRELAHQL 293
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 170 (64.9 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 48/113 (42%), Positives = 65/113 (57%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNE ++ L+ I +LG++E TS+ +A IP LA +++DV+G AET SGKT AF +P L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIP-LALKKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
+L E K E+ E P G LI+ PTRELALQ+ A K
Sbjct: 229 YILSIDENYLKY-EKISNE-----PVG----LILAPTRELALQITKEAEKFCK 271
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 170 (64.9 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 48/113 (42%), Positives = 65/113 (57%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNE ++ L+ I +LG++E TS+ +A IP LA +++DV+G AET SGKT AF +P L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIP-LALKKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
+L E K E+ E P G LI+ PTRELALQ+ A K
Sbjct: 229 YILSIDENYLKY-EKISNE-----PVG----LILAPTRELALQITKEAEKFCK 271
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 30 STEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+TE AW LR LHP + ++I +G+ T + + IP L+ KDV+ A T SGKT
Sbjct: 4 NTESLAWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
+F +P LQ++ + K + G+ E +GH+ +++++PTRELA Q+ V + L
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQSVFNQVL 117
Query: 148 K 148
+
Sbjct: 118 Q 118
>WB|WBGene00010280 [details] [associations]
symbol:F58G11.2a species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:Z81094 GeneID:179855
KEGG:cel:CELE_F58G11.2 CTD:179855 RefSeq:NP_001256533.1
ProteinModelPortal:P90897 SMR:P90897 STRING:P90897 PaxDb:P90897
EnsemblMetazoa:F58G11.2a UCSC:F58G11.2 WormBase:F58G11.2a
InParanoid:P90897 OMA:HGRPDDR NextBio:907138 Uniprot:P90897
Length = 959
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 45/125 (36%), Positives = 67/125 (53%)
Query: 15 GPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
G D A E + AE +W LHP +++++ ++ + +I A IP + D
Sbjct: 363 GQDRAVE--IRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGH-D 419
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
V+G AET +GKT AFGLP + ++L +M EE +A + G L ALI+ PTRE
Sbjct: 420 VLGQAETSAGKTAAFGLPIIDKIL-------RMDEETRNKARQ--DDGPL-ALILAPTRE 469
Query: 135 LALQV 139
LA Q+
Sbjct: 470 LAAQI 474
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 138 (53.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ E + EL L L+K++ KLGF + T I IP LA KD++ +A T SGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIP-LALNGKDILASASTGSGKTAA 243
Query: 89 FGLPALQRLL--EEREKAAKML 108
F LP L+RLL + +A ++L
Sbjct: 244 FLLPVLERLLFRDSEYRAIRVL 265
Score = 60 (26.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+R LI+ PTRELALQ V + +++T + G
Sbjct: 262 IRVLILLPTRELALQCQSVMENLAQFSNITSCLIVG 297
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 152 (58.6 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
LHP ++K++ G+K T I IPA+ H+ DVIG A+T SGKT AF +P + +L+ +
Sbjct: 129 LHPAMLKNVDLCGYKVPTPIQAYCIPAI-HKGHDVIGIAQTGSGKTAAFLIPVINKLMGK 187
Query: 101 REKAAKMLEEKGE-EAEKYAP-KGHLRALIINPTRELALQ 138
+K A E + + P + +I+ PTRELA+Q
Sbjct: 188 AKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQ 227
>UNIPROTKB|E7EX41 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC055713 EMBL:AC117503 HGNC:HGNC:20085 ChiTaRS:DDX55
IPI:IPI01018972 ProteinModelPortal:E7EX41 SMR:E7EX41
Ensembl:ENST00000354291 ArrayExpress:E7EX41 Bgee:E7EX41
Uniprot:E7EX41
Length = 191
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 44/112 (39%), Positives = 58/112 (51%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A+II PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--SQVG-------------AIIITPTRELAIQIDEVLS 103
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 151 (58.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 52/149 (34%), Positives = 78/149 (52%)
Query: 14 NGPDDAQEELVNEAE--ISTEFDAWNELRLHPLLMKSIYKLGFKESTSI-LKARIPALAH 70
N +D V+E E IS E ++ L + KSI ++GFK+ T I K+ +P L
Sbjct: 97 NENNDNNTGNVSEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLL-- 154
Query: 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130
+ KD++GAA T SGKT AF +PA++ L++ K P+ +II+
Sbjct: 155 EGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFK----------------PRNGTGVIIIS 198
Query: 131 PTRELALQVLMVASPSLKSNSLTLAMAAG 159
PTRELALQ+ VA +K ++ T + G
Sbjct: 199 PTRELALQIYGVARELMKYHTQTHGIVIG 227
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 135 (52.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RL 97
++
Sbjct: 63 KV 64
Score = 55 (24.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 124 LRALIINPTRELALQV 139
++AL++ PTRELA+QV
Sbjct: 71 VQALVVAPTRELAIQV 86
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 151 (58.2 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 44/146 (30%), Positives = 75/146 (51%)
Query: 18 DAQEELVNEA---EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
D EE+ EA ++ +++L LH + ++I G+ T + K IPAL R D
Sbjct: 212 DKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGR-D 270
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAA-KMLEEKGEEAEKYAPKGHLRALIINPTR 133
++ A+T SGKT AF +P + +L++ A + + G ++Y P AL+++PTR
Sbjct: 271 LMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQY-PS----ALVLSPTR 325
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
EL+LQ+ + +T A+ G
Sbjct: 326 ELSLQIFNESRKFAYRTPITSALLYG 351
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 45/123 (36%), Positives = 63/123 (51%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
+L L P+L+++I ++GF T + IP A +DV+ +A T +GKT AF +PALQ L
Sbjct: 7 DLELDPILLEAIEEMGFSRPTQVQAEAIPQ-ALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 98 LE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAM 156
L+ R KA G R LI+ PTRELA+QV A K+ L +
Sbjct: 66 LDFPRRKA-----------------GPARILILTPTRELAMQVAEQAQALAKNTRLNIFT 108
Query: 157 AAG 159
G
Sbjct: 109 ITG 111
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 45/123 (36%), Positives = 63/123 (51%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
+L L P+L+++I ++GF T + IP A +DV+ +A T +GKT AF +PALQ L
Sbjct: 7 DLELDPILLEAIEEMGFSRPTQVQAEAIPQ-ALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 98 LE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAM 156
L+ R KA G R LI+ PTRELA+QV A K+ L +
Sbjct: 66 LDFPRRKA-----------------GPARILILTPTRELAMQVAEQAQALAKNTRLNIFT 108
Query: 157 AAG 159
G
Sbjct: 109 ITG 111
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 128 (50.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEE 100
++ E
Sbjct: 64 KINPE 68
Score = 62 (26.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 116 EKYAPKG-HLRALIINPTRELALQV 139
EK P+ +++A++I PTRELA+QV
Sbjct: 63 EKINPESPNIQAIVIAPTRELAIQV 87
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 136 (52.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 37/78 (47%), Positives = 47/78 (60%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
EE V EI T F EL + +L ++ +LG+K+ T I IP +A Q +DVIG AE
Sbjct: 69 EETVTTGEIHTSF---KELGVTEVLCEACDQLGWKKPTKIQIEAIP-VALQGRDVIGLAE 124
Query: 81 TESGKTRAFGLPALQRLL 98
T SGKT AF +P LQ LL
Sbjct: 125 TGSGKTGAFAVPVLQSLL 142
Score = 51 (23.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 124 LRALIINPTRELALQV 139
L L++ PTRELA Q+
Sbjct: 148 LHTLVLTPTRELAFQI 163
Score = 36 (17.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 101 REKAAKMLEEKGEEAEKYA 119
+E+ ML E+ EA+++A
Sbjct: 447 QEEEVMMLVERVSEAQRFA 465
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 46/133 (34%), Positives = 68/133 (51%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
+E+S F ++L L L+ ++ +LG T I + IP + Q KDV+ A+T +GKT
Sbjct: 2 SELSITF---SQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKT 57
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AFGLP +QR +E+ + E +E +RAL++ PTRELA QVL
Sbjct: 58 AAFGLPLIQRFIEQPWQR----EANSKE---------IRALVLVPTRELAQQVLDSLQAY 104
Query: 147 LKSNSLTLAMAAG 159
K L + G
Sbjct: 105 AKGTELKIVAVYG 117
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 46/133 (34%), Positives = 68/133 (51%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
+E+S F ++L L L+ ++ +LG T I + IP + Q KDV+ A+T +GKT
Sbjct: 2 SELSITF---SQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKT 57
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AFGLP +QR +E+ + E +E +RAL++ PTRELA QVL
Sbjct: 58 AAFGLPLIQRFIEQPWQR----EANSKE---------IRALVLVPTRELAQQVLDSLQAY 104
Query: 147 LKSNSLTLAMAAG 159
K L + G
Sbjct: 105 AKGTELKIVAVYG 117
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 149 (57.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 45/138 (32%), Positives = 69/138 (50%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V+ + + +NE P +M+++ + G+ + T + K IP L R D++ A+T S
Sbjct: 129 VSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR-DLMSCAQTGS 187
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLE-EKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
GKT AF LP +Q +L K G Y P AL+++PTRELA+Q+
Sbjct: 188 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRT--YYPC----ALVLSPTRELAIQIHKE 241
Query: 143 ASP-SLKSNSLTLAMAAG 159
A+ S KSN T + G
Sbjct: 242 ATKFSYKSNIQTAILYGG 259
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
L+K++ G+K T I + IP + Q D++ +A+T +GKT AF LP L + + A
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIPVI-RQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAA 70
Query: 105 AKMLEEKGEE-AEKYAPKGH-LRALIINPTRELALQV 139
E AE+ + G +RALI+ PTRELA QV
Sbjct: 71 KSSTTSTDENSAEEKSASGQAIRALILTPTRELANQV 107
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 133 (51.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+ P +A + +V E E T + +L + +L ++ +LG+ + T I IP LA Q +
Sbjct: 8 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGR 62
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREK 103
D+IG AET SGKT AF LP L LLE ++
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR 92
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 93 LFALVLTPTRELAFQI 108
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 148 (57.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 42/105 (40%), Positives = 58/105 (55%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W E +L L+K++ + G+K+ + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPML 372
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L EE E P A+++ PTRELA Q+
Sbjct: 373 AYI--------SRLPPMSEENETEGPY----AVVMAPTRELAQQI 405
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 127 (49.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 20 QEELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
Q+E + E ++E+D ++ ++ L L+K+I LGFK+ T I KA IP + KD+
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP-VGLLGKDIC 221
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKA 104
A T +GKT AF LP L+RL+ + +A
Sbjct: 222 ACAATGTGKTAAFILPVLERLIYKPRQA 249
Score = 65 (27.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + +S+T +A G
Sbjct: 253 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVG 287
Score = 37 (18.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
+Q+ + KA K LEE +EA A KG R+ TRE
Sbjct: 585 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 620
Score = 36 (17.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLR 125
L +R + K EE APKG R
Sbjct: 677 LAKRNRRVKRARALPEEEPAAAPKGPKR 704
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 147 (56.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 44/112 (39%), Positives = 60/112 (53%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L+ LHPL++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLQVPLHPLVLGALRELGFLHMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A++I PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--NQVG-------------AIVITPTRELAIQIDEVLS 103
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 145 (56.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 43/126 (34%), Positives = 70/126 (55%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L+L ++ +I LG+ + T+I + IP + KD+I AA+T +GKT +F LP L
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVL-AGKDIIAAAQTGTGKTASFVLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT- 153
++L + ++ K L K +RALI+ PTRELA+QV S K ++
Sbjct: 61 EQLNSQYKETGKKLRAK-----------RIRALILVPTRELAVQVEASISQYAKYLDISS 109
Query: 154 LAMAAG 159
+AM G
Sbjct: 110 MAMYGG 115
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 132 (51.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
PD E L AE E + +L + +L ++ +LG+ + T I IP LA Q +D+
Sbjct: 7 PDSPTEALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIP-LALQGRDI 64
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREK 103
IG AET SGKT AF LP L LLE ++
Sbjct: 65 IGLAETGSGKTGAFALPILNALLETPQR 92
Score = 52 (23.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 93 LFALVLTPTRELAFQI 108
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 129 (50.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 233
Query: 85 KTRAFGLPALQRLLEEREKAA 105
KT AF LP L+RL+ + +AA
Sbjct: 234 KTAAFALPVLERLIYKPRQAA 254
Score = 62 (26.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + S+T +A G
Sbjct: 257 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVG 291
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 129 (50.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 10 VVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALA 69
+ G P A E + E ++ +L + +L ++ +LG+K T I IP +A
Sbjct: 1 MAAGGEPGKAAGLEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIP-VA 59
Query: 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103
Q +D+IG AET SGKT AF LP LQ LL+ ++
Sbjct: 60 LQGRDIIGLAETGSGKTGAFALPILQALLDAPQR 93
Score = 55 (24.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 119 APKGHLRALIINPTRELALQV 139
AP+ L AL++ PTRELA Q+
Sbjct: 90 APQ-RLFALVLTPTRELAFQI 109
Score = 36 (17.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 101 REKAAKMLEEKGEEAEKYA 119
+E+ ML E+ EA+++A
Sbjct: 393 QEEEVMMLTERVAEAQRFA 411
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 145 (56.1 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 45/125 (36%), Positives = 68/125 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L LH L+K++ +LG++ T I IP++ K+V+ AA+T +GKT +F LP L
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSIL-AGKNVLAAAQTGTGKTASFVLPLLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT-L 154
R + A K PK +R++I+ PTRELALQV + K LT +
Sbjct: 62 RFAD---------------APKIRPK-RVRSIILTPTRELALQVEQNINQYAKYLPLTAM 105
Query: 155 AMAAG 159
AM G
Sbjct: 106 AMYGG 110
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 145 (56.1 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 45/125 (36%), Positives = 68/125 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L LH L+K++ +LG++ T I IP++ K+V+ AA+T +GKT +F LP L
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSIL-AGKNVLAAAQTGTGKTASFVLPLLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT-L 154
R + A K PK +R++I+ PTRELALQV + K LT +
Sbjct: 62 RFAD---------------APKIRPK-RVRSIILTPTRELALQVEQNINQYAKYLPLTAM 105
Query: 155 AMAAG 159
AM G
Sbjct: 106 AMYGG 110
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 42/134 (31%), Positives = 72/134 (53%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L+ L+ ++ +LG+++ T I IPA+ ++DV+ A+T +GKT AF LP L
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAIL-TKQDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q L M + + + A K +RAL++ PTRELALQV K + +
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 155 AMAAGSPLLTSEHS 168
+A G + ++ +
Sbjct: 107 GIAYGGVSIEAQQA 120
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 42/134 (31%), Positives = 72/134 (53%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L+ L+ ++ +LG+++ T I IPA+ ++DV+ A+T +GKT AF LP L
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAIL-TKQDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q L M + + + A K +RAL++ PTRELALQV K + +
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 155 AMAAGSPLLTSEHS 168
+A G + ++ +
Sbjct: 107 GIAYGGVSIEAQQA 120
>UNIPROTKB|H0YI52 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17347 EMBL:AC117498
Ensembl:ENST00000552802 Uniprot:H0YI52
Length = 152
Score = 126 (49.4 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 11 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 69
Query: 88 AFGLPAL 94
AF +P L
Sbjct: 70 AFLIPLL 76
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 132 (51.5 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 14 NGPDD--AQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
+G DD ++++ E +++ W +L L+ L ++ +L +K + I + IP +A Q
Sbjct: 44 SGEDDKGSEDDAAEEQKLT-----WKDLGLNEALCQACDELKWKAPSKIQREAIP-VALQ 97
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREK 103
KDVIG AET SGKT AF LP L LLE ++
Sbjct: 98 GKDVIGLAETGSGKTGAFALPILHALLENPQR 129
Score = 51 (23.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 126 ALIINPTRELALQV 139
AL++ PTRELA Q+
Sbjct: 132 ALVLTPTRELAFQI 145
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 144 (55.7 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 46/117 (39%), Positives = 61/117 (52%)
Query: 35 AWNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L +LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPTQLHPQVLGALGQLGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
L+ LL EK K + G A+II PTRELA+QV V + KS
Sbjct: 67 ILEILLRREEKLKK--NQVG-------------AIIITPTRELAIQVDEVLAHFTKS 108
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 145 (56.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 44/106 (41%), Positives = 58/106 (54%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W L +LH +++++ +LGF T + A IP L KDV A T SGKT AF +PA
Sbjct: 9 WGSLPVKLHDNILQTLKELGFTYMTPVQSACIP-LFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+ LL+ EK KM + G ALII PTRELA+Q+
Sbjct: 68 LEILLKREEKLKKM--QVG-------------ALIITPTRELAMQI 98
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 145 (56.1 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 44/112 (39%), Positives = 59/112 (52%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
AW L+ LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A++I PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--NQVG-------------AIVITPTRELAIQIDEVLS 103
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 118 (46.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 16 PDDAQEELVNEAEISTE---FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
P+D+ E + + E S+ ++ L+L ++K I +L F + T I A IP +A
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIP-IALLG 167
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108
KD++ A+T SGKT A+ +P ++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 71 (30.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 118 YAPKGHLRALIINPTRELALQVLMVASP-SLKSNSLTLAMAAG 159
Y P + +I+ PTRELALQV S N+L + +A G
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVG 236
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 118 (46.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 16 PDDAQEELVNEAEISTE---FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
P+D+ E + + E S+ ++ L+L ++K I +L F + T I A IP +A
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIP-IALLG 167
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108
KD++ A+T SGKT A+ +P ++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 71 (30.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 118 YAPKGHLRALIINPTRELALQVLMVASP-SLKSNSLTLAMAAG 159
Y P + +I+ PTRELALQV S N+L + +A G
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVG 236
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 145 (56.1 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 43/146 (29%), Positives = 83/146 (56%)
Query: 18 DAQEEL-VNEAEIS-TEFDAWNELRLHPLLMKSI-YKLGFKESTSILKARI-PALAHQRK 73
+AQ+EL V T+F + + ++K+I + +++ T + + PAL + K
Sbjct: 59 EAQQELSVQPGSTKITKFSDLAKANIDESIIKAITVDMRYEDMTDVQSMTLAPAL--KGK 116
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D++ A+T +GKT AF +P +Q++L+ + + K + +G ++A + ++A+II+PTR
Sbjct: 117 DLVAQAKTGTGKTLAFLIPVIQKILDA-DPSLKEVS-RGRP-RRFAQRQSIKAIIISPTR 173
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
ELA Q+ A+ + N +T+ A G
Sbjct: 174 ELAEQIGKEATRLCQRNGVTVQTAVG 199
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 122 (48.0 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L L K+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIP-LGLANKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEE 100
++ E
Sbjct: 64 KINPE 68
Score = 62 (26.9 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 116 EKYAPKG-HLRALIINPTRELALQV 139
EK P+ +++A++I PTRELA+QV
Sbjct: 63 EKINPESPNIQAIVIAPTRELAIQV 87
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 144 (55.7 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 46/117 (39%), Positives = 61/117 (52%)
Query: 35 AWNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L +LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPTQLHPQVLGALGQLGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
L+ LL EK K + G A+II PTRELA+QV V + KS
Sbjct: 67 ILEILLRREEKLKK--NQVG-------------AIIITPTRELAIQVDEVLAHFTKS 108
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 142 (55.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 47/124 (37%), Positives = 63/124 (50%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L L++++ GF T+I A IP A +DV+G+A T +GKT A+ LPALQ
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPP-ALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ K K P R LI+ PTRELA+QV A K L +A
Sbjct: 65 HLLDFPRK-------------KSGPP---RILILTPTRELAMQVSDHARELAKHTHLDIA 108
Query: 156 MAAG 159
G
Sbjct: 109 TITG 112
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 131 (51.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
++ ++ E E E + L +HP ++ + KLGF + I + IP A + +D+I
Sbjct: 102 NNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIP-WALKGRDII 160
Query: 77 GAAETESGKTRAFGLPALQRLLE 99
G A+T SGKT AF +P LQ+LLE
Sbjct: 161 GLAQTGSGKTAAFVIPVLQKLLE 183
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 119 APKGHLRALIINPTRELALQV 139
AP+G L L + PTRELA Q+
Sbjct: 184 APQG-LFCLALAPTRELAYQI 203
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 45/129 (34%), Positives = 68/129 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W++ L + I LG+++ TSI IPA+ R DVIG A+T SGKT AF LP
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGR-DVIGVAKTGSGKTIAFLLPMF 477
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ + ++R + GE G + A+I+ PTRELA+Q+ P LK ++
Sbjct: 478 RHIKDQRPL------KTGE--------GPI-AIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 155 AMA-AGSPL 162
A G+P+
Sbjct: 523 CCAYGGAPI 531
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 40/102 (39%), Positives = 57/102 (55%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL + L+K+ +LG+K + I +P A + KDVIG A+T SGKT AF +P LQ L
Sbjct: 13 ELGVREELVKACERLGWKNPSKIQAEALP-FALEGKDVIGLAQTGSGKTGAFAIPILQAL 71
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LE + +KG P A +++PTRELA+Q+
Sbjct: 72 LEYVYDSEP---KKGRR-----PDPAFFACVLSPTRELAIQI 105
>UNIPROTKB|A6H7B6 [details] [associations]
symbol:DDX24 "DDX24 protein" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:DAAA02053048
EMBL:BC146184 IPI:IPI00687716 RefSeq:NP_001092515.1 UniGene:Bt.9433
Ensembl:ENSBTAT00000004441 GeneID:529613 KEGG:bta:529613
InParanoid:A6H7B6 NextBio:20875064 Uniprot:A6H7B6
Length = 852
Score = 109 (43.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
P A+ + + + AW +L + +++++ LGF T I + + D+
Sbjct: 173 PKKAKTWMPEMHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 232
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREK 103
+GAAET SGKT AF +P + +L + K
Sbjct: 233 LGAAETGSGKTLAFAIPMIDAVLRWQVK 260
Score = 81 (33.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 100 EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ E+A K+ +E G PK L L++ PTRELA+QV K S+ A+ G
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 126 (49.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 35/88 (39%), Positives = 48/88 (54%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
PD L AE E + +L + +L ++ +LG+ + T I IP LA Q +D+
Sbjct: 7 PDSPSGALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIP-LALQGRDI 64
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREK 103
IG AET SGKT AF LP L LLE ++
Sbjct: 65 IGLAETGSGKTGAFALPILNALLETPQR 92
Score = 52 (23.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 93 LFALVLTPTRELAFQI 108
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
P A+ + + + AW +L + +++++ LGF T I + + D+
Sbjct: 174 PKKAKTWMPEVQDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 76 IGAAETESGKTRAFGLPALQRLLE-EREKAAKMLEEKG 112
+GAAET SGKT AF +P + +L+ + KA + G
Sbjct: 234 LGAAETGSGKTLAFAIPMIHSVLQWHKMKAPPIPSSAG 271
Score = 74 (31.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 100 EREKAAKMLEEKGEEAEKYA--PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMA 157
+ E+A K+ +E ++ Y P+ L L++ PTRELA+QV K + A+
Sbjct: 356 DEEQAGKLKQELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAIL 415
Query: 158 AG 159
G
Sbjct: 416 VG 417
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 122 (48.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKA 104
KT AF LP L+RL+ + +A
Sbjct: 237 KTAAFALPVLERLIYKPRQA 256
Score = 62 (26.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + S+T +A G
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVG 294
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 118 (46.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I+K GFK T I + IP L R DV+G A T SGKT AF +P ++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR-DVVGMARTGSGKTAAFVIPMIE 129
Query: 96 RL 97
L
Sbjct: 130 HL 131
Score = 68 (29.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TLAMAAGSPL 162
E + + RALI++P RELALQ + V K L ++A+ G L
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSL 179
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 49/140 (35%), Positives = 67/140 (47%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V ++ W++ L + I KLGF TSI IPA+ R DVIG A+T S
Sbjct: 531 VRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGR-DVIGVAKTGS 589
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF +P + + ++R E E P G LI+ PTRELA Q+
Sbjct: 590 GKTMAFLIPMFRHIKDQRPL---------ENME--GPIG----LIMTPTRELATQIHKDC 634
Query: 144 SPSLKSNSLTLAMA-AGSPL 162
P LK+ +L A G+P+
Sbjct: 635 KPFLKALNLRAVCAYGGAPI 654
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 120 (47.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D E +A E ++++ L L+K+I +GFK+ T I KA +P + KD+
Sbjct: 185 DTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVP-VGLLGKDICA 243
Query: 78 AAETESGKTRAFGLPALQRLL-EERE 102
A T +GKT AF LP L+RL+ + RE
Sbjct: 244 CAATGTGKTAAFMLPVLERLIYKPRE 269
Score = 64 (27.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS 168
R L++ PTREL +QV VA + +++ +A G L S+ +
Sbjct: 274 RVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEA 317
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 132 (51.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q E NE E F++++EL L P L+++ L + + T I IP A + D+IG A
Sbjct: 70 QNENTNEDE---SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPP-ALEGHDIIGLA 125
Query: 80 ETESGKTRAFGLPALQRLLEERE 102
+T SGKT AF +P L RL ++E
Sbjct: 126 QTGSGKTAAFAIPILNRLWHDQE 148
Score = 43 (20.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 126 ALIINPTRELALQV 139
A I+ PTRELA Q+
Sbjct: 152 ACILAPTRELAQQI 165
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 138 (53.6 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L P +++++ + G++E T I + IPA+ R D++ +A+T +GKT F LP L
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q L+ + A KG P +RALI+ PTRELA Q+
Sbjct: 61 QHLITRQPHA------KGRR-----P---VRALILTPTRELAAQI 91
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 129 (50.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 19 AQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGA 78
A++E E ++ EL + L ++ +G+K T I IP LA + +DVIG
Sbjct: 31 AKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIP-LALEGRDVIGL 89
Query: 79 AETESGKTRAFGLPALQRLLE 99
AET SGKT AF LP LQ L+E
Sbjct: 90 AETGSGKTAAFALPMLQALME 110
Score = 46 (21.3 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 119 APKGHLRALIINPTRELALQV 139
AP+ L L++ PTRELA Q+
Sbjct: 111 APQT-LFGLVLAPTRELAYQI 130
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 43/124 (34%), Positives = 64/124 (51%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L + +K +Y+ F T I + IP LA + K ++ +ET SGKT AF LP L+
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIP-LALEGKSILANSETGSGKTLAFVLPILE 147
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL+ + KG Y +ALI+ PTREL+LQ V K ++T +
Sbjct: 148 RLLQSVNIKMRRNNMKGS----Y---NITKALILLPTRELSLQCYDVIRSLTKYVTITYS 200
Query: 156 MAAG 159
+ G
Sbjct: 201 LFCG 204
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 43/124 (34%), Positives = 64/124 (51%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L + +K +Y+ F T I + IP LA + K ++ +ET SGKT AF LP L+
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIP-LALEGKSILANSETGSGKTLAFVLPILE 147
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL+ + KG Y +ALI+ PTREL+LQ V K ++T +
Sbjct: 148 RLLQSVNIKMRRNNMKGS----Y---NITKALILLPTRELSLQCYDVIRSLTKYVTITYS 200
Query: 156 MAAG 159
+ G
Sbjct: 201 LFCG 204
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 117 (46.2 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
+D + +N+ + W ++ L + K+I K GF + T I + IP + KDV+
Sbjct: 7 EDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIM-DGKDVV 65
Query: 77 GAAETESGKTRAFGLPALQRL 97
+ T SGKT AF +P LQ+L
Sbjct: 66 AMSRTGSGKTAAFVIPMLQKL 86
Score = 68 (29.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS 168
+RAL+++PTRELALQ V + L A G + + S
Sbjct: 94 IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFS 138
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 20 QEELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
Q+E + E ++E+D ++ ++ L L+K+I LGFK+ T I KA IP + KD+
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP-VGLLGKDIC 221
Query: 77 GAAETES-GKTRAFGLPALQRLLEEREKA 104
A T + GKT AF LP L+RL+ + +A
Sbjct: 222 ACAATGTVGKTAAFILPVLERLIYKPRQA 250
Score = 65 (27.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + +S+T +A G
Sbjct: 254 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVG 288
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
+Q+ + KA K LEE +EA A KG R+ TRE
Sbjct: 586 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 621
Score = 36 (17.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLR 125
L +R + K EE APKG R
Sbjct: 678 LAKRNRRVKRARALPEEEPAAAPKGPKR 705
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 443
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF +P L + K+ ++ EE+++ P A+I+ PTRELA Q+
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQI 484
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 384 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 442
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF +P L + K+ ++ EE+++ P A+I+ PTRELA Q+
Sbjct: 443 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQI 483
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 443
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF +P L + K+ ++ EE+++ P A+I+ PTRELA Q+
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQI 484
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 443
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF +P L + K+ ++ EE+++ P A+I+ PTRELA Q+
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQI 484
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+I +W + L P +++ I K G+KE T I + IP + Q +D+IG AET SGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP-IGLQNRDIIGVAETGSGKTA 443
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF +P L + K+ ++ EE+++ P A+I+ PTRELA Q+
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQI 484
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 139 (54.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L ++K + K+ +KE +SI +A IP L QRKD+IG AET SGKT AF +P +
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL-QRKDLIGIAETGSGKTAAFIIPLII 309
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + L E YA +++ PTRELA Q+
Sbjct: 310 AISK-----LPPLTESNMHLGPYA-------VVLAPTRELAQQI 341
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 112 (44.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ AW +L + +++++ LGF T I + + D++GAAET SGKT AF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 92 PALQRLLE-EREKAAKMLEEKG 112
P + +L+ + KA + G
Sbjct: 251 PMIHSVLQWHKMKAPPIPRSTG 272
Score = 73 (30.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 100 EREKAAKMLEEKGEEAEKYA--PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMA 157
+ E+A K+ +E ++ Y P+ L L++ PTRELA+QV K + A+
Sbjct: 362 DAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAIL 421
Query: 158 AG 159
G
Sbjct: 422 VG 423
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 138 (53.6 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/112 (39%), Positives = 58/112 (51%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A+II PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--SQVG-------------AIIITPTRELAIQIDEVLS 103
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 138 (53.6 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 45/114 (39%), Positives = 58/114 (50%)
Query: 28 EISTEFDAWNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E TE W+ L L P +++++ LGF T + A IP L KDV A T SGK
Sbjct: 2 EAVTE-GGWSSLPVALSPGVLRALQDLGFDRMTPVQSATIP-LFMSNKDVAAEAVTGSGK 59
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T AF +P L+ LL EK KM + G A+II PTRELA+Q+
Sbjct: 60 TLAFVIPILEILLRREEKLKKM--QVG-------------AIIITPTRELAIQI 98
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 138 (53.6 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 44/112 (39%), Positives = 58/112 (51%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A+II PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--SQVG-------------AIIITPTRELAIQIDEVLS 103
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 139 (54.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 42/127 (33%), Positives = 68/127 (53%)
Query: 16 PDDAQEELVN--EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
PDD + L N E ++ + A+ + + +L FK+ T I K IP +A K
Sbjct: 185 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLDFKKPTPIQKETIP-IALSGK 235
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DVIG A T SGKT A+G+P L++ ++ + ++++ ++ + P G +I PTR
Sbjct: 236 DVIGKATTGSGKTLAYGIPILEKYIQ----SLNLIKQNNKDKKINHPTG----IIFAPTR 287
Query: 134 ELALQVL 140
ELA QV+
Sbjct: 288 ELAHQVV 294
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 123 (48.4 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
+L++HP ++++I +G++ T+I A IPAL DV+G A+T +GKT AF +P L ++
Sbjct: 17 DLQIHPRVLRAIGDVGYESPTAIQAATIPALM-AGSDVVGLAQTGTGKTAAFAIPMLSKI 75
Score = 54 (24.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 125 RALIINPTRELALQV 139
+AL++ PTRELALQV
Sbjct: 83 QALVLVPTRELALQV 97
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 137 (53.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 37/70 (52%), Positives = 45/70 (64%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEE 100
LP L+RL EE
Sbjct: 63 LPILERLSEE 72
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 123 (48.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+ P + + V E E T + +L + +L ++ +LG+ + T I IP LA Q +
Sbjct: 34 DSPAEEPQPAVQEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGR 88
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREK 103
D+IG AET SGKT AF LP L LLE ++
Sbjct: 89 DIIGLAETGSGKTGAFALPILNALLETPQR 118
Score = 52 (23.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 119 LFALVLTPTRELAFQI 134
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 122 (48.0 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
++T ++ + L ++K + LGF+ T I IP LA KD++GAA T SGKT A
Sbjct: 254 MTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIP-LALLGKDIVGAAVTGSGKTAA 312
Query: 89 FGLPALQRLLEEREK 103
F +P L+RLL +K
Sbjct: 313 FIVPILERLLYRPKK 327
Score = 58 (25.5 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 118 YAPKG--HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
Y PK R LI+ PTRELA+Q VA+ + + + G
Sbjct: 323 YRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 122 (48.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+A + V E E T + +L + +L ++ +LG+ + T I IP LA Q +D+IG
Sbjct: 11 EAPQTAVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGRDIIG 65
Query: 78 AAETESGKTRAFGLPALQRLLEEREK 103
AET SGKT AF LP L LLE ++
Sbjct: 66 LAETGSGKTGAFALPILNALLETPQR 91
Score = 52 (23.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 92 LFALVLTPTRELAFQI 107
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 122 (48.0 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 267
Query: 85 KTRAFGLPALQRLLEEREKA 104
KT AF LP L+RL+ + +A
Sbjct: 268 KTAAFALPVLERLIYKPRQA 287
Score = 58 (25.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + ++T +A G
Sbjct: 291 RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVG 325
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 135 (52.6 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F ++ L L L+++I + G+ E T + + IP + Q +DV+ A+T +GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRL R + + K +RALI+ PTRELA+QV
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQV 102
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 135 (52.6 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F ++ L L L+++I + G+ E T + + IP + Q +DV+ A+T +GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRL R + + K +RALI+ PTRELA+QV
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQV 102
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 135 (52.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 45/112 (40%), Positives = 60/112 (53%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+ S+ ++ EL + L + +LG+ T + A IPA+ R DV+ A T SGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGR-DVLAGANTGSGKTA 61
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF LP LQRL E AK A+K A G +R L++ PTRELA QV
Sbjct: 62 AFALPLLQRLSE-----AK-------SADKSA--GVVRCLVLVPTRELAQQV 99
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 135 (52.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 45/112 (40%), Positives = 60/112 (53%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+ S+ ++ EL + L + +LG+ T + A IPA+ R DV+ A T SGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGR-DVLAGANTGSGKTA 61
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF LP LQRL E AK A+K A G +R L++ PTRELA QV
Sbjct: 62 AFALPLLQRLSE-----AK-------SADKSA--GVVRCLVLVPTRELAQQV 99
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 138 (53.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+ I +WNE ++ I K+G+KE T I + IP + Q +D+IG AET S
Sbjct: 384 IKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIP-IGLQNRDIIGVAETGS 442
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT AF +P L + + K+ E+ E+ ++ P A+I+ PTRELA Q+
Sbjct: 443 GKTLAFLIPLLSWI----QSLPKI--ERLEDVDQ-GPY----AIIMAPTRELAQQI 487
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 134 (52.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 42/126 (33%), Positives = 70/126 (55%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++L L +L++++ +LG+++ T I IP + Q +D+I AA+T +GKT +F LP L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-T 153
++L +G+ K +RALI+ PTRELA+QV K L +
Sbjct: 61 EKL------------RQGQTQRKK----RVRALILVPTRELAMQVAEKVEQYGKDTGLKS 104
Query: 154 LAMAAG 159
LA+ G
Sbjct: 105 LAVFGG 110
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 134 (52.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 42/126 (33%), Positives = 70/126 (55%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++L L +L++++ +LG+++ T I IP + Q +D+I AA+T +GKT +F LP L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-T 153
++L +G+ K +RALI+ PTRELA+QV K L +
Sbjct: 61 EKL------------RQGQTQRKK----RVRALILVPTRELAMQVAEKVEQYGKDTGLKS 104
Query: 154 LAMAAG 159
LA+ G
Sbjct: 105 LAVFGG 110
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 136 (52.9 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 44/112 (39%), Positives = 57/112 (50%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ + +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPRVLDVLQELGFPYMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
L+ LL EK K + G A+II PTRELA+Q+ V S
Sbjct: 67 ILEILLRREEKLKK--SQVG-------------AIIITPTRELAVQIDEVLS 103
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 120 (47.3 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLL 98
KT AF LP L+RL+
Sbjct: 237 KTAAFALPVLERLI 250
Score = 59 (25.8 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + ++T +A G
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVG 294
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 120 (47.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 199 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 257
Query: 85 KTRAFGLPALQRLL 98
KT AF LP L+RL+
Sbjct: 258 KTAAFALPVLERLI 271
Score = 59 (25.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V + ++T +A G
Sbjct: 281 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVG 315
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 137 (53.3 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 17 DDAQEELV-NEAEISTEFDAWNELRLHPLLMKSIY-KLGFKESTSILKARIPALAHQRKD 74
D+ E+ A + D + L L P L + KL K T+I KA I L + D
Sbjct: 133 DEPMEDAKPTNAPLIDGLDTFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETD 192
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
AET SGKT A+ LP +QR++ +A + KG+ + + G L A+I+ PTRE
Sbjct: 193 AFIQAETGSGKTLAYLLPLVQRIMA-LSRAKNEGDAKGDTSV-HRDSG-LFAIILAPTRE 249
Query: 135 LALQVLMVASPSLK 148
L Q+ +V L+
Sbjct: 250 LCKQISVVLEGLLR 263
>UNIPROTKB|G3V529 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:13266 ChiTaRS:DDX24 ProteinModelPortal:G3V529 SMR:G3V529
Ensembl:ENST00000555054 ArrayExpress:G3V529 Bgee:G3V529
Uniprot:G3V529
Length = 816
Score = 112 (44.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
P A+ + + + AW +L + +++++ LGF T I + + D+
Sbjct: 131 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 190
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAA 105
+GAAET SGKT AF +P + +L+ +++ A
Sbjct: 191 LGAAETGSGKTLAFAIPMIHAVLQWQKRNA 220
Score = 69 (29.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
E+ + L++K + Y PK L L++ PTRELA+QV
Sbjct: 321 EQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQV 360
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 125 (49.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
EE+ + E + ++ EL + L + +LG+ + + I +A +P A Q KDVIG AE
Sbjct: 31 EEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPH-ALQGKDVIGLAE 89
Query: 81 TESGKTRAFGLPALQRLLE 99
T SGKT AF +P LQ LL+
Sbjct: 90 TGSGKTGAFAIPVLQSLLD 108
Score = 47 (21.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 127 LIINPTRELALQV 139
L++ PTRELA Q+
Sbjct: 116 LVLTPTRELAFQI 128
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 39/104 (37%), Positives = 60/104 (57%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L P +++ I K G+K+ T I + IP + Q +D+IG AET SGKT AF +P L
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIP-IGLQNRDIIGVAETGSGKTAAFLIPLLV 438
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ K+ ++ E++++ P A+I+ PTRELA Q+
Sbjct: 439 WITT----LPKI--DRIEDSDQ-GPY----AIILAPTRELAQQI 471
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/108 (32%), Positives = 61/108 (56%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D +++L + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 208 DRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKR-DLMACAQTGSGKTAAFLLPV 266
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAP-KGHLRALIINPTRELALQV 139
L ++ + +A + + +E KY K + +L++ PTRELALQ+
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQI 314
>UNIPROTKB|Q9GZR7 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003724 "RNA helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 EMBL:AF214731
EMBL:AL136886 EMBL:AK025162 EMBL:BC008847 EMBL:BC009406
IPI:IPI00006987 RefSeq:NP_065147.1 UniGene:Hs.510328
ProteinModelPortal:Q9GZR7 SMR:Q9GZR7 DIP:DIP-47301N IntAct:Q9GZR7
MINT:MINT-1378437 STRING:Q9GZR7 PhosphoSite:Q9GZR7 DMDM:18202929
SWISS-2DPAGE:Q9GZR7 PaxDb:Q9GZR7 PeptideAtlas:Q9GZR7 PRIDE:Q9GZR7
DNASU:57062 Ensembl:ENST00000330836 GeneID:57062 KEGG:hsa:57062
UCSC:uc001ycj.3 CTD:57062 GeneCards:GC14M094517 HGNC:HGNC:13266
HPA:HPA002554 MIM:606181 neXtProt:NX_Q9GZR7 PharmGKB:PA27211
HOGENOM:HOG000290702 HOVERGEN:HBG104200 InParanoid:Q9GZR7
OMA:DQQEERR PhylomeDB:Q9GZR7 ChiTaRS:DDX24 GenomeRNAi:57062
NextBio:62861 ArrayExpress:Q9GZR7 Bgee:Q9GZR7 CleanEx:HS_DDX24
Genevestigator:Q9GZR7 GermOnline:ENSG00000089737 Uniprot:Q9GZR7
Length = 859
Score = 112 (44.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
P A+ + + + AW +L + +++++ LGF T I + + D+
Sbjct: 174 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAA 105
+GAAET SGKT AF +P + +L+ +++ A
Sbjct: 234 LGAAETGSGKTLAFAIPMIHAVLQWQKRNA 263
Score = 69 (29.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
E+ + L++K + Y PK L L++ PTRELA+QV
Sbjct: 364 EQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQV 403
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 325 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 383
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 384 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 428
Query: 155 AMAAG 159
G
Sbjct: 429 VCVYG 433
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/113 (36%), Positives = 62/113 (54%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
ST F+A++ L L+++I +GF+ T I IP Q++D+I A T SGKT A+
Sbjct: 16 STTFEAFH---LDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAY 72
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+P ++ +LE ++ + GEE G L +I+ PTRELA QV V
Sbjct: 73 LIPVIETILEYKKTI-----DNGEE------NGTL-GIILVPTRELAQQVYNV 113
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/115 (36%), Positives = 66/115 (57%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E S+E +++ L P L ++I+K F++ TS+ IP LA + KD++ A T SGKT
Sbjct: 9 EESSE-KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP-LALEGKDLVAQARTGSGKTA 66
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
A+ +P L+ LL++ K ++E +G + AL++ PTRELA QV V
Sbjct: 67 AYLIPILELLLKQ-----KQIDEN--------QRG-IFALLLVPTRELAQQVYNV 107
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 11 VVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAH 70
VV Q E E +T + + EL+L +K+I K+GF TS+ IP L
Sbjct: 19 VVDEKSTSKQNNAAPEGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLA 78
Query: 71 QRKDVIGAAETESGKTRAFGLPALQRL 97
R DV+GAA+T SGKT AF +PA++ L
Sbjct: 79 GR-DVLGAAKTGSGKTLAFLIPAIELL 104
Score = 111 (44.1 bits), Expect = 0.00081, P = 0.00081
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
+DV+GAA+T SGKT AF +PA++ L + K+ P+ ++I PT
Sbjct: 80 RDVLGAAKTGSGKTLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPT 123
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAG 159
RELALQ+ VA ++ +S T + G
Sbjct: 124 RELALQIFGVARELMEFHSQTFGIVIG 150
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 36 WNELRLHPL---LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
W+ L PL +++ + GF++ T + A IP L RKDV A T SGKT AF +P
Sbjct: 6 WSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLL-ARKDVSAEAVTGSGKTLAFLVP 64
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL 152
L+ +L+ R K + PK + AL+I+PTRELA Q+ V + L+ L
Sbjct: 65 MLE-ILQRRHKETP-----------WGPK-EIGALVISPTRELARQISEVLAQFLEHEDL 111
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 43 PLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102
P ++++I G+++ T I + IPA+ + +DV+ +A+T +GKT AF LP LQ
Sbjct: 10 PEILRAISDCGYQKMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ------- 61
Query: 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KM+E E K + R LI+ PTRELA QV
Sbjct: 62 ---KMVENPSETL-----KSNTRVLILTPTRELAAQV 90
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 121 (47.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 202 EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 260
Query: 85 KTRAFGLPALQRLLEEREKA 104
KT AF LP L+RL+ + +A
Sbjct: 261 KTAAFALPVLERLIYKPRQA 280
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R L++ PTREL +QV V +S+ + +G
Sbjct: 284 RVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISG 318
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 126 (49.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
+AE+ +F + EL L P L++SI + F + T I IP A + KD+IG A+T SGK
Sbjct: 117 DAEL--KFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPH-ALEGKDIIGLAQTGSGK 173
Query: 86 TRAFGLPALQRL 97
T AF +P LQ L
Sbjct: 174 TAAFAIPILQSL 185
Score = 45 (20.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 126 ALIINPTRELALQV 139
AL++ PTREL Q+
Sbjct: 194 ALVLAPTRELTFQI 207
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/116 (34%), Positives = 62/116 (53%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
N A I T FD L L+ LL+ +I K+ + ++T I K + + + R D+IG A+T SG
Sbjct: 355 NVAAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMN-RNDLIGVAQTGSG 411
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR-ALIINPTRELALQV 139
KT + LP + +L E+ + + Y + L LI+ PTRELA+Q+
Sbjct: 412 KTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQI 467
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/116 (34%), Positives = 62/116 (53%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
N A I T FD L L+ LL+ +I K+ + ++T I K + + + R D+IG A+T SG
Sbjct: 355 NVAAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMN-RNDLIGVAQTGSG 411
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR-ALIINPTRELALQV 139
KT + LP + +L E+ + + Y + L LI+ PTRELA+Q+
Sbjct: 412 KTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQI 467
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 44/112 (39%), Positives = 59/112 (52%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ + +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPQVLSVLRELGFPYMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
++ LL RE EK+ K + A+II PTRELA+Q+ V S
Sbjct: 67 IVEILLR-RE-------------EKFK-KSQVGAIIITPTRELAVQIEEVLS 103
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 43/112 (38%), Positives = 59/112 (52%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W L LHP ++ + +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 SWESLPVPLHPKVLSVLRELGFPYMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
++ +L RE EK+ K + A+II PTRELA+Q+ V S
Sbjct: 67 -IEEILLRRE-------------EKFK-KSQVGAIIITPTRELAVQIEEVLS 103
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ L P L+++I +LGF T I + IP +++D+I A T SGKT A+ +P +
Sbjct: 16 WDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN 75
Query: 96 RLLEE 100
LL +
Sbjct: 76 NLLTD 80
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 124 LRALIINPTRELALQVLMVASPSL-----KSNSLTLAMAAGSPLLTS 165
++++I+ PTREL+ QV L K N L L+ + +L S
Sbjct: 86 IKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNS 132
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ L P L+++I +LGF T I + IP +++D+I A T SGKT A+ +P +
Sbjct: 16 WDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVN 75
Query: 96 RLLEE 100
LL +
Sbjct: 76 NLLTD 80
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 124 LRALIINPTRELALQVLMVASPSL-----KSNSLTLAMAAGSPLLTS 165
++++I+ PTREL+ QV L K N L L+ + +L S
Sbjct: 86 IKSIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSDQVLNS 132
>UNIPROTKB|F8WEI3 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193
IPI:IPI00925260 ProteinModelPortal:F8WEI3 SMR:F8WEI3
Ensembl:ENST00000415758 ArrayExpress:F8WEI3 Bgee:F8WEI3
Uniprot:F8WEI3
Length = 103
Score = 112 (44.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P L++++ LG+ T I + IP LA + KD++ A T SGKT A+ +P LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 96 RLLEEREKAA 105
LL + A
Sbjct: 68 LLLHRKASCA 77
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 40/105 (38%), Positives = 60/105 (57%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W+E L L++ + ++G+KE T I +A IP +A Q +D+IG A T SGKT AF LP L
Sbjct: 347 SWDESGLPKRLLELVDRVGYKEPTPIQRAAIP-IAMQSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ E ++E E + P A+++ PTRELA Q+
Sbjct: 406 CYIAE-----LPRIDEF-EWRKNDGPY----AIVLAPTRELAQQI 440
>ASPGD|ASPL0000054998 [details] [associations]
symbol:AN0894 species:162425 "Emericella nidulans"
[GO:0000373 "Group II intron splicing" evidence=IEA] [GO:0034337
"RNA folding" evidence=IEA] [GO:0000372 "Group I intron splicing"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EnsemblFungi:CADANIAT00001763
HOGENOM:HOG000204197 OMA:DDEVPTH Uniprot:C8VUS9
Length = 641
Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 43/163 (26%), Positives = 81/163 (49%)
Query: 1 MFHTNCATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPL-LMKSIYKLGFKESTS 59
+FH+ N + + V+ E+ T F E + P L++++ K E+ +
Sbjct: 47 LFHSGQFRFSAQVNAVAENSSQNVSVEELPTRFAELGERNILPRNLVENLTKHMKLETMT 106
Query: 60 ILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119
++ R + + D++ A+T +GKT AF +P +++LL +R +L+ K A
Sbjct: 107 EVQRRTILESVKGGDMLAQAKTGTGKTVAFLIPVVEKLLGDRS----LLKTSYRNGRKIA 162
Query: 120 PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
P +RA++I+PTRELA Q+ + A + L + +A G +
Sbjct: 163 PID-IRAIVISPTRELAEQIAVEAKRLVARTGLQVQVAVGGTM 204
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 40/148 (27%), Positives = 75/148 (50%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD E+ ++++++ + ++M +I + T + K IP + +R D++
Sbjct: 164 DDIPVEVTGN-NCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLM 221
Query: 77 GAAETESGKTRAFGLPALQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
A+T SGKT AF LP L ++ + +A K ++E G + K + +L++ PTREL
Sbjct: 222 ACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRR---KQYPISLVLAPTREL 278
Query: 136 ALQVLMVASP-SLKSNSLTLAMAAGSPL 162
A+Q+ A S +S L + G+ +
Sbjct: 279 AVQIYEEARKFSYRSRVLPCVVYGGADI 306
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T FD + L PL +K I GFK T + +A +P + Q KD++ A+T +GKT AF
Sbjct: 80 TRFD---QFPLSPLTLKGIEDAGFKTMTVVQEATLPLIL-QGKDILAKAKTGTGKTVAFL 135
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LP+++ ++ KA + ++ P + L++ PTRELA Q A+ LK +
Sbjct: 136 LPSIEAVI----KAPPASRDN-----RHPP---IIVLVVCPTRELACQAAAEANILLKYH 183
Query: 151 -SLTLAMAAGSPLLTSE 166
S+ + + G L +E
Sbjct: 184 PSIGVQVVIGGTKLPTE 200
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 45/114 (39%), Positives = 57/114 (50%)
Query: 28 EISTEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E TE W+ L L P ++ ++ LGF T + A IP L KDV A T SGK
Sbjct: 2 EAVTE-GGWSSLPVPLSPGVLLALQDLGFDRMTPVQSATIP-LFMSNKDVAAEAVTGSGK 59
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T AF +P L+ LL EK KM + G A+II PTRELA+Q+
Sbjct: 60 TLAFVIPILEILLRREEKLKKM--QVG-------------AIIITPTRELAIQI 98
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 115 (45.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+P ++K+I + G++ T I IP A + +DV+G A+T +GKT +F LP +
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPP-ALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 96 RLLEEREKA 104
L R +A
Sbjct: 63 LLARGRARA 71
Score = 56 (24.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
R+L++ PTRELA QV K LT A+ G
Sbjct: 75 RSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG 109
Score = 35 (17.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 99 EEREKAAKMLEEKGEEAEKYA 119
EE+ +A EEK A+K A
Sbjct: 385 EEKPEAKPRREEKPARADKPA 405
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 41/134 (30%), Positives = 64/134 (47%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L P L++S+ +G T+I + +P QR D++ A T +GKT +F LPALQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQR-DILARAPTGTGKTASFLLPALQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L++ +Y+ G R LI+ PTRELA Q+ A L +A
Sbjct: 62 HLIDF--------------PRRYS--GQARVLILTPTRELASQIHRYACHLATDQGLNIA 105
Query: 156 MAAGS-PLLTSEHS 168
+ G P E +
Sbjct: 106 IITGGVPYAPQEEA 119
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 41/134 (30%), Positives = 64/134 (47%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L P L++S+ +G T+I + +P QR D++ A T +GKT +F LPALQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQR-DILARAPTGTGKTASFLLPALQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L++ +Y+ G R LI+ PTRELA Q+ A L +A
Sbjct: 62 HLIDF--------------PRRYS--GQARVLILTPTRELASQIHRYACHLATDQGLNIA 105
Query: 156 MAAGS-PLLTSEHS 168
+ G P E +
Sbjct: 106 IITGGVPYAPQEEA 119
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 41/124 (33%), Positives = 62/124 (50%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LHP +++++ K GF T I +P L +DV G A+T +GKT AF
Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALP-LTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL A + + + P RALI+ PTRELA+Q+ A P ++ L L
Sbjct: 70 YLLSHPAIADRKVNQ---------P----RALIMAPTRELAVQIHADAEPLAEATGLKLG 116
Query: 156 MAAG 159
+A G
Sbjct: 117 LAYG 120
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 121 (47.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 16 PDDAQEE-LVNEAE-ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
P+DA + + + +S D + EL L L+++ LG+K+ T I A IP LA +
Sbjct: 147 PEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIP-LALTGR 205
Query: 74 DVIGAAETESGKTRAFGLPALQRLL 98
D+ +A T SGKT AF LP L+RLL
Sbjct: 206 DLCASAITGSGKTAAFALPTLERLL 230
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 125 RALIINPTRELALQV 139
R LI+ PTRELA+Q+
Sbjct: 240 RVLILTPTRELAVQI 254
Score = 38 (18.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 91 LPALQRLLEEREKAAKMLEEKGEE 114
L A + +LE+ E + +E+G+E
Sbjct: 657 LEAAREMLEDNEGEEEEEDEEGDE 680
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ +GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 96 RLLEEREKAA--------KMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ + GEE K +R L I +++ Q+
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 134 (52.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T FD + L PL +K+I GF+ T + +A +P + Q KDV+ A+T +GKT AF
Sbjct: 382 TRFD---QFPLSPLSLKAIKDAGFETMTVVQEATLPIIL-QGKDVLAKAKTGTGKTVAFL 437
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LPA++ ++ K A + + + + L++ PTRELA Q A+ LK +
Sbjct: 438 LPAIEAVI------------KSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYH 485
Query: 151 -SLTLAMAAGSPLLTSE 166
S+ + + G L +E
Sbjct: 486 PSIGVQVVIGGTKLPTE 502
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 113 (44.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ AW L P ++ S+ K GF + I IP A D+IG A+T SGKT AFG+
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPE-ASIGFDIIGKADTGSGKTLAFGI 178
Query: 92 PALQRLLEEREKAAKMLE 109
P L+ L R AK ++
Sbjct: 179 PILEHCL--RNVDAKYVQ 194
Score = 61 (26.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 123 HLRALIINPTRELALQV-----LMVASPSLKSNSLTLAMA 157
+++AL++ PTRELA Q+ L+ SP+++ S+T +A
Sbjct: 192 YVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLA 231
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 17 DDAQEELVN-EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
D+ ++ VN A +++ + +++L+L + K+I ++GF+ T I K IP L R DV
Sbjct: 71 DERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGR-DV 129
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
+GAA+T SGKT AF +P ++ L A K G +P L I +EL
Sbjct: 130 LGAAKTGSGKTLAFLIPTIEMLY-----ALKFKPRNGTGVIIISPTRELALQIFGVAKEL 184
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
+DV+GAA+T SGKT AF +P ++ L A K+ P+ +II+PT
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLY----------------ALKFKPRNGTGVIIISPT 170
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAG 159
RELALQ+ VA LK + T + G
Sbjct: 171 RELALQIFGVAKELLKYHHQTFGIVIG 197
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 117 (46.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + +L + +L ++ +LG+ + T I IP LA Q +D+IG AET SGKT AF L
Sbjct: 24 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGRDIIGLAETGSGKTGAFAL 82
Query: 92 PALQRLLEEREK 103
P L LLE ++
Sbjct: 83 PILNALLETPQR 94
Score = 52 (23.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 124 LRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 95 LFALVLTPTRELAFQI 110
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 133 (51.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 45/130 (34%), Positives = 70/130 (53%)
Query: 14 NGPD--DAQEELVNEAE--ISTEFDAWNELRLHPLLMKSIYK-LGFKESTSILKARIPAL 68
N P+ D VN+ + + T + + EL LHP L+ +++K L TS+ K IP L
Sbjct: 131 NNPEIPDVLSPAVNQVKEKVFTS-NTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVL 189
Query: 69 AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI 128
KD + ++T SGKT A+G+P +Q L + ++ K + ++ G L A++
Sbjct: 190 M-SGKDAVVRSQTGSGKTLAYGIPMVQFL--------QAIQPKVKRSD-----GPL-AVV 234
Query: 129 INPTRELALQ 138
I PTRELALQ
Sbjct: 235 IVPTRELALQ 244
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 121 (47.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P L++++ LG+ T I + IP LA + KD++ A T SGKT A+ +P LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LL R+ ++E+ +R L++ PT+ELA Q
Sbjct: 68 LLLH-RKATGPVVEQA------------VRGLVLVPTKELARQ 97
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 121 (47.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
ELRL L++ +LG K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 ELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 52/149 (34%), Positives = 75/149 (50%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D QEE E E F+ EL L L++++ K G ++ T I ++ IP + + KDV+
Sbjct: 32 DREQEEEQKEEEAPKSFE---ELGLDSRLIRALTKKGIEKPTLIQQSAIPYIL-EGKDVV 87
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
A+T SGKT A+ LP LQ+L +A + +K K AP A I+ P+REL
Sbjct: 88 ARAKTGSGKTLAYLLPLLQKLF-----SADSVSKK-----KLAPS----AFILVPSRELC 133
Query: 137 LQVLMVASP-------SLKSNSLTLAMAA 158
QV S LK+ LT +M+A
Sbjct: 134 QQVYTEVSSLIELCRVQLKAVQLTSSMSA 162
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/125 (34%), Positives = 66/125 (52%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W + + ++ S+ K G+++ T I IPA+ R D+IG A+T SGKT AF LP
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMF 431
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ ++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 155 AMAAG 159
G
Sbjct: 477 VCVYG 481
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 48/150 (32%), Positives = 77/150 (51%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
+++ E V+E T F A E +++ L+K++ LGF T I I L + KDV+
Sbjct: 52 EESSETKVSEFLTKTTF-ASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLL-EGKDVL 109
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
+A+T SGKT AF LPA++ L + K + G G +I++PTREL+
Sbjct: 110 ASAKTGSGKTLAFLLPAIELLHKLNWK-----QHNGT--------G---VIIVSPTRELS 153
Query: 137 LQVLMVASPSLKSNSLTLAMAAGSPLLTSE 166
+Q V S L+ ++LT + G ++E
Sbjct: 154 MQTYGVLSELLEGSNLTYGLVMGGSNRSAE 183
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 115 (45.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 17 DDAQEELVNEA-EI--STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
DD L+ +A EI + E +++ L + P L+ S+ + ++ T+I +A IP + R
Sbjct: 75 DDENPVLIKDALEIGLNAEENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGR- 133
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEE 100
D IG + T SGKT AF +P LQ+ E+
Sbjct: 134 DCIGGSRTGSGKTIAFSVPILQKWAED 160
Score = 55 (24.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 116 EKYA--PKGHLRALIINPTRELALQV 139
+K+A P G + A+I+ PTRELALQ+
Sbjct: 155 QKWAEDPFG-IFAVILTPTRELALQI 179
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 112 (44.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 5 NCATVVVVGNGPDDAQEEL-VNEAEIST-EFDAWNELRLHPLLMKSIYKLGFKESTSILK 62
N + G+ DD E N E + + ++ L +++ +I + GF++ T I +
Sbjct: 106 NASGKTQTGDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQR 165
Query: 63 ARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
IP + Q +D++G A T SGKT AF LP +++L
Sbjct: 166 KTIPLIL-QSRDIVGMARTGSGKTAAFILPMVEKL 199
Score = 65 (27.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
K A + E+ + ++ K RA+I++P+RELA+Q V + L + G
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 163 LTSE 166
L +
Sbjct: 247 LEEQ 250
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 45/138 (32%), Positives = 66/138 (47%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V+ ++ W+ L ++ I KL + + T+I +P + R DV+G A+T S
Sbjct: 368 VSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGR-DVVGVAKTGS 426
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP R ++++E K E P G LI+ PTRELA+Q+
Sbjct: 427 GKTMAFLLPMF-RHIKDQEPV------KDNEG----PIG----LILTPTRELAVQIFRDC 471
Query: 144 SPSLKSNSLTLAMAAGSP 161
P LK+ L A G P
Sbjct: 472 KPFLKTLGLRAVCAYGGP 489
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 121 (47.7 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + L ++ KLGFK T I + IP + ++R DVIG A+T SGKT AF LP +Q
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR-DVIGLAQTGSGKTAAFALPVIQ 106
Query: 96 RL 97
L
Sbjct: 107 EL 108
Score = 45 (20.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 126 ALIINPTRELALQV 139
A+++ PTRELA Q+
Sbjct: 117 AVVLAPTRELAYQI 130
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 129 (50.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/104 (36%), Positives = 55/104 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+K++ G++ + I IPA+ R DV+ AA+T +GKT F LP LQ
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGR-DVMAAAQTGTGKTAGFTLPLLQ 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL KG + ++RALI+ PTRELA Q+
Sbjct: 67 RLSSS----------KGNKVSS----NNVRALILTPTRELAAQI 96
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 106 (42.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F+++N P +M + G++E T I IP + + DVIG A+T +GKT A+ LP
Sbjct: 3 FESFN---FAPAVMAGVRACGYQEPTPIQAQAIPPIL-EGHDVIGLAQTGTGKTAAYALP 58
Query: 93 ALQRLL 98
+Q++L
Sbjct: 59 VIQKML 64
Score = 65 (27.9 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 120 PKGHLRALIINPTRELALQV 139
P+G +R L++ PTRELA Q+
Sbjct: 67 PRGRVRTLVLAPTRELACQI 86
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 128 (50.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 41/104 (39%), Positives = 54/104 (51%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L LM +I +GF E T I + IPA A D+I +++T SGKT AF +PALQ
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPA-AMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL K K P R +I+ PTRELA QV
Sbjct: 62 RL------------SKNRALSKRDP----RVVILTPTRELAKQV 89
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 128 (50.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 41/104 (39%), Positives = 54/104 (51%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L LM +I +GF E T I + IPA A D+I +++T SGKT AF +PALQ
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPA-AMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL K K P R +I+ PTRELA QV
Sbjct: 62 RL------------SKNRALSKRDP----RVVILTPTRELAKQV 89
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 128 (50.1 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL+L P ++K++ G+ E T + A +P A + D++ A+T +GKT AF LPALQRL
Sbjct: 5 ELKLAPHILKAVAACGYTEPTPVQAAAVPR-ALENVDLLATAQTGTGKTAAFVLPALQRL 63
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + P R L++ PTRELA QV
Sbjct: 64 SSPPQGPGR------------GP----RVLVLTPTRELAQQV 89
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 117 (46.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A++ L L L+K++ LG+++ T I +P L + KDVIG A+T SGKT AFGL L
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 95 QRLLEEREKAAKML 108
+L ++ + M+
Sbjct: 70 NKLEVKKFRIQSMV 83
Score = 49 (22.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 121 KGHLRALIINPTRELALQVLMVASPSLKS--NSLTLAMAAGSP 161
K +++++I PTRELA QV + N L + G+P
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTP 118
Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 113 EEAEKYAPKGHLRAL--IINPTRELALQVLMVAS--PSLKSNSLTLAMAAGSPLLTSEHS 168
+EA++ G AL I+ T L Q L+ ++ P + S++ ++ ++ S
Sbjct: 160 DEADRMLEMGFQAALDNIVGRT-PLDRQTLLFSATFPD-QIKSISESIMTDPVMVKIASS 217
Query: 169 XXXXXXXXXXXXXGGEDEKLDSLK 192
G +D++LD+L+
Sbjct: 218 EDQSTISQKFFKVGNDDDRLDALR 241
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 117 (46.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A++ L L L+K++ LG+++ T I +P L + KDVIG A+T SGKT AFGL L
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 95 QRLLEEREKAAKML 108
+L ++ + M+
Sbjct: 70 NKLEVKKFRIQSMV 83
Score = 49 (22.3 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 121 KGHLRALIINPTRELALQVLMVASPSLKS--NSLTLAMAAGSP 161
K +++++I PTRELA QV + N L + G+P
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTP 118
Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 113 EEAEKYAPKGHLRAL--IINPTRELALQVLMVAS--PSLKSNSLTLAMAAGSPLLTSEHS 168
+EA++ G AL I+ T L Q L+ ++ P + S++ ++ ++ S
Sbjct: 160 DEADRMLEMGFQAALDNIVGRT-PLDRQTLLFSATFPD-QIKSISESIMTDPVMVKIASS 217
Query: 169 XXXXXXXXXXXXXGGEDEKLDSLK 192
G +D++LD+L+
Sbjct: 218 EDQSTISQKFFKVGNDDDRLDALR 241
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 111 (44.1 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E ++ P L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 170 EYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 228
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 229 KQPTNKGFRAL 239
Score = 59 (25.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RAL+I+PTRELA Q+
Sbjct: 234 KG-FRALVISPTRELASQI 251
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 129 (50.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 37/94 (39%), Positives = 51/94 (54%)
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
KDV+GAA T SGKT AF +PA++ L +ER ++P+ ++I PT
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKER----------------FSPRNGTGVIVICPT 170
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSE 166
RELA+Q VA LK +S T++M G SE
Sbjct: 171 RELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSE 204
>UNIPROTKB|J3KS25 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000585024
Uniprot:J3KS25
Length = 188
Score = 119 (46.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQR 72
NGPD + E V E+ + D+++++ L L++ IY GF++ ++I +A +P + +
Sbjct: 10 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 67
Query: 73 KDVIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
DVI A++ +GKT F + LQ++ L+ + A +L E A++
Sbjct: 68 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 113
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 99 (39.9 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L L+ +I + G+++ T + + IP LA KD++ A+T +GKT AF LP L+
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIP-LALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 96 RL 97
+L
Sbjct: 62 QL 63
Score = 70 (29.7 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 115 AEKYAPKGHLRALIINPTRELALQV 139
A K A K LRAL++ PTRELA+QV
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQV 88
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 99 (39.9 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L L+ +I + G+++ T + + IP LA KD++ A+T +GKT AF LP L+
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIP-LALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 96 RL 97
+L
Sbjct: 62 QL 63
Score = 70 (29.7 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 115 AEKYAPKGHLRALIINPTRELALQV 139
A K A K LRAL++ PTRELA+QV
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQV 88
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 114 (45.2 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
++ +N L L ++K + LG+ + + I A IP +A KD+I A T SGKT AF +P
Sbjct: 230 YENFNSLSLSRPVLKGLASLGYVKPSPIQSATIP-IALLGKDIIAGAVTGSGKTAAFMIP 288
Query: 93 ALQRLLEEREKAA 105
++RLL + K A
Sbjct: 289 IIERLLYKPAKIA 301
Score = 57 (25.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNS-LTLAMAAG 159
R +++ PTRELA+QV V + S +T +A G
Sbjct: 304 RVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVG 339
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 131 (51.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 42/124 (33%), Positives = 66/124 (53%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W + + ++ ++ K G+++ T I IPA+ + R D+IG A+T SGKT AF LP +
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGR-DLIGIAKTGSGKTIAFLLPMFR 431
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
++++R LEE GE G + A+I+ PTRELALQ+ K+ L +
Sbjct: 432 HIMDQRA-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRVV 476
Query: 156 MAAG 159
G
Sbjct: 477 CVYG 480
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 112 (44.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
I+T E ++HP ++++I GF+ T I IP + H R +++ +A T SGKT A
Sbjct: 154 IATFDQLQKEYKIHPKVIENIQAAGFQVPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLA 212
Query: 89 FGLPALQRLLEEREKAAKML 108
F +P L L + K + L
Sbjct: 213 FCIPLLTHLKQPMNKGFRAL 232
Score = 57 (25.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 121 KGHLRALIINPTRELALQ 138
KG RALII+PTRELA Q
Sbjct: 227 KG-FRALIISPTRELASQ 243
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL 152
M+++ E A+K+ PK + I+ T + +L P++ S+
Sbjct: 261 MIQKASEAAKKFGPKSSRKFDILVTTPNRLIYLLKQDPPAIDLTSV 306
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 129 (50.5 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 40/109 (36%), Positives = 60/109 (55%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
WN+L +L + +I +LGFK + + A IP L KDV+ A T SGKT AF +P
Sbjct: 10 WNKLENKLSDSTLNTINRLGFKSMSPVQSAVIP-LFMSNKDVLVEACTGSGKTLAFVIPI 68
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
++++L+ RE K K + ++II+PTRELA+Q+ V
Sbjct: 69 IEKILK-RETNLK--------------KTDIASIIISPTRELAIQIQQV 102
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 112 (44.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
I+T E ++HP ++++I GF+ T I IP + H R +++ +A T SGKT A
Sbjct: 154 IATFDQLQKEYKIHPKVIENIQAAGFQVPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLA 212
Query: 89 FGLPALQRLLEEREKAAKML 108
F +P L L + K + L
Sbjct: 213 FCIPLLTHLKQPMNKGFRAL 232
Score = 57 (25.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 121 KGHLRALIINPTRELALQ 138
KG RALII+PTRELA Q
Sbjct: 227 KG-FRALIISPTRELASQ 243
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 107 MLEEKGEEAEKYAPKGHLR---ALIINPTRELAL 137
M+++ E A+K+ PK + L+ P R + L
Sbjct: 261 MIQKASEAAKKFGPKSSRKFVDILVTTPNRLIYL 294
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 129 (50.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 32/107 (29%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 181 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 239
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A K ++E G + K + +L++ PTRELA+Q+
Sbjct: 240 LSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTRELAVQI 283
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 104 (41.7 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L+K+I + + E T I K IP + + DV+ A+T +GKT AF LP LQ
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLIL-AKHDVMARAQTGTGKTAAFALPILQ 65
Query: 96 RLL 98
+L+
Sbjct: 66 QLI 68
Score = 62 (26.9 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 121 KGHLRALIINPTRELALQV 139
K LRAL++ PTRELA QV
Sbjct: 74 KPELRALVLTPTRELAQQV 92
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 104 (41.7 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L+K+I + + E T I K IP + + DV+ A+T +GKT AF LP LQ
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLIL-AKHDVMARAQTGTGKTAAFALPILQ 65
Query: 96 RLL 98
+L+
Sbjct: 66 QLI 68
Score = 62 (26.9 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 121 KGHLRALIINPTRELALQV 139
K LRAL++ PTRELA QV
Sbjct: 74 KPELRALVLTPTRELAQQV 92
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 44/124 (35%), Positives = 65/124 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W + ++ +M + K + + TSI IP++ R DVIG A+T SGKT AF LP +
Sbjct: 306 WAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGR-DVIGIAKTGSGKTLAFLLPMFR 364
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L++ E LEE G+ G + A+I+ PTRELA+Q A+ K L +A
Sbjct: 365 HILDQPE-----LEE-GD--------GPI-AVILAPTRELAMQTYKEANKFAKPLGLKVA 409
Query: 156 MAAG 159
G
Sbjct: 410 CTYG 413
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 105 (42.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 61 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 119
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 120 KQPANKGFRAL 130
Score = 62 (26.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 119 APKGHLRALIINPTRELALQV 139
A KG RALII+PTRELA Q+
Sbjct: 123 ANKG-FRALIISPTRELASQI 142
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/105 (30%), Positives = 60/105 (57%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP L
Sbjct: 181 FSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPILS 239
Query: 96 RLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +A K ++E G + K + +L++ PTRELA+Q+
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRR---KQYPISLVLAPTRELAVQI 281
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 63/107 (58%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 178 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 236
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G+ + K + +L++ PTRELA+Q+
Sbjct: 237 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQI 280
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 63/107 (58%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 237
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G+ + K + +L++ PTRELA+Q+
Sbjct: 238 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQI 281
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 237
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 238 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 281
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 238
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 282
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 238
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 282
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 238
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 282
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 120 (47.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D + E V E E A+ L L L+ ++ +GF +T I IP L KDV+G
Sbjct: 3 DQKTETVTEPEAV----AFASLGLPENLLSAVLSIGFTSATDIQALTIPPLL-AGKDVLG 57
Query: 78 AAETESGKTRAFGLPALQRL 97
A+T +GKT AFGLPAL ++
Sbjct: 58 EAQTGTGKTAAFGLPALAKI 77
Score = 46 (21.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 127 LIINPTRELALQV 139
+++ PTRELA+QV
Sbjct: 87 MVLAPTRELAMQV 99
>UNIPROTKB|J3KSN7 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2 Ensembl:ENST00000498746
Uniprot:J3KSN7
Length = 109
Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/104 (33%), Positives = 56/104 (53%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRKD 74
PD E N EI FD ++ L L++ IY GF++ ++I +A IP + + D
Sbjct: 3 PDGVIES--NWNEIVDNFD---DMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI--KGYD 55
Query: 75 VIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
VI A++ +GKT F + LQ+L +E +E A +L E A++
Sbjct: 56 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQ 99
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 109 (43.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF + T I IP +A KDV+G A T SGKT AF +P L
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIP-IALMGKDVVGGAVTGSGKTAAFVVPIL 314
Query: 95 QRLLEEREK 103
+RLL +K
Sbjct: 315 ERLLYRPKK 323
Score = 62 (26.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 118 YAPKG--HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS 168
Y PK R +I+ PTRELA+Q VA+ + +A G L + S
Sbjct: 319 YRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQES 371
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 110 (43.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
L ++ +I K G+K+ T I + IP + R DV+G A T SGKT AF LP ++RL
Sbjct: 106 LTKFILANIAKKGYKQPTPIQRKTIPLIMEGR-DVVGMARTGSGKTAAFVLPLIERL 161
Score = 62 (26.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 114 EAEKYAPKGHLRALIINPTRELALQVL-MVASPSLKSNSLTLAMAAGSPL 162
E K G +RA+I++P+RELALQ V S +N ++ + G L
Sbjct: 159 ERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSL 208
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 222 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 280
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 281 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 324
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W+ L L P + + +GF+ T + + IP LA KDV+ + T SGKT AF +P
Sbjct: 7 WDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGN-KDVVVDSVTGSGKTAAFVIPV 65
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+++++E +K K H +LII PTREL+ Q+
Sbjct: 66 LEKVVKEEANTSKF------------KKAHFHSLIIAPTRELSRQI 99
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E L + K++ G+ ++T I + +P L HQ D++ A+T SGKT AF LP + RL
Sbjct: 345 EANLTETMQKNVAHAGYSKTTPIQQYALP-LVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ L GE Y P R +I+ PTRELA Q+
Sbjct: 404 IDDNN-----LNTAGEGG-CY-P----RCIILTPTRELADQI 434
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E L + K++ G+ ++T I + +P L HQ D++ A+T SGKT AF LP + RL
Sbjct: 345 EANLTETMQKNVAHAGYSKTTPIQQYALP-LVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ L GE Y P R +I+ PTRELA Q+
Sbjct: 404 IDDNN-----LNTAGEGG-CY-P----RCIILTPTRELADQI 434
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
L L L+++I G+ + T + + IPA+ Q +D++ AA+T +GKT F LP L+RL
Sbjct: 6 LGLSEALVRAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++++++ P+ R L++ PTRELA QV
Sbjct: 65 PNGVP---------DKSQRHGPR-QPRVLVLTPTRELAAQV 95
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E L + K++ G+ ++T I + +P L HQ D++ A+T SGKT AF LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLP-LIHQGHDIMACAQTGSGKTAAFLLPIMA 612
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL++E + L GE Y P R +I+ PTREL Q+
Sbjct: 613 RLIDEND-----LNTAGEGG-CY-P----RCIILTPTRELTDQI 645
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E L + K++ G+ ++T I + +P L HQ D++ A+T SGKT AF LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLP-LIHQGHDIMACAQTGSGKTAAFLLPIMA 612
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL++E + L GE Y P R +I+ PTREL Q+
Sbjct: 613 RLIDEND-----LNTAGEGG-CY-P----RCIILTPTRELTDQI 645
>UNIPROTKB|J3QR64 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000581384
Uniprot:J3QR64
Length = 214
Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQR 72
NGPD + E V E+ + D+++++ L L++ IY GF++ ++I +A +P + +
Sbjct: 23 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 80
Query: 73 KDVIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
DVI A++ +GKT F + LQ++ L+ + A +L E A++
Sbjct: 81 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 126
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 238
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 282
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/107 (28%), Positives = 62/107 (57%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPI 238
Query: 94 LQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + +A + ++E G + K + +L++ PTRELA+Q+
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQI 282
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/104 (38%), Positives = 55/104 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L L+K+I K +++ T I IP +A + +D+IG AET SGKT AF LP L
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIP-IALEMRDLIGIAETGSGKTAAFVLPMLS 758
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ K L E + P AL+I P+RELA+Q+
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQI 790
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/104 (38%), Positives = 55/104 (52%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L L+K+I K +++ T I IP +A + +D+IG AET SGKT AF LP L
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIP-IALEMRDLIGIAETGSGKTAAFVLPMLS 758
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ K L E + P AL+I P+RELA+Q+
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQI 790
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 108 (43.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+ + +L L L+K++ LGF+ T I K IP + + +++G A T +GKT A+ LP
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLIL-EGHNLVGQAPTGTGKTAAYLLPV 60
Query: 94 LQRLLEEREKAAKML 108
LQR+ +R K A++L
Sbjct: 61 LQRI--QRGKKAQVL 73
Score = 55 (24.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 125 RALIINPTRELALQV 139
+ LI+ PTRELALQV
Sbjct: 71 QVLIVTPTRELALQV 85
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 108 (43.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+ + +L L L+K++ LGF+ T I K IP + + +++G A T +GKT A+ LP
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLIL-EGHNLVGQAPTGTGKTAAYLLPV 60
Query: 94 LQRLLEEREKAAKML 108
LQR+ +R K A++L
Sbjct: 61 LQRI--QRGKKAQVL 73
Score = 55 (24.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 125 RALIINPTRELALQV 139
+ LI+ PTRELALQV
Sbjct: 71 QVLIVTPTRELALQV 85
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 113 (44.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
+ LV E + + +L + +++SI +LG+K+ T I + +P A +KD+IG +E
Sbjct: 143 KNLVTNEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPH-AFLKKDIIGLSE 201
Query: 81 TESGKTRAFGLPALQRL 97
T SGKT F +P LQ L
Sbjct: 202 TGSGKTACFIIPILQDL 218
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 126 ALIINPTRELALQV 139
AL+I+PTREL +Q+
Sbjct: 227 ALVISPTRELCIQI 240
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 113 (44.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
+ LV E + + +L + +++SI +LG+K+ T I + +P A +KD+IG +E
Sbjct: 143 KNLVTNEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPH-AFLKKDIIGLSE 201
Query: 81 TESGKTRAFGLPALQRL 97
T SGKT F +P LQ L
Sbjct: 202 TGSGKTACFIIPILQDL 218
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 126 ALIINPTRELALQV 139
AL+I+PTREL +Q+
Sbjct: 227 ALVISPTRELCIQI 240
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 102 (41.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 17 DDAQEELVNEAEISTEFD-AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
+D L++ + T + ++ ++ L ++K+ G+ + T I +A IP +A KD+
Sbjct: 130 EDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIP-VALTGKDI 188
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAA 105
A T +GKT AF LP L+R++ R K A
Sbjct: 189 CACAATGTGKTAAFVLPILERMIY-RPKGA 217
Score = 68 (29.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 118 YAPKGH--LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
Y PKG R L++ PTRELA+QV V L + + AG
Sbjct: 212 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG 255
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 111 (44.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D E+ V E D ++++ L P L++ IY GF+ ++I + I + +R DV+
Sbjct: 3 DQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGER-DVLA 61
Query: 78 AAETESGKTRAFGLPALQRL 97
A++ +GKT F + LQ++
Sbjct: 62 QAQSGTGKTATFSISVLQKI 81
Score = 50 (22.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 125 RALIINPTRELALQVLMV 142
+ALI+ PTRELA Q+ V
Sbjct: 89 QALILAPTRELAQQIQKV 106
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 45/118 (38%), Positives = 63/118 (53%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L+ +E+S F+ ++ L L+ SI K+G+ + TSI + IP A KDV+ +A T
Sbjct: 5 LLTLSELSLMFEQFD---LDSELLASINKIGYTKPTSIQELVIPQ-AMVGKDVLASAPTG 60
Query: 83 SGKTRAFGLPALQRLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+GKT AF LP Q LL+ R K P G R LI+ PTRELA+Q+
Sbjct: 61 TGKTAAFLLPIAQHLLDYPRTK----------------P-GFPRVLILTPTRELAIQI 101
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 105 (42.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 169 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 227
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 228 KQPANKGFRAL 238
Score = 62 (26.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 119 APKGHLRALIINPTRELALQV 139
A KG RALII+PTRELA Q+
Sbjct: 231 ANKG-FRALIISPTRELASQI 250
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 47/129 (36%), Positives = 66/129 (51%)
Query: 20 QEELVNEAEISTEFD------AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
QEEL + EFD A+ EL L K + F+ T I IP LA + +
Sbjct: 29 QEELSTLRKAIDEFDLKSTPKAFAELPLSEPTAKGVRDSHFETLTDIQARAIP-LALKGR 87
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D++GAA+T SGKT AF +P L++L E+ +EA+ L AL+++PTR
Sbjct: 88 DILGAAKTGSGKTLAFLVPLLEKLYREQWT---------QEAK-------LGALVLSPTR 131
Query: 134 ELALQVLMV 142
ELA+Q V
Sbjct: 132 ELAVQTFQV 140
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 45/139 (32%), Positives = 71/139 (51%)
Query: 14 NGPD--DAQEELVNEAEIST-EFDAWNELRLHPLLMKSIYK-LGFKESTSILKARIPALA 69
N PD + + V + + + D++++L LHP L+ +I L TS+ K IP L
Sbjct: 73 NNPDIPEIHRKAVQQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLL 132
Query: 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129
Q KD + ++T SGKT A+G+P +Q L + ++ K + ++ P AL++
Sbjct: 133 -QGKDALVRSQTGSGKTLAYGIPLVQSL--------QGMQSKIQRSD--GPY----ALVL 177
Query: 130 NPTRELALQVLMVASPSLK 148
PTRELALQ LK
Sbjct: 178 VPTRELALQTFDTIQKLLK 196
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
L L L+ +I G+ + T + + IPA+ Q +D++ AA+T +GKT F LP L+RL
Sbjct: 6 LGLSEALVGAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++++++ P+ R L++ PTRELA QV
Sbjct: 65 PNGHP---------DKSQRHGPR-QPRVLVLTPTRELAAQV 95
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 109 (43.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D+Q E N EI+ FD+ + L P L++ +Y GF+ ++I + I + + DVI
Sbjct: 13 DSQIES-NYDEITDSFDS---MELKPELLRGVYAYGFERPSAIQQRAILPIV-KGNDVIA 67
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKML 108
A++ +GKT F + ALQ+L + KA + L
Sbjct: 68 QAQSGTGKTATFSISALQKL-DPNVKACQAL 97
Score = 51 (23.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 125 RALIINPTRELALQVLMV 142
+ALI+ PTRELA Q+ V
Sbjct: 95 QALIVAPTRELAQQIQKV 112
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P L++++ LG+ T I + IP LA + KD++ A T SGKT A+ +P LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LL ++ M E+A +R L++ PT+ELA Q
Sbjct: 68 SLLHKKATGPVM-----EQA--------VRGLVLVPTKELARQ 97
>UNIPROTKB|F1N0P2 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
Uniprot:F1N0P2
Length = 392
Score = 112 (44.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL L L++ ++G K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 ELGLSSWLVEQCRQMGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL L L++ +LG K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL L L++ +LG K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
EL L L++ +LG K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 106 (42.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 168 EYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 226
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 227 KQPTNKGFRAL 237
Score = 59 (25.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RALII+PTRELA Q+
Sbjct: 232 KG-FRALIISPTRELANQI 249
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 34/109 (31%), Positives = 60/109 (55%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
++++++ + ++M +I + T + K IP + +R D++ A+T SGKT AF LP
Sbjct: 223 ESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKR-DLMACAQTGSGKTAAFLLPV 281
Query: 94 LQRLLEEREKAAKMLEEKGEEAE--KYAP-KGHLRALIINPTRELALQV 139
L ++ E A + + E KY K + +L++ PTRELALQ+
Sbjct: 282 LSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQI 330
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 106 (42.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 171 EYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 229
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 230 KQPTNKGFRAL 240
Score = 59 (25.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RALII+PTRELA Q+
Sbjct: 235 KG-FRALIISPTRELANQI 252
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 112 (44.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+ EL L P L++ ++G T + + IP + Q +D +G A+T SGKT AF LP L
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAFVLPVL 61
Query: 95 QRLLEE 100
Q L E+
Sbjct: 62 QVLSED 67
Score = 47 (21.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 39/108 (36%), Positives = 58/108 (53%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L L K++ K G+ + T + K IP ++ R D++ A+T SGKT AF LP LQ
Sbjct: 279 FEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGR-DLMACAQTGSGKTAAFLLPILQ 337
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
R + + A+K E +E E A+I+ PTREL Q+ + A
Sbjct: 338 RFMTDGVAASKFSEI--QEPE---------AIIVAPTRELINQIYLEA 374
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 105 (42.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L L
Sbjct: 167 EYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMHL 225
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 226 KQPTNKGFRAL 236
Score = 60 (26.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RALII+PTRELA Q+
Sbjct: 231 KG-FRALIISPTRELASQI 248
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 125 (49.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E + +++ ++G+ E T I + IP + Q +DVIG AET SGKT AF LP L
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIP-IGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ KM ++ + YA +I+ PTRELA Q+
Sbjct: 362 WITS----LPKMERQEHRDLGPYA-------IIMAPTRELAQQI 394
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 37/87 (42%), Positives = 49/87 (56%)
Query: 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112
GF T+I A P L R DVIG AET SGKT AFGLP L+++L+ L+ K
Sbjct: 92 GFASPTAIQSATWPLLFAGR-DVIGIAETGSGKTLAFGLPCLKKVLD--------LKTKQ 142
Query: 113 EEAEKYAPKGHLRALIINPTRELALQV 139
+ A ++I+PTRELA+Q+
Sbjct: 143 KSCRPLA-------VVISPTRELAMQI 162
>UNIPROTKB|J3QL43 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000584784
Uniprot:J3QL43
Length = 271
Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQR 72
NGPD + E V E+ + D+++++ L L++ IY GF++ ++I +A +P + +
Sbjct: 12 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 69
Query: 73 KDVIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
DVI A++ +GKT F + LQ++ L+ + A +L E A++
Sbjct: 70 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 115
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 105 (42.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 24 VNEAEISTEFD----AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
++ I T +D +++L L P +++ I+ G++ ++I + I + R DV+ A
Sbjct: 9 IDSGLIETNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGR-DVLAQA 67
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKML 108
++ +GKT F + ALQR+ E EKA + L
Sbjct: 68 QSGTGKTATFTISALQRI-NENEKATQAL 95
Score = 55 (24.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 125 RALIINPTRELALQV 139
+ALI+ PTRELALQ+
Sbjct: 93 QALILAPTRELALQI 107
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 105 (42.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 24 VNEAEISTEFD----AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
++ I T +D +++L L P +++ I+ G++ ++I + I + R DV+ A
Sbjct: 9 IDSGLIETNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGR-DVLAQA 67
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKML 108
++ +GKT F + ALQR+ E EKA + L
Sbjct: 68 QSGTGKTATFTISALQRI-NENEKATQAL 95
Score = 55 (24.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 125 RALIINPTRELALQV 139
+ALI+ PTRELALQ+
Sbjct: 93 QALILAPTRELALQI 107
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 35/99 (35%), Positives = 50/99 (50%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
L LLM++I F + T + K IP + R D++ A+T SGKT F P L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGR-DLMACAQTGSGKTGGFLFPLFTELFRS 219
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ EK + Y+ KG+ AL++ PTRELA Q+
Sbjct: 220 ---GPSPVPEKAQSF--YSRKGYPSALVLAPTRELATQI 253
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 34/124 (27%), Positives = 65/124 (52%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD E + ++++++ + ++M +I + T + K IP + +R D++
Sbjct: 142 DDIPVEATG-SNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLM 199
Query: 77 GAAETESGKTRAFGLPALQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
A+T SGKT AF LP L ++ + A + ++E G + K + +L++ PTREL
Sbjct: 200 ACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRR---KQYPISLVLAPTREL 256
Query: 136 ALQV 139
A+Q+
Sbjct: 257 AVQI 260
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
+L LHP + +++ + GF+ T I +P L Q KD+ G A+T +GKT AF + L
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLL-QSKDIAGQAQTGTGKTMAFLVATFNHL 71
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMA 157
L + L + P RA+I+ PTRELA+Q+ A K L + +
Sbjct: 72 LSSSIPEGRQLNQ---------P----RAIIMAPTRELAIQIAKDAILLAKHTRLKVGIV 118
Query: 158 AG 159
G
Sbjct: 119 YG 120
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
+L LHP + +++ + GF+ T I +P L Q KD+ G A+T +GKT AF + L
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLL-QSKDIAGQAQTGTGKTMAFLVATFNHL 71
Query: 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMA 157
L + L + P RA+I+ PTRELA+Q+ A K L + +
Sbjct: 72 LSSSIPEGRQLNQ---------P----RAIIMAPTRELAIQIAKDAILLAKHTRLKVGIV 118
Query: 158 AG 159
G
Sbjct: 119 YG 120
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 121 (47.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P L++++ LG+ T I + IP LA + KD++ A T SGKT A+ +P LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LL R+ ++E+ +R L++ PT+ELA Q
Sbjct: 68 LLLH-RKATGPVVEQA------------VRGLVLVPTKELARQ 97
>UNIPROTKB|E7EMV8 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284
ChiTaRS:EIF4A2 IPI:IPI00927069 ProteinModelPortal:E7EMV8 SMR:E7EMV8
Ensembl:ENST00000445596 ArrayExpress:E7EMV8 Bgee:E7EMV8
Uniprot:E7EMV8
Length = 98
Score = 101 (40.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 15 GPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRK 73
GP+ + V E+ + D ++++ L L++ IY GF++ ++I +A IP + +
Sbjct: 14 GPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI--KGY 71
Query: 74 DVIGAAETESGKTRAFGLPALQRL 97
DVI A++ +GKT F + LQ+L
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQL 95
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 35/124 (28%), Positives = 65/124 (52%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD E + + ++++ + ++M +I + T + K IP + +R D++
Sbjct: 159 DDIPVEATG-SNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKR-DLM 216
Query: 77 GAAETESGKTRAFGLPALQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
A+T SGKT AF LP L ++ + +A K ++E G + K + +L++ PTREL
Sbjct: 217 ACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTREL 273
Query: 136 ALQV 139
A+Q+
Sbjct: 274 AVQI 277
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 35/124 (28%), Positives = 65/124 (52%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD E + + ++++ + ++M +I + T + K IP + +R D++
Sbjct: 162 DDIPVEATG-SNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKR-DLM 219
Query: 77 GAAETESGKTRAFGLPALQRLLEERE-KAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
A+T SGKT AF LP L ++ + +A K ++E G + K + +L++ PTREL
Sbjct: 220 ACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTREL 276
Query: 136 ALQV 139
A+Q+
Sbjct: 277 AVQI 280
>FB|FBgn0086130 [details] [associations]
symbol:KH1 "KH1" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016063 "rhodopsin
biosynthetic process" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
EMBL:AY058512 RefSeq:NP_608544.1 UniGene:Dm.4179 SMR:Q9VPT3
EnsemblMetazoa:FBtr0078009 GeneID:33254 KEGG:dme:Dmel_CG3561
UCSC:CG3561-RA CTD:33254 FlyBase:FBgn0086130 InParanoid:Q9VPT3
OMA:ILCSAET OrthoDB:EOG4X69R7 GenomeRNAi:33254 NextBio:782677
Uniprot:Q9VPT3
Length = 536
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 42/140 (30%), Positives = 66/140 (47%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSI-YKLGFKESTSILKARIPALAHQRKDVIGAA 79
EEL E + EF +++HP L++++ +LG K T I K +P + H + + AA
Sbjct: 95 EELQQEMQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVV-HGNEHCLIAA 153
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
ET GKT + LP + +LL++ + L P R LI+ P RELA Q+
Sbjct: 154 ETGCGKTITYLLPIVDKLLQKEVVTERKLN---------TP----RVLILTPGRELATQI 200
Query: 140 LMVASPSLKSNSLTLAMAAG 159
V + +L + G
Sbjct: 201 AGVTEKLTQGTNLKVQSLLG 220
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P L++++ LG+ T I + IP LA + KD++ A T SGKT A+ +P LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LL ++ M E+A +R L++ PT+ELA Q
Sbjct: 68 LLLHKKATGPVM-----EQA--------VRGLVLVPTKELARQ 97
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 117 (46.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T+F+ + EL+ P ++ ++++LGF E T I K IPA+ +++ VIG ++T +GKT A+
Sbjct: 4 TKFELY-ELK--PFIIDAVHRLGFYEPTDIQKRLIPAVL-KKESVIGQSQTGTGKTHAYL 59
Query: 91 LPALQRL 97
LP L ++
Sbjct: 60 LPLLNKI 66
Score = 41 (19.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 121 KGHLRALIINPTRELALQVLMVA 143
K ++ +I PTRELA Q+ A
Sbjct: 70 KDVVQVVITAPTRELANQIYQEA 92
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 113 (44.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S+ A+ EL L P L++ ++G T + + IP + Q +D +G A+T SGKT AF
Sbjct: 1 SSGMAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAF 59
Query: 90 GLPALQRLLEE 100
LP LQ L E+
Sbjct: 60 VLPVLQVLSED 70
Score = 47 (21.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 71 PYG-IFCLVLTPTRELAYQI 89
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 105 (42.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E +++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 170 EYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 228
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 229 KQPTNKGFRAL 239
Score = 59 (25.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RAL+I+PTRELA Q+
Sbjct: 234 KG-FRALVISPTRELASQI 251
>UNIPROTKB|J3QS69 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000578495
Uniprot:J3QS69
Length = 300
Score = 119 (46.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQR 72
NGPD + E V E+ + D+++++ L L++ IY GF++ ++I +A +P + +
Sbjct: 12 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 69
Query: 73 KDVIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
DVI A++ +GKT F + LQ++ L+ + A +L E A++
Sbjct: 70 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 115
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 106 (42.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 28/57 (49%), Positives = 35/57 (61%)
Query: 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL--LEEREKAAKML 108
+KE T I A P L R DV+G AET SGKT AFG+PALQ L L + + ++L
Sbjct: 185 YKEPTPIQAATWPYLLAGR-DVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVL 240
Score = 57 (25.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 125 RALIINPTRELALQVLMVASPSLKSNSL-TLAMAAGSP 161
R L+++PTRELA+Q + ++ +L + + G+P
Sbjct: 238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP 275
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 121 (47.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 43/119 (36%), Positives = 57/119 (47%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
L P ++ + K GF T I +P L +D+ G A+T +GKT AF LL
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLL-SGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
AA E + E P RA+I+ PTRELA+Q+ A P L S L A+A G
Sbjct: 75 --PAA---EGRAETQ----P----RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 121 (47.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 43/119 (36%), Positives = 57/119 (47%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
L P ++ + K GF T I +P L +D+ G A+T +GKT AF LL
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLL-SGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
AA E + E P RA+I+ PTRELA+Q+ A P L S L A+A G
Sbjct: 75 --PAA---EGRAETQ----P----RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 109 (43.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 36/96 (37%), Positives = 48/96 (50%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILK----ARIPALAH- 70
P +E E EI+ E D+ +L L PLL L I K I A+A
Sbjct: 87 PQSDIDEYFKENEIAVE-DSL-DLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWP 144
Query: 71 ---QRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103
KDV+G AET SGKT AFG+PA+ L+ +++K
Sbjct: 145 YLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK 180
Score = 52 (23.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 121 KGHLRALIINPTRELALQV 139
K ++ L+I+PTRELA Q+
Sbjct: 180 KRGIQVLVISPTRELASQI 198
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 124 (48.7 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 39/143 (27%), Positives = 73/143 (51%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V + ++ +++++++L + + + FK T I ++R + A + +DV+GAA+T S
Sbjct: 38 VEDLDLKAKYESFSDLPISEPTLSGLTSSHFKTLTDI-QSRAISHALKGRDVLGAAKTGS 96
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF +P L+ L ++ ++ L ALII+PTRELA+Q+ V
Sbjct: 97 GKTLAFLVPILENLYRKQ----------------WSDHDGLGALIISPTRELAIQIFEVL 140
Query: 144 SPSLKSNSLTLAMAAGSPLLTSE 166
+ ++ + + G L E
Sbjct: 141 RKIGRYHTFSAGLVIGGKSLKEE 163
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 106 (42.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
++ +EE ++ + T + + L L+K+I K GF T I + IP + D++
Sbjct: 215 NEQEEETTSKKKKKT--GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGH-DIV 271
Query: 77 GAAETESGKTRAFGLPALQRL 97
G A T SGKT AF +P +Q+L
Sbjct: 272 GMARTGSGKTGAFVIPMIQKL 292
Score = 63 (27.2 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 124 LRALIINPTRELALQVLMVASPSLKSNSL-TLAMAAGSPL 162
+RA+I++PTRELA+Q V + L T+ + G +
Sbjct: 301 VRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSM 340
>UNIPROTKB|F1NSN3 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074946 EMBL:AADN02038196 IPI:IPI00579893
Ensembl:ENSGALT00000005401 Uniprot:F1NSN3
Length = 233
Score = 116 (45.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/102 (34%), Positives = 51/102 (50%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E+ L L+ ++ L T++ + IPAL R + AAET SGKT A+ LP L RL
Sbjct: 135 EMGLQSALLTALQDLSIARPTAVQRLAIPALRRGRS-ALCAAETGSGKTLAYLLPLLDRL 193
Query: 98 LEEREKAAKMLEE-KGEEAEKYAPKGHLRALIINPTRELALQ 138
L +E+ +G +P G L++ P+REL Q
Sbjct: 194 LARPPGPEPAVEKPEGSGPRSASPCG----LVVLPSRELVAQ 231
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 122 (48.0 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L L+K++ LG+ + T I + IP LA + KD++ A T SGKT A+ +P +Q
Sbjct: 8 FHEMGLDDRLLKALADLGWSQPTLIQEKAIP-LALEGKDLLARARTGSGKTAAYAVPLIQ 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+L ++ E+A +RA+++ PT+EL QV
Sbjct: 67 RVLTSKQTVR-------EQA--------VRAVVLVPTKELGQQV 95
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 105 (42.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
++T + E L P ++ +I GF+ T I +P + H+R +++ A T SGKT A
Sbjct: 162 VTTFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKR-EILACAPTGSGKTMA 220
Query: 89 FGLPALQRLLEEREKAAKML 108
F LP L L + K + L
Sbjct: 221 FCLPLLAHLRQPLNKGFRAL 240
Score = 58 (25.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 121 KGHLRALIINPTRELALQ 138
KG RALII+PTRELA Q
Sbjct: 235 KG-FRALIISPTRELATQ 251
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 112 (44.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E+ L L++ +LG K+ T + IPA+ R D +G A+T SGKT AF LP LQ+L
Sbjct: 6 EIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGR-DCLGCAKTGSGKTAAFVLPILQKL 64
Query: 98 LEE 100
E+
Sbjct: 65 SED 67
Score = 47 (21.6 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 PKGHLRALIINPTRELALQV 139
P G + L++ PTRELA Q+
Sbjct: 68 PYG-IFCLVLTPTRELAYQI 86
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 119 (46.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQR 72
NGPD + E V E+ + D+++++ L L++ IY GF++ ++I +A +P + +
Sbjct: 12 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 69
Query: 73 KDVIGAAETESGKTRAFGLPALQRL-LEEREKAAKMLEEKGEEAEK 117
DVI A++ +GKT F + LQ++ L+ + A +L E A++
Sbjct: 70 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 115
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 123 (48.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 38/124 (30%), Positives = 66/124 (53%)
Query: 18 DAQEELVNEAEIST--EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
DA +LV+ + T ++++ + + +++ + G+ +T I + +P +A KD+
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVA-DGKDI 338
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
+ A+T SGKT AF LP + RL+ E++ G E Y P R +I+ PTREL
Sbjct: 339 LACAQTGSGKTAAFLLPIMSRLILEKDL------NYGAEGGCY-P----RCIILTPTREL 387
Query: 136 ALQV 139
A Q+
Sbjct: 388 ADQI 391
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 123 (48.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 38/124 (30%), Positives = 66/124 (53%)
Query: 18 DAQEELVNEAEIST--EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
DA +LV+ + T ++++ + + +++ + G+ +T I + +P +A KD+
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVA-DGKDI 338
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
+ A+T SGKT AF LP + RL+ E++ G E Y P R +I+ PTREL
Sbjct: 339 LACAQTGSGKTAAFLLPIMSRLILEKDL------NYGAEGGCY-P----RCIILTPTREL 387
Query: 136 ALQV 139
A Q+
Sbjct: 388 ADQI 391
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 118 (46.6 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 49/145 (33%), Positives = 68/145 (46%)
Query: 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAET 81
E +N EI T F ++L L +K + + ++ T I K I LA Q KDV+GAA+T
Sbjct: 61 EKINVNEI-TRF---SDLPLSKKTLKGLQEAQYRLVTEIQKQTI-GLALQGKDVLGAAKT 115
Query: 82 ESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141
SGKT AF +P L+ L L+ + L LII+PTRELA Q
Sbjct: 116 GSGKTLAFLVPVLEALYR--------LQWTSTDG--------LGVLIISPTRELAYQTFE 159
Query: 142 VASPSLKSNSLTLAMAAGSPLLTSE 166
V K++ + + G L E
Sbjct: 160 VLRKVGKNHDFSAGLIIGGKDLKHE 184
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 102 (41.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 38 ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
E ++ L+++I GF+ T I IP + H R +++ +A T SGKT AF +P L +L
Sbjct: 77 EYKISSRLLQNILDAGFQLPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQL 135
Query: 98 LEEREKAAKML 108
+ K + L
Sbjct: 136 KQPTNKGFRAL 146
Score = 59 (25.8 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 121 KGHLRALIINPTRELALQV 139
KG RAL+I+PTRELA Q+
Sbjct: 141 KG-FRALVISPTRELASQI 158
WARNING: HSPs involving 152 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.127 0.349 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 284 211 0.00081 112 3 11 23 0.44 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 402
No. of states in DFA: 593 (63 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.32u 0.09s 21.41t Elapsed: 00:00:02
Total cpu time: 21.35u 0.10s 21.45t Elapsed: 00:00:02
Start: Fri May 10 12:12:30 2013 End: Fri May 10 12:12:32 2013
WARNINGS ISSUED: 2