BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042526
(284 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255554328|ref|XP_002518204.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223542800|gb|EEF44337.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 496
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V NG DD E V+EAE F AWNELRLHPLLMKSIY+LGFKE T I KA IP AHQ
Sbjct: 141 VSNGEDDTDGESVDEAE----FHAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPPAAHQ 196
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDVIGAAET SGKT AFGLP LQRLLEER+KAA L+E GEEAEKY P G LRALII P
Sbjct: 197 GKDVIGAAETGSGKTLAFGLPILQRLLEERDKAANYLDEMGEEAEKYGPTGLLRALIITP 256
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 257 TRELALQV 264
>gi|224107545|ref|XP_002314517.1| predicted protein [Populus trichocarpa]
gi|222863557|gb|EEF00688.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 101/128 (78%), Gaps = 4/128 (3%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V N DD + E V+E TEF WNELRLHPLLMKSIY+LGFKE T I KA IPA AHQ
Sbjct: 144 VSNNKDDVEGESVDE----TEFYGWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ 199
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDV+GAAET SGKT AFGLP LQRLLEE++KA+ M + GEEAE++APKG LRALII P
Sbjct: 200 GKDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDNVGEEAERFAPKGLLRALIITP 259
Query: 132 TRELALQV 139
TRELA+QV
Sbjct: 260 TRELAIQV 267
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 155 AMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWN-PLSQPKTTTLLPSS----- 208
A+ P ++S+ SN +K KRKRT E ++LDSL WN +SQ +++ S
Sbjct: 3 AVTEAEPRVSSKQSNNKK-GKRKRTHIDPEIDRLDSLPWNSSISQDDPFSVIAGSHELEG 61
Query: 209 --LALMNLTEGKPGKK---LNSKKRKRSSANEEDSGDGDGDEDG 247
L+L + EG G + L+ K +K + D D D DG
Sbjct: 62 GFLSLEEIDEGDYGLEIPGLDKKVKKERKNKSKKQKDSDADADG 105
>gi|449458872|ref|XP_004147170.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Cucumis
sativus]
Length = 848
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 101/123 (82%), Gaps = 4/123 (3%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D+ +++ V+E TE+ AWNELRLHPLLMKSIYKLGFKE T+I KA IPA A+Q KDV+
Sbjct: 203 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 258
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAAET SGKT AFGLP LQR L+EREK+ KM EEKG +A+KYAPK LRALII PTRELA
Sbjct: 259 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 318
Query: 137 LQV 139
LQV
Sbjct: 319 LQV 321
>gi|449509127|ref|XP_004163501.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like, partial
[Cucumis sativus]
Length = 784
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 101/123 (82%), Gaps = 4/123 (3%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D+ +++ V+E TE+ AWNELRLHPLLMKSIYKLGFKE T+I KA IPA A+Q KDV+
Sbjct: 183 DEVEKDAVDE----TEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVV 238
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAAET SGKT AFGLP LQR L+EREK+ KM EEKG +A+KYAPK LRALII PTRELA
Sbjct: 239 GAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKKYAPKSLLRALIITPTRELA 298
Query: 137 LQV 139
LQV
Sbjct: 299 LQV 301
>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine
max]
Length = 810
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 98/126 (77%), Gaps = 4/126 (3%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
N DD EE V+E TEF AWNELRLHPLL+K+I KLGFKE T I KA IPA AHQ K
Sbjct: 159 NVKDDIGEEDVDE----TEFYAWNELRLHPLLLKAICKLGFKEPTPIQKACIPAAAHQGK 214
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DV+GAAET SGKT AFGLP LQRLLEEREKA M+ E+GEE EKYA G LRALII PTR
Sbjct: 215 DVVGAAETGSGKTLAFGLPILQRLLEEREKAGNMVGERGEEPEKYASTGLLRALIIAPTR 274
Query: 134 ELALQV 139
ELALQV
Sbjct: 275 ELALQV 280
>gi|297834580|ref|XP_002885172.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
gi|297331012|gb|EFH61431.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis lyrata subsp.
lyrata]
Length = 831
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 91/128 (71%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V D EE V EI EF AW +RLHPLLMKSIY LGFK+ T I KA A+Q
Sbjct: 166 VSCDDDYKVEEQVEGEEIPPEFSAWGLMRLHPLLMKSIYHLGFKQPTEIQKACFSIAAYQ 225
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDVIGAAET SGKT AFGLP LQRLL+EREK K+ KGE+A+KYA G+LRALII P
Sbjct: 226 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEKAQKYAADGYLRALIITP 285
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 286 TRELALQV 293
>gi|225433316|ref|XP_002282504.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera]
gi|296083755|emb|CBI23744.3| unnamed protein product [Vitis vinifera]
Length = 788
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 96/128 (75%), Gaps = 6/128 (4%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V N DD + + V+EAE F WNELRLHPLLMKSI++LGFK+ T I KA IPA AHQ
Sbjct: 137 VSNDKDDVEGDSVDEAE----FYEWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAAHQ 192
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDV+GA+ET SGKT A GLP LQRLLEEREKAA+ L E E EKYA G LRALII P
Sbjct: 193 GKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENSE--EKYAEGGILRALIITP 250
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 251 TRELALQV 258
>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 798
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 94/124 (75%), Gaps = 5/124 (4%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D EE ++E TE+ AWNELRLHP LMK+I+KLGFKE T I KA +PA AHQ KDVI
Sbjct: 149 DSVDEENIDE----TEYYAWNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVI 204
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE-AEKYAPKGHLRALIINPTREL 135
GAAET SGKT AFGLP LQRLLEEREKA + GEE AEKYA G LR+LII PTREL
Sbjct: 205 GAAETGSGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTREL 264
Query: 136 ALQV 139
ALQV
Sbjct: 265 ALQV 268
>gi|147810431|emb|CAN65340.1| hypothetical protein VITISV_038405 [Vitis vinifera]
Length = 458
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 101/140 (72%), Gaps = 8/140 (5%)
Query: 3 HTNCATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILK 62
TN + VV DD + + V+EAE F WNELR+HPLLMKSI++LGFK+ T I K
Sbjct: 143 QTNEESATVVDK--DDVEGDSVDEAE----FYEWNELRIHPLLMKSIHRLGFKQPTPIQK 196
Query: 63 ARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG 122
A IPA AHQ KDV+GA+ET SGKT A GLP LQRLLEEREKAA+ L E GE EKYA G
Sbjct: 197 ACIPAAAHQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENGE--EKYAEGG 254
Query: 123 HLRALIINPTRELALQVLMV 142
LRALII PTRELALQ+ +
Sbjct: 255 ILRALIITPTRELALQITTI 274
>gi|227202696|dbj|BAH56821.1| AT3G16840 [Arabidopsis thaliana]
Length = 827
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Query: 7 ATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP 66
A+ V +G DD EE V E EI EF AW+ +RLHPLLMKSIY+L FKE T I KA
Sbjct: 165 ASAAVSCDG-DDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFN 223
Query: 67 ALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126
A+Q KDVIGAAET SGKT AFGLP LQRLL+EREK K+ KGEEA+KYA G+LRA
Sbjct: 224 VAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRA 283
Query: 127 LIINPTRELALQV 139
LII PTRELALQV
Sbjct: 284 LIITPTRELALQV 296
>gi|79404523|ref|NP_188307.3| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
gi|374095486|sp|Q93Y39.3|RH13_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|332642351|gb|AEE75872.1| DEAD-box ATP-dependent RNA helicase 13 [Arabidopsis thaliana]
Length = 826
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 94/128 (73%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V DD EE V E EI EF AW+ +RLHPLLMKSIY+L FKE T I KA A+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDVIGAAET SGKT AFGLP LQRLL+EREK K+ KGEEA+KYA G+LRALII P
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 288 TRELALQV 295
>gi|7939577|dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 832
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 94/128 (73%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V DD EE V E EI EF AW+ +RLHPLLMKSIY+L FKE T I KA A+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDVIGAAET SGKT AFGLP LQRLL+EREK K+ KGEEA+KYA G+LRALII P
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 288 TRELALQV 295
>gi|15450790|gb|AAK96666.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 797
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 94/128 (73%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V DD EE V E EI EF AW+ +RLHPLLMKSIY+L FKE T I KA A+Q
Sbjct: 168 VSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQ 227
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDVIGAAET SGKT AFGLP LQRLL+EREK K+ KGEEA+KYA G+LRALII P
Sbjct: 228 GKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 132 TRELALQV 139
TRELALQV
Sbjct: 288 TRELALQV 295
>gi|357167963|ref|XP_003581416.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like
[Brachypodium distachyon]
Length = 872
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 83/109 (76%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
EF AW ELRLHPLL+K++++LGFKE T I KA PA AHQ KDVIGAAET SGKT AFGL
Sbjct: 236 EFYAWLELRLHPLLVKAMHRLGFKEPTPIQKACFPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
P LQRLLEEREKA ++ E + E+ + G LRALI+ PTRELA QV
Sbjct: 296 PILQRLLEEREKATRLNVEDKKAMEESSTGGPLRALILTPTRELAKQVC 344
>gi|326526415|dbj|BAJ97224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 872
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 82/109 (75%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E AW ELRLHPLL+K++++LGF E T I KA IPA AHQ KDVIGAAET SGKT AFGL
Sbjct: 236 ELYAWLELRLHPLLIKAMHRLGFNEPTPIQKACIPAGAHQGKDVIGAAETGSGKTLAFGL 295
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
P LQRLLEEREK ++ E +EAE + G LRALI+ PTRELA QV
Sbjct: 296 PILQRLLEEREKTTRLHVEDEKEAEGSSTGGPLRALILTPTRELAKQVC 344
>gi|242076434|ref|XP_002448153.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
gi|241939336|gb|EES12481.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
Length = 807
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 90/124 (72%), Gaps = 5/124 (4%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D E ++ E ++S W ELRLHPLL+K++ +LGFKE T I K+ PA AHQ KDVI
Sbjct: 200 DKDDELILGEDDVSE----WRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHQGKDVI 255
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAAET SGKT AFGLP LQRLLEEREKAA+ L ++G++ ++ + LRALI+ PTRELA
Sbjct: 256 GAAETGSGKTLAFGLPILQRLLEEREKAAR-LHQEGDKMDERSGGSPLRALILTPTRELA 314
Query: 137 LQVL 140
QV
Sbjct: 315 KQVC 318
>gi|293332967|ref|NP_001169277.1| uncharacterized protein LOC100383140 [Zea mays]
gi|224028341|gb|ACN33246.1| unknown [Zea mays]
Length = 842
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%), Gaps = 5/120 (4%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E ++ E ++S AW ELRLHPLL+K++ +LGFKE T I K+ PA AH+ KDVIGAAE
Sbjct: 200 ELILGEDDVS----AWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHRGKDVIGAAE 255
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFGLP LQRLLEEREKA + L+++ E+ E+ + LRALI+ PTRELA QV
Sbjct: 256 TGSGKTLAFGLPVLQRLLEEREKATR-LQQEDEKMEERSCGSPLRALILTPTRELAKQVC 314
>gi|414586362|tpg|DAA36933.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 842
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%), Gaps = 5/120 (4%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E ++ E ++S AW ELRLHPLL+K++ +LGFKE T I K+ PA AH+ KDVIGAAE
Sbjct: 200 ELILGEDDVS----AWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHRGKDVIGAAE 255
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFGLP LQRLLEEREKA + L+++ E+ E+ + LRALI+ PTRELA QV
Sbjct: 256 TGSGKTLAFGLPVLQRLLEEREKATR-LQQEDEKMEERSCGSPLRALILTPTRELAKQVC 314
>gi|115459372|ref|NP_001053286.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|158513183|sp|A2XVF7.2|RH13_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|158513708|sp|A3AVH5.2|RH13_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 13
gi|32488303|emb|CAE03369.1| OSJNBb0065L13.12 [Oryza sativa Japonica Group]
gi|113564857|dbj|BAF15200.1| Os04g0510400 [Oryza sativa Japonica Group]
gi|116311068|emb|CAH67998.1| OSIGBa0157K09-H0214G12.9 [Oryza sativa Indica Group]
Length = 832
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 79/108 (73%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E AW ELRLHPLL+ ++ +LGFKE T I KA PA AHQ KDVIGAAET SGKT AFGL
Sbjct: 196 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 255
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P LQRLLEE+EKA ++ E ++ + + LRALI+ PTRELA QV
Sbjct: 256 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQV 303
>gi|218195193|gb|EEC77620.1| hypothetical protein OsI_16604 [Oryza sativa Indica Group]
Length = 776
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 79/108 (73%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E AW ELRLHPLL+ ++ +LGFKE T I KA PA AHQ KDVIGAAET SGKT AFGL
Sbjct: 140 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 199
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P LQRLLEE+EKA ++ E ++ + + LRALI+ PTRELA QV
Sbjct: 200 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQV 247
>gi|222629189|gb|EEE61321.1| hypothetical protein OsJ_15428 [Oryza sativa Japonica Group]
Length = 776
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 79/108 (73%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E AW ELRLHPLL+ ++ +LGFKE T I KA PA AHQ KDVIGAAET SGKT AFGL
Sbjct: 140 EVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGL 199
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P LQRLLEE+EKA ++ E ++ + + LRALI+ PTRELA QV
Sbjct: 200 PILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQV 247
>gi|302804899|ref|XP_002984201.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
gi|300148050|gb|EFJ14711.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
Length = 521
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 72/106 (67%), Gaps = 8/106 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNELRLHP L++++ LGF T I KA IPA AH+ KDVIGAAET SGKT AFG+P LQ
Sbjct: 1 WNELRLHPSLLRALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141
RLL+ER+K + A LRALI+ PTRELALQV+
Sbjct: 61 RLLDERDKLLRQ--------NNVASDSPLRALIVTPTRELALQVIC 98
>gi|302781030|ref|XP_002972289.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
gi|300159756|gb|EFJ26375.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
Length = 524
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 70/104 (67%), Gaps = 8/104 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNELRLHP L+ ++ LGF T I KA IPA AH+ KDVIGAAET SGKT AFG+P LQ
Sbjct: 1 WNELRLHPSLLTALSTLGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQ 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL+ER+K + A LRALI+ PTRELALQ+
Sbjct: 61 RLLDERDKLLRQ--------NNVASDSPLRALIVTPTRELALQI 96
>gi|168023770|ref|XP_001764410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684274|gb|EDQ70677.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 741
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Query: 26 EAEISTEFD--AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
EA+ E D AW +LRL+PLLM+++ KL F + T I + I A A+Q KDVIGAAET S
Sbjct: 96 EADDIEEIDMSAWAQLRLNPLLMRALMKLKFSKPTHIQEKCIAAAAYQGKDVIGAAETGS 155
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT AFGLP LQRLL++ EK + + ++A K G LRALI+ PTRELALQV
Sbjct: 156 GKTLAFGLPILQRLLDDHEKIQR--KSGFDKASKKQSGGPLRALIVTPTRELALQV 209
>gi|412987724|emb|CCO20559.1| predicted protein [Bathycoccus prasinos]
Length = 951
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW + LHPLL+K+I KL F T I + + R D++GAAET SGKT AFGLP L
Sbjct: 223 AWAQYDLHPLLLKAIRKLRFTSPTPIQEKVLHPAIKGRMDIVGAAETGSGKTLAFGLPIL 282
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-MVASPSLKSNSLT 153
QRL++++E+ E EE K HLRALI+ PTRELALQV M+A ++ +
Sbjct: 283 QRLMQDKEEEKWYEEYADEEKPGKGKK-HLRALIVTPTRELALQVAKMLADVAIYTGIQI 341
Query: 154 LAMAAGSPLLTSEHSNRRKP 173
A+ G E +++P
Sbjct: 342 AAIVGGMSKQKQERVLKKQP 361
>gi|301103398|ref|XP_002900785.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262101540|gb|EEY59592.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 763
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 16/105 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
WN+ +LHPLLM+S+ GF T I + +PAL R DV+GAA T SGKT AFGLP L
Sbjct: 114 WNKFKLHPLLMQSLQTCGFSAPTRIQERTLLPALVDNR-DVVGAAPTGSGKTLAFGLPIL 172
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL ERE+ + + K ALI+ PTRELA+Q+
Sbjct: 173 SQLLHEREQPGYIKDCK--------------ALILTPTRELAIQI 203
>gi|268564434|ref|XP_002639105.1| Hypothetical protein CBG14924 [Caenorhabditis briggsae]
Length = 357
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 17/133 (12%)
Query: 31 TEFDAWNELRLHP-LLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
T+ AW + P ++++I ++GF + T I A +P R+DV+GAAET SGKT AF
Sbjct: 149 TDVSAWKQFYFLPNEILEAIEQMGFSQPTEIQSAVLPIAVRDRQDVLGAAETGSGKTLAF 208
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-----MVAS 144
G+P + RLLE L K EE PKG RALI+ PTREL +Q++ ++A+
Sbjct: 209 GIPLVSRLLE-------ALSNKEEEE---PPKGP-RALIVAPTRELVIQIMRHINSLIAT 257
Query: 145 PSLKSNSLTLAMA 157
LK+ S+ +A
Sbjct: 258 TPLKAVSIVGGLA 270
>gi|17507641|ref|NP_491652.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
gi|351063669|emb|CCD71883.1| Protein F55F8.2, isoform a [Caenorhabditis elegans]
Length = 746
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 15/133 (11%)
Query: 31 TEFDAWNELRLHP-LLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
T+ AW + P ++++I ++GF E T I A +PA R+DV+GAAET SGKT AF
Sbjct: 151 TDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAF 210
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-----MVAS 144
G+P + RLLE + + ++ E E P RALI+ PTREL +Q++ ++++
Sbjct: 211 GIPLVARLLESSDDS-----QETESTEVRGP----RALIVAPTRELVIQIMKHINALIST 261
Query: 145 PSLKSNSLTLAMA 157
L + S+ +A
Sbjct: 262 TQLIATSIVGGLA 274
>gi|348686576|gb|EGZ26391.1| hypothetical protein PHYSODRAFT_480097 [Phytophthora sojae]
Length = 793
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 62/105 (59%), Gaps = 16/105 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
WN+ +LHPLLM+S+ GF T I + +PAL R DV+GAA T SGKT AFGLP L
Sbjct: 134 WNKFKLHPLLMQSLQTCGFSAPTRIQERTLLPALVDNR-DVVGAAPTGSGKTLAFGLPIL 192
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL ERE+ + K ALI+ PTRELA+Q+
Sbjct: 193 SQLLHEREQPGYTKDCK--------------ALILTPTRELAIQI 223
>gi|308810583|ref|XP_003082600.1| RNA Helicase (ISS) [Ostreococcus tauri]
gi|116061069|emb|CAL56457.1| RNA Helicase (ISS) [Ostreococcus tauri]
Length = 1211
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+ AW E LHPL++++I GF T I + + R D+IGAA+T SGKT AF
Sbjct: 266 CDISAWFEFDLHPLILRAIQDCGFTSPTPIQRECLHPATKGRYDIIGAAQTGSGKTLAFA 325
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
LP L RLL E + K + + P LRALI+ PTRELALQV
Sbjct: 326 LPILHRLLSEGIGLPEDYPLKDGKEREVLPD-VLRALIVCPTRELALQVC 374
>gi|330797646|ref|XP_003286870.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
gi|325083172|gb|EGC36632.1| hypothetical protein DICPUDRAFT_150880 [Dictyostelium purpureum]
Length = 903
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 24/146 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L L PL++K + LGF++ T I A +P D+IGAA+T SGKT AFG+P +Q
Sbjct: 250 WTALNLDPLIIKGLRSLGFEKPTEIQSAVLPVAISNGYDIIGAAQTGSGKTLAFGIPMVQ 309
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-------------------LRALIINPTRELA 136
R+L+ K + +E++GE +K + L +L+I PTRELA
Sbjct: 310 RILQHLRKHGQSVEKEGETRDKQIEEEGDEEEEEEEESTGRSEEHRKLYSLVICPTRELA 369
Query: 137 LQVL-----MVASPSLKSNSLTLAMA 157
+QV ++A +LK S+ +A
Sbjct: 370 IQVTNHIKSIIAFTNLKVVSIVGGLA 395
>gi|145353253|ref|XP_001420934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581170|gb|ABO99227.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 394
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+ AW E LHPL+M++I GF T I + + R D+IGAA+T SGKT AF
Sbjct: 14 CDVSAWFEFDLHPLIMRAIQDCGFTTPTPIQRECLLPATKGRCDIIGAAQTGSGKTLAFA 73
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LP LQRLL + G + LRALI+ PTRELALQV
Sbjct: 74 LPILQRLLSQ-----------GIDV--------LRALIVAPTRELALQV 103
>gi|66812546|ref|XP_640452.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
gi|74997024|sp|Q54TD7.1|DDX24_DICDI RecName: Full=ATP-dependent RNA helicase ddx24; AltName: Full=DEAD
box protein 24
gi|60468476|gb|EAL66480.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
Length = 940
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 26/165 (15%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q+ + E + + WN L PL++K + LGF + T I + IP DVIGAA
Sbjct: 280 QKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIGAA 339
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH---------------- 123
+T SGKT AFG+P +QR+L+ K + +E K + + +
Sbjct: 340 QTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEEEEGRS 399
Query: 124 -----LRALIINPTRELALQVL-----MVASPSLKSNSLTLAMAA 158
L +L+I PTRELA+QV +++ +LK S+ MA+
Sbjct: 400 KEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMAS 444
>gi|299742573|ref|XP_001832577.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
gi|298405246|gb|EAU89326.2| ATP-dependent RNA helicase MAK5 [Coprinopsis cinerea okayama7#130]
Length = 759
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 16 PDDAQEELVNEAEISTEFDA------WNELRLHPLLMKSIYKLGFKESTSILKARIPALA 69
PD+ +E + FD+ W+ L LHP L +SI+ F + T I K IP LA
Sbjct: 128 PDEDSDESADSEPEKEPFDSETLLPEWHPLGLHPRLTRSIHARNFSKPTEIQKEAIP-LA 186
Query: 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129
Q +DV+G A+T SGKT A+GLP L LL ++ ++K + LRALI+
Sbjct: 187 LQGRDVVGVAQTGSGKTLAYGLPILHTLLNQKRPSSKR-------------RRPLRALIL 233
Query: 130 NPTRELALQV 139
PTRELALQV
Sbjct: 234 APTRELALQV 243
>gi|426195290|gb|EKV45220.1| hypothetical protein AGABI2DRAFT_120189 [Agaricus bisporus var.
bisporus H97]
Length = 761
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 72/133 (54%), Gaps = 32/133 (24%)
Query: 17 DDAQEELVNEAEI----STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
DD QE V+ +EI ST W LHP L+ ++Y+ GF+ TSI A IP +A +
Sbjct: 96 DDIQE--VSSSEILPFDSTLLPEWASYSLHPQLLHALYRKGFESPTSIQAAAIP-VAVKG 152
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH------LRA 126
KDV+G A+T SGKT A+G+P L LL + P+ H ++A
Sbjct: 153 KDVVGVAQTGSGKTLAYGIPILHYLLSQ-------------------PRPHPNKRRPVKA 193
Query: 127 LIINPTRELALQV 139
LI+ PTRELALQV
Sbjct: 194 LILAPTRELALQV 206
>gi|392561989|gb|EIW55170.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 677
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T AWN +LHP L +S+Y F E T I +P LA + +DV+G AET SGKT A+G
Sbjct: 33 TLLPAWNTFQLHPQLARSLYARKFTEPTPIQAQTLP-LALKNRDVVGVAETGSGKTLAYG 91
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LP L LL E + +RALI+ PTRELALQV
Sbjct: 92 LPILHHLLT---------EAYSRPIPSSKTRRPVRALIVTPTRELALQV 131
>gi|393907272|gb|EFO18351.2| hypothetical protein LOAG_10144 [Loa loa]
Length = 698
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ W L + ++K+I +GF E I + IP+ R D+IGAAET SGKT AFG+
Sbjct: 133 DMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPSAIRDRFDIIGAAETGSGKTLAFGV 192
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P ++RLL A + E E+ K +RALI+ PTREL +Q+ LK S
Sbjct: 193 PVVERLL-----ANQSFAESSEQ------KKSIRALILAPTRELVMQIRNHIHALLKYTS 241
Query: 152 LTLAMAAG 159
+A G
Sbjct: 242 FKVASIVG 249
>gi|312088074|ref|XP_003145719.1| hypothetical protein LOAG_10144 [Loa loa]
Length = 699
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ W L + ++K+I +GF E I + IP+ R D+IGAAET SGKT AFG+
Sbjct: 134 DMSGWINLYISNTVLKAIADMGFTEPMEIQRLVIPSAIRDRFDIIGAAETGSGKTLAFGV 193
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P ++RLL A + E E+ K +RALI+ PTREL +Q+ LK S
Sbjct: 194 PVVERLL-----ANQSFAESSEQ------KKSIRALILAPTRELVMQIRNHIHALLKYTS 242
Query: 152 LTLAMAAG 159
+A G
Sbjct: 243 FKVASIVG 250
>gi|345560201|gb|EGX43326.1| hypothetical protein AOL_s00215g62 [Arthrobotrys oligospora ATCC
24927]
Length = 801
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAET 81
E +++ ++ + AW L L P ++++ KL F E T I K IP++ D+IG A T
Sbjct: 190 EGLSDDDLEVDLPAWESLSLSPYTLQALQKLTFTEPTPIQKLSIPSIIAGH-DLIGKAAT 248
Query: 82 ESGKTRAFGLPALQRLL---EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
SGKT AFG+P + L ++R AK+L E+ +EA+ L ALI++PTRELA Q
Sbjct: 249 GSGKTLAFGIPIFEHWLSSSKDRAVPAKLLSEEDKEADASKLTNPLSALILSPTRELAHQ 308
Query: 139 V 139
+
Sbjct: 309 I 309
>gi|281207739|gb|EFA81919.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 932
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 23/132 (17%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+ AWN+ L PLL+K + LG+ E T I IPA D+IGAAET SGKT AFG
Sbjct: 309 VDISAWNQYDLDPLLVKGLKALGYGEPTEIQSQVIPAALKNGLDIIGAAETGSGKTLAFG 368
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAE-KYAP----------------------KGHLRAL 127
+P L +L +E++ + K P +GHL +L
Sbjct: 369 IPMLHNILTYLRSINHPVEKQNINVDGKMKPLVEQDDEEEEEEEEEEETATRKQGHLYSL 428
Query: 128 IINPTRELALQV 139
I+ PTRELA+QV
Sbjct: 429 IMCPTRELAIQV 440
>gi|428175672|gb|EKX44561.1| hypothetical protein GUITHDRAFT_109675 [Guillardia theta CCMP2712]
Length = 748
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E++ WN + L L+K++ + GF++ T+I + IPA +R+D+ GAAET SGKT AF L
Sbjct: 186 EYEEWNCVMLRKCLVKALKEQGFEQPTAIQELVIPAAMAKRQDIFGAAETGSGKTLAFAL 245
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P LQR+L+ + +E+ L L+++PTRELA+QV
Sbjct: 246 PMLQRILDSHNFSGIDAKER-----------KLAGLVLSPTRELAIQV 282
>gi|326475209|gb|EGD99218.1| ATP-dependent RNA helicase MAK5 [Trichophyton tonsurans CBS 112818]
Length = 742
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 23 LVNEA--EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++NE E + AW+ L L P L S+ +L F + T I KA IP + R DVIG A
Sbjct: 154 VLNETDEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEILSGR-DVIGKAA 212
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFGLP LQ LL+ +EK L + +++ ALI++PTRELA Q++
Sbjct: 213 TGSGKTLAFGLPILQYLLKRQEKRPSALSKSSDKSPI--------ALILSPTRELAHQLV 264
>gi|326479695|gb|EGE03705.1| ATP-dependent RNA helicase MAK5 [Trichophyton equinum CBS 127.97]
Length = 742
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 23 LVNEA--EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++NE E + AW+ L L P L S+ +L F + T I KA IP + R DVIG A
Sbjct: 154 VLNETDEEADVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEILSGR-DVIGKAA 212
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFGLP LQ LL+ +EK L + +++ ALI++PTRELA Q++
Sbjct: 213 TGSGKTLAFGLPILQYLLKRQEKRPSALSKSSDKSPI--------ALILSPTRELAHQLV 264
>gi|402591039|gb|EJW84969.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 485
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L + ++K++ +GF E T I K IP+ R D+IGAAET SGKT AFG+P ++
Sbjct: 4 WINLYISDAVLKAVADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGVPVVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL + LE G++ KG +RALI+ PTREL +Q+ LK +A
Sbjct: 64 HLLANQS----FLESSGQK------KG-IRALILAPTRELVMQIKNHIDALLKYTPFKVA 112
Query: 156 MAAG 159
G
Sbjct: 113 SVVG 116
>gi|341883047|gb|EGT38982.1| hypothetical protein CAEBREN_08481 [Caenorhabditis brenneri]
Length = 736
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 19/133 (14%)
Query: 31 TEFDAWNELRLHPL-LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
T+ AW +L P +++++ ++GF + T I A +P R DV+GAAET SGKT AF
Sbjct: 148 TDISAWEKLFFLPTEILQAVERMGFSQPTEIQSAVLPIAVRDRMDVLGAAETGSGKTLAF 207
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-----MVAS 144
G+P + RLL++ + + P RALII PTREL +Q++ ++ +
Sbjct: 208 GIPLVSRLLDDISSG---------DQKSSGP----RALIIAPTRELVIQIMRHINALIET 254
Query: 145 PSLKSNSLTLAMA 157
LK+ S+ +A
Sbjct: 255 TPLKATSIVGGLA 267
>gi|449544539|gb|EMD35512.1| hypothetical protein CERSUDRAFT_139322 [Ceriporiopsis subvermispora
B]
Length = 783
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E LHP L +++Y F + T I +P LA Q +D++G AET SGKT A+GLP LQ
Sbjct: 137 WREFSLHPQLNRAVYAQKFSKPTPIQAEALP-LAMQGRDIVGVAETGSGKTLAYGLPILQ 195
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LL E A + G + +RALI+ PTRELALQV
Sbjct: 196 LLLTE----ASVSGTSGRPGRR-----PVRALILAPTRELALQV 230
>gi|302676285|ref|XP_003027826.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
gi|300101513|gb|EFI92923.1| hypothetical protein SCHCODRAFT_70633 [Schizophyllum commune H4-8]
Length = 651
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 19 AQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSI-LKARIPALAHQRKDVIG 77
A +E N + T + W LHP L+K++ F + T I A IPALA +DV+G
Sbjct: 63 AVDEEPNALDTPTSLEEWEPYALHPQLLKTLQARNFLKPTPIQAAALIPALAG--RDVVG 120
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
A+T SGKT A+GLP L LLE K+ GE K +RALI+ PTRELAL
Sbjct: 121 VAQTGSGKTLAYGLPILHHLLENPHKST-----TGE-------KRPVRALILAPTRELAL 168
Query: 138 QVLMVASPSLKSNS 151
QV + L +NS
Sbjct: 169 QVSSHLNACLNTNS 182
>gi|170595141|ref|XP_001902262.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158590158|gb|EDP28893.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 668
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ W L + ++K+I +GF E T I K IP+ R D+IGAAET SGKT AFG+
Sbjct: 149 DMSGWINLYISNAVLKAIADMGFTEPTEIQKLVIPSAVRDRFDIIGAAETGSGKTLAFGV 208
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P ++ LL + ++KG +RALI+ PTREL +Q+ LK
Sbjct: 209 PVVEHLLANQSFLESSEQKKG-----------IRALILAPTRELVMQIRNHIDALLKYTP 257
Query: 152 LTLAMAAG 159
+A G
Sbjct: 258 FKVASIVG 265
>gi|327302418|ref|XP_003235901.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
gi|326461243|gb|EGD86696.1| ATP-dependent RNA helicase MAK5 [Trichophyton rubrum CBS 118892]
Length = 746
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 23 LVNEA--EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++NEA E + AW+ L L P L S+ +L F + T I KA IP + R DVIG A
Sbjct: 155 ILNEANEEPDVDVSAWDSLDLRPELQTSLSRLKFAQPTPIQKATIPEILGGR-DVIGKAA 213
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFGLP LQ LL +E+ L + ++K ALI++PTRELA Q++
Sbjct: 214 TGSGKTLAFGLPILQYLLNRQEQHPSTLLALPKSSDKTP-----IALILSPTRELAHQLV 268
>gi|440796416|gb|ELR17525.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 926
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W LHP LM++I + F T I + + A + KDV+G AET SGKT A+GLP L
Sbjct: 256 SWQHFNLHPTLMEAIKEYKFFSPTPIQEKALTAALREDKDVVGVAETGSGKTLAYGLPIL 315
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L ++RE+ E G E ++ L+AL++ PTRELA+QV
Sbjct: 316 HKLTKKREQE----ERDGVEKDR-----RLKALLLAPTRELAVQV 351
>gi|340374409|ref|XP_003385730.1| PREDICTED: hypothetical protein LOC100639442 [Amphimedon
queenslandica]
Length = 1012
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 25/139 (17%)
Query: 34 DAWNELRLHPLLMKSIY-KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+AW+ L LH +++S+ +LGF T I + IP + + D+IGAAET SGKT AFGLP
Sbjct: 563 EAWSSLGLHDTIVRSLVDRLGFSTPTEIQQKAIPPAINGKHDIIGAAETGSGKTLAFGLP 622
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-MVASPSLKSNS 151
L +L R++ L ALI+ PTRELALQV+ + + + +N
Sbjct: 623 VLNYILTNRQR--------------------LVALILMPTRELALQVVEHIKAAAYYTNI 662
Query: 152 LTLAMAAGSPLLTSEHSNR 170
A+ G ++SE +R
Sbjct: 663 KVCAVVGG---MSSEKQDR 678
>gi|409076944|gb|EKM77312.1| hypothetical protein AGABI1DRAFT_43493, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 670
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 26/110 (23%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W LHP L+ ++Y+ GF+ TSI A IP +A + KDV+G A+T SGKT A+G+P L
Sbjct: 5 WASYSLHPQLLHALYRKGFESPTSIQAAAIP-VAVKGKDVVGVAQTGSGKTLAYGIPILH 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH------LRALIINPTRELALQV 139
LL + P+ H ++ALI+ PTRELALQV
Sbjct: 64 YLLSQ-------------------PRPHPNKRRPVKALILAPTRELALQV 94
>gi|322712774|gb|EFZ04347.1| ATP-dependent RNA helicase HAS1 [Metarhizium anisopliae ARSEF 23]
Length = 581
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
VG+ P D L AE D +++L+L MK+I ++GF + T+I + IP L
Sbjct: 86 VGDLPTDGAPILAPTAES----DMFDQLKLSEKTMKAITEMGFTKMTAIQRTAIPPLL-A 140
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDV+GAA+T SGKT AF +PA++ L A ++ P+ ++++P
Sbjct: 141 GKDVLGAAKTGSGKTLAFLIPAIEIL----------------SALRFKPRNGTGVIVVSP 184
Query: 132 TRELALQVLMVASPSLKSNSLTLAMAAG 159
TRELALQ+ VA ++ +S T + G
Sbjct: 185 TRELALQIFGVARELMQHHSQTYGIVIG 212
>gi|367036228|ref|XP_003667396.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
gi|347014669|gb|AEO62151.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 24/150 (16%)
Query: 10 VVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALA 69
+V GNGP L+ + ST+ +++EL L MK+I ++GF + T I + IP L
Sbjct: 98 IVKGNGP------LLGHSA-STDAQSFSELNLSEKTMKAIDEMGFTKMTEIQRRGIPPLL 150
Query: 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129
KDV+GAA+T SGKT AF +PA++ L A ++ P+ A+++
Sbjct: 151 AG-KDVLGAAKTGSGKTLAFLIPAVEML----------------SALRFKPRNGTGAIVV 193
Query: 130 NPTRELALQVLMVASPSLKSNSLTLAMAAG 159
PTRELALQ+ VA +K ++ T + G
Sbjct: 194 TPTRELALQIFGVARELMKHHTQTYGVVIG 223
>gi|322693567|gb|EFY85423.1| ATP-dependent RNA helicase MAK5 [Metarhizium acridum CQMa 102]
Length = 794
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L L P L+ +I KLGF + T+I + IP + DVIG A+T SGKT AFG+P ++
Sbjct: 215 WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIAG-GDVIGKAQTGSGKTLAFGIPIVE 273
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ LE RE+ ++G++ +K +G + A+I++PTRELA Q+
Sbjct: 274 KWLEMREEQEDQGGDRGDQPKKKNGEGPM-AVILSPTRELAKQI 316
>gi|302659739|ref|XP_003021557.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
gi|291185460|gb|EFE40939.1| hypothetical protein TRV_04404 [Trichophyton verrucosum HKI 0517]
Length = 746
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 23 LVNEA--EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++NEA E + AW+ L L P L S+ + F + T I KA IP + R DVIG A
Sbjct: 155 VLNEANDEADVDVSAWDSLDLRPELQTSLSRFKFAQPTPIQKATIPEILGGR-DVIGKAA 213
Query: 81 TESGKTRAFGLPALQRLL---EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
T SGKT AFGLP LQ LL E+R + L + G++ ALI++PTRELA
Sbjct: 214 TGSGKTLAFGLPILQYLLNRQEQRPSTSLTLSKSGDKKPV--------ALILSPTRELAH 265
Query: 138 QVL 140
Q++
Sbjct: 266 QLV 268
>gi|392589213|gb|EIW78544.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 740
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W +LHP L++ ++ FK T I +P A KD++G AET SGKT A+GLP L
Sbjct: 134 SWRPFKLHPHLLQVLHSKNFKSPTPIQSNSLPK-AIAGKDIVGVAETGSGKTLAYGLPIL 192
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q +L E + K LRAL+I PTRELALQV
Sbjct: 193 QHILTSPRPVLS--------TESGSSKRQLRALVITPTRELALQV 229
>gi|392573357|gb|EIW66497.1| hypothetical protein TREMEDRAFT_65359 [Tremella mesenterica DSM
1558]
Length = 744
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D ++ L +EA T W+ + LHP+L +S+ KLGF + T I +AR + +DV+G
Sbjct: 137 DQEDHLGDEAFDDTLLPQWSSIPLHPILKRSLSKLGFTKPTDI-QARALPVCLAGRDVVG 195
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
AET SGKT A+ LP L LL K L +LI+ PTRELAL
Sbjct: 196 VAETGSGKTLAYALPILSYLLRNPRATTS--------------KRTLSSLILCPTRELAL 241
Query: 138 QVL 140
QV+
Sbjct: 242 QVV 244
>gi|302510172|ref|XP_003017046.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
gi|291180616|gb|EFE36401.1| hypothetical protein ARB_05340 [Arthroderma benhamiae CBS 112371]
Length = 746
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 14/123 (11%)
Query: 23 LVNEA--EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++NEA E + AW+ L L P L S+ +L F + T I KA IP + R DVIG A
Sbjct: 155 VLNEANEEADIDVSAWDSLDLRPELQTSLSRLRFAQPTPIQKATIPEILGGR-DVIGKAA 213
Query: 81 TESGKTRAFGLPALQRLL---EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
T SGKT AFGLP LQ LL E+R + L + G++ ALI++PTRELA
Sbjct: 214 TGSGKTLAFGLPILQCLLNRQEQRPSTSLALSKSGDKKPI--------ALILSPTRELAH 265
Query: 138 QVL 140
Q++
Sbjct: 266 QLV 268
>gi|189201219|ref|XP_001936946.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984045|gb|EDU49533.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 778
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 22/129 (17%)
Query: 11 VVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAH 70
++ N PDD E++ AW+EL L ++ ++ KL F + T+I K+ IP +
Sbjct: 196 ILANQPDDDDEDV----------SAWDELELSEEMLGALAKLKFSKPTTIQKSTIPEILA 245
Query: 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130
R DVIG A T SGKT AFG+P ++ L R A+K E E P ALII
Sbjct: 246 GR-DVIGKASTGSGKTLAFGIPIVESYLASRSSASK-------EPEDKMPI----ALIIA 293
Query: 131 PTRELALQV 139
PTRELA Q+
Sbjct: 294 PTRELAHQI 302
>gi|32564046|ref|NP_871838.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
gi|351063670|emb|CCD71884.1| Protein F55F8.2, isoform b [Caenorhabditis elegans]
Length = 579
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 49 IYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108
I+ F E T I A +PA R+DV+GAAET SGKT AFG+P + RLLE + +
Sbjct: 3 IFFFRFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDS---- 58
Query: 109 EEKGEEAEKYAPKGHLRALIINPTRELALQVL-----MVASPSLKSNSLTLAMA 157
++ E E P RALI+ PTREL +Q++ ++++ L + S+ +A
Sbjct: 59 -QETESTEVRGP----RALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLA 107
>gi|324502072|gb|ADY40913.1| ATP-dependent RNA helicase DDX24 [Ascaris suum]
Length = 790
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+ AW L +MK++ LGF + T I K +P+ + DV+GAAET SGKT A+
Sbjct: 221 VDLSAWMPFCLPDEIMKALADLGFTKPTEIQKLVLPSAVRDKLDVLGAAETGSGKTLAYA 280
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+P + RLL+ + E + + HLRALI+ PTREL +Q+
Sbjct: 281 IPLIVRLLDAQNS-----------MEDWTLQRHLRALILAPTRELVVQI 318
>gi|308498215|ref|XP_003111294.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
gi|308240842|gb|EFO84794.1| hypothetical protein CRE_03826 [Caenorhabditis remanei]
Length = 761
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 33/149 (22%)
Query: 31 TEFDAWNELRLHP-LLMKSIYKLGF----------------KESTSILKARIPALAHQRK 73
T+ AW + P +++++ ++GF E T I A +P +
Sbjct: 151 TDISAWKQFFFLPNEILQAVEQMGFVSCAELTKLSKFLFSFSEPTPIQSAVLPVAVRDHQ 210
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DV+GAAET SGKT AFG+P + RLLE E EE E P RAL+I PTR
Sbjct: 211 DVLGAAETGSGKTLAFGIPIVARLLESSA-------ENDEEEEFKGP----RALVIAPTR 259
Query: 134 ELALQVL-----MVASPSLKSNSLTLAMA 157
EL +Q++ ++A SLK+ S+ +A
Sbjct: 260 ELVIQIMRHITALIAPTSLKATSIVGGLA 288
>gi|328872649|gb|EGG21016.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 909
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q+ + EA + + W L PL++K + LG++ T I IPA D+IGAA
Sbjct: 236 QDRIAPEAADTLDMTVWESYNLDPLIIKGLRALGYERPTEIQSQVIPASIQSGNDIIGAA 295
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA---------PKGH--LRALI 128
ET SGKT AFG+P + +L K L +GE+ + H L AL+
Sbjct: 296 ETGSGKTLAFGIPMVNTIL-------KYLRAQGEDVTRSTLPQVGLLKKDNSHKKLLALV 348
Query: 129 INPTRELALQV 139
+ PTRELA+QV
Sbjct: 349 LCPTRELAIQV 359
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 10/128 (7%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L LHP L+K++ +LG+ T + + IP LA + DV+ A+T +GKT AF LP L
Sbjct: 2 SFQSLNLHPNLLKALTELGYSTPTDVQQQAIP-LALKGDDVMAGAQTGTGKTAAFALPLL 60
Query: 95 QRLL---EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
QRL+ + E+ + +E + + ++RALI+ PTRELA QV + K
Sbjct: 61 QRLMTLPSQAEQVSTAIE------NNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTE 114
Query: 152 LTLAMAAG 159
+ +A+A G
Sbjct: 115 IKVAVAYG 122
>gi|401839179|gb|EJT42502.1| HAS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 505
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q + E E + + + EL+L +K+I KLGF TS+ IP L R DV+GAA
Sbjct: 28 QSDAATEGETAAYVEKFEELKLSQPTLKAIEKLGFTTMTSVQSRTIPPLLAGR-DVLGAA 86
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+T SGKT AF +PA++ L + K+ P+ ++I PTRELALQ+
Sbjct: 87 KTGSGKTLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPTRELALQI 130
Query: 140 LMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
VA ++ +S T + G +NRR+
Sbjct: 131 FGVARELMEFHSQTFGIVIGG-------ANRRQ 156
>gi|345318725|ref|XP_003430052.1| PREDICTED: probable ATP-dependent RNA helicase ddx27-like, partial
[Ornithorhynchus anatinus]
Length = 571
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W+E +LH L++K I++LGF T I IP +A + D+I +ET SGKT AF +P +
Sbjct: 173 SWSEFKLHRLILKGIFELGFSYPTKIQCEVIP-VALRGLDIIATSETGSGKTAAFLIPLV 231
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV-----ASPSLKS 149
QRLL ++ + G K+A ++AL++ PTREL Q V S++S
Sbjct: 232 QRLLASCSLRHQIRQNYG----KHAVYNEVKALVLFPTRELTSQCYAVFLKLTTYVSVES 287
Query: 150 NSLTLAMAAGSPLLTSEHSNRRKP 173
+ LT G PL E R P
Sbjct: 288 SMLT----GGIPLKEQEAQLRCAP 307
>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+LRL L++++ ++GF T I +AR LA KD+ AA+T SGKT A+ LP L
Sbjct: 171 SFNQLRLSRPLLRAVNEMGFTTPTPI-QARCIPLALAGKDICAAAKTGSGKTAAYLLPIL 229
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+RLL K + +R LI+ PTRELA QV +A+ K S+T
Sbjct: 230 ERLL-----------------YKNNAQNLIRVLIVAPTRELAQQVHTIATKLTKYTSITC 272
Query: 155 AMAAGS-PLLTSEHSNRRKPN 174
+ G PL +R+P+
Sbjct: 273 CLVVGGLPLQAQAVDLQRRPD 293
>gi|400596806|gb|EJP64562.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 576
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 17/125 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL+L MK+I ++GF + TSI K+ IP L KDV+GAA+T SGKT AF +PA+
Sbjct: 101 SFDELKLSEKTMKAIKEMGFTKMTSIQKSAIPPLM-AGKDVLGAAKTGSGKTLAFLIPAI 159
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + ++ P+ ++++PTRELALQ+ VA +K +S T
Sbjct: 160 EIL----------------SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMKHHSQTY 203
Query: 155 AMAAG 159
+ G
Sbjct: 204 GIVMG 208
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 64/116 (55%), Gaps = 15/116 (12%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
+ A S E + + LHPLL+KSI + G+ T I IP +A R DV+GAA+T +G
Sbjct: 6 SSAAPSAEALTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGR-DVMGAAQTGTG 64
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
KT AF LP L RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 65 KTAAFTLPILHRLMPLANSSA-------------SPARHPVRALILTPTRELADQV 107
>gi|255711788|ref|XP_002552177.1| KLTH0B08998p [Lachancea thermotolerans]
gi|238933555|emb|CAR21739.1| KLTH0B08998p [Lachancea thermotolerans CBS 6340]
Length = 492
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P MK+I K+GF T + IP L R DV+GAA+T SGKT AF LPA++
Sbjct: 30 FAELNLSPPTMKAIDKMGFTTMTQVQSRTIPPLLAGR-DVLGAAKTGSGKTLAFLLPAIE 88
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 89 ML----------------HSLKFKPRNGTGVIVITPTRELALQIFGVAKTLMEFHSQTFG 132
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 133 IVIGG-------ANRRQ 142
>gi|116205599|ref|XP_001228610.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|118572553|sp|Q2GMX1.1|HAS1_CHAGB RecName: Full=ATP-dependent RNA helicase HAS1
gi|88176811|gb|EAQ84279.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 586
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ST+ A++EL L M SI ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 107 VSTDAQAFSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAG-KDVLGAAKTGSGKTLA 165
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ +++ PTRELALQ+ VA +K
Sbjct: 166 FLIPAIEML----------------NSLRFKPRNGTGVIVVTPTRELALQIFGVARELMK 209
Query: 149 SNSLTLAMAAG 159
++S T + G
Sbjct: 210 NHSQTYGVVIG 220
>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
Length = 719
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
+ + AW L + ++K++ +L F + I + IP ++D++GAAET SGKT AF
Sbjct: 159 TVDMSAWQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAF 218
Query: 90 GLPALQRLLEEREK-------AAKMLEE-------------KGEEAEKYAPKGHLRALII 129
G+P L L+E+RE+ A++ E+ EE E+ P L AL++
Sbjct: 219 GIPLLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVSKEEIEETQPTKALPALVL 278
Query: 130 NPTRELALQV 139
PTRELA+QV
Sbjct: 279 TPTRELAIQV 288
>gi|322698059|gb|EFY89832.1| ATP-dependent RNA helicase HAS1 [Metarhizium acridum CQMa 102]
Length = 581
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
VG+ P D L AE D +++L+L MK+I ++GF + T+I + IP L
Sbjct: 86 VGDLPADGAPILPPTAES----DMFDQLKLSEKTMKAINEMGFTKMTAIQRTAIPPLL-A 140
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDV+GAA+T SGKT AF +PA++ L A ++ P+ ++++P
Sbjct: 141 GKDVLGAAKTGSGKTLAFLIPAIEIL----------------SALRFKPRNGTGVIVVSP 184
Query: 132 TRELALQVLMVASPSLKSNSLTLAMAAG 159
TRELALQ+ VA ++ +S T + G
Sbjct: 185 TRELALQIFGVARELMQHHSQTYGIVIG 212
>gi|397573945|gb|EJK48944.1| hypothetical protein THAOC_32221 [Thalassiosira oceanica]
Length = 980
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 9/121 (7%)
Query: 25 NEAEISTEFDAWN----ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
+EA +++ W+ + LH L + ++ L + T I + +PA R+D++GAA
Sbjct: 234 DEAAVASLQTTWSISAPGVTLHETLSRGLHSLKYSYPTPIQASTLPAAILGRRDIVGAAP 293
Query: 81 TESGKTRAFGLPALQRLLEEREKAA--KMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
T SGKT ++GLP LQ LL+ER+ +A E + P L+ALI+ PTRELALQ
Sbjct: 294 TGSGKTLSYGLPILQYLLDERDASASRSCGVATPESTRERLP---LQALILTPTRELALQ 350
Query: 139 V 139
V
Sbjct: 351 V 351
>gi|254565179|ref|XP_002489700.1| ATP-dependent RNA helicase [Komagataella pastoris GS115]
gi|238029496|emb|CAY67419.1| ATP-dependent RNA helicase [Komagataella pastoris GS115]
gi|328350119|emb|CCA36519.1| ATP-dependent RNA helicase DDX18 [Komagataella pastoris CBS 7435]
Length = 546
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 17/130 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
ST ++ + +L+L +K+I +GF + T++ IP L R DV+GAA+T SGKT AF
Sbjct: 80 STVYENFTDLKLSEPTLKAIGNMGFTKMTAVQARTIPPLLAGR-DVLGAAKTGSGKTLAF 138
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
+PA++ L + K+ P+ A++I PTRELALQ+ VA ++S
Sbjct: 139 LIPAIEMLY----------------SLKFKPRNGTGAIVITPTRELALQIFGVARELMES 182
Query: 150 NSLTLAMAAG 159
+S T + G
Sbjct: 183 HSQTFGILIG 192
>gi|304312547|ref|YP_003812145.1| ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1]
gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
HdN1]
Length = 716
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 14/124 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L P L K I +LGF T I +P L+ +++D+IG A+T +GKT AF + +Q
Sbjct: 266 FSALALDPRLQKGIDELGFSHCTPIQSEALP-LSLKQRDIIGKAQTGTGKTAAFLITIIQ 324
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL E E+ E+Y G RALI+ PTRELALQ+ A P LK SL +
Sbjct: 325 TLLTE-----------PEQEERY--NGEPRALILAPTRELALQIEKDALPLLKHTSLNMV 371
Query: 156 MAAG 159
G
Sbjct: 372 SIVG 375
>gi|189239044|ref|XP_969373.2| PREDICTED: similar to CG9143 CG9143-PA [Tribolium castaneum]
Length = 645
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S + W+ L ++K++ GF E T I +PA R+D++GAAET SGKT AF
Sbjct: 97 SDSYLVWSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAF 156
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
GLP + +L E+ K ++K L AL++ PTRELA+QV +K
Sbjct: 157 GLPIVAGILNEKSKVVGNSDKK------------LYALVLTPTRELAVQVRDHLKAIVKF 204
Query: 150 NSLTLAMAAG 159
+ +A+ G
Sbjct: 205 TDINIAVVLG 214
>gi|452989521|gb|EME89276.1| hypothetical protein MYCFIDRAFT_185631 [Pseudocercospora fijiensis
CIRAD86]
Length = 723
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 63/118 (53%), Gaps = 19/118 (16%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
NE T+ AW L+L P M S+ KL F T I +A IP + DVIG A T SG
Sbjct: 138 NEDAADTDVSAWMPLKLSPDTMASLSKLKFSNPTPIQEAAIPKI-FAGHDVIGKASTGSG 196
Query: 85 KTRAFGLPALQRLLE---EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+R LE EREK E+ P ALI++PTRELA Q+
Sbjct: 197 KTLAFGIPILERFLEKISEREK-----------LEQSTPI----ALILSPTRELAHQL 239
>gi|270010898|gb|EFA07346.1| hypothetical protein TcasGA2_TC015943 [Tribolium castaneum]
Length = 599
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S + W+ L ++K++ GF E T I +PA R+D++GAAET SGKT AF
Sbjct: 95 SDSYLVWSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAF 154
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
GLP + +L E+ K ++K L AL++ PTRELA+QV +K
Sbjct: 155 GLPIVAGILNEKSKVVGNSDKK------------LYALVLTPTRELAVQVRDHLKAIVKF 202
Query: 150 NSLTLAMAAG 159
+ +A+ G
Sbjct: 203 TDINIAVVLG 212
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L LHP L+K++ LG+ T + + IP LA + DV+ A+T +GKT AF LP L
Sbjct: 2 SFQSLNLHPNLLKALTDLGYSTPTDVQQQAIP-LALKGDDVMAGAQTGTGKTAAFTLPLL 60
Query: 95 QRLL---EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
QRL+ + E+ + +E + K +RALI+ PTRELA QV + K
Sbjct: 61 QRLMTLPSQAEQVSTAVENNQKSRNK------IRALILTPTRELAQQVFDSITTYAKYTE 114
Query: 152 LTLAMAAG 159
+ +A+A G
Sbjct: 115 IKVAVAYG 122
>gi|254581554|ref|XP_002496762.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
gi|238939654|emb|CAR27829.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
Length = 494
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 26/158 (16%)
Query: 17 DDAQEELVNEAEISTE--FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
++A+E V + E S+E + EL L +K+I K+GF TS+ IP L R D
Sbjct: 11 EEAEENDVEQHEESSEKLSQTFGELELSQPTLKAIDKMGFTTMTSVQARTIPPLLAGR-D 69
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
V+GAA+T SGKT AF +PA++RL + K+ P+ ++I PTRE
Sbjct: 70 VLGAAKTGSGKTLAFLIPAIERL----------------HSLKFKPRNGTGVIVITPTRE 113
Query: 135 LALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
LALQ+ VA ++ +S T + G +NRR+
Sbjct: 114 LALQIFGVARELMEFHSQTFGIVIGG-------ANRRQ 144
>gi|452848186|gb|EME50118.1| hypothetical protein DOTSEDRAFT_165107 [Dothistroma septosporum
NZE10]
Length = 743
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 13/119 (10%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E+ +EAE S + AW L+L P M S+ KL F + T + +A IP + + DV+G A
Sbjct: 148 EDAGDEAE-SVDVSAWRSLKLSPDTMASLSKLKFSKPTPVQQAVIPEVLNGH-DVVGKAS 205
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT AFG+P L+R L E AA+ K + E AP ALI++PTRELA Q+
Sbjct: 206 TGSGKTFAFGIPILERYL---EAAAR----KSRKGEGKAP----LALILSPTRELAHQL 253
>gi|405124025|gb|AFR98787.1| ATP-dependent RNA helicase MAK5 [Cryptococcus neoformans var.
grubii H99]
Length = 771
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ + LHP L +S F T+I IPA R DV+G AET SGKT A+ LP L
Sbjct: 173 WSSIPLHPALKRSFLASSFTAPTAIQSRAIPAGVTGR-DVVGVAETGSGKTLAYSLPILH 231
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
LL +R++ A + K L ALI+ PTRELALQV+
Sbjct: 232 YLLAQRKRKAGI-------------KRPLSALILCPTRELALQVM 263
>gi|6323947|ref|NP_014017.1| ATP-dependent RNA helicase HAS1 [Saccharomyces cerevisiae S288c]
gi|2500537|sp|Q03532.1|HAS1_YEAST RecName: Full=ATP-dependent RNA helicase HAS1; AltName:
Full=Helicase associated with SET1 protein 1
gi|530347|emb|CAA56799.1| RNA helicase [Saccharomyces cerevisiae]
gi|151945998|gb|EDN64230.1| helicase associated with set1 [Saccharomyces cerevisiae YJM789]
gi|190408516|gb|EDV11781.1| RNA-dependent helicase [Saccharomyces cerevisiae RM11-1a]
gi|207342060|gb|EDZ69940.1| YMR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270688|gb|EEU05851.1| Has1p [Saccharomyces cerevisiae JAY291]
gi|259148878|emb|CAY82123.1| Has1p [Saccharomyces cerevisiae EC1118]
gi|285814296|tpg|DAA10191.1| TPA: ATP-dependent RNA helicase HAS1 [Saccharomyces cerevisiae
S288c]
gi|323346981|gb|EGA81258.1| Has1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353213|gb|EGA85513.1| Has1p [Saccharomyces cerevisiae VL3]
gi|349580582|dbj|GAA25742.1| K7_Has1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297463|gb|EIW08563.1| Has1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 505
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 24/147 (16%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E E +T + + EL+L +K+I K+GF TS+ IP L R DV+GAA+T SGK
Sbjct: 34 EGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGR-DVLGAAKTGSGK 92
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145
T AF +PA++ L + K+ P+ ++I PTRELALQ+ VA
Sbjct: 93 TLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPTRELALQIFGVARE 136
Query: 146 SLKSNSLTLAMAAGSPLLTSEHSNRRK 172
++ +S T + G +NRR+
Sbjct: 137 LMEFHSQTFGIVIGG-------ANRRQ 156
>gi|323332194|gb|EGA73605.1| Has1p [Saccharomyces cerevisiae AWRI796]
Length = 505
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 24/147 (16%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E E +T + + EL+L +K+I K+GF TS+ IP L R DV+GAA+T SGK
Sbjct: 34 EGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGR-DVLGAAKTGSGK 92
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145
T AF +PA++ L + K+ P+ ++I PTRELALQ+ VA
Sbjct: 93 TLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPTRELALQIFGVARE 136
Query: 146 SLKSNSLTLAMAAGSPLLTSEHSNRRK 172
++ +S T + G +NRR+
Sbjct: 137 LMEFHSQTFGIVIGG-------ANRRQ 156
>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
crispatus CTV-05]
gi|423319650|ref|ZP_17297525.1| hypothetical protein HMPREF9250_01958 [Lactobacillus crispatus
FB049-03]
gi|423320328|ref|ZP_17298200.1| hypothetical protein HMPREF9249_00200 [Lactobacillus crispatus
FB077-07]
gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
crispatus CTV-05]
gi|405587866|gb|EKB61589.1| hypothetical protein HMPREF9250_01958 [Lactobacillus crispatus
FB049-03]
gi|405606281|gb|EKB79274.1| hypothetical protein HMPREF9249_00200 [Lactobacillus crispatus
FB077-07]
Length = 495
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -MIDKKEKA-------------------IQAVIIEPTRELAIQ 84
>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
125-2-CHN]
gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
125-2-CHN]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -MIDKKEKA-------------------IQAVIIEPTRELAIQ 84
>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
JV-V01]
gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
MV-1A-US]
gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
JV-V01]
gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
MV-1A-US]
gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
Length = 495
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -MIDKKEKA-------------------IQAVIIEPTRELAIQ 84
>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
98AG31]
Length = 659
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 20/131 (15%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ TEF + N L P K+I ++GFK T + IP L R DV+GAA T SGKT A
Sbjct: 125 LVTEFTSLN---LSPGTAKAIEEMGFKHMTEVQARTIPPLMTGR-DVLGAARTGSGKTLA 180
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L ++ P+ A+I++PTRELALQ+ VA +K
Sbjct: 181 FLVPAVEML----------------SRLQFKPRNGTGAIIVSPTRELALQIFGVAQELMK 224
Query: 149 SNSLTLAMAAG 159
+S T A+ G
Sbjct: 225 HHSQTFAITIG 235
>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -MIDKKEKA-------------------IQAVIIEPTRELAIQ 84
>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -MIDKKEKA-------------------IQAVIIEPTRELAIQ 84
>gi|85091492|ref|XP_958928.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
gi|74696328|sp|Q7S2N9.1|HAS1_NEUCR RecName: Full=ATP-dependent RNA helicase has-1
gi|28920320|gb|EAA29692.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
Length = 578
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
I+T ++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 102 IATNATDFSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLA 160
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ A+++ PTRELALQ+ VA +K
Sbjct: 161 FLIPAIEML----------------SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMK 204
Query: 149 SNSLTLAMAAG 159
++S T + G
Sbjct: 205 NHSQTYGVVIG 215
>gi|320165920|gb|EFW42819.1| ATP-dependent RNA helicase DDX24 [Capsaspora owczarzaki ATCC 30864]
Length = 1137
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T+ WN LH LL+K + G+ T I + + +D+IGA+ET SGKT AF
Sbjct: 429 TDMSEWNGFGLHELLIKGLATAGYARPTPIQREALLKGLRDYQDIIGASETGSGKTLAFA 488
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAE--------KYAPKGHLRALIINPTRELALQV 139
LP LQ +L R+K A + G++ E K L ALI+ PTRELA Q+
Sbjct: 489 LPILQVILNGRDKEAARESQNGDDNEAETDAASKKVFKNRPLSALILTPTRELASQI 545
>gi|346471193|gb|AEO35441.1| hypothetical protein [Amblyomma maculatum]
Length = 684
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 10/126 (7%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+G DD+ + V + + AW + +++++ +L F E T I +PA
Sbjct: 97 DGTDDSSPD-VPKVSRCDDMSAWLNCYVPEQVLRALAELKFTEPTEIQAQTLPAAIRDHM 155
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D++GAAET SGKT AFG+P L ++E + L + E A + P L+AL++ PTR
Sbjct: 156 DIMGAAETGSGKTLAFGIPLLHHIMERK------LRQPEECASQAMP---LQALVLTPTR 206
Query: 134 ELALQV 139
ELA+QV
Sbjct: 207 ELAIQV 212
>gi|367016289|ref|XP_003682643.1| hypothetical protein TDEL_0G00650 [Torulaspora delbrueckii]
gi|359750306|emb|CCE93432.1| hypothetical protein TDEL_0G00650 [Torulaspora delbrueckii]
Length = 485
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 27/154 (17%)
Query: 19 AQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGA 78
A+EE + ++ EF N L MK++ K+GF T + IP L R DV+GA
Sbjct: 9 AEEESMENDDVVEEFSGLN---LSDATMKAVEKMGFSSMTPVQARTIPPLLAGR-DVLGA 64
Query: 79 AETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
A+T SGKT AF +PA++RL + K+ P+ ++I PTRELALQ
Sbjct: 65 AKTGSGKTLAFLIPAIERL----------------HSLKFKPRNGTGVIVITPTRELALQ 108
Query: 139 VLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
+ VA ++ +S T + G +NRR+
Sbjct: 109 IFGVARELMEFHSQTYGIVIGG-------ANRRQ 135
>gi|443922417|gb|ELU41869.1| delta-sterol C-methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 1600
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W + LHP++ S+ +L F T I K+ +P A Q +DV+G AET SGKT A+ LP LQ
Sbjct: 137 WASMSLHPIISHSLLELSFTNPTPIQKSALP-FAQQGRDVVGVAETGSGKTLAYSLPILQ 195
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+L + L ALI+ PTRELALQV
Sbjct: 196 YILSNPTSNSSR---------------KLAALILAPTRELALQVC 225
>gi|19115400|ref|NP_594488.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1351666|sp|Q09916.1|HAS1_SCHPO RecName: Full=ATP-dependent RNA helicase has1
gi|1067204|emb|CAA91949.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
pombe]
Length = 578
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
A +++ + +++L+L + K+I ++GF+ T I K IP L R DV+GAA+T SGKT
Sbjct: 82 ASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGR-DVLGAAKTGSGKT 140
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AF +P ++ L A K+ P+ +II+PTRELALQ+ VA
Sbjct: 141 LAFLIPTIEMLY----------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL 184
Query: 147 LKSNSLTLAMAAG 159
LK + T + G
Sbjct: 185 LKYHHQTFGIVIG 197
>gi|336467939|gb|EGO56102.1| ATP-dependent RNA helicase has-1 [Neurospora tetrasperma FGSC 2508]
gi|350289823|gb|EGZ71048.1| ATP-dependent RNA helicase has-1 [Neurospora tetrasperma FGSC 2509]
Length = 578
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
I+T ++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 102 IATNATDFSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLA 160
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ A+++ PTRELALQ+ VA +K
Sbjct: 161 FLIPAIEML----------------SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMK 204
Query: 149 SNSLTLAMAAG 159
++S T + G
Sbjct: 205 NHSQTYGVVIG 215
>gi|440490575|gb|ELQ70119.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae P131]
Length = 578
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+E A++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT AF
Sbjct: 109 SEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAG-KDVLGAAKTGSGKTLAFL 167
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
+PA++ L + K+ P+ ++++PTRELALQ+ VA +K +
Sbjct: 168 IPAVEML----------------RSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHH 211
Query: 151 SLTLAMAAG 159
S T + G
Sbjct: 212 SQTYGIVIG 220
>gi|255729782|ref|XP_002549816.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132885|gb|EER32442.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 571
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 11/105 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W+E ++ L+ IYKLGF + TSI +A IP L+ ++DV+G AET SGKT +F +P
Sbjct: 159 SWDESSINSKLISIIYKLGFNQPTSIQRASIP-LSLIKRDVVGVAETGSGKTLSFLIPLF 217
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L E K E P G LI+ PTRELA+Q+
Sbjct: 218 NYILSIDENYIKY------EKSLNMPMG----LILAPTRELAIQI 252
>gi|389638792|ref|XP_003717029.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
gi|152032523|sp|A4R8B5.2|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
gi|351642848|gb|EHA50710.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
Length = 587
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+E A++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT AF
Sbjct: 109 SEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAG-KDVLGAAKTGSGKTLAFL 167
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
+PA++ L + K+ P+ ++++PTRELALQ+ VA +K +
Sbjct: 168 IPAVEML----------------RSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHH 211
Query: 151 SLTLAMAAG 159
S T + G
Sbjct: 212 SQTYGIVIG 220
>gi|367006540|ref|XP_003688001.1| hypothetical protein TPHA_0L02160 [Tetrapisispora phaffii CBS 4417]
gi|357526307|emb|CCE65567.1| hypothetical protein TPHA_0L02160 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 24/139 (17%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+++ +L+L MK+I K+GF+ T + IP L R DV+GAA+T SGKT AF LPA
Sbjct: 34 ESFADLKLSEPTMKAIEKMGFENMTPVQARTIPPLLAGR-DVLGAAKTGSGKTLAFLLPA 92
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + KY P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 93 IEML----------------HSLKYKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT 136
Query: 154 LAMAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 137 FGIVIGG-------ANRRQ 148
>gi|313238237|emb|CBY13329.1| unnamed protein product [Oikopleura dioica]
Length = 598
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 18/128 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L L+++I LGFK T I + IP + +K ++GAAET SGKT A+GLP LQ
Sbjct: 142 WRRFNLDVALLRAIDSLGFKSPTDIQRQCIPKGLNSKKTILGAAETGSGKTIAYGLPILQ 201
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV-----LMVASPSLKSN 150
+++ + + E + P+ ALI+ PTRELA+QV L+ S+K+
Sbjct: 202 KIIGYLDFS---------EEKTVGPQ----ALILCPTRELAMQVHDSIRLVSKFTSVKTT 248
Query: 151 SLTLAMAA 158
++ MAA
Sbjct: 249 AIVGGMAA 256
>gi|410076008|ref|XP_003955586.1| hypothetical protein KAFR_0B01520 [Kazachstania africana CBS 2517]
gi|372462169|emb|CCF56451.1| hypothetical protein KAFR_0B01520 [Kazachstania africana CBS 2517]
Length = 496
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 26/160 (16%)
Query: 15 GPDDA--QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
G D++ Q+++V ++ S + + EL L +K+I K+GF + T + IP L R
Sbjct: 13 GADESTIQKQIVTDSTESDVVETFKELNLSQPTLKAIDKMGFTKMTPVQARTIPPLMAGR 72
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
DV+GAA+T SGKT AF LPA++ L + K+ P+ ++I PT
Sbjct: 73 -DVLGAAKTGSGKTLAFLLPAIEML----------------HSLKFKPRNGTGVIVITPT 115
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
RELALQ+ V ++ +S T + G +NRR+
Sbjct: 116 RELALQIFGVVRELMEFHSQTFGIVIGG-------ANRRQ 148
>gi|367055746|ref|XP_003658251.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
gi|347005517|gb|AEO71915.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
Length = 594
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ST ++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 115 VSTNAQEFSELGLSEKTMKAIAEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLA 173
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ A+++ PTRELALQ+ VA +K
Sbjct: 174 FLIPAVEML----------------SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMK 217
Query: 149 SNSLTLAMAAG 159
++S T + G
Sbjct: 218 NHSQTYGVVIG 228
>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
[Desulfurispirillum indicum S5]
gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
S5]
Length = 488
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 20/110 (18%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S+ D++ L L ++++ + GF++ TSI KA IP + HQ DV+G A+T +GKT AF
Sbjct: 4 SSPVDSFESLGLSAQTLQALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAF 63
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GLP ++ + ER + ++ALI+ PTRELALQV
Sbjct: 64 GLPIIETVKPERRQ--------------------IQALILTPTRELALQV 93
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 22/111 (19%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRA 88
+T F +++ L + P L++++ K GF E T+I IP ALA +DV+G A+T +GKT A
Sbjct: 3 TTAFTSFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAG--RDVLGCAQTGTGKTAA 60
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
F +P L+RL PKG RALI+ PTRELA+Q+
Sbjct: 61 FVIPMLERL-------------------SGTPKGQPRALILAPTRELAIQI 92
>gi|395323772|gb|EJF56229.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ +LHP L +++Y F T I +P LA + KDV+G AET SGKT A+GLP L
Sbjct: 132 WHSFKLHPQLARALYAKKFTTPTPIQAQTLP-LALKNKDVVGVAETGSGKTLAYGLPILH 190
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LL E + +RAL++ PTRELALQV
Sbjct: 191 YLLT---------EAYSRPIPSNKTRRPVRALVLAPTRELALQV 225
>gi|440476300|gb|ELQ44912.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae Y34]
Length = 864
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+E A++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT AF
Sbjct: 109 SEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLAFL 167
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
+PA++ L + K+ P+ ++++PTRELALQ+ VA +K +
Sbjct: 168 IPAVEML----------------RSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHH 211
Query: 151 SLTLAMAAG 159
S T + G
Sbjct: 212 SQTYGIVIG 220
>gi|336265007|ref|XP_003347278.1| hypothetical protein SMAC_08715 [Sordaria macrospora k-hell]
gi|380087768|emb|CCC05223.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 586
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
I+T ++EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 109 IATNATDFSELNLSEKTMKAIAEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLA 167
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ A+++ PTRELALQ+ VA +K
Sbjct: 168 FLIPAIEML----------------SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMK 211
Query: 149 SNSLTLAMAAG 159
++S T + G
Sbjct: 212 NHSQTYGVVIG 222
>gi|385813078|ref|YP_005849471.1| DEAD/DEAH box helicase [Lactobacillus helveticus H10]
gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
H10]
Length = 499
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++++EKA ++A+II PTRELA+Q
Sbjct: 62 S-IDKKEKA-------------------IQAIIIEPTRELAIQ 84
>gi|401626153|gb|EJS44112.1| has1p [Saccharomyces arboricola H-6]
Length = 505
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
Q + E +T + + EL+L +K+I K+GF TS+ IP L R DV+GAA
Sbjct: 28 QNDAATEVGETTYVEKFEELKLSEPTLKAIEKMGFSTMTSVQSRTIPPLLAGR-DVLGAA 86
Query: 80 ETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+T SGKT AF +PA++ L + K+ P+ ++I PTRELALQ+
Sbjct: 87 KTGSGKTLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPTRELALQI 130
Query: 140 LMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
VA ++ +S T + G +NRR+
Sbjct: 131 FGVARELMEFHSQTFGIVIGG-------ANRRQ 156
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHPLL+KSI G+ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 19 FADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 78 RLMPLANTSA-------------SPARHPVRALILTPTRELADQV 109
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHPLL++SI + G+ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 19 FTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 78 RLMPLANTSA-------------SPARHPVRALILTPTRELADQV 109
>gi|315040650|ref|XP_003169702.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
gi|311345664|gb|EFR04867.1| ATP-dependent RNA helicase MAK5 [Arthroderma gypseum CBS 118893]
Length = 743
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V + P E V EA++ + AW+ L L L S+ +L F + T I KA IP +
Sbjct: 145 VQSIPFSILTEAVEEADV--DVSAWDTLDLRSELQTSLSRLKFAQPTPIQKAAIPEILAG 202
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
R DVIG A T SGKT AFGLP LQ LL+ +E+ + K ALI++P
Sbjct: 203 R-DVIGKAATGSGKTLAFGLPILQYLLDRQEQHPSTPSTSSKSHGKTP-----TALILSP 256
Query: 132 TRELALQVL 140
TRELA Q++
Sbjct: 257 TRELAHQLV 265
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L P LMK++ K+GF+E+T I A IP L+ Q +DVIG A+T +GKT AFG+P ++
Sbjct: 7 FNEFGLSPELMKAVSKMGFEEATPIQAATIP-LSLQNRDVIGQAQTGTGKTAAFGIPLIE 65
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +A ++A+++ PTRELA+QV
Sbjct: 66 KI------------DMNNDA--------VQAIVVAPTRELAIQV 89
>gi|403416563|emb|CCM03263.1| predicted protein [Fibroporia radiculosa]
Length = 669
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ LHP L +++Y F T I +P LA + +D++G AET SGKT A+GLP L
Sbjct: 131 WSPFSLHPQLGRALYAQHFSSPTPIQAEALP-LARKGRDIVGVAETGSGKTLAYGLPILH 189
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LL A E K + +RALI+ PTRELALQV
Sbjct: 190 HLLAHASPA----ESKTRRS--------VRALILTPTRELALQV 221
>gi|322710764|gb|EFZ02338.1| ATP dependent RNA helicase, putative [Metarhizium anisopliae ARSEF
23]
Length = 794
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L L P L+ +I KLGF + T+I + IP + DVIG A+T SGKT AFG+P ++
Sbjct: 215 WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIAG-GDVIGKAQTGSGKTLAFGIPIVE 273
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L+ E+ + G++ K +G + A+I++PTRELA Q+
Sbjct: 274 KWLDMHEEQEDQAGDDGDQPNKKNREGPM-AVILSPTRELAKQI 316
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LHPLL++SI + G+ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILH 78
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 79 RLMPLANTSA-------------SPARHPVRALILTPTRELADQV 110
>gi|68484469|ref|XP_713845.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
gi|68484548|ref|XP_713805.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
gi|74656226|sp|Q59W52.1|PRP28_CANAL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|46435319|gb|EAK94703.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
gi|46435361|gb|EAK94744.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
Length = 581
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNE ++ L+ I +LG++E TS+ +A IP LA +++DV+G AET SGKT AF +P L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIP-LALKKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L E K + E P G LI+ PTRELALQ+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQI 262
>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
NCFM]
gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
ATCC 4796]
gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
NCFM]
gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
ATCC 4796]
Length = 495
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNEALLKAIKRSGFEEATPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+++++EKA ++A+II PTRELA+Q
Sbjct: 62 -IIDKKEKA-------------------IQAIIIEPTRELAIQ 84
>gi|302826717|ref|XP_002994766.1| hypothetical protein SELMODRAFT_39973 [Selaginella
moellendorffii]
gi|300136923|gb|EFJ04167.1| hypothetical protein SELMODRAFT_39973 [Selaginella
moellendorffii]
Length = 57
Score = 72.0 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/57 (64%), Positives = 43/57 (75%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97
LHP L++++ LGF T I KA IPA AH+ KDVIGAAET SGKT AFG+P LQRL
Sbjct: 1 LHPSLLRALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQRL 57
>gi|303278168|ref|XP_003058377.1| helicase [Micromonas pusilla CCMP1545]
gi|226459537|gb|EEH56832.1| helicase [Micromonas pusilla CCMP1545]
Length = 1131
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 74/165 (44%), Gaps = 38/165 (23%)
Query: 14 NGPDDAQEELVNEAEIS--TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
N P +V+ ++ + AW + LH L++++ +LGF T I +
Sbjct: 310 NYPTSGMGAVVDGVDLDRGADVSAWLQFDLHSKLLRALQELGFTTPTPIQSECLNPAVKG 369
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK------------------------- 106
R DVIGAAET SGKT AFGLP L RLL +R++ A+
Sbjct: 370 RCDVIGAAETGSGKTLAFGLPILHRLLTQRDEEAEEGSDSESVDGDGDGGGDGDGDDADP 429
Query: 107 ------MLEEKGEEAEKYAPK-----GHLRALIINPTRELALQVL 140
+ +E+G K LRALI+ PTRELA+QV
Sbjct: 430 DDPFANIEDERGRRGSAAGMKLDRRRKALRALIVAPTRELAMQVC 474
>gi|238878470|gb|EEQ42108.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 581
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
WNE ++ L+ I +LG++E TS+ +A IP LA +++DV+G AET SGKT AF +P L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIP-LALKKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L E K + E P G LI+ PTRELALQ+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQI 262
>gi|50302969|ref|XP_451422.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74607669|sp|Q6CXB7.1|HAS1_KLULA RecName: Full=ATP-dependent RNA helicase HAS1
gi|49640553|emb|CAH03010.1| KLLA0A09669p [Kluyveromyces lactis]
Length = 497
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 24/138 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++L+L MK+I K+GF + T++ IP L KDV+GAA+T SGKT AF +PA+
Sbjct: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLL-AGKDVLGAAKTGSGKTLAFLIPAI 93
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 94 EML----------------HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
Query: 155 AMAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 138 GIVIGG-------ANRRQ 148
>gi|167523499|ref|XP_001746086.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775357|gb|EDQ88981.1| predicted protein [Monosiga brevicollis MX1]
Length = 654
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L+L +L+K I +GF E T + IP +A +D+ A T SGKT AF LP L+
Sbjct: 147 FQDLQLSRVLLKGIANMGFAEPTLVQSTTIP-VALAGRDICACAATGSGKTAAFMLPVLE 205
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELALQVLMVASPSLKSNSLT 153
RLL + PK R L+++PTRELA+QV A + +T
Sbjct: 206 RLL-------------------FRPKQIAQTRVLVLSPTRELAVQVCQAARGLARFTDIT 246
Query: 154 LAMAAGSPL 162
MA G +
Sbjct: 247 FGMAVGDEV 255
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 23/108 (21%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
EF+++N HP + K I G+ T I IP++ R DV+G A+T +GKT AF L
Sbjct: 2 EFNSFN---FHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGR-DVMGLAQTGTGKTAAFAL 57
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P LQRL++ P+G LRAL++ PTRELA Q+
Sbjct: 58 PILQRLID-------------------GPRGRLRALVVAPTRELAEQI 86
>gi|403514287|ref|YP_006655107.1| ATP-dependent RNA helicase-like protein [Lactobacillus helveticus
R0052]
gi|403079725|gb|AFR21303.1| ATP-dependent RNA helicase-like protein [Lactobacillus helveticus
R0052]
Length = 499
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA Q KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALQGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ +K E+A ++A+II PTRELA+Q
Sbjct: 62 SI------------DKNEKA--------IQAIIIEPTRELAIQ 84
>gi|409048568|gb|EKM58046.1| hypothetical protein PHACADRAFT_182435 [Phanerochaete carnosa
HHB-10118-sp]
Length = 763
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 11/105 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW++ LHP L + +Y F T I IP +A + KDV+G AET SGKT A+GLP L
Sbjct: 130 AWHQFSLHPQLNRVLYAQRFLIPTPIQAKAIP-IATKGKDVVGIAETGSGKTLAYGLPIL 188
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L + AK+ E + +RALI+ PTRELALQV
Sbjct: 189 HYILTQ----AKV------EPPAQRQRRPMRALILAPTRELALQV 223
>gi|403215528|emb|CCK70027.1| hypothetical protein KNAG_0D02780 [Kazachstania naganishii CBS
8797]
Length = 476
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
+E TE ++ L L MK+I K+GF + T++ + IP L KDV+GAA+T SGKT
Sbjct: 2 SEKGTEIAEFSSLELSAPTMKAIEKMGFTKMTTVQERTIPPLL-AGKDVLGAAKTGSGKT 60
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AF +PA++ L A K+ P+ ++I PTRELALQ+ V
Sbjct: 61 LAFLIPAIETL----------------HALKFKPRNGTGVIVITPTRELALQIFGVVREL 104
Query: 147 LKSNSLTLAMAAGSPLLTSEHSNRRK 172
++ +S T + G +NRR+
Sbjct: 105 MEFHSQTFGIVIGG-------ANRRQ 123
>gi|350638396|gb|EHA26752.1| hypothetical protein ASPNIDRAFT_51832 [Aspergillus niger ATCC 1015]
Length = 606
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 13 GNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
GNG D + V + E + EL L MK I +GF+ T I + IP L R
Sbjct: 104 GNGADLPSLDAVRLPQTDGEPKKFTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGR 163
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
DV+GAA+T SGKT +F +PA++ L A ++ P+ L+++PT
Sbjct: 164 -DVLGAAKTGSGKTLSFLIPAVEML----------------SALRFKPRNGTGVLVVSPT 206
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAG 159
RELALQ+ VA + +S T + G
Sbjct: 207 RELALQIFGVARELMAHHSQTYGIVIG 233
>gi|145230033|ref|XP_001389325.1| ATP-dependent RNA helicase has1 [Aspergillus niger CBS 513.88]
gi|143019625|sp|A2Q9T6.1|HAS1_ASPNC RecName: Full=ATP-dependent RNA helicase has1
gi|134055440|emb|CAK43955.1| unnamed protein product [Aspergillus niger]
Length = 606
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 13 GNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
GNG D + V + E + EL L MK I +GF+ T I + IP L R
Sbjct: 104 GNGADLPSLDAVRLPQTDGEPKKFTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGR 163
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
DV+GAA+T SGKT +F +PA++ L A ++ P+ L+++PT
Sbjct: 164 -DVLGAAKTGSGKTLSFLIPAVEML----------------SALRFKPRNGTGVLVVSPT 206
Query: 133 RELALQVLMVASPSLKSNSLTLAMAAG 159
RELALQ+ VA + +S T + G
Sbjct: 207 RELALQIFGVARELMAHHSQTYGIVIG 233
>gi|358065451|ref|ZP_09151993.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
gi|356696343|gb|EHI57960.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
Length = 534
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L PLL+K++ K G+ + + I + IP + +R D++G A+T +GKT AF LP +Q
Sbjct: 3 FKELNLSPLLLKALEKKGYSQPSPIQEQAIPYVLEKR-DLLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+E K + K +RALI+ PTRELALQ+
Sbjct: 62 NLMECPRKRQQ--------------KKPIRALILTPTRELALQI 91
>gi|402084250|gb|EJT79268.1| ATP-dependent RNA helicase HAS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 615
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 19/145 (13%)
Query: 17 DDAQEELVN--EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
DD Q ++ EA +T A++EL L MK+I ++GF + T I + IP L KD
Sbjct: 115 DDVQPSGLSLPEASDATAAQAFDELGLSENTMKAIKEMGFDKMTEIQRRGIPPLLAG-KD 173
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
V+GAA+T SGKT AF +PA++ L + K+ P+ ++++PTRE
Sbjct: 174 VLGAAKTGSGKTLAFLIPAVEML----------------RSLKFKPRNGTGVIVVSPTRE 217
Query: 135 LALQVLMVASPSLKSNSLTLAMAAG 159
LALQ+ VA ++ +S T + G
Sbjct: 218 LALQIFGVARNLMQFHSQTYGICIG 242
>gi|302309551|ref|NP_986999.2| AGR333Cp [Ashbya gossypii ATCC 10895]
gi|442570164|sp|Q74Z73.2|HAS1_ASHGO RecName: Full=ATP-dependent RNA helicase HAS1
gi|299788412|gb|AAS54823.2| AGR333Cp [Ashbya gossypii ATCC 10895]
gi|374110250|gb|AEY99155.1| FAGR333Cp [Ashbya gossypii FDAG1]
Length = 504
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L +K+I K+GF + T + IP L R DV+GAA+T SGKT AF LPA++
Sbjct: 41 FDELNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGR-DVLGAAKTGSGKTLAFLLPAIE 99
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 100 ML----------------HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFG 143
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 144 IVIGG-------ANRRQ 153
>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 465
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L P L+ +I ++G+ E T+I +A IPA+ + +DV+GAA+T SGKT AF LP L
Sbjct: 4 SFSTLGLAPSLLNAIAEIGYDEPTAIQRAAIPAIL-RGEDVLGAAQTGSGKTAAFALPLL 62
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q LL+ R+ P+ L L++ PTRELA+QV
Sbjct: 63 QSLLDNRD----------------GPR-QLHGLVLVPTRELAVQV 90
>gi|449303441|gb|EMC99448.1| hypothetical protein BAUCODRAFT_29794 [Baudoinia compniacensis UAMH
10762]
Length = 718
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ AW L+L P + S+ +LGF T I +A IP A DV+G A T SGKT AFG+
Sbjct: 128 DVSAWRPLKLSPDTLASLARLGFSNPTPIQRAAIPE-ALGGHDVVGKASTGSGKTLAFGI 186
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P L+R LE R K + KG H AL+++PTRELA Q+
Sbjct: 187 PILERFLELRSKRNNV-PSKGR---------HPLALLLSPTRELAHQL 224
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+D + EL L P +MK+I +GF+E T I K IPA A + KD+IG A+T +GKT AFG+P
Sbjct: 2 YDTFKELGLVPEIMKAIEDMGFEEPTPIQKVSIPA-AMEGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L+++ EKG + A++++PTRELA+Q
Sbjct: 61 ILEKI---------DTTEKGPQ-----------AIVLSPTRELAIQ 86
>gi|336388501|gb|EGO29645.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 754
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 21/117 (17%)
Query: 30 STEFDA------WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
S FD+ W+ LHP L++ ++ GF T I +P A + +D++G AET S
Sbjct: 119 SISFDSKLLLPNWHSYSLHPHLLQILHHQGFTTPTPIQSKSLPK-AMEGRDIVGVAETGS 177
Query: 84 GKTRAFGLPALQRLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT A+GLP L LL R ++K+ K ++AL++ PTRELALQV
Sbjct: 178 GKTLAYGLPILHHLLSRSRHPSSKV-------------KRQVQALVLAPTRELALQV 221
>gi|340519177|gb|EGR49416.1| predicted protein [Trichoderma reesei QM6a]
Length = 558
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 19/133 (14%)
Query: 29 ISTEFDA--WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
+ST D+ + +L+L MK+I ++GF + T+I ++ IP L KDV+GAA+T SGKT
Sbjct: 72 VSTMADSQKFEDLKLSEKTMKAIQEMGFTKMTNIQRSAIPPLLAG-KDVLGAAKTGSGKT 130
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AF +PA++ L + ++ P+ ++++PTRELALQ+ VA
Sbjct: 131 LAFLIPAIEIL----------------SSLRFKPRNGTGVIVVSPTRELALQIFGVAREL 174
Query: 147 LKSNSLTLAMAAG 159
+K +S T + G
Sbjct: 175 MKYHSQTYGIVIG 187
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 15/106 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHPLL++SI + G+ T I IP + R DV+GAA+T +GKT AF +P L
Sbjct: 19 FADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTVPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVL 140
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 78 RLMPLANASA-------------SPARHPVRALILTPTRELADQVF 110
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHPLL++SI + G+ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 19 FADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 78 RLMPLANASA-------------SPARHPVRALILTPTRELADQV 109
>gi|323335994|gb|EGA77270.1| Has1p [Saccharomyces cerevisiae Vin13]
gi|365763984|gb|EHN05510.1| Has1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 505
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 24/147 (16%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E E +T + + EL+L +K+I K+GF TS+ IP L DV+GAA+T SGK
Sbjct: 34 EGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLL-AGXDVLGAAKTGSGK 92
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145
T AF +PA++ L + K+ P+ ++I PTRELALQ+ VA
Sbjct: 93 TLAFLIPAIELL----------------HSLKFKPRNGTGIIVITPTRELALQIFGVARE 136
Query: 146 SLKSNSLTLAMAAGSPLLTSEHSNRRK 172
++ +S T + G +NRR+
Sbjct: 137 LMEFHSQTFGIVIGG-------ANRRQ 156
>gi|58270130|ref|XP_572221.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|338818274|sp|P0CQ90.1|MAK5_CRYNJ RecName: Full=ATP-dependent RNA helicase MAK5
gi|57228479|gb|AAW44914.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 772
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ + LHP L +S F T+I IPA R DV+G AET SGKT A+ LP L
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
LL +R+ A + K L AL++ PTRELALQV+
Sbjct: 233 YLLGQRKSKAGI-------------KRPLSALVLCPTRELALQVM 264
>gi|242022824|ref|XP_002431838.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
gi|212517170|gb|EEB19100.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
corporis]
Length = 543
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARI--PALAHQRKDVIGAAETESGKTRAFGLP 92
+WN +H ++ ++Y + E T I ++R PA+ Q D++GAAET SGKT AFG+P
Sbjct: 3 SWNSFGIHEKILYALYDKKYFEPTKI-QSRCLGPAICGQM-DILGAAETGSGKTLAFGIP 60
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL 152
+ +L EK L + E + K +L ALI+ PTRELA+QV + K +
Sbjct: 61 IVNGILSIMEKE---LNQSIESLKMKNEKNNLYALILTPTRELAVQVRNHLNDICKYTKI 117
Query: 153 TLAMAAG 159
+A+ G
Sbjct: 118 NIALIVG 124
>gi|391340745|ref|XP_003744697.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Metaseiulus
occidentalis]
Length = 757
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 28/123 (22%)
Query: 26 EAEISTEFD--------AWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRKDVI 76
E ++S E D W + P ++K++ +L + E + I + IPA+ R D++
Sbjct: 233 EEDVSVELDDAEKALTKEWEIFEIEPRILKALAQLRYTEPSEIQSQCLIPAI-RDRLDIL 291
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAAET SGKT AFG+P + RLL+ER + L ALI+ PTRELA
Sbjct: 292 GAAETGSGKTLAFGIPLVHRLLQER------------------CRNKLGALILTPTRELA 333
Query: 137 LQV 139
+Q+
Sbjct: 334 VQI 336
>gi|444318663|ref|XP_004179989.1| hypothetical protein TBLA_0C06780 [Tetrapisispora blattae CBS 6284]
gi|387513030|emb|CCH60470.1| hypothetical protein TBLA_0C06780 [Tetrapisispora blattae CBS 6284]
Length = 496
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 24/155 (15%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D+ E+ N + + E A+ +L L +K+I KL F E T++ IP L R DV+G
Sbjct: 16 DSNLEVENGSSEAPETTAFADLNLSEPTLKAIGKLDFTEMTAVQARTIPPLLAGR-DVLG 74
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
AA+T SGKT AF +PA++ L + K+ P+ ++I PTRELAL
Sbjct: 75 AAKTGSGKTLAFLIPAIEML----------------HSLKFKPRNGTGVIVITPTRELAL 118
Query: 138 QVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
Q+ VA ++ +S T + G +NRR+
Sbjct: 119 QIFGVARELMEFHSQTFGIVIGG-------ANRRQ 146
>gi|134117550|ref|XP_772546.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818273|sp|P0CQ91.1|MAK5_CRYNB RecName: Full=ATP-dependent RNA helicase MAK5
gi|50255161|gb|EAL17899.1| hypothetical protein CNBL0260 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 772
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ + LHP L +S F T+I IPA R DV+G AET SGKT A+ LP L
Sbjct: 174 WSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGVAETGSGKTLAYSLPILH 232
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
LL +R+ A + K L AL++ PTRELALQV+
Sbjct: 233 YLLGQRKSKAGI-------------KRPLSALVLCPTRELALQVM 264
>gi|403223642|dbj|BAM41772.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 567
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ L L+K+IY+LG++ T I IP LA + KD++ AET SGKT +F +P LQ
Sbjct: 73 WSDFSLCKSLLKAIYELGYEHPTLIQTKVIP-LALEGKDLLVTAETGSGKTASFVIPTLQ 131
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA---SPSLKSNSL 152
RL+ A+ ++++ ++ + + + L+I PTRELA Q V S L +N+
Sbjct: 132 RLV-----ASGFIKQRTKDNYTHGLRHGTKVLVILPTRELAAQCYEVYKSLSKYLTTNAA 186
Query: 153 TLAMAAGSPLLTSEHSNRRKPN 174
L G P+ E+ ++ P+
Sbjct: 187 LL--TGGIPIKEQENKLKQIPD 206
>gi|358382399|gb|EHK20071.1| hypothetical protein TRIVIDRAFT_171594 [Trichoderma virens Gv29-8]
Length = 584
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L+L MK+I ++GF + T+I ++ IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 107 FEDLKLSEKTMKAIQEMGFTKMTNIQRSAIPPLLAG-KDVLGAAKTGSGKTLAFLIPAIE 165
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + ++ P+ ++++PTRELALQ+ VA +K +S T
Sbjct: 166 IL----------------SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMKHHSQTYG 209
Query: 156 MAAG 159
+ G
Sbjct: 210 IVIG 213
>gi|330926678|ref|XP_003301562.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
gi|311323563|gb|EFQ90355.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
Length = 827
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 12/105 (11%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW+EL L ++ ++ KL F + T+I K+ IP + R DVIG A T SGKT AFG+P +
Sbjct: 259 AWDELELSEEMLGALAKLKFSKPTTIQKSTIPEILAGR-DVIGKASTGSGKTLAFGIPII 317
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L R A+K E+K P ALII PTRELA Q+
Sbjct: 318 ESYLASRSSASKDPEDK-------MPI----ALIIAPTRELAHQI 351
>gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM
2246]
Length = 437
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 20/124 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L LHPL++++ LG++E T + IPA A + +DV+ A+T +GKT F LP L
Sbjct: 3 FKALGLHPLIVRATQDLGYQEPTPVQAGAIPA-ALEGRDVLATAQTGTGKTAGFLLPILH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL + P+G RAL+++PTRELA Q+ V + K + A
Sbjct: 62 RLLAQ-------------------PRGGTRALVLSPTRELAEQIQDVCTGLAKHTPIQSA 102
Query: 156 MAAG 159
+ G
Sbjct: 103 LVVG 106
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF E T I IP +A Q KDV+G AET SGKT AF +P L
Sbjct: 281 SFQAMSLSRPILRGLAAVGFSEPTPIQNKAIP-IAMQGKDVVGGAETGSGKTAAFLIPIL 339
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R I PTRELA+Q VA+ +
Sbjct: 340 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 380
Query: 153 TLAMAAG 159
T A+ AG
Sbjct: 381 TFALMAG 387
>gi|19354448|gb|AAH24730.1| Ddx27 protein [Mus musculus]
gi|148674546|gb|EDL06493.1| mCG14602, isoform CRA_a [Mus musculus]
Length = 292
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 233
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 234 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 276
Query: 145 PSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 277 QLAQFCSITTCLAVG 291
>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 474
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L+N E + FDA++ LHP ++ ++ G+++ T + +P +A + KD++ A+T
Sbjct: 22 LINSIEPTMNFDAFD---LHPKILDAVSARGYQQLTQVQSQVLP-VAMEGKDIMACAQTG 77
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+GKT AF LP L RL++E + E E E + ++ L++ PTRELA+QV
Sbjct: 78 TGKTAAFALPLLNRLIQEY----NLFTEGDLEPEH---QSKVKVLVLTPTRELAIQV 127
>gi|321261600|ref|XP_003195519.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
gi|317461993|gb|ADV23732.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 772
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ + LHP L +S F T+I IPA R DV+G AET SGKT A+ LP L
Sbjct: 174 WSSISLHPALKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGVAETGSGKTLAYALPILH 232
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
LL +R+ A + K L AL++ PTRELALQV+
Sbjct: 233 YLLGQRKLRAGI-------------KRPLSALVLCPTRELALQVM 264
>gi|429220230|ref|YP_007181874.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131093|gb|AFZ68108.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 477
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 21/112 (18%)
Query: 29 ISTEF-DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
++T F DA++ L LH L +++ +LG+ + T I +P A Q +DV+GAA+T SGKT
Sbjct: 1 MTTTFADAFSALDLHASLQRAVGELGYAKPTPIQALALPP-ALQGRDVLGAAQTGSGKTA 59
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF LP LQRL + P+G RAL++ PTRELA Q+
Sbjct: 60 AFLLPILQRL-------------------QGLPRGKTRALVLAPTRELAAQI 92
>gi|427788943|gb|JAA59923.1| Putative gamete proteinration [Rhipicephalus pulchellus]
Length = 691
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S + AW + +++++ +L F E T I +PA D++GAAET SGKT AF
Sbjct: 116 SPDMSAWLNCHVPEPVLRALAELNFTEPTEIQAQTLPAAIRDHLDIMGAAETGSGKTLAF 175
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
G+P L ++E + + + E K P L+AL++ PTRELA+QV
Sbjct: 176 GIPLLHHIMERKSRLS------AEGDTKAMP---LQALVLTPTRELAIQV 216
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ + L + K + +GF E T I IP +A Q KDV+G AET SGKT AF +P L
Sbjct: 286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIP-IAMQGKDVVGGAETGSGKTAAFLIPIL 344
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R I PTRELA+Q VA+ +
Sbjct: 345 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 385
Query: 153 TLAMAAG 159
T A+ AG
Sbjct: 386 TFALLAG 392
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P L++S+ +LGF+E+T I + IP LA + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLDPELLQSVERLGFEEATPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPMLQ 61
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ L+ R ++ L+I PTRELA+Q
Sbjct: 62 KIDLKNRA---------------------VQGLVIAPTRELAIQ 84
>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|349611847|ref|ZP_08891077.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|348608312|gb|EGY58297.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
Length = 487
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P L+K+I + GF+E+T I + IP L KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELNLKPELLKAIKRAGFEEATPIQEKTIP-LVLSGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L +K +E ++ALII PTRELA+Q
Sbjct: 62 TL------------DKKQEG--------IQALIIEPTRELAIQ 84
>gi|440296216|gb|ELP89056.1| ATP-dependent RNA helicase mak5, putative [Entamoeba invadens IP1]
Length = 606
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 25/128 (19%)
Query: 16 PDDAQEELVNEAEISTEFDAWNEL-RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
P+ +EE +++A++ E W +L ++ +++++Y LGF T I K IP +KD
Sbjct: 44 PNAMEEEPISDADLYIEMKEWRKLYKIDITILRALYDLGFIYPTEIQKFAIPKALTSQKD 103
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL---RALIINP 131
+IG+A T SGKT +F +P +QR +E KG + LI+ P
Sbjct: 104 LIGSAPTGSGKTLSFLIPLVQRFIE---------------------KGTFDTTQCLILVP 142
Query: 132 TRELALQV 139
TRELA+Q+
Sbjct: 143 TRELAVQI 150
>gi|325185978|emb|CCA20482.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 743
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W LH ++++++ F T I + I A QR+DV+G A T SGKT AFG+P LQ
Sbjct: 152 WEAFNLHHTILEALHDNKFLAPTVIQRKAIAAALIQREDVVGIASTGSGKTLAFGIPILQ 211
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + A K G +ALII PTRELALQ+ LK S+ ++
Sbjct: 212 HFLNKTSGALK--SHPG-----------CKALIIAPTRELALQIQKHLKAMLKDGSIGIS 258
Query: 156 MAAG 159
+ G
Sbjct: 259 VLVG 262
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 20/149 (13%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
AE T F + N L ++KSI LGF T I A IP +A KDV+G A T SGKT
Sbjct: 179 AEAHTSFLSMN---LSRPIIKSITTLGFTTPTPIQAATIP-VALLGKDVVGNAVTGSGKT 234
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AF +P L+RL M ++G++A R LI+ PTRELA+Q V S
Sbjct: 235 AAFIIPMLERL---------MYRDRGKKA------AATRCLILAPTRELAVQCYEVGSKL 279
Query: 147 LKSNSLTLAMAAGSPLLTSEHSN-RRKPN 174
+ A+ G + ++ +N R +P+
Sbjct: 280 AAHTDIRFALVVGGLSVKAQETNLRTRPD 308
>gi|425768575|gb|EKV07093.1| ATP-dependent RNA helicase DDX18 [Penicillium digitatum PHI26]
gi|425776136|gb|EKV14370.1| ATP-dependent RNA helicase DDX18 [Penicillium digitatum Pd1]
Length = 602
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
NG D E V + + + EL L M+ I +GF T I + +P L R
Sbjct: 99 NGTDLPTMEDVRLPQTEGKLQKFTELNLSEKTMQGINDMGFTTMTEIQQRTVPPLLAGR- 157
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DV+GAA+T SGKT AF LPA++ L A ++ P+ L+++PTR
Sbjct: 158 DVLGAAKTGSGKTLAFLLPAIEML----------------HALRFKPRNGTGVLVVSPTR 201
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
ELALQ+ VA + +S T + G
Sbjct: 202 ELALQIFGVARELMAHHSQTYGIVIG 227
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R++ L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRQE--------------------LQGLVIAPTRELAIQ 84
>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 418
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L ++ ++ +LGFKE+T + K IP L Q DV+ A+T +GKT AFGLP +
Sbjct: 2 SFASLGLTEQILTTVAELGFKEATPVQKQAIP-LVLQGHDVLAGAQTGTGKTAAFGLPLI 60
Query: 95 QRLLE---EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
QRL+E ER + +K+ +R+LI+ PTRELA QV ++
Sbjct: 61 QRLIESPIERHEESKV----------------VRSLILTPTRELAQQVFDSLVSYTQNTE 104
Query: 152 LTLAMAAGSPLLTSEHSN 169
L + +A G + + N
Sbjct: 105 LKVVVAYGGTSINVQKEN 122
>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
Length = 527
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P L+KS+ +LGF+E+T I IP LA + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLAPELLKSVERLGFEEATPIQGQTIP-LALEGKDVIGQAQTGTGKTAAFGLPMLQ 61
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + R +++ L+I PTRELA+Q
Sbjct: 62 KIDVNNR---------------------NVQGLVIAPTRELAIQ 84
>gi|365984861|ref|XP_003669263.1| hypothetical protein NDAI_0C03600 [Naumovozyma dairenensis CBS 421]
gi|343768031|emb|CCD24020.1| hypothetical protein NDAI_0C03600 [Naumovozyma dairenensis CBS 421]
Length = 519
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+L L MK+I K+GF+ T + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 53 FNDLSLSSQTMKAIEKMGFESLTPVQARTIPPLMAGR-DVLGAAKTGSGKTLAFLIPAIE 111
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ ++I PTRELALQ+ V ++ +S T
Sbjct: 112 LLY----------------SLKFKPRNGTGIIVITPTRELALQIFGVVRELMEFHSQTFG 155
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 156 IVIGG-------ANRRQ 165
>gi|149042852|gb|EDL96426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Rattus norvegicus]
Length = 340
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D + ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 175 EDASEYDKSLTFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 233
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 234 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 276
Query: 145 PSLKSNSLTLAMAAGSPLLTSEHSNRR 171
+ S+T +A G + S+ + R
Sbjct: 277 QLAQFCSITTCLAVGGLDVKSQEAALR 303
>gi|358365362|dbj|GAA81984.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 606
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
NG D + V + +E + EL L MK I +GF+ T I + IP L R
Sbjct: 105 NGADLPSLDAVRLPQTDSEPKKFTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGR- 163
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DV+GAA+T SGKT +F +PA++ L A ++ P+ L+++PTR
Sbjct: 164 DVLGAAKTGSGKTLSFLIPAVEML----------------SALRFKPRNGTGVLVVSPTR 207
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
ELALQ+ VA + +S T + G
Sbjct: 208 ELALQIFGVARELMAHHSQTYGIVIG 233
>gi|170100044|ref|XP_001881240.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643919|gb|EDR08170.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 616
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 14/104 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ LHP L ++++ F T I +A +P +A +DVIG A+T SGKT A+GLP L
Sbjct: 31 WHKYSLHPQLSRALHAKSFLSPTPIQEAALP-MALAGRDVIGVAQTGSGKTLAYGLPILH 89
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L + + + K K LRAL++ PTRELALQV
Sbjct: 90 HILSQPKPSPKT-------------KRPLRALVLAPTRELALQV 120
>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
Length = 533
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ +LGF+E+T I IP LA + KDVIG A+T +GKT AFGLP LQ
Sbjct: 8 FTELGLAPELLKSVERLGFEEATPIQAQTIP-LALEGKDVIGQAQTGTGKTAAFGLPMLQ 66
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + R +++ L+I PTRELA+Q
Sbjct: 67 KIDVNNR---------------------NVQGLVIAPTRELAIQ 89
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P +MKSI K+GF+E+T I IP L+ + KD+IG A+T +GKT AFG+P
Sbjct: 4 FQDLGLSPAMMKSIKKMGFEEATPIQAETIP-LSLENKDLIGQAQTGTGKTAAFGIP--- 59
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+E+ +K A +++ +++ PTRELA+QV
Sbjct: 60 -LIEKVDKDAD----------------YIQGIVVAPTRELAIQV 86
>gi|366994590|ref|XP_003677059.1| hypothetical protein NCAS_0F02200 [Naumovozyma castellii CBS 4309]
gi|342302927|emb|CCC70704.1| hypothetical protein NCAS_0F02200 [Naumovozyma castellii CBS 4309]
Length = 508
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P +K+I K+GF T + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 46 FQDLTLSPPTLKAIEKMGFTTLTPVQARTIPPLMAGR-DVLGAAKTGSGKTLAFLIPAIE 104
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 105 LL----------------HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFG 148
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 149 IVIGG-------ANRRQ 158
>gi|255947238|ref|XP_002564386.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591403|emb|CAP97631.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 602
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
NG D E V + + EL L M+ I +GF T I + +P L R
Sbjct: 99 NGTDLPTMEDVRLPQTEGRLQKFTELNLSEKTMQGINDMGFTTMTEIQQRTVPPLLAGR- 157
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
DV+GAA+T SGKT AF LPA++ L A ++ P+ L+++PTR
Sbjct: 158 DVLGAAKTGSGKTLAFLLPAIEML----------------HALRFKPRNGTGVLVVSPTR 201
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
ELALQ+ VA + +S T + G
Sbjct: 202 ELALQIFGVARELMAHHSQTYGIVIG 227
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD--AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
EIS D ++ ++ L LMK+I + F T I A IP +A +D+ G A T +GK
Sbjct: 147 EISENHDITSFYQMNLSRPLMKAIAAMNFSHPTPIQCAAIP-VALLGRDICGCAATGTGK 205
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL---RALIINPTRELALQVLMV 142
T A+ LP L+RLL Y P+G L R L++ PTREL +QV+ V
Sbjct: 206 TAAYMLPILERLL-------------------YKPQGSLSITRVLVLVPTRELGVQVIQV 246
Query: 143 ASPSLKSNSLTLAMAAG 159
A K ++ + +A G
Sbjct: 247 AKQLSKFTTIEIGLAVG 263
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF E T I +P +A Q KDV+G AET SGKT AF +P L
Sbjct: 289 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVP-IAMQGKDVVGGAETGSGKTAAFLIPIL 347
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+RLL ++K R I PTRELA+Q VA+ +T
Sbjct: 348 ERLLYRQKKIPTT-----------------RVAIFMPTRELAVQCFNVATKLASFTDITF 390
Query: 155 AMAAG 159
A+ AG
Sbjct: 391 ALMAG 395
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF E T I +P +A Q KDV+G AET SGKT AF +P L
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVP-IAMQGKDVVGGAETGSGKTAAFLIPIL 334
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R I PTRELA+Q VA+ +
Sbjct: 335 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 375
Query: 153 TLAMAAG 159
T A+ AG
Sbjct: 376 TFALMAG 382
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF E T I +P +A Q KDV+G AET SGKT AF +P L
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVP-IAMQGKDVVGGAETGSGKTAAFLIPIL 334
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R I PTRELA+Q VA+ +
Sbjct: 335 ERLL-------------------YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 375
Query: 153 TLAMAAG 159
T A+ AG
Sbjct: 376 TFALMAG 382
>gi|399886888|gb|AFP52950.1| vasa [Euphyllia ancora]
Length = 675
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 34/190 (17%)
Query: 7 ATVVVVGNGPDDAQEELVNEAEISTEFDAWNEL---------------------RLHPLL 45
A V V P + +EEL E FD ++E+ +L+
Sbjct: 175 APVTYVPPTPSENEEELFRSIERGINFDKYDEIPVEVTGRGKEAIIPIQGFHQAQLYETF 234
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
++ K G+ + T + K IPA+ R DV+ A+T SGKT AF LP + +L+
Sbjct: 235 QGNVKKAGYTKPTPVQKYAIPAILAGR-DVMACAQTGSGKTAAFLLPVMTGMLQ------ 287
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165
K L A ++P+ ALII+PTRELALQ+ A S L A+A G ++
Sbjct: 288 KGLTSSAMTAGAHSPQ----ALIISPTRELALQIYNEARKFSHSTMLVPAVAYGG--VSV 341
Query: 166 EHSNRRKPNK 175
+H R+ NK
Sbjct: 342 QHQLRQLQNK 351
>gi|363752775|ref|XP_003646604.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890239|gb|AET39787.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
Length = 500
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L +K+I K+GF T + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 38 FDELGLSKQTLKAIEKMGFTTMTQVQAKTIPPLMAGR-DVLGAAKTGSGKTLAFLIPAIE 96
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ ++I PTRELALQ+ VA ++ +S T
Sbjct: 97 ML----------------HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFG 140
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 141 IVIGG-------ANRRQ 150
>gi|143345244|sp|Q0CI35.2|MAK5_ASPTN RecName: Full=ATP-dependent RNA helicase mak5
Length = 774
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E + + AW L L P ++ S+ KL F T++ K+ IP + DV+G A T SGK
Sbjct: 194 EEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGH-DVVGKASTGSGK 252
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T AFG+P L+ LE++ + K ++K E + ALI++PTRELA Q++
Sbjct: 253 TLAFGIPILEYYLEKKRRETKNKDDKKETSPI--------ALILSPTRELAHQLV 299
>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
Length = 524
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 29/170 (17%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E +A+ +L L P L K + KLG K +T I + IPA+ KD IGAA+T SGKT AF L
Sbjct: 5 ETNAFLQLGLRPWLAKQLTKLGLKGATPIQENCIPAILSG-KDCIGAAKTGSGKTFAFAL 63
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSLK 148
P L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 64 PILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAMG 103
Query: 149 SNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 104 VRVCVVSGGTDQMIESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 40/157 (25%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL L L++S+ K GF+E T I IP L KDV+G A+T +GKT AFGLP +
Sbjct: 6 SFDELGLSENLLRSVKKKGFEEPTPIQAQVIPTLLKSEKDVVGQAQTGTGKTAAFGLPIM 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-----------MVA 143
R++ + ++ ++ALI+ PTRELA+QV M
Sbjct: 66 DRIVSDEKR--------------------VKALILAPTRELAIQVSEELNSLKGKKKMKV 105
Query: 144 SPSLKSNSLTLAM---------AAGSPLLTSEHSNRR 171
P S+ L + G+P +H NR+
Sbjct: 106 VPIYGGQSIELQLKRLSSGADIVVGTPGRVIDHLNRK 142
>gi|417948797|ref|ZP_12591939.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809160|gb|EGU44284.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 423
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L L L+ ++ +L F TS+ + IP L + KDV+ A+T +GKT AFGLP +
Sbjct: 7 SFNQLGLSDHLLATLEELNFTAPTSVQEQAIP-LVLEGKDVLAGAQTGTGKTAAFGLPII 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRLL ++ PK +RAL++ PTRELA QV S K L +
Sbjct: 66 QRLLATKDNVIP------------NPK-LVRALVLVPTRELAQQVFDNVSSYAKGTDLKV 112
Query: 155 AMAAGSPLLTSEHSNRRK 172
+A G + + N R+
Sbjct: 113 VVAYGGVSMKVQTDNLRQ 130
>gi|50295040|ref|XP_449931.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608117|sp|Q6FIL3.1|HAS1_CANGA RecName: Full=ATP-dependent RNA helicase HAS1
gi|49529245|emb|CAG62911.1| unnamed protein product [Candida glabrata]
Length = 494
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 20 QEELVNEAEI-STEFD-AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+EE+V +A++ S++ D ++ L L M++I K+GF + T + IP L R DV+G
Sbjct: 13 KEEVVVKADVESSDVDHSFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGR-DVLG 71
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
AA+T SGKT AF LP ++ L + K+ P+ +II PTRELAL
Sbjct: 72 AAKTGSGKTLAFLLPTIELL----------------HSLKFKPRNGTGVIIITPTRELAL 115
Query: 138 QVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
Q+ V ++ +S T + G +NRR+
Sbjct: 116 QIFGVVRELMEFHSQTFGIVIGG-------ANRRQ 143
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHPLL+K I G+ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 19 FADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +RALI+ PTRELA QV
Sbjct: 78 RLMPLANTSA-------------SPARHPVRALILTPTRELADQV 109
>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
Length = 527
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 46/179 (25%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + + L L P ++K + KLG K +T I + IPA+ KD IGAA+T SGKT AF L
Sbjct: 5 ETNPFQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSG-KDCIGAAQTGSGKTFAFAL 63
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P L+RL EE P H AL++ PT ELA Q+ S
Sbjct: 64 PILERLSEE-------------------PVSHF-ALVLTPTHELAYQI---------SEQ 94
Query: 152 LTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQPKTTTLLPSSLA 210
+ AG P+ R GG D+ ++S K + +P +P LA
Sbjct: 95 F---LVAGQPM-----------GVRVCVVSGGTDQMIESQKL--MQRPHIVVAMPGRLA 137
>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 423
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L L L+ ++ +L F TS+ + IP L + KDV+ A+T +GKT AFGLP +
Sbjct: 7 SFNQLGLSEQLLTTLSELNFTAPTSVQEQAIP-LVLEGKDVLAGAQTGTGKTAAFGLPII 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRL+E ++ PK +RAL++ PTRELA QV + K + +
Sbjct: 66 QRLIETKDNVIP------------NPK-LVRALVLVPTRELAQQVFDNVTSYAKGTDIKV 112
Query: 155 AMAAGSPLLTSEHSNRR 171
+A G + + N R
Sbjct: 113 VVAYGGVSMKVQTDNLR 129
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P ++++I +LGF+E+T I IP +A Q KD+IG A+T +GKT AFG+P +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIP-IALQGKDMIGQAQTGTGKTAAFGIPMIN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EK +RALI+ PTRELA+QV
Sbjct: 63 KISKNDEK--------------------IRALIMAPTRELAIQV 86
>gi|115400477|ref|XP_001215827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191493|gb|EAU33193.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 791
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
E + + AW L L P ++ S+ KL F T++ K+ IP + DV+G A T SGK
Sbjct: 194 EEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGH-DVVGKASTGSGK 252
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T AFG+P L+ LE++ + K ++K E + ALI++PTRELA Q++
Sbjct: 253 TLAFGIPILEYYLEKKRRETKNKDDKKETSPI--------ALILSPTRELAHQLV 299
>gi|68011320|ref|XP_671091.1| DEAD/DEAH box helicase [Plasmodium berghei strain ANKA]
gi|56486951|emb|CAI03286.1| DEAD/DEAH box helicase, putative [Plasmodium berghei]
Length = 195
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 36/154 (23%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD +E L+ E W++L + L+K +Y+L F+ T I K IP LA + K ++
Sbjct: 41 DDEKENLLIEKN-----TLWSDLHISRPLLKVLYELKFENPTYIQKDVIP-LALEGKSIL 94
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR----------- 125
+ET SGKT AF LP L+RLL Y+P LR
Sbjct: 95 ANSETGSGKTLAFVLPMLERLL-------------------YSPNIKLRKENRKSICITK 135
Query: 126 ALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
ALI+ PTRELA+Q V + K + +T ++ G
Sbjct: 136 ALILLPTRELAMQCYEVINNLTKYSPITCSLFCG 169
>gi|403218173|emb|CCK72664.1| hypothetical protein KNAG_0L00410 [Kazachstania naganishii CBS
8797]
Length = 613
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 36 WN--ELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W+ E L P + +I LGF + T + + IP A KDV+ AET SGKT AF +P
Sbjct: 8 WDTLEYELQPWVRSAIETLGFDKMTPVQASTIPLFAGN-KDVVVDAETGSGKTVAFVVPI 66
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
L+++++E+ K +GH +LI+ PTRELA Q+ V L +
Sbjct: 67 LEKIVQEQAFRLK--------------RGHFHSLILTPTRELAKQIETVVQSFLVHYTEG 112
Query: 154 LAMAAGSPLL--TSEHSNRRKPN 174
G LL T+EHS R N
Sbjct: 113 TQQPIGCQLLVGTNEHSIRDDVN 135
>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
DSM 16047]
gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
DSM 16047]
Length = 496
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++++EKA ++A+II PTRELA+Q
Sbjct: 62 T-IDKKEKA-------------------IQAIIIEPTRELAIQ 84
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 85 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVGGR-DVMGAAQTGTGKTAGF 140
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLK 148
LP +Q LL E +A +P H +RALI+ PTRELA QV + K
Sbjct: 141 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 187
Query: 149 SNSLTLAMAAG 159
+L A+ G
Sbjct: 188 YTALRSAVVFG 198
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|336375445|gb|EGO03781.1| hypothetical protein SERLA73DRAFT_46424 [Serpula lacrymans var.
lacrymans S7.3]
Length = 615
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ LHP L++ ++ GF T I +P A + +D++G AET SGKT A+GLP L
Sbjct: 34 WHSYSLHPHLLQILHHQGFTTPTPIQSKSLPK-AMEGRDIVGVAETGSGKTLAYGLPILH 92
Query: 96 RLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LL R ++K+ K ++AL++ PTRELALQV
Sbjct: 93 HLLSRSRHPSSKV-------------KRQVQALVLAPTRELALQV 124
>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
30SC]
gi|385816863|ref|YP_005853253.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
GRL1118]
gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
30SC]
gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
GRL1118]
Length = 497
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQEQTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++++EKA ++A+II PTRELA+Q
Sbjct: 62 -TIDKKEKA-------------------IQAIIIEPTRELAIQ 84
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P LMK++ K+GF+E+T I A IP L+ Q +DVIG A+T +GKT AFG+P ++
Sbjct: 7 FKEFGLSPELMKAVSKMGFEEATPIQAATIP-LSLQNRDVIGQAQTGTGKTAAFGIPLIE 65
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +A ++A+++ PTRELA+QV
Sbjct: 66 KI------------DMNNDA--------VQAIVVAPTRELAIQV 89
>gi|423687688|ref|ZP_17662491.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493471|gb|EHN69074.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 418
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L ++ ++ +LGFKE+T + K IP L Q DV+ A+T +GKT AFGLP +
Sbjct: 2 SFASLGLTEQILITVAELGFKEATPVQKQAIP-LVLQGHDVLAGAQTGTGKTAAFGLPLI 60
Query: 95 QRLLE---EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
QRL+E ER + +K+ +R+LI+ PTRELA QV ++
Sbjct: 61 QRLIENPIERHEESKV----------------VRSLILTPTRELAQQVFDSLVSYTQNTE 104
Query: 152 LTLAMAAGSPLLTSEHSN 169
L + +A G + + N
Sbjct: 105 LKVVVAYGGTSINVQKEN 122
>gi|396496328|ref|XP_003844718.1| hypothetical protein LEMA_P000260.1 [Leptosphaeria maculans JN3]
gi|312221299|emb|CBY01239.1| hypothetical protein LEMA_P000260.1 [Leptosphaeria maculans JN3]
Length = 613
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L M++I +GF+ T I + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 136 FSELNLSDRTMEAIKNMGFETMTEIQQKTIPPLL-SGKDVLGAAKTGSGKTLAFLIPAIE 194
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 195 ML----------------SAMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFG 238
Query: 156 MAAG 159
+ G
Sbjct: 239 IVIG 242
>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 467
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ R HP + I LG+ T I + IP A +DVIG A+T +GKT AF LP L
Sbjct: 2 SFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPH-ALDGRDVIGIAQTGTGKTAAFVLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+ P+G +RA+I+ PTRELA Q+
Sbjct: 61 QRLMR-------------------GPRGRVRAMIVTPTRELAEQI 86
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|238501664|ref|XP_002382066.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
gi|220692303|gb|EED48650.1| ATP dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
Length = 769
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 15/121 (12%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
QEE + A++S AW L L P ++ I K+ F TS+ KA IP + R DVIG A
Sbjct: 186 QEEEDDGADVS----AWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKA 240
Query: 80 ETESGKTRAFGLPALQRLLEE-REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
T SGKT AFG+P L+ LE+ R K +K E + P AL+++PTRELA Q
Sbjct: 241 STGSGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQ 291
Query: 139 V 139
+
Sbjct: 292 L 292
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P ++++I +LGF+E+T I IP +A Q KD+IG A+T +GKT AFG+P +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAISIP-IALQGKDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EK +RALI+ PTRELA+QV
Sbjct: 63 KISKNDEK--------------------IRALIMAPTRELAIQV 86
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|255079576|ref|XP_002503368.1| helicase [Micromonas sp. RCC299]
gi|226518634|gb|ACO64626.1| helicase [Micromonas sp. RCC299]
Length = 1160
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 14 NGPDDAQEELVNEAEISTEFDA--WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
N P +V+ ++ D W + LHP L++++ LGF + T I +
Sbjct: 328 NYPTSGMGAVVDGVDLDAGADVSNWLQFDLHPKLLRALQDLGFSDPTPIQTECLNPAIKG 387
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEK 117
R DVIGAAET SGKT AFGLP L R+L +R++ A + E+AE+
Sbjct: 388 RCDVIGAAETGSGKTLAFGLPILHRILTQRDEEADESASESEDAEQ 433
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +++ + +GF E T I +P +A Q KDV+G AET SGKT AF +P L
Sbjct: 290 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVP-IAMQGKDVVGGAETGSGKTAAFLIPIL 348
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+RLL ++K R I PTRELA+Q VA+ +T
Sbjct: 349 ERLLYRQKKIPTT-----------------RVAIFMPTRELAVQCFNVATKLASFTDITF 391
Query: 155 AMAAG 159
A+ AG
Sbjct: 392 ALMAG 396
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVGGR-DVMGAAQTGTGKTAGF 69
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLK 148
LP +Q LL E +A +P H +RALI+ PTRELA QV + K
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 SNSLTLAMAAG 159
+L A+ G
Sbjct: 117 YTALRSAVVFG 127
>gi|423201820|ref|ZP_17188399.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
gi|404615767|gb|EKB12726.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
Length = 467
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|317142764|ref|XP_001819080.2| ATP-dependent RNA helicase mak5 [Aspergillus oryzae RIB40]
gi|391863775|gb|EIT73074.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 769
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 15/121 (12%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
QEE + A++S AW L L P ++ I K+ F TS+ KA IP + R DVIG A
Sbjct: 186 QEEEDDGADVS----AWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKA 240
Query: 80 ETESGKTRAFGLPALQRLLEE-REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
T SGKT AFG+P L+ LE+ R K +K E + P AL+++PTRELA Q
Sbjct: 241 STGSGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQ 291
Query: 139 V 139
+
Sbjct: 292 L 292
>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
Length = 527
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 46/179 (25%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + + L L P ++K + KLG K +T I + IPA+ KD IGAA+T SGKT AF L
Sbjct: 5 EANPFQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSG-KDCIGAAQTGSGKTFAFAL 63
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P L+RL EE P H AL++ PT ELA Q+ S
Sbjct: 64 PILERLSEE-------------------PVSHF-ALVLTPTHELAYQI---------SEQ 94
Query: 152 LTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQPKTTTLLPSSLA 210
+ AG P+ R GG D+ ++S K + +P +P LA
Sbjct: 95 F---LVAGQPM-----------GVRVCVVSGGTDQMIESQKL--MQRPHIVVAMPGRLA 137
>gi|359795873|ref|ZP_09298486.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
gi|359366192|gb|EHK67876.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
Length = 466
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
+HPLL++SI + G+ T I IP + R DV+GAA+T +GKT AF LP L RL+
Sbjct: 1 MHPLLLQSIAETGYTTPTPIQAQAIPVVVEGR-DVMGAAQTGTGKTAAFTLPILHRLMPL 59
Query: 101 REKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
+A +P H +RALI+ PTRELA QV
Sbjct: 60 ANTSA-------------SPARHPVRALILTPTRELADQV 86
>gi|117619321|ref|YP_856922.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 461
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|423206363|ref|ZP_17192919.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
gi|404621915|gb|EKB18780.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
Length = 467
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|91207159|sp|Q2UMY7.1|MAK5_ASPOR RecName: Full=ATP-dependent RNA helicase mak5
gi|83766938|dbj|BAE57078.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 757
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 15/121 (12%)
Query: 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAA 79
QEE + A++S AW L L P ++ I K+ F TS+ KA IP + R DVIG A
Sbjct: 174 QEEEDDGADVS----AWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGR-DVIGKA 228
Query: 80 ETESGKTRAFGLPALQRLLEE-REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
T SGKT AFG+P L+ LE+ R K +K E + P AL+++PTRELA Q
Sbjct: 229 STGSGKTLAFGIPILEYYLEKLRSKT-----QKDSEKTETTPI----ALVLSPTRELAHQ 279
Query: 139 V 139
+
Sbjct: 280 L 280
>gi|82794666|ref|XP_728531.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23484925|gb|EAA20096.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 487
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 31/135 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L + L+K +Y+L F+ T I K IP LA + K ++ +ET SGKT AF LP L+
Sbjct: 46 WSDLHISKPLLKVLYELKFENPTYIQKDVIP-LALEGKSILANSETGSGKTLAFVLPMLE 104
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLR-----------ALIINPTRELALQVLMVAS 144
RLL Y+P LR AL++ PTRELA+Q V +
Sbjct: 105 RLL-------------------YSPNIKLRRENRKSICITKALVLLPTRELAMQCYEVIN 145
Query: 145 PSLKSNSLTLAMAAG 159
+K + +T ++ G
Sbjct: 146 NLIKYSPITCSLFCG 160
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVGGR-DVMGAAQTGTGKTAGF 69
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLK 148
LP +Q LL E +A +P H +RALI+ PTRELA QV + K
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 SNSLTLAMAAG 159
+L A+ G
Sbjct: 117 YTALRSAVVFG 127
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++ ++GF+E++ I A IP L Q KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIP-LTMQGKDIIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ ++ R + +++ +II PTRELA+QV
Sbjct: 63 K-IDHRSR-------------------NIQGIIIAPTRELAIQV 86
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P ++++I +LGF+E+T I IP +A Q KD+IG A+T +GKT AFG+P +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIP-IALQGKDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ EK +RALI+ PTRELA+QV
Sbjct: 63 KIARNDEK--------------------IRALIMAPTRELAIQV 86
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVGGR-DVMGAAQTGTGKTAGF 69
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLK 148
LP +Q LL E +A +P H +RALI+ PTRELA QV + K
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 SNSLTLAMAAG 159
+L A+ G
Sbjct: 117 YTALRSAVVFG 127
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALTESGYTRPTPIQAAAIPVVVGGR-DVMGAAQTGTGKTAGF 69
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLK 148
LP +Q LL E +A +P H +RALI+ PTRELA QV + K
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 149 SNSLTLAMAAG 159
+L A+ G
Sbjct: 117 YTALRSAVVFG 127
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++ ++GF+E++ I A IP L Q KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIP-LTMQGKDIIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ ++ R + +++ +II PTRELA+QV
Sbjct: 63 K-IDHRSR-------------------NIQGIIIAPTRELAIQV 86
>gi|298712672|emb|CBJ48697.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 806
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
+ LHP L+ +++ GF + T I + +P RKD+IGAAET SGKT AFGLP L +L
Sbjct: 358 VELHPALLWHLHRQGFHDPTPIQRRVLPKAVLGRKDIIGAAETGSGKTLAFGLPVLSEIL 417
Query: 99 ---------EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + + +GEE E L+AL++ PTRELALQV
Sbjct: 418 TRRDAAAAAARLAEGEEADQGEGEEEEGEGLHEGLQALVLCPTRELALQV 467
>gi|16125088|ref|NP_419652.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 476
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 16/104 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L L+K++ + G+KE T I IP + Q KD++G A+T +GKT AF LP LQ
Sbjct: 4 FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVL-QGKDLLGIAQTGTGKTAAFALPILQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E+R K AP+ R L+++PTRELA Q+
Sbjct: 63 RLAEDR---------------KPAPRRGCRCLVLSPTRELATQI 91
>gi|417838712|ref|ZP_12484950.1| cold-shock DEAD-box protein A [Lactobacillus johnsonii pf01]
gi|338762255|gb|EGP13524.1| cold-shock DEAD-box protein A [Lactobacillus johnsonii pf01]
Length = 484
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEEKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A+II PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIIIEPTRELAIQ 84
>gi|448121647|ref|XP_004204262.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
gi|358349801|emb|CCE73080.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
Length = 578
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 24/139 (17%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D ++E+ L +K+I LGF + T + IP L R DV+GAA+T SGKT AF +PA
Sbjct: 114 DKFDEIGLSEPTLKAIKDLGFSKMTEVQSRTIPPLLAGR-DVLGAAKTGSGKTLAFLIPA 172
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + K+ P+ +II+PTRELALQ+ VA + ++ T
Sbjct: 173 IELLY----------------SLKFKPRNGTGVIIISPTRELALQIFGVARELMAHHTQT 216
Query: 154 LAMAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 217 FGIVIGG-------ANRRQ 228
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 30 STEFDA-WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+T DA +++ L P ++K+I + G+ T I IP + R DV+GAA+T +GKT +
Sbjct: 6 ATSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGR-DVMGAAQTGTGKTAS 64
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSL 147
F LP +QRLL + +A +P H +RALI+ PTRELA QV
Sbjct: 65 FSLPIIQRLLPQANSSA-------------SPARHPVRALILTPTRELADQVAANVHAYA 111
Query: 148 KSNSLTLAMAAGSPLLTSEHSNRRK 172
K +L A+ G + S+ + R+
Sbjct: 112 KHTALRSAVVFGGVDMNSQMAELRR 136
>gi|71003417|ref|XP_756389.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
gi|46095767|gb|EAK81000.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
Length = 957
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 30/149 (20%)
Query: 18 DAQEELVNEAEISTEF-DAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQ---- 71
D Q++ +EAE + AW+ L LH L +++ GFK+ T I + IP AL Q
Sbjct: 224 DLQDDEADEAEFDDKLLPAWSHLALHSDLKRALLHKGFKQPTEIQRKAIPFALGLQQEAT 283
Query: 72 ---------------------RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110
++DV+G ++T SGKT A+GLP L L E E A
Sbjct: 284 SSDDSEDTADSAAIGAPSTRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIASSCR 343
Query: 111 KGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + P G ALI+ PTRELALQV
Sbjct: 344 RNAVDDLPPPLG---ALILCPTRELALQV 369
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALSGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ R + L+ L+I PTRELA+Q
Sbjct: 62 KIDTNRHE--------------------LQGLVIAPTRELAIQ 84
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL L P L K++ ++G++ T I IP + R DV+GAA+T +GKT AF LP L
Sbjct: 4 SFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGR-DVMGAAQTGTGKTAAFSLPLL 62
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRLL K E A + +RAL++ PTRELA QV
Sbjct: 63 QRLL------------KHENASTSPARHPVRALVLLPTRELADQV 95
>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|423209349|ref|ZP_17195903.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|404617207|gb|EKB14143.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
Length = 462
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 500
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + P ++++I K+GF+E+T I + IP L + +D+IG A+T +GKT AFG+P ++
Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIP-LGKEGQDIIGQAQTGTGKTVAFGIPCVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ +EEK H +AL++ PTRELA+QV
Sbjct: 63 QVV---------VEEK-----------HPQALVLTPTRELAIQV 86
>gi|406676813|ref|ZP_11083998.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
gi|404625127|gb|EKB21944.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
Length = 462
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L +HP ++++ ++GFK+ T I + IP A +D+IG A+T SGKT AF +P LQ
Sbjct: 84 FDQLGMHPQIIEACVRMGFKKPTEIQRESIPH-AIAGRDIIGLAQTGSGKTAAFAIPILQ 142
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL+ + L ALI++PTRELA Q+
Sbjct: 143 QLLQSPQP--------------------LFALILSPTRELAFQI 166
>gi|378731664|gb|EHY58123.1| hypothetical protein HMPREF1120_06141 [Exophiala dermatitidis
NIH/UT8656]
Length = 733
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 16/111 (14%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ AW +L L P+ + + +LGF T I KA +P + Q DVIG A T SGKT AFG+
Sbjct: 168 DVSAWKDLGLSPITLSQLSRLGFSNPTPIQKAAVPVIL-QGHDVIGKAVTGSGKTLAFGI 226
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAP---KGHLRALIINPTRELALQV 139
P + L E A P K L ALI+ PTRELALQ+
Sbjct: 227 PIFEAWL------------ATENAGFKGPAKTKDSLLALILAPTRELALQL 265
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F +NEL L L+K+I + GF+E+T I +A IP L DVIG A+T +GKT AFGLP
Sbjct: 9 FLKFNELGLEEDLLKAIKRSGFEEATPIQEATIP-LVLAGIDVIGQAQTGTGKTAAFGLP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LQ + + E H++A++++PTRELA+Q
Sbjct: 68 ILQHVDVKEE--------------------HIQAIVVSPTRELAIQ 93
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALVGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|380473069|emb|CCF46469.1| ATP-dependent RNA helicase HAS1 [Colletotrichum higginsianum]
Length = 605
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ E +++L L MK+I ++GF + T I + IP L KDV+GAA+T SGKT A
Sbjct: 121 VGAEAHDFSQLNLSEKTMKAIQEMGFTKMTEIQRRGIPPLL-SGKDVLGAAKTGSGKTLA 179
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L A ++ P+ ++++PTRELALQ+ VA +
Sbjct: 180 FLIPAIEML----------------HALRFKPRNGTGVIVVSPTRELALQIFGVARELMA 223
Query: 149 SNSLTLAMAAG 159
+S T + G
Sbjct: 224 HHSQTYGIVIG 234
>gi|392953157|ref|ZP_10318711.1| DEAD/DEAH box helicase domain-containing protein [Hydrocarboniphaga
effusa AP103]
gi|391858672|gb|EIT69201.1| DEAD/DEAH box helicase domain-containing protein [Hydrocarboniphaga
effusa AP103]
Length = 422
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L LHPLL+ S+ KLGF T I +P LA D+ G A+T +GK+ AF L +
Sbjct: 10 SFASLNLHPLLLSSLAKLGFDYCTPIQAQTLP-LALAGADIAGQAQTGTGKSAAFLLATM 68
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRLL + + P+G RA I+ PTRELA+Q+ A L L
Sbjct: 69 QRLLTQ---------------PRVGPEGQPRAFILAPTRELAVQIHTDAVGLGADTGLKL 113
Query: 155 AMAAG 159
A+ G
Sbjct: 114 AVCYG 118
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L++++ +GF+E+T I IP A + +DV+G A+T +GKT AFGLP L+
Sbjct: 3 FEELNLDPRLLQAVKNMGFEETTPIQAQTIP-YALEGRDVLGQAQTGTGKTAAFGLPLLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ E H++AL+I PTRELA+Q
Sbjct: 62 KIDHHTE--------------------HIQALVIAPTRELAIQ 84
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K++ + GF+E+T I IP LA +DVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKAVERSGFEEATPIQSETIP-LALSGRDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ HL+ L+I+PTRELA+Q
Sbjct: 62 KI--------------------DTSSSHLQGLVISPTRELAIQ 84
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALVGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|331217930|ref|XP_003321643.1| hypothetical protein PGTG_03180 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300633|gb|EFP77224.1| hypothetical protein PGTG_03180 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 646
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L P K+I +GF + T + IP L R DV+GAA T SGKT AF +PA++
Sbjct: 110 FSSLDLSPPTAKAIQDMGFTKMTEVQARTIPPLMTGR-DVLGAARTGSGKTLAFLIPAVE 168
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L ++ P+ +I++PTRELALQ+ VA +K +S T A
Sbjct: 169 ML----------------SRLQFKPRNGTGTIIVSPTRELALQIFGVAQELMKHHSQTFA 212
Query: 156 MAAG 159
+ G
Sbjct: 213 IVIG 216
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F +NEL L L+K+I + GF+E+T I +A IP L DVIG A+T +GKT AFGLP
Sbjct: 9 FLKFNELGLEEDLLKAIKRSGFEEATPIQEATIP-LVLAGIDVIGQAQTGTGKTAAFGLP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LQ + + E H++A++++PTRELA+Q
Sbjct: 68 ILQHVDVKEE--------------------HIQAIVVSPTRELAIQ 93
>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
Length = 503
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQAETIP-LALVGKDVIGQAQTGTGKTAAFGLPMLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ +R + L+ L+I PTRELA+Q
Sbjct: 62 KIDPDRHE--------------------LQGLVIAPTRELAIQ 84
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 18/111 (16%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F
Sbjct: 14 SVTFDTFG---LHPDILRALAESGYTRPTPIQAAAIPVVVAGR-DVMGAAQTGTGKTAGF 69
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
LP +Q LL E +A +P H +RALI+ PTRELA QV
Sbjct: 70 SLPIIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQV 107
>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 409
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L LH L+ ++ +LG+++ T I IPA+ ++DV+ A+T +GKT AF LP L
Sbjct: 2 SFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILA-KQDVMAGAQTGTGKTAAFALPVL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q+LL L+ + ++A K +RAL++ PTRELA+QV K + +
Sbjct: 61 QQLL---------LDNQSQDAPK-----DIRALVLVPTRELAVQVQQSFGKYAKGTDIRI 106
Query: 155 AMAAG 159
+A G
Sbjct: 107 GIAYG 111
>gi|70937865|ref|XP_739683.1| DEAD/DEAH box helicase [Plasmodium chabaudi chabaudi]
gi|56516861|emb|CAH80123.1| DEAD/DEAH box helicase, putative [Plasmodium chabaudi chabaudi]
Length = 451
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 31/135 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L + L+K +Y+L F+ T I K IP LA + K ++ +ET SGKT AF LP L+
Sbjct: 46 WSDLHISRPLLKVLYELKFENPTYIQKDVIP-LALEGKSILANSETGSGKTLAFVLPMLE 104
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLR-----------ALIINPTRELALQVLMVAS 144
RLL Y+P LR ALI+ PTRELA+Q V +
Sbjct: 105 RLL-------------------YSPNIKLRKENRKSVNITKALILLPTRELAMQCYDVIN 145
Query: 145 PSLKSNSLTLAMAAG 159
+K + +T ++ G
Sbjct: 146 SLIKYSPITCSLFCG 160
>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 415
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L P L+++ +GF T + A IPA+ + DV+G+A+T SGKT AF LP LQ
Sbjct: 3 FSALGLSPALVQAATAMGFSAPTPVQSAAIPAVL-RGADVLGSAQTGSGKTAAFALPLLQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL + + A + H+RALI+ PTRELA QV
Sbjct: 62 RLQADAQNAPR----------------HVRALILVPTRELAAQV 89
>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
Length = 453
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 20/105 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L LHP L+K++ +LGF T I IP A +DV+ +A T SGKT AF LP L
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPP-AMSGRDVMASAVTGSGKTAAFLLPILH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+L++ P+G RAL+I PTRELA Q+L
Sbjct: 62 QLIDR-------------------PRGTTRALVITPTRELAAQIL 87
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 23/106 (21%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L LHP + ++I +GF+E + I IP + + D+IG A+T +GKT AFG P L
Sbjct: 5 SFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVIL-EGNDIIGQAQTGTGKTLAFGAPML 63
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV 139
++ PK H+ ALI+ PTRELA+QV
Sbjct: 64 SKI---------------------TPKNKHISALILTPTRELAIQV 88
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + LHP + I LG+K T I IPA+ Q +DV+G A+T +GKT AF LP L
Sbjct: 2 SFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAII-QGRDVMGLAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+ P +RALI+ PTRELA Q+
Sbjct: 61 QRLMN-------------------GPGKMVRALIVAPTRELAEQI 86
>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 423
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L L L+ ++ +L F TS+ + IP L + KDV+ A+T +GKT AFGLP +
Sbjct: 7 SFNQLGLSEHLLATLSELNFTAPTSVQEQAIP-LVLEGKDVLAGAQTGTGKTAAFGLPII 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRL+E ++ PK +RAL++ PTRELA QV + K + +
Sbjct: 66 QRLIETKDNVIP------------NPK-LVRALVLVPTRELAQQVFDNVTSYAKGTDIKV 112
Query: 155 AMAAGSPLLTSEHSNRR 171
+A G + + N R
Sbjct: 113 VVAYGGVSMKVQTENLR 129
>gi|365538739|ref|ZP_09363914.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 421
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ L L L+ ++ LGF++ T + IP LA KDV+ A+T +GKT AFGLP L
Sbjct: 8 FQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAG--KDVMAGAQTGTGKTAAFGLPIL 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QR L+ + E+ A +RAL++ PTRELA QV S +S +L +
Sbjct: 66 QRFLD-------------NQVEREANSKVVRALVLVPTRELAQQVFDSLSAYAQSTTLKI 112
Query: 155 AMAAGSPLLTSEHSNRR 171
A G + + N R
Sbjct: 113 VTAYGGTSMQVQTRNLR 129
>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
Length = 526
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 ETNPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 23/147 (15%)
Query: 16 PDDAQEELVNEAEISTE--FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
P+D EE+ N E ST ++ L+L ++K I +L F + T I A IP +A K
Sbjct: 94 PEDTPEEIANFYEQSTHQSHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIP-IALLGK 152
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D++ A+T SGKT A+ +P ++RLL Y P + +I+ PTR
Sbjct: 153 DIVAGAQTGSGKTGAYMIPIIERLL-------------------YKPSTSTKVIILTPTR 193
Query: 134 ELALQVLMVASP-SLKSNSLTLAMAAG 159
ELALQV S N+L + +A G
Sbjct: 194 ELALQVYEFGKKLSHHVNNLNIGLAVG 220
>gi|411009458|ref|ZP_11385787.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 459
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|15667450|dbj|BAB68226.1| putative autoaggregation-mediating protein [Enterococcus faecium]
Length = 210
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 57/104 (54%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KS+ + GF+E+T I IP LA KDVIG A+T +GKT AFGLP L
Sbjct: 3 FKELELSPELLKSVERAGFEEATPIQSETIP-LALAGKDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQ 138
EK P H L+ L+I PTRELA+Q
Sbjct: 61 --------------------EKIDPDRHELQGLVIAPTRELAIQ 84
>gi|402219014|gb|EJT99089.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 658
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L +HP L++ + L F + T I PAL R DVIG AET SGKT AFG+PALQ
Sbjct: 232 FSQLPVHPTLLEHLLSLKFSQPTPIQACAWPALLEGR-DVIGIAETGSGKTLAFGVPALQ 290
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-MVASPSLKSNSLTL 154
L+ G+ ++ K ++ L++ PTRELALQ ++S S L++
Sbjct: 291 SLVSN--------TPAGKPSKS---KPSIKVLVVAPTRELALQTHDTLSSLSAPFKLLSV 339
Query: 155 AMAAGSP 161
+ G P
Sbjct: 340 PLYGGVP 346
>gi|423196519|ref|ZP_17183102.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
gi|404632256|gb|EKB28883.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
Length = 459
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 19/106 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRLL + + +RAL++ PTRELA QV
Sbjct: 60 LQRLLANHGRGRR----------------QVRALVLTPTRELAAQV 89
>gi|448124024|ref|XP_004204815.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
gi|358249448|emb|CCE72514.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
Length = 578
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 24/139 (17%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D ++E+ L +K+I LGF + T + IP L R DV+GAA+T SGKT AF +PA
Sbjct: 114 DKFDEIGLSEPTLKAIKDLGFSKMTEVQSRTIPPLLAGR-DVLGAAKTGSGKTLAFLIPA 172
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + K+ P+ +II+PTRELALQ+ VA + ++ T
Sbjct: 173 IELLY----------------SLKFKPRNGTGVIIISPTRELALQIFGVARELMAHHTQT 216
Query: 154 LAMAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 217 FGIVIGG-------ANRRQ 228
>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
Length = 712
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L PLL+++I K G+ T + K IP + + R D++G A+T SGKT AF LP L
Sbjct: 271 SFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGR-DIMGCAQTGSGKTAAFLLPML 329
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM----VASPSLKSN 150
+L + + EE + P G L+I PTRELA+Q++ + S+
Sbjct: 330 HHIL-DNNCPSNAFEEPAQ------PTG----LVICPTRELAIQIMREARKFSHSSVAKC 378
Query: 151 SLTLAMAAGSPLLTSEHS 168
+ AAG L + HS
Sbjct: 379 CVAYGGAAGFHHLKTIHS 396
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 25/149 (16%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E +++FD +++++ L ++K+I LGFK+ T I KA +P R D+ A T +G
Sbjct: 189 EDASQFDDQLSFDDMNLSRPILKAITALGFKQPTPIQKACVPVSLLGR-DLCACAATGTG 247
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 248 KTAAFMLPVLERLI-------------------YKPRTSQVTRVLVLVPTRELGIQVHSV 288
Query: 143 ASPSLKSNSLTLAMAAGSPLLTSEHSNRR 171
A + S+T +A G L S+ + R
Sbjct: 289 ARQLAQFTSITTCLAVGGLDLKSQEAALR 317
>gi|302407546|ref|XP_003001608.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
gi|261359329|gb|EEY21757.1| ATP-dependent RNA helicase MAK5 [Verticillium albo-atrum VaMs.102]
Length = 787
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 24 VNEAEISTE---FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
+ EAE TE W L L P + +I +L F + T+I A IP + DVIG A
Sbjct: 211 LEEAEDDTEDLDMSEWMGLNLSPATIATIRRLKFTKPTTIQCAAIPHI-QAGHDVIGKAS 269
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFG+P + + LE+ + E + E AP ALII+PTRELA Q++
Sbjct: 270 TGSGKTLAFGIPIVDKWLEKNGEEQDSAMETDDAPEAKAP----LALIISPTRELAHQIM 325
>gi|223590217|sp|A5DID7.2|HAS1_PICGU RecName: Full=ATP-dependent RNA helicase HAS1
gi|190346774|gb|EDK38940.2| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
6260]
Length = 569
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 24/139 (17%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D + +L L M++I +GF++ T + + IP L R DV+GAA+T SGKT AF +PA
Sbjct: 105 DKFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPA 163
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + K+ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 164 IEMLY----------------SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQT 207
Query: 154 LAMAAGSPLLTSEHSNRRK 172
L + G +NRR+
Sbjct: 208 LGIVIGG-------ANRRQ 219
>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
voltae A3]
gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
Length = 584
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + +M+ + + GF E+T I + IP + DV+G A+T +GKT AFG+P +Q
Sbjct: 3 FRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
++ E+ +EE G + +K ++A+I+ PTRELALQV K N L L
Sbjct: 63 KIQEK-------IEENGRKNKK-----AVKAIILTPTRELALQVHDEIDSVNKGNKLRLC 110
Query: 156 MAAG 159
G
Sbjct: 111 TVYG 114
>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 434
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 20/138 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L ++ ++ +LGFKE+T I + IP L Q DV+ A+T +GKT AFGLP +
Sbjct: 18 SFASLGLTKQILTTVAELGFKEATPIQEQAIP-LVLQGHDVLAGAQTGTGKTAAFGLPLI 76
Query: 95 QRLLE---EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
QRL+E ER + +K+ +R+LI+ PTRELA QV ++
Sbjct: 77 QRLIESPIERHEESKV----------------VRSLILTPTRELAQQVFDSLVSYTQNTE 120
Query: 152 LTLAMAAGSPLLTSEHSN 169
L + +A G + + N
Sbjct: 121 LKVVVAYGGTSINVQKEN 138
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 55/105 (52%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
W +L L +L K+ L +KE T I + IP L Q KDVIG AET SGKT AF LP L
Sbjct: 19 TWKDLGLVDILCKTCLDLKWKEPTRIQQEAIP-LTLQGKDVIGLAETGSGKTAAFALPIL 77
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q LLE P+ + ALI+ PTRELA Q+
Sbjct: 78 QALLEN-------------------PQRYF-ALILTPTRELAFQI 102
>gi|425778251|gb|EKV16391.1| ATP dependent RNA helicase, putative [Penicillium digitatum Pd1]
gi|425780471|gb|EKV18477.1| ATP dependent RNA helicase, putative [Penicillium digitatum PHI26]
Length = 771
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW+ L L P ++ K+ F ++I KA IPA+ DV+G A T SGKT AFG+P +
Sbjct: 193 AWDGLNLSPETFTALSKMKFSSPSAIQKASIPAILDGH-DVVGKASTGSGKTLAFGIPII 251
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L++R K+ E+ + +P ALI++PTRELA Q+
Sbjct: 252 EHYLDKR---GKLREQSDTSEQNKSPI----ALILSPTRELAHQL 289
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
LMK++ LGF + T I + IP +A KDV+G A T SGKT AF +P ++RLL
Sbjct: 205 LMKAVTNLGFNKPTPIQASTIP-VALLGKDVVGNAVTGSGKTAAFMIPMIERLL------ 257
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLT 164
EKG++A +R L++ PTRELA+Q V + + L + G L
Sbjct: 258 ---FREKGKKA------AAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLK 308
Query: 165 SEHSN-RRKPN 174
S+ ++ R +P+
Sbjct: 309 SQEADLRSRPD 319
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
AE + FD N L L+K+I GF E T I IP LA +D+ + T +GKT
Sbjct: 137 AETAISFDQMN---LSRALLKAITACGFTEPTRIQSTCIP-LALAGRDLCACSATGTGKT 192
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP--KGHLRALIINPTRELALQVLMVAS 144
AF LP L+RLL Y P K R +++ PTRELA+Q V+
Sbjct: 193 AAFMLPVLERLL-------------------YRPQQKAMTRVVVLTPTRELAIQTFQVSR 233
Query: 145 PSLKSNSLTLAMAAGS-PLLTSEHSNRRKPN 174
+ + + + AG L T E + R++P+
Sbjct: 234 QLSQFMRIDICLCAGGLDLKTQEAALRQRPD 264
>gi|344301778|gb|EGW32083.1| ATP-dependent rRNA helicase SPB42 [Spathaspora passalidarum NRRL
Y-27907]
Length = 617
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 31 TEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
TE AW LR LHP L +I LGF T + + +P L+ KDV+ A T SGKT A
Sbjct: 5 TESLAWENLRYDLHPWLRSAIESLGFATMTPVQASTVPLLSGN-KDVVVEAVTGSGKTLA 63
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAP--KGHLRALIINPTRELALQVLMV 142
F +P LQ++ +R + ++ + P +GH+ A+I++PTRELA Q+ V
Sbjct: 64 FSIPVLQKV-SDRIYGRGGGDNDDDDEDTVEPVKRGHMLAVILSPTRELAAQIQTV 118
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
LMK++ LGF + T I + IP +A KDV+G A T SGKT AF +P ++RLL
Sbjct: 205 LMKAVTNLGFNKPTPIQASTIP-VALLGKDVVGNAVTGSGKTAAFMIPMIERLL------ 257
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLT 164
EKG++A +R L++ PTRELA+Q V + + L + G L
Sbjct: 258 ---FREKGKKA------AAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLK 308
Query: 165 SEHSN-RRKPN 174
S+ ++ R +P+
Sbjct: 309 SQEADLRSRPD 319
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+NEL + LMKSI K+GF+E+T I IP LA + DVIG A+T +GKT AFG+P +
Sbjct: 3 AFNELGISQDLMKSISKMGFEEATPIQSQTIP-LALEGHDVIGQAQTGTGKTAAFGIPLI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + + E +++ ++I PTRELA+QV
Sbjct: 62 ENVDVKDE--------------------NIQGIVIAPTRELAIQV 86
>gi|336125600|ref|YP_004577556.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343317|gb|AEH34599.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 421
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ L L L+ ++ LGF++ T + IP LA KDV+ A+T +GKT AFGLP L
Sbjct: 8 FQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAG--KDVMAGAQTGTGKTAAFGLPIL 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QR L+ +AE+ A +RAL++ PTRELA QV S + +L +
Sbjct: 66 QRFLD-------------NQAEREANSKVVRALVLVPTRELAQQVFDSLSAYAQGTTLKI 112
Query: 155 AMAAGSPLLTSEHSNRR 171
A G + + N R
Sbjct: 113 VTAYGGTSMQVQTRNLR 129
>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
Length = 484
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A+II PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIIIEPTRELAIQ 84
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+K+I + GF+E+T I +A IP L DVIG A+T +GKT AFGLP LQ
Sbjct: 3 FNELGLEEDLLKAIKRSGFEEATPIQEATIP-LVLAGIDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ + E H++A++I+PTRELA+Q
Sbjct: 62 HVDVKEE--------------------HIQAIVISPTRELAIQ 84
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+K++ +GF T I + IP LA Q D+IG A+T +GKT AFG+P L
Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIP-LAMQGIDLIGQAQTGTGKTAAFGIPLLS 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ EKG +A ++ALI+ PTRELALQV
Sbjct: 63 KI------------EKGNKA--------VQALILAPTRELALQV 86
>gi|118572555|sp|Q0UR48.1|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
Length = 610
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L M++I +GF+ T I + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 133 FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLL-SGKDVLGAAKTGSGKTLAFLIPAIE 191
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + ++ P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 192 ML----------------SSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFG 235
Query: 156 MAAG 159
+ G
Sbjct: 236 IVIG 239
>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
Length = 484
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A+II PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIIIEPTRELAIQ 84
>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
gi|341940504|sp|Q921N6.3|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
Length = 760
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 233
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 234 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 276
Query: 145 PSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 277 QLAQFCSITTCLAVG 291
>gi|399114783|emb|CCG17579.1| ATP-dependent rna helicase [Taylorella equigenitalis 14/56]
Length = 581
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + L+KS+ ++ F+ T + IP LA + KD+I +A+T SGKT AF LP++Q
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIP-LALKGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 96 RLLEEREK-------AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL E E A+K +++ +E PK ++ L++ PTRELA+QV
Sbjct: 65 QLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQV 115
>gi|328771868|gb|EGF81907.1| hypothetical protein BATDEDRAFT_10092 [Batrachochytrium
dendrobatidis JAM81]
Length = 529
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 19 AQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGA 78
+ E +V+ ++ ++ W E L+ L+++++KLGF T I + + KD+IGA
Sbjct: 134 SDEPIVDHYKVPSD-SKWLEFGLNLQLVQTLHKLGFSCPTDIQAKSLENTLVRHKDIIGA 192
Query: 79 AETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
AET SGKT AFGLP L L + +K P LII PTRELA+Q
Sbjct: 193 AETGSGKTLAFGLPILHHLAIQLQK---------------NPNTACIGLIITPTRELAIQ 237
Query: 139 V 139
V
Sbjct: 238 V 238
>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
Length = 484
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A+II PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIIIEPTRELAIQ 84
>gi|146418687|ref|XP_001485309.1| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
6260]
Length = 569
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 24/139 (17%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D + +L L M++I +GF++ T + + IP L R DV+GAA+T SGKT AF +PA
Sbjct: 105 DKFEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPA 163
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + K+ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 164 IEMLY----------------SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQT 207
Query: 154 LAMAAGSPLLTSEHSNRRK 172
L + G +NRR+
Sbjct: 208 LGIVIGG-------ANRRQ 219
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 20/133 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W +L L + K+I K GF + T I + IP + KDV+ + T SGKT AF +P LQ
Sbjct: 26 WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIM-DGKDVVAMSRTGSGKTAAFVIPMLQ 84
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L KG + KG +RAL+++PTRELALQ V + L A
Sbjct: 85 KL-------------KGRDT-----KG-IRALMVSPTRELALQTFKVVKELGRFTGLRCA 125
Query: 156 MAAGSPLLTSEHS 168
G +L + S
Sbjct: 126 CLVGGDVLEDQFS 138
>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 474
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 15/114 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E+ LHP ++K++ G+ E T + + IP A + +D++ +++T SGKT AF LPAL
Sbjct: 3 FAEIGLHPAILKALTDSGYSEPTPVQQQAIPP-AIEGRDLMVSSQTGSGKTAAFMLPALH 61
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGH---------LRALIINPTRELALQV 139
R L+ER A E+G P+GH R L++ PTRELALQV
Sbjct: 62 RFALQERPAAVPRPSERGAA----RPRGHDRQRFQAAQPRMLVLTPTRELALQV 111
>gi|449550754|gb|EMD41718.1| hypothetical protein CERSUDRAFT_79353 [Ceriporiopsis subvermispora
B]
Length = 561
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL L M+++ ++GF T I + IPAL R DV+GAA T SGKT AF +PA+
Sbjct: 22 SFSELELSEPTMRALQEMGFTTMTPIQEKSIPALLTGR-DVLGAARTGSGKTLAFLIPAI 80
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L K+ P+ +I++PTRELALQ+ VA + +S T
Sbjct: 81 ELL----------------HRMKFKPRNGTGIIIVSPTRELALQIFGVAKELMAHHSQTF 124
Query: 155 AMAAG 159
+ G
Sbjct: 125 GIVMG 129
>gi|397662367|ref|YP_006503067.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
gi|394350546|gb|AFN36460.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
Length = 581
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + L+KS+ ++ F+ T + IP LA + KD+I +A+T SGKT AF LP++Q
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIP-LALKGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 96 RLLEEREK-------AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL E E A+K +++ +E PK ++ L++ PTRELA+QV
Sbjct: 65 QLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQV 115
>gi|395238726|ref|ZP_10416635.1| RNA helicase DeaD [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477247|emb|CCI86612.1| RNA helicase DeaD [Lactobacillus gigeriorum CRBIP 24.85]
Length = 493
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNEALLKAIKRSGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+L EK AK ++ A+++ PTRELA+Q
Sbjct: 62 QL----EKHAKAIQ----------------AIVVEPTRELAIQ 84
>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
Length = 527
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
Length = 527
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 19/105 (18%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
+ LH L K++ K GFK+ T I + IP L + +DV+G A T SGKT AF +P +Q+L
Sbjct: 273 MDLHKFLFKAVMKKGFKQPTPIQRLTIP-LILEGQDVVGMARTGSGKTAAFVIPMIQKLA 331
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
+ K RA+I++PTRELALQ V
Sbjct: 332 QHSHKVGA------------------RAIILSPTRELALQTYRVV 358
>gi|358392732|gb|EHK42136.1| hypothetical protein TRIATDRAFT_251604 [Trichoderma atroviride IMI
206040]
Length = 468
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
M++I ++GF + TSI ++ IP L KDV+GAA+T SGKT AF +PA++ L
Sbjct: 1 MRAIQEMGFTKMTSIQRSAIPPLL-AGKDVLGAAKTGSGKTLAFLIPAIEIL-------- 51
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ ++ P+ ++++PTRELALQ+ VA +K +S T + G
Sbjct: 52 --------SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMKHHSQTYGIVIG 97
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
+ + I T +++ LHP +++++ + G+ T I +P + R DV+GAA+T
Sbjct: 1 MTDTTHIDTPAPTFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGR-DVMGAAQTG 59
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
+GKT AF LP L RL++ +A +P H +RALI+ PTRELA QV
Sbjct: 60 TGKTAAFTLPILHRLMQFANTSA-------------SPARHPVRALILTPTRELADQV 104
>gi|255944023|ref|XP_002562779.1| Pc20g02210 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587514|emb|CAP85550.1| Pc20g02210 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 692
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 12/124 (9%)
Query: 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAET 81
E +E E TE W L LHP++++++ G++ T++ IPA+ DVI A+T
Sbjct: 133 ESASEIESVTE---WVNLGLHPVMLENVRLCGYEHPTAVQSYAIPAVL-ANLDVIAVAQT 188
Query: 82 ESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK-GHLRA----LIINPTRELA 136
SGKT AF +P L +L+ KA K+ + AE++ P+ +RA LI+ PTRELA
Sbjct: 189 GSGKTGAFLIPILSKLM---GKARKLAAPRPNTAERFNPREDAVRAEPLVLIVCPTRELA 245
Query: 137 LQVL 140
Q+
Sbjct: 246 TQIF 249
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P ++++I +LGF+E+T I IP +A Q +D+IG A+T +GKT AFG+P +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIP-IALQGRDMIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ EK +RALI+ PTRELA+QV
Sbjct: 63 KISRSDEK--------------------IRALIMAPTRELAIQV 86
>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
Length = 527
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452744146|ref|ZP_21943995.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452745636|ref|ZP_21945469.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452086238|gb|EME02628.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452087771|gb|EME04145.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
Length = 444
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 17/129 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T+ + EL L P L+K++ G+ T+I +A IPA A + +D++G+A T +GKT AF
Sbjct: 2 TQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPA-ALEGRDLLGSAPTGTGKTAAFL 60
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LPA+Q LL+ + G R LI+ PTRELA+QV A K
Sbjct: 61 LPAIQHLLDYPRRKP----------------GAPRILILTPTRELAMQVAEQAQALAKFT 104
Query: 151 SLTLAMAAG 159
L++A G
Sbjct: 105 QLSIATITG 113
>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
gi|12643712|sp|Q07886.2|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
Short=DEAD box protein 45A
gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
Length = 521
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 475
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 16/104 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+K++ + G+KE T I IP + Q KD++G A+T +GKT AF LP LQ
Sbjct: 4 FADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVL-QGKDLLGIAQTGTGKTAAFALPILQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E+R K AP+ R L+++PTRELA Q+
Sbjct: 63 RLAEDR---------------KPAPRRGFRCLVLSPTRELATQI 91
>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
Length = 581
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + L+KS+ ++ F+ T + IP LA + KD+I +A+T SGKT AF LP++Q
Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIP-LALKGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 96 RLLEEREK-------AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL E E A+K +++ +E PK ++ L++ PTRELA+QV
Sbjct: 65 QLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQV 115
>gi|453089379|gb|EMF17419.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 687
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 15/123 (12%)
Query: 19 AQEELVNEAE-ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVI 76
A LV E+E + WN L+L P M S+ KL F + T I + IP LA DVI
Sbjct: 163 AFSRLVEESEDTGVDVSQWNPLKLSPDTMASLSKLRFTKPTPIQQHVIPEVLAGH--DVI 220
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
G A T SGKT AFG+P L+R LE ++ +KG+ G L AL+++PTRELA
Sbjct: 221 GKASTGSGKTLAFGIPILERFLESSQQ-----RKKGKSG-----SGPL-ALLLSPTRELA 269
Query: 137 LQV 139
Q+
Sbjct: 270 HQL 272
>gi|156404211|ref|XP_001640301.1| predicted protein [Nematostella vectensis]
gi|156227434|gb|EDO48238.1| predicted protein [Nematostella vectensis]
Length = 566
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W L + P +++++ GF + T I IP +D+IGAAET SGKT AFG+P +Q
Sbjct: 4 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
+ E K K + ++ +G+ L ALI+ PTRELALQV
Sbjct: 64 HI--EAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQV 106
>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
Length = 649
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 12/142 (8%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L L L+K+++ +G+K + SI+++++ +A + KD++ AET SGK+ AF +P LQ
Sbjct: 127 WSDLGLSRSLIKAVFDMGYK-APSIIQSKVIPVALEGKDLLATAETGSGKSAAFLIPTLQ 185
Query: 96 RLLEEREKAAKMLEEKGEEAEKYA-PKGHLRALIINPTRELALQ---VLMVASPSLKSNS 151
RL+ A ++++K + + + +ALI+ PTRELA Q V + + +L N
Sbjct: 186 RLI-----TAGVIKQKDVDLTRGGNQRVGTKALILLPTRELAAQCYDVFLALTQNLTQNG 240
Query: 152 LTLAMAAGSPLLTSEHSNRRKP 173
+ + G P+ E RR P
Sbjct: 241 VLI--TGGVPVKEQEAKLRRMP 260
>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 539
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 24/142 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ EL + +++SI +LG+K+ T+I + +P A Q++D+IG +ET SGKT F +P L
Sbjct: 133 SFRELNICEEILQSIEELGWKKPTAIQRKMLP-FAFQKRDIIGLSETGSGKTACFIIPIL 191
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-- 152
Q L E+R+ AL+I+PTREL +Q+ +L SN L
Sbjct: 192 QELREKRQS--------------------FFALVISPTRELCIQIAQ-HFQALGSNLLIN 230
Query: 153 TLAMAAGSPLLTSEHSNRRKPN 174
+ G ++T + +KPN
Sbjct: 231 ICTIFGGVDIVTQSLNLAKKPN 252
>gi|407068274|ref|ZP_11099112.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 423
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L L L+ ++ +L F TS+ + IP L + KDV+ A+T +GKT AFGLP +
Sbjct: 7 SFNQLGLSEHLLATLAELNFTAPTSVQEQAIP-LVLEGKDVLAGAQTGTGKTAAFGLPII 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRL+E ++ PK +RAL++ PTRELA QV + K + +
Sbjct: 66 QRLIETKDNIIP------------NPK-LVRALVLVPTRELAQQVFDNVTEYAKGTDIKV 112
Query: 155 AMAAGSPLLTSEHSNRR 171
+A G + + N R
Sbjct: 113 VVAYGGVSMKVQTDNLR 129
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 22/103 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE+ L L+++I ++GF+E+T I IP +A + KDV G A+T +GKT AFGLP L+
Sbjct: 3 FNEMNLSKPLLRAIEEMGFEEATPIQAQTIP-MALEGKDVFGQAQTGTGKTAAFGLPLLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ E G ++ALII PTRELA+Q
Sbjct: 62 KVHE---------------------TGGVQALIIEPTRELAVQ 83
>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
Length = 522
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFG 90
E + + L L P L+K + KLG K +T I + IPA LA Q D IGAA+T SGKT AF
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQ--DCIGAAKTGSGKTFAFA 62
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSL 147
LP L+RL EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 63 LPILERLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAM 102
Query: 148 KSNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 103 GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 21/135 (15%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D + ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 175 EDASEYDKSLTFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 233
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 234 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 276
Query: 145 PSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 277 QLAQFCSITTCLAVG 291
>gi|104773512|ref|YP_618492.1| DEAD/DEAH box helicase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815106|ref|YP_005851497.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|418035206|ref|ZP_12673664.1| hypothetical protein LDBUL1519_00364 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|354690624|gb|EHE90568.1| hypothetical protein LDBUL1519_00364 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 483
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ EL L+ ++K+I + GF+E+T I IP ALA Q DVIG A+T +GKT AFGLP L
Sbjct: 3 FTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQ--DVIGQAQTGTGKTAAFGLPIL 60
Query: 95 QRL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
Q+L L+++E+A ++A++I PTRELA+Q
Sbjct: 61 QKLDLDKQEQA-------------------IQAIVIEPTRELAIQ 86
>gi|393212749|gb|EJC98248.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 16/104 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ LH L+ +++ F T I ++ IP +A + KDV+G A+T SGKT A+GLP L
Sbjct: 120 WSDFSLHARLLSALHSQKFATPTPIQRSAIP-VALKGKDVVGVAQTGSGKTLAYGLPILN 178
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LL+ M KG K L+AL++ PTRELALQV
Sbjct: 179 HLLQ-------MGRPKG--------KRPLQALVLAPTRELALQV 207
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+KS+ +GF+E+T I + IP LA + KDVIG A+T +GKT AFG+P +Q
Sbjct: 4 FKELGLSEPLIKSVLNMGFEEATPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGIPLIQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E E ++ +++ PTRELA+QV
Sbjct: 63 KIAETSED--------------------IQGIVLTPTRELAVQV 86
>gi|115492529|ref|XP_001210892.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
gi|121742586|sp|Q0CZS8.1|HAS1_ASPTN RecName: Full=ATP-dependent RNA helicase has1
gi|114197752|gb|EAU39452.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
Length = 576
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 21/146 (14%)
Query: 18 DAQEELVNEAEISTEFDA----WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
DA+ L + +S DA ++EL L MK+I ++GF+ T I + IP R
Sbjct: 78 DAEAPLPSTMGLSLPTDAAPQKFDELNLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGR- 136
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D++GAA+T SGKT AF +PA++ L A ++ P+ +II PTR
Sbjct: 137 DILGAAKTGSGKTLAFLIPAVEML----------------SALRFKPRNGTGVIIITPTR 180
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
ELALQ+ VA + +S T + G
Sbjct: 181 ELALQIFGVAKELCEFHSQTYGIVIG 206
>gi|341038385|gb|EGS23377.1| ATP-dependent RNA helicase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 556
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 19/125 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
++EL L K+I ++GF + T I + IP ALA KDV+GAA+T SGKT AF +PA+
Sbjct: 113 FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAG--KDVLGAAKTGSGKTLAFLIPAV 170
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + ++ P+ A+++ PTRELALQ+ VA +K +S T
Sbjct: 171 EML----------------SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKYHSQTY 214
Query: 155 AMAAG 159
+ G
Sbjct: 215 GVVIG 219
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I +LGF+E+T I IP L Q KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKAINRLGFEEATPIQAETIP-LGLQHKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 481
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ EL L+ ++K+I + GF+E+T I IP ALA Q DVIG A+T +GKT AFGLP L
Sbjct: 3 FTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQ--DVIGQAQTGTGKTAAFGLPIL 60
Query: 95 QRL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
Q+L L+++E+A ++A++I PTRELA+Q
Sbjct: 61 QKLDLDKQEQA-------------------IQAIVIEPTRELAIQ 86
>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
Length = 441
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + EL L P L++++ K G+K T+I + IP A + +DV+G+A T +GKT AF L
Sbjct: 3 ELTTFEELDLSPELLQALEKKGYKRPTAIQQETIPP-AMEGRDVLGSAPTGTGKTAAFLL 61
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
PALQ LL+ + G R LI+ PTRELA+QV A + S
Sbjct: 62 PALQHLLDHPRRKP----------------GPPRILILTPTRELAMQVAEQAEELTQFTS 105
Query: 152 LTLAMAAG 159
L +A G
Sbjct: 106 LKIATITG 113
>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 423
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N+L L L+ ++ +L F TS+ + IP L + KDV+ A+T +GKT AFGLP +
Sbjct: 7 SFNQLGLSEHLLATLSELNFTAPTSVQEQAIP-LVLEGKDVLAGAQTGTGKTAAFGLPII 65
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
QRLL ++ PK +RAL++ PTRELA QV + K L +
Sbjct: 66 QRLLATKDNVIP------------NPK-LVRALVLVPTRELAQQVFDNVTSYAKGTDLKV 112
Query: 155 AMAAGSPLLTSEHSNRR 171
+A G + + N R
Sbjct: 113 VVAYGGVSMKVQTDNLR 129
>gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 423
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L PLL+ ++ + G++ +T + +A IP LA +DV+ +AET +GKT AF LP L
Sbjct: 2 SFTSLGLPPLLLDAVNQSGYQTATPVQQAVIP-LALDGRDVLASAETGTGKTAAFALPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+ ++ P LRALI+ PTRELA+Q+
Sbjct: 61 SHLM-------------NQDHSDLLPANRLRALIMTPTRELAIQI 92
>gi|354480665|ref|XP_003502525.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Cricetulus
griseus]
Length = 788
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++E+D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 202 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 260
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 261 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 303
Query: 145 PSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 304 QLAQFCSVTTCLAVG 318
>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
Length = 424
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 17/105 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL +HP ++K+ ++G+ T I + IP + R D++G A+T +GKT AF LP L
Sbjct: 3 FNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGR-DLLGLAQTGTGKTAAFALPILD 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+L+++ +KG+ A ++AL++ PTRELA+Q++
Sbjct: 62 QLMKQ--------PQKGKRA--------IKALVLTPTRELAIQIV 90
>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
Length = 560
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 24/127 (18%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
+K+I ++GFK+ T + IP L R DV+GAA+T SGKT AF LPA++ L
Sbjct: 108 LKAIRQMGFKKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLLPAIELLY------- 159
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165
+ K+ P+ +II+PTRELALQ+ VA ++ ++ T + G
Sbjct: 160 ---------SLKFKPRNGTGVVIISPTRELALQIFGVARELMEHHTQTFGIVIGG----- 205
Query: 166 EHSNRRK 172
+NRR+
Sbjct: 206 --ANRRQ 210
>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
Length = 506
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+++ L L P L K + K+G K++T I K+ IPA+ +D IGAA+T SGKT AF LP
Sbjct: 7 NSFQALGLRPWLAKQLTKVGLKDATPIQKSCIPAILSG-QDCIGAAKTGSGKTFAFALPI 65
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
L++L EE P H AL++ PT ELA Q+ S
Sbjct: 66 LEKLSEE-------------------PVSHF-ALVLTPTHELAYQI---------SEQF- 95
Query: 154 LAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQPKTTTLLPSSLA 210
+ AG P+ R GG D+ ++S K + +P +P LA
Sbjct: 96 --LVAGQPM-----------GVRVCVVSGGTDQMIESQKL--MQRPHIVVAMPGRLA 137
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W +L L + K+I K GF + T I + IP + KDV+ + T SGKT AF +P LQ
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIM-DGKDVVAMSRTGSGKTAAFVIPMLQ 84
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L KG + KG +RAL+++PTRELALQ V + L A
Sbjct: 85 KL-------------KGRDT-----KG-IRALMVSPTRELALQTFKVVKELGRFTGLRCA 125
Query: 156 MAAGSPLLTSEHSN 169
G +L + S
Sbjct: 126 CLVGGDVLEEQFST 139
>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
Length = 423
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L+ L+ ++ + G+ ++T I + IP L + KD++G A+T +GKT AF LP LQ
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNN-KDLLGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++E EK KG ++ALI+ PTRELA+Q+
Sbjct: 62 NIME----------------EKTIGKGAIKALILAPTRELAIQI 89
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L P L++ + +LG+ + T I IPA LA Q D++ A+T SGKT AF LP L
Sbjct: 13 FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQ--DIMAGAQTGSGKTAAFALPIL 70
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L A++ +K EA+ A K +RAL++ PTRELALQV
Sbjct: 71 NKL------TAQICLQK-TEAQDSADKPAIRALVLTPTRELALQV 108
>gi|406606941|emb|CCH41663.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 578
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 20/131 (15%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+S +FD N L MK+I +GF++ T + IP L R DV+GAA+T SGKT A
Sbjct: 111 VSDKFDDHN---LSAPTMKAIKSMGFEKMTQVQARTIPPLLAGR-DVLGAAKTGSGKTLA 166
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + K+ P+ ++++PTRELALQ+ VA ++
Sbjct: 167 FLIPAIEMLY----------------SLKFKPRNGTGVIVVSPTRELALQIFGVARELME 210
Query: 149 SNSLTLAMAAG 159
+S T + G
Sbjct: 211 HHSQTFGIVIG 221
>gi|384567061|ref|ZP_10014165.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384522915|gb|EIF00111.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 577
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 20/122 (16%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
DA E ++ A++ T A+ +L L P L+K++ LG++E T I +A IP L + DV+G
Sbjct: 10 DAPEGAIDTADLGTAV-AFGDLGLRPELLKALSDLGYEEPTPIQRAAIPPLL-EGADVVG 67
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
A T +GKT AF LP L R+ + ++G E AL++ PTRELA
Sbjct: 68 QAATGTGKTAAFSLPVLHRIAD---------LDRGTEPS---------ALVLVPTRELAA 109
Query: 138 QV 139
QV
Sbjct: 110 QV 111
>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 481
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ EL L+ ++K+I + GF+E+T I IP ALA Q DVIG A+T +GKT AFGLP L
Sbjct: 3 FTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQ--DVIGQAQTGTGKTAAFGLPIL 60
Query: 95 QRL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
Q+L L+++E+A ++A++I PTRELA+Q
Sbjct: 61 QKLDLDKQEQA-------------------IQAIVIEPTRELAIQ 86
>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
Length = 423
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L+ L+ ++ + G+ ++T I + IP L + KD++G A+T +GKT AF LP LQ
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNN-KDLLGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++E EK KG ++ALI+ PTRELA+Q+
Sbjct: 62 NIME----------------EKTVGKGAIKALILAPTRELAIQI 89
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F+++ E+ LHP L+K++ G+ + T I + +P + R D++GAA+T +GKT AF LP
Sbjct: 15 FESFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGR-DIMGAAQTGTGKTAAFTLP 73
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNS 151
L RL+ + +P H +RALI+ PTRELA QV S+
Sbjct: 74 LLHRLMPMANSS-------------MSPARHPVRALILAPTRELADQVAESVKRYSHSSP 120
Query: 152 LTLAMAAGSPLLTSEHSNRRK 172
L +A+ G + ++ RK
Sbjct: 121 LRVAVVFGGVDMNAQRDQLRK 141
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L P ++++I +LGF+E+T I IP LA Q +D+IG A+T +GKT AFG+P +
Sbjct: 4 FAEFNLEPKVLEAITELGFEEATPIQSQSIP-LALQGRDMIGQAQTGTGKTAAFGIPLIS 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +K +RALI+ PTRELA+QV
Sbjct: 63 KISRNDDK--------------------IRALIMAPTRELAIQV 86
>gi|422845066|ref|ZP_16891776.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 478
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ EL L+ ++K+I + GF+E+T I IP ALA Q DVIG A+T +GKT AFGLP L
Sbjct: 3 FTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQ--DVIGQAQTGTGKTAAFGLPIL 60
Query: 95 QRL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
Q+L L+++E+A ++A++I PTRELA+Q
Sbjct: 61 QKLDLDKQEQA-------------------IQAIVIEPTRELAIQ 86
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L Q KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSESLMKAINRMGFEEATPIQAETIP-LGLQNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +P +++A+II PTRELA+QV
Sbjct: 64 KI------------------DPASP--NIQAIIIAPTRELAIQV 87
>gi|398403739|ref|XP_003853336.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
gi|339473218|gb|EGP88312.1| hypothetical protein MYCGRDRAFT_41129 [Zymoseptoria tritici IPO323]
Length = 793
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 14/111 (12%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRA 88
+ + AW L+L P M ++ L F + T+I K IP LA DVIG A T SGKT A
Sbjct: 207 AADVSAWRPLKLCPDTMAALAALKFSKPTAIQKFVIPEVLAGH--DVIGKASTGSGKTLA 264
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
FG+P L+R LE A G+ A K AP ALI++PTRELA+Q+
Sbjct: 265 FGIPILERFLESAVGA------DGKRA-KRAP----LALILSPTRELAVQL 304
>gi|408393250|gb|EKJ72515.1| hypothetical protein FPSE_07152 [Fusarium pseudograminearum CS3096]
Length = 781
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 8 TVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
T + +G D +E V+ A AW L L P ++ +I KL F + T I K IP
Sbjct: 196 TFGALADGNDYKDQEDVDMA-------AWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE 248
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127
+ DVIG A+T SGKT AFG+P ++R LE +E+ K + P +L
Sbjct: 249 IVAGH-DVIGKAQTGSGKTLAFGIPMVERWLEMQEQGVK----------RTGP----MSL 293
Query: 128 IINPTRELALQV 139
+++PTRELA Q+
Sbjct: 294 VLSPTRELAKQL 305
>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
Length = 522
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + + L L P L K + KLG K +T I + IPA+ R D IGAA+T SGKT AF L
Sbjct: 5 EVNPFQSLGLRPWLAKQLTKLGLKGATPIQQNCIPAILSGR-DCIGAAKTGSGKTFAFAL 63
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSLK 148
P L++L EE P H AL++ PT ELA Q+ +VA ++
Sbjct: 64 PILEKLSEE-------------------PVSHF-ALVLTPTHELAYQISEQFLVAGQAMG 103
Query: 149 SNSLTLA-----MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKW 193
++ M L+ H P + G + D+LK+
Sbjct: 104 VRVCVVSGGTDQMIESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKY 153
>gi|417974638|ref|ZP_12615445.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|346328982|gb|EGX97294.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 497
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+K+I + GF+E+T I +A IP L DVIG A+T +GKT AFGLP LQ
Sbjct: 3 FNELGLEEDLLKAIKRSGFEEATPIQEATIP-LVLAGIDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ + E H++A++++PTRELA+Q
Sbjct: 62 HVDVKEE--------------------HIQAIVVSPTRELAIQ 84
>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 552
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 21/99 (21%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
LHP L++++ +LGF + T I +A IP L R D+IG A+T +GKT AFGLP LQR+
Sbjct: 11 LHPDLVQTVTELGFTDPTPIQQAAIPLLLEGR-DLIGQAQTGTGKTAAFGLPLLQRITPR 69
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ ++AL++ PTRELA+QV
Sbjct: 70 QQG--------------------VQALVLAPTRELAIQV 88
>gi|421497715|ref|ZP_15944866.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407183271|gb|EKE57177.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 464
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 18/106 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L RLL + + +RAL++ PTRELA QV
Sbjct: 60 LHRLLANHGRGGRR---------------QVRALVLTPTRELAAQV 90
>gi|445498074|ref|ZP_21464929.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444788069|gb|ELX09617.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 417
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 18/105 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L P L+ ++ ++G++E T+I A IPA+ + +DV+GAA+T SGKT AF LP L
Sbjct: 2 SFSSLGLAPSLINAVTEIGYQEPTAIQSAAIPAIL-RGEDVLGAAQTGSGKTAAFALPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q LL+ R P+ L L++ PTRELA QV
Sbjct: 61 QALLDNRS----------------GPR-QLHGLVLVPTRELAAQV 88
>gi|410516913|sp|Q4IBS2.2|MAK5_GIBZE RecName: Full=ATP-dependent RNA helicase MAK5
Length = 781
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 8 TVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
T + +G D +E V+ A AW L L P ++ +I KL F + T I K IP
Sbjct: 196 TFGALADGNDYKDQEDVDMA-------AWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPE 248
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127
+ DVIG A+T SGKT AFG+P ++R LE +E+ K + P +L
Sbjct: 249 IVAGH-DVIGKAQTGSGKTLAFGIPMVERWLEMQEQGVK----------RTGP----MSL 293
Query: 128 IINPTRELALQV 139
+++PTRELA Q+
Sbjct: 294 VLSPTRELAKQL 305
>gi|119470070|ref|XP_001258007.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL
181]
gi|143345269|sp|A1DMT9.1|MAK5_NEOFI RecName: Full=ATP-dependent RNA helicase mak5
gi|119406159|gb|EAW16110.1| ATP dependent RNA helicase, putative [Neosartorya fischeri NRRL
181]
Length = 777
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E + + AW+ L L P ++ + K+ F TS+ +A IP + + DVIG A T SG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+ LE++ +EK E + ALI++PTRELA Q+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPI-----ALILSPTRELAHQL 300
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L L +L K+ +L +K + I + IP +A Q KD+IG AET SGKT AF LP LQ
Sbjct: 41 WSDLGLVDVLCKACEQLKWKTPSKIQRESIP-VALQGKDIIGLAETGSGKTAAFALPILQ 99
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE P+ H ALI+ PTRELA Q+
Sbjct: 100 ALLEN-------------------PQRHF-ALILTPTRELAFQI 123
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++KSI ++GF+E+T I IP L+ + KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FSELNLSPSMLKSINRMGFEEATPIQAGTIP-LSLEGKDIIGQAQTGTGKTAAFGIPLVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +++ LII PTRELA+QV
Sbjct: 63 KIDTK--------------------NTNVQGLIIAPTRELAIQV 86
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+D + EL + P ++K++ +GF+E + I KA IP +A KD+IG A+T +GKT AFG+P
Sbjct: 2 YDTFKELGIAPEILKAVEDMGFEEPSPIQKAAIP-IALTGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L+R+ + K P+ A++++PTRELA+Q
Sbjct: 61 ILERI----------------DTSKPGPQ----AVVLSPTRELAIQ 86
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L+ ++ + LGF T + A IPA+ KDV+ +A+T +GKT AF LP LQ
Sbjct: 5 FAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVL-AGKDVVASAQTGTGKTAAFMLPTLQ 63
Query: 96 RL-LEEREKAAK------MLEEKGEEAEKYAPKG------HLRALIINPTRELALQVLMV 142
R+ +E+ +KA K E+ AE+ A +G + RALI+ PTRELA Q+ V
Sbjct: 64 RIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNV 123
Query: 143 ASPSLKSNSLTLAMAAG 159
A S + G
Sbjct: 124 AKSVCASTGQQAVIVTG 140
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L Q KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSESLMKAINRMGFEEATPIQAETIP-LGLQNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +P +++A+II PTRELA+QV
Sbjct: 64 KI------------------DPASP--NIQAIIIAPTRELAIQV 87
>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 546
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 32/160 (20%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DDA NEA+ T F +L + +++SI +LG+K+ T+I + +P A Q++D+I
Sbjct: 130 DDA-----NEADERTTF---RDLNICEEILQSIDELGWKKPTAIQRKMLPC-AFQQRDII 180
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
G +ET SGKT F +P LQ L ++R+ AL+I+PTREL
Sbjct: 181 GLSETGSGKTACFIIPILQELRQKRQS--------------------FFALVISPTRELC 220
Query: 137 LQVLMVASPSLKSNSLT--LAMAAGSPLLTSEHSNRRKPN 174
+Q+ +L SN L + G ++T + +KPN
Sbjct: 221 IQIAQ-HFQALGSNLLVNICTIFGGVDIVTQSLNLAKKPN 259
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 25/145 (17%)
Query: 20 QEELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
Q+E + E ++E+D ++ ++ L L+K+I LGFK+ T I KA IP + KD+
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP-VGLLGKDIC 221
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRE 134
A T +GKT AF LP L+RL+ Y P+ R L++ PTRE
Sbjct: 222 ACAATGTGKTAAFILPVLERLI-------------------YKPRQAPITRVLVLVPTRE 262
Query: 135 LALQVLMVASPSLKSNSLTLAMAAG 159
L +QV V + +S+T +A G
Sbjct: 263 LGIQVHSVTKQLAQFSSVTTCLAVG 287
>gi|46121917|ref|XP_385512.1| hypothetical protein FG05336.1 [Gibberella zeae PH-1]
Length = 783
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
+ AW L L P ++ +I KL F + T I K IP + DVIG A+T SGKT AFG
Sbjct: 212 VDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGH-DVIGKAQTGSGKTLAFG 270
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+P ++R LE +E+ K + P +L+++PTRELA Q+
Sbjct: 271 IPMVERWLEMQEQGVK----------RTGP----MSLVLSPTRELAKQL 305
>gi|343495002|ref|ZP_08733210.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
gi|342824125|gb|EGU58692.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
Length = 416
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 16/105 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L L P L+ I +LGFKE+T++ + IP + KDV+ A+T +GKT A+GLP +Q
Sbjct: 3 FENLGLTPALLSRITQLGFKEATTVQEKSIPHILDG-KDVLAGAQTGTGKTAAYGLPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
RL+ K+ K L +K +R+L++ PTRELA QVL
Sbjct: 62 RLI----KSPKPLTDK-----------LVRSLVLVPTRELAQQVL 91
>gi|403170885|ref|XP_003330153.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168932|gb|EFP85734.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1018
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 18/109 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPA 93
++ L LHP L+++I GF T I +A +P LA +DV+G A T SGKT A+ +P
Sbjct: 83 SFQSLGLHPSLLRAILLRGFNSPTPIQRAALPHILASPPRDVVGMARTGSGKTLAYLIPL 142
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+Q L G + ++ +RALI+ PTRELALQVL V
Sbjct: 143 IQTL-------------SGVHSVQFG----IRALILVPTRELALQVLKV 174
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L Q KDVIG A+T +GKT AFG+P ++
Sbjct: 22 FQDFQLSESLMKAINRMGFEEATPIQAETIP-LGLQNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +P +++A+II PTRELA+QV
Sbjct: 81 KI------------------DPASP--NIQAIIIAPTRELAIQV 104
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 22/126 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+++ LG++E T I A IP LA +D+ G+A T SGKT AF LP L+
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIP-LALTGRDICGSAVTGSGKTGAFALPMLE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELALQVLMVASPSLKSNSLT 153
RLL Y P+ +R LI+ PTRELA+QV + + +T
Sbjct: 189 RLL-------------------YRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVT 229
Query: 154 LAMAAG 159
A+ G
Sbjct: 230 SAIVVG 235
>gi|164662887|ref|XP_001732565.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
gi|159106468|gb|EDP45351.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
Length = 542
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L L P K++ +GFK T + + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 38 FTALDLTPATSKALDAMGFKTMTEVQERCIPPLL-AGKDVLGAAQTGSGKTLAFLIPAIE 96
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ A++I+PTRELALQ+ VA + S TL
Sbjct: 97 ML----------------QRLKFKPRNGTGAIVISPTRELALQIFGVAKELMAHQSQTLG 140
Query: 156 MAAG 159
+ G
Sbjct: 141 IIMG 144
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 18/131 (13%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ E + EL L L+K++ KLGF + T I IP LA KD++ +A T SGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIP-LALNGKDILASASTGSGKTAA 243
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F LP L+RLL ++E A +R LI+ PTRELALQ V +
Sbjct: 244 FLLPVLERLL-------------FRDSEYRA----IRVLILLPTRELALQCQSVMENLAQ 286
Query: 149 SNSLTLAMAAG 159
+++T + G
Sbjct: 287 FSNITSCLIVG 297
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 235 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 293
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP L+RL+ + +AA R L++ PTREL +QV V
Sbjct: 294 KTAAFALPVLERLIYKPRQAAVT-----------------RVLVLVPTRELGIQVHSVTK 336
Query: 145 PSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 337 QLAQFCSITTCLAVG 351
>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
gasseri MV-22]
gi|420147753|ref|ZP_14655028.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri CECT 5714]
gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
33323]
gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
gasseri MV-22]
gi|398400900|gb|EJN54431.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri CECT 5714]
Length = 485
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A++I PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIVIEPTRELAIQ 84
>gi|67522587|ref|XP_659354.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|74657524|sp|Q5BCI0.1|MAK5_EMENI RecName: Full=ATP-dependent RNA helicase mak5
gi|40744880|gb|EAA64036.1| hypothetical protein AN1750.2 [Aspergillus nidulans FGSC A4]
gi|259487094|tpe|CBF85492.1| TPA: ATP-dependent RNA helicase mak5 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BCI0] [Aspergillus
nidulans FGSC A4]
Length = 770
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW L L P + S+ KL F TS+ K+ IP + DVIG A T SGKT AFGLP L
Sbjct: 198 AWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGH-DVIGKASTGSGKTLAFGLPIL 256
Query: 95 QRLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ LE ER K EEK EK ALI++PTRELA Q+
Sbjct: 257 EHYLERERRKTIDSEEEK----EKIPI-----ALILSPTRELAHQL 293
>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
Length = 485
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A++I PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIVIEPTRELAIQ 84
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L+L PLL+K++ + G+ + I + IP + R DV+G A+T +GKT AF LP +Q
Sbjct: 3 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGR-DVLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L++ EK KY+ K +R+LI+ PTRELALQ+
Sbjct: 62 NLMKPSEK-------------KYS-KRVIRSLILTPTRELALQI 91
>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
15053]
gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
15053]
Length = 526
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P +MK++ K+GF+E++ I IP L + +D+IG A+T +GKT AFG+P L
Sbjct: 6 FEELELCPEIMKAVKKMGFEEASPIQAKAIP-LVREGRDIIGQAQTGTGKTAAFGIPLL- 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV 139
EK PK L+A+++ PTRELA+QV
Sbjct: 64 --------------------EKIDPKNKKLQAVVLCPTRELAIQV 88
>gi|331214536|ref|XP_003319949.1| hypothetical protein PGTG_00861 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309298939|gb|EFP75530.1| hypothetical protein PGTG_00861 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1329
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ LH ++ + LG++ T I +PA+ R DVIG A+T SGKT AF LP +
Sbjct: 652 WSWFGLHAACLEVVKSLGYQSPTPIQGQAVPAIMSGR-DVIGVAKTGSGKTLAFLLPMFR 710
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ ++R A LE G + A+I+ PTRELA Q+ P LKS L A
Sbjct: 711 HIKDQRPLDA--LE------------GPI-AMIMTPTRELATQIYKEGRPFLKSLGLRAA 755
Query: 156 MA-AGSPL 162
A GSPL
Sbjct: 756 CAYGGSPL 763
>gi|167538304|ref|XP_001750817.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770734|gb|EDQ84416.1| predicted protein [Monosiga brevicollis MX1]
Length = 1041
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW L+L L +++ + GF T I +A I +DVI AA T SGKT AFGLP L
Sbjct: 292 AWTVLQLDRELAEAVVRRGFTAPTPIQQAAIVPAVRDYRDVIAAAPTGSGKTLAFGLPVL 351
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
Q +L R + L+ LI+ PTRELALQ
Sbjct: 352 QHILNRRARGRST--------------AGLQCLILTPTRELALQ 381
>gi|398816782|ref|ZP_10575424.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398031995|gb|EJL25360.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 520
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+ LH +++++ +GF+E+T+I +P +A Q +D+IG A+T +GKT AFG+P ++
Sbjct: 4 FNDFGLHHSIVRALSNMGFEEATAIQDQTVP-VALQGRDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E G+++ +++ PTRELA+QV
Sbjct: 63 RLDET--------------------SGNIQGVVLTPTRELAVQV 86
>gi|150866225|ref|XP_001385748.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|158514828|sp|A3LX02.2|SPB4_PICST RecName: Full=ATP-dependent rRNA helicase SPB4
gi|149387481|gb|ABN67719.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 617
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 8/106 (7%)
Query: 36 WNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W L+ L P + ++I LGF T + A IP L+ KDV+ A T SGKT AF +P
Sbjct: 10 WKNLQYDLQPWIKEAIASLGFPTMTPVQAATIPLLSGN-KDVVVEAVTGSGKTLAFAIPV 68
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQ++ + +E+GE EK +GH+ A++++PTRELA Q+
Sbjct: 69 LQKVSNRLYDS----QEEGEAPEK-VKQGHMLAIVLSPTRELASQI 109
>gi|348590699|ref|YP_004875161.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974603|gb|AEP37138.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 562
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + +L+KS+ ++ F+ T + IP LA + KD+I +A+T SGKT AF LP++Q
Sbjct: 6 FADLGIEQILLKSLERIDFRNPTEVQVKSIP-LALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 96 RLLEERE--------KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL E E AK K ++ PK ++ L++ PTRELA+QV
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKRGKSTANPPKYGVQILVLTPTRELAMQV 116
>gi|449296334|gb|EMC92354.1| hypothetical protein BAUCODRAFT_38404 [Baudoinia compniacensis UAMH
10762]
Length = 745
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+ S E + EL+L MK+I ++ F T I + IP L KDV+GAA+T SGKT
Sbjct: 263 DTSAEPQKFAELKLSDKTMKAISEMPFDTMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTL 321
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
AF +PA++ L + K+ P+ ++++PTRELALQ+ VA +
Sbjct: 322 AFLIPAVEMLY----------------SLKFKPRNGTGVIVVSPTRELALQIFGVARELM 365
Query: 148 KSNSLTLAMAAG 159
+ +S T + G
Sbjct: 366 EHHSQTFGIVIG 377
>gi|320581609|gb|EFW95829.1| Essential nucleolar protein, putative DEAD-box RNA helicase
[Ogataea parapolymorpha DL-1]
Length = 705
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 20/105 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ L L ++ + KLGF++ T I KA IP LA KDVIG A T SGKT A+G+P L+
Sbjct: 160 WSSLNLSASTLQGLQKLGFQKPTEIQKATIP-LAVDGKDVIGKAITGSGKTLAYGIPILE 218
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+ L +++ HL +I PTRELA QV+
Sbjct: 219 KALSNKQE-------------------HLNGIIFTPTRELANQVM 244
>gi|323507773|emb|CBQ67644.1| related to MAK5-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 946
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 63/137 (45%), Gaps = 32/137 (23%)
Query: 32 EFD-----AWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQ-------------- 71
EFD AW+ L LH L +++ GFK+ T I IP AL Q
Sbjct: 235 EFDHKLLPAWSHLPLHAALKRALAHKGFKKPTEIQNRSIPLALGLQQEAASSDDSDDAAA 294
Query: 72 ---------RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG 122
++DV+G ++T SGKT A+GLP L L E E A + P G
Sbjct: 295 ANSSSSSRRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIASFSRPSTTDDVPPPLG 354
Query: 123 HLRALIINPTRELALQV 139
ALI+ PTRELALQV
Sbjct: 355 ---ALILCPTRELALQV 368
>gi|408410488|ref|ZP_11181699.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|408410709|ref|ZP_11181911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|409351244|ref|ZP_11234042.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
gi|407875110|emb|CCK83717.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407875331|emb|CCK83505.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407876877|emb|CCK86100.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
Length = 483
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L+ L+K+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FTELGLNDNLLKAIKRSGFEEATPIQAQTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ L+++ KA ++A++I PTRELA+Q
Sbjct: 62 Q-LDKKNKA-------------------IQAIVIEPTRELAIQ 84
>gi|451993988|gb|EMD86460.1| hypothetical protein COCHEDRAFT_1218663 [Cochliobolus
heterostrophus C5]
Length = 579
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L M +I ++GF++ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 130 FEELNLSERTMSAIKEMGFEKMTEIQQKTIPPLLSGR-DVLGAAKTGSGKTLAFLIPAIE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + R + P+ ++++PTRELALQ+ VA + ++S T
Sbjct: 189 MLSQLR----------------FKPRNGTGVIVVSPTRELALQIFGVARELMSNHSQTFG 232
Query: 156 MAAG 159
+ G
Sbjct: 233 ILIG 236
>gi|448532819|ref|XP_003870508.1| Has1 protein [Candida orthopsilosis Co 90-125]
gi|380354863|emb|CCG24379.1| Has1 protein [Candida orthopsilosis]
Length = 573
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GFK+ T + IP L R DV+GAA+T SGKT AF +PA++ L
Sbjct: 119 MKAIREMGFKKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLY------- 170
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ K P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 171 ---------SLKIKPRNGTAVIIITPTRELALQIFGVARQLMEHHSQTCGIVIG 215
>gi|344228481|gb|EGV60367.1| hypothetical protein CANTEDRAFT_132157 [Candida tenuis ATCC 10573]
Length = 608
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 14/107 (13%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W++L+ LHP L ++ LGF+ T + + IP L+ KDV+ + T SGKT AF +P
Sbjct: 9 SWDKLQGQLHPWLYDAVISLGFQSMTPVQASTIPLLSGS-KDVVVESVTGSGKTLAFTVP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQ++ +K+L ++ + KGH A++++PTRELA Q+
Sbjct: 68 VLQKI-------SKLLYDE----QIILKKGHFFAVVLSPTRELASQI 103
>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 422
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHP LM+++ GF + T I IP LA +++IG A+T +GKT AF LP LQ
Sbjct: 3 FADFALHPALMQNVSAQGFTQPTPIQAQTIP-LALSGQNLIGLAQTGTGKTAAFVLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL+ R++ + ALI+ PTRELA Q+
Sbjct: 62 RLLQNRQRGTQ-------------------ALIVTPTRELAEQI 86
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L Q KDVIG A+T +GKT AFG+P ++
Sbjct: 22 FQDFQLSESLMKAINRMGFEEATPIQAETIP-LGLQNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +P +++A+II PTRELA+QV
Sbjct: 81 KI------------------DPASP--NIQAIIIAPTRELAIQV 104
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 18/104 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL LHPL+++++ G++ T I IPAL R DVIG A+T +GKT AF LPAL
Sbjct: 15 FSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGR-DVIGLAQTGTGKTAAFALPALS 73
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L E A + A G AL++ PTRELA+QV
Sbjct: 74 DLAE----AGR------------ANDGPF-ALVLTPTRELAIQV 100
>gi|395243277|ref|ZP_10420264.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
gi|394484507|emb|CCI81272.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
Length = 489
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K+I + GF+E+T I IP LA + DVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLKPEILKAIKRAGFEEATPIQAQTIP-LALKGDDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L ++ + ++A++I PTRELA+Q
Sbjct: 62 NLDKQHDS--------------------IQAIVIEPTRELAIQ 84
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL + +MKS+ K+GF+E+T I IP LA DVIG A+T +GKT AFG+P
Sbjct: 4 FNELNISSPIMKSLEKMGFEEATPIQSETIP-LALAGHDVIGQAQTGTGKTAAFGIP--- 59
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
MLE+ A K ++ L++ PTRELA+QV
Sbjct: 60 -----------MLEKVDTSARK------VQGLVVAPTRELAIQV 86
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+ S+ + GF+E+T I +A IP LA Q +DVIG A+T +GKT AFGLP L
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIP-LALQGRDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQ 138
EK P H L+ L+I PTRELA+Q
Sbjct: 61 --------------------EKIDPANHQLQGLVIAPTRELAIQ 84
>gi|421227769|ref|ZP_15684471.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
gi|395594053|gb|EJG54293.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
Length = 112
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|365985399|ref|XP_003669532.1| hypothetical protein NDAI_0C06300 [Naumovozyma dairenensis CBS 421]
gi|343768300|emb|CCD24289.1| hypothetical protein NDAI_0C06300 [Naumovozyma dairenensis CBS 421]
Length = 614
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 15/115 (13%)
Query: 36 WNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W++L+ + P + +I +GF + T + + IP + Q KDV+ + T SGKT AF +P
Sbjct: 8 WDDLKCPIQPWIRTAIDVMGFDQMTPVQASTIPMFS-QNKDVVVESVTGSGKTVAFVIPV 66
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
L+R++ E G + + KGH +LII+PTRELA Q +V LK
Sbjct: 67 LERIISE-----------GANKKSFK-KGHFHSLIISPTRELAKQTKIVIDEFLK 109
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
++ + EL L +MK++ +GF+E + I K IP +A Q KD+IG A+T +GKT AFG+P
Sbjct: 2 YETFKELGLSEEIMKAVADMGFEEPSPIQKEAIP-IAMQGKDLIGQAQTGTGKTAAFGIP 60
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LQR+ + K P+ A++++PTRELA+Q
Sbjct: 61 ILQRI----------------DTSKPGPQ----AIVLSPTRELAIQ 86
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 67/129 (51%), Gaps = 26/129 (20%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DD QE E I T +++ L LHP L+ SI L + T I A IP A + +DVI
Sbjct: 26 DDNQE---TEDGIITS-KSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPP-ALEGRDVI 80
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
G AET SGKT +F +P L LLE+ P+ + A+I+ PTRELA
Sbjct: 81 GLAETGSGKTGSFAIPILNYLLEK-------------------PQKQVFAVILAPTRELA 121
Query: 137 LQV--LMVA 143
Q+ +MVA
Sbjct: 122 FQIHEVMVA 130
>gi|390352859|ref|XP_784112.3| PREDICTED: ATP-dependent RNA helicase DDX24-like
[Strongylocentrotus purpuratus]
Length = 934
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+G D A E++ +E +ST W+ L + ++ +S+ +GF T I IPA ++ K
Sbjct: 232 SGEDTAGEKISSEVSMST----WDTLSIPTVVHESLQTMGFASPTPIQAGCIPAAINEGK 287
Query: 74 DVIGAAETESGKTRAFGLPALQRLLE 99
D++GAAET SGKT AFG+P + R+L+
Sbjct: 288 DIVGAAETGSGKTLAFGIPLIYRILQ 313
>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 443
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 23/107 (21%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F +N HPL+ ++ + G+ T I IP + KDV+G A+T +GKT AF LP
Sbjct: 3 FQLFN---FHPLISAAVKEAGYVTPTPIQTQAIPPVM-DGKDVMGLAQTGTGKTAAFVLP 58
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQRL+E P+G +RALII PTRELA Q+
Sbjct: 59 ILQRLME-------------------GPRGRVRALIIAPTRELAEQI 86
>gi|121708606|ref|XP_001272186.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|143019610|sp|A1CIQ5.1|HAS1_ASPCL RecName: Full=ATP-dependent RNA helicase has1
gi|119400334|gb|EAW10760.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 625
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I ++GF+ T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 145 FTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGR-DVLGAAKTGSGKTLSFLIPAVE 203
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ L+++PTRELALQ+ VA + +S T
Sbjct: 204 ML----------------SALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYG 247
Query: 156 MAAG 159
+ G
Sbjct: 248 IVIG 251
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L++SI K+GF+E+T I IP LA KDVIG A+T +GKT +FGLP LQ
Sbjct: 3 FNELGLDSALLESIEKMGFEEATPIQSQTIP-LALAGKDVIGQAQTGTGKTASFGLPMLQ 61
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ L R+ ++ L+I PTRELA+Q
Sbjct: 62 KINLRNRK---------------------VQGLVIAPTRELAIQ 84
>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 409
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L LH L+ ++ +LG+++ T I IPA+ ++DV+ A+T +GKT AF LP L
Sbjct: 2 SFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILA-KQDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q+LL + E + APK +RAL++ PTRELA+QV K + +
Sbjct: 61 QQLLIDNE-------------SQDAPK-DVRALVLVPTRELAVQVQQSFVKYAKGTDIRV 106
Query: 155 AMAAG 159
+A G
Sbjct: 107 GIAYG 111
>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 419
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 17/141 (12%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ST+F++ L L P ++ ++ LGF++ T + IP + + KDV+ A+T +GKT A
Sbjct: 1 MSTQFES---LGLCPTILSTLSSLGFEQPTEVQTQAIPHVL-EGKDVLAGAQTGTGKTAA 56
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
FGLP +Q+L+E EA++ +RAL++ PTRELA QV +
Sbjct: 57 FGLPIIQKLIE-------------SEAKRDPQSNDVRALVLVPTRELAQQVFDNLVQYAQ 103
Query: 149 SNSLTLAMAAGSPLLTSEHSN 169
+ L + A G + + N
Sbjct: 104 ATELKIVAAYGGTSMNVQTRN 124
>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1012
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 12/104 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L +M++I +LG+++ + I + IP + +R+D+IG AET SGKT AFG+P +
Sbjct: 578 WEEGHLPSSVMEAIRELGYEKPSPIQRQAIP-IGMERRDIIGIAETGSGKTAAFGIPMI- 635
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
A +L + ++ A +G L ALI+ PTRELA+Q+
Sbjct: 636 ---------AYILSLEAGMRDRVADQGPL-ALIMAPTRELAIQI 669
>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
4126]
gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
4126]
Length = 590
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P ++K+I ++GF E T+I + IP L + ++D+I A+T SGKT AFGLP +
Sbjct: 4 FEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLIALAQTGSGKTAAFGLPVIN 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +K ++L++ PTRELA+Q+
Sbjct: 64 QIDSDSKKT--------------------QSLVLCPTRELAIQI 87
>gi|449546419|gb|EMD37388.1| hypothetical protein CERSUDRAFT_135966 [Ceriporiopsis subvermispora
B]
Length = 945
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ GF+ T I + IPAL A+ +D++G A T SGK+ A+ +P
Sbjct: 88 SFQSMGLHPWLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKSLAYMIPL 147
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
+QRL G + + RALI+ PTRELALQVL V
Sbjct: 148 IQRL-------------GGRHSSTFGA----RALILLPTRELALQVLKVG 180
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 18/118 (15%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
+ + A+ T FD++ LH ++++I + G++ +T I IP + Q +DV+GAA+T
Sbjct: 1 MTDTAQADTTFDSFG---LHADILRAITEQGYRVATPIQAQAIPVV-MQGRDVMGAAQTG 56
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
+GKT F LP +QRLL + +P H +RAL++ PTRELA QV
Sbjct: 57 TGKTAGFSLPIIQRLLPFASTST-------------SPARHPVRALMLTPTRELADQV 101
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++ ++G+ E+T I + IP L Q KD+ A+T +GKT AF LP +Q
Sbjct: 3 FDELGLAPEILKAVTEMGYAEATPIQQQAIP-LVLQGKDLKACAQTGTGKTAAFTLPLIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL + A K +RAL++ PTRELALQV
Sbjct: 62 RLLHL------------DTASPSPAKHPVRALMLAPTRELALQV 93
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L L+K++ + GF+E+T I +A IP L KDVIG A+T +GKT AFGLP L
Sbjct: 3 FDELGLSEDLLKAVKRSGFEEATPIQEATIP-LVLAGKDVIGQAQTGTGKTAAFGLPIL- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQ 138
E PK H ++A+II+PTRELA+Q
Sbjct: 61 --------------------EHVDPKEHAIQAIIISPTRELAIQ 84
>gi|50551521|ref|XP_503234.1| YALI0D24497p [Yarrowia lipolytica]
gi|74689555|sp|Q6C7X8.1|DBP10_YARLI RecName: Full=ATP-dependent RNA helicase DBP10
gi|49649102|emb|CAG81435.1| YALI0D24497p [Yarrowia lipolytica CLIB122]
Length = 926
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 19/121 (15%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
L L L++K+I + GFK+ T I + IP L + KDV+G A T SGKT AF LP L++L
Sbjct: 107 LGLSQLVLKNIARKGFKQPTPIQRKTIP-LVLEGKDVVGMARTGSGKTAAFVLPMLEKL- 164
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAA 158
+ ++ K RA+I++P+RELALQ L V L LAM
Sbjct: 165 -----------------KVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLV 207
Query: 159 G 159
G
Sbjct: 208 G 208
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 18/108 (16%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
FD + LHP +++++ + G+ T I A IP + R DV+GAA+T +GKT F LP
Sbjct: 3 FDTFG---LHPDILRALAESGYTRPTPIQAAAIPVVVAGR-DVMGAAQTGTGKTAGFSLP 58
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
+Q LL E +A +P H +RALI+ PTRELA QV
Sbjct: 59 IIQNLLPEANTSA-------------SPARHPVRALILTPTRELADQV 93
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 18/131 (13%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+ E + EL L L+K++ KLGF + T I IP LA KD++ +A T SGKT A
Sbjct: 177 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKTIP-LALNGKDILASASTGSGKTAA 235
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F LP L+RLL ++E A +R L++ PTRELALQ V +
Sbjct: 236 FLLPILERLL-------------FRDSEYRA----IRVLVLLPTRELALQCQSVLENLAQ 278
Query: 149 SNSLTLAMAAG 159
+++T + G
Sbjct: 279 FSNITSCLIVG 289
>gi|67522985|ref|XP_659553.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
gi|74657502|sp|Q5BBY1.1|HAS1_EMENI RecName: Full=ATP-dependent RNA helicase has1
gi|40745958|gb|EAA65114.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
gi|259487308|tpe|CBF85879.1| TPA: ATP-dependent RNA helicase has1 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BBY1] [Aspergillus
nidulans FGSC A4]
Length = 609
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L ++ I ++GF+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA L ++S T
Sbjct: 189 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYG 232
Query: 156 MAAG 159
+ G
Sbjct: 233 IVIG 236
>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
profundum SS9]
Length = 422
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L+ L+ ++ +LGFK T I + IP + D++ A+T +GKT AFGLP +
Sbjct: 2 SFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAG-DDIMAGAQTGTGKTAAFGLPMI 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLT 153
QRLL ++ E E Y K +RAL++ PTRELA QV K+ S+
Sbjct: 61 QRLLA---------SQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIK 111
Query: 154 LAMAAG 159
+A+A G
Sbjct: 112 VAVAYG 117
>gi|255932267|ref|XP_002557690.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582309|emb|CAP80487.1| Pc12g08600 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 719
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 10/106 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW+ L L P ++ K+ F ++I KA IPA+ DV+G A T SGKT AFG+P +
Sbjct: 141 AWDGLNLSPETFTALSKMKFSSPSAIQKASIPAILDGH-DVVGKASTGSGKTLAFGIPII 199
Query: 95 QRLLEEREKAAKMLEEKGEEAEKY-APKGHLRALIINPTRELALQV 139
+ L++R K E + +++EK +P ALI++PTRELA Q+
Sbjct: 200 EHYLDQRGKQ----EGQSDKSEKNKSPI----ALILSPTRELAHQL 237
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
FD + LHP +++++ + G+ +T I A IP + R DV+GAA+T +GKT F LP
Sbjct: 17 FDTFG---LHPDILRALAESGYTRATPIQAAAIPVVIAGR-DVMGAAQTGTGKTAGFSLP 72
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNS 151
+Q LL + +A +P H +RALI+ PTRELA QV + K +
Sbjct: 73 IIQNLLPDANTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAKHTA 119
Query: 152 LTLAMAAG 159
L A+ G
Sbjct: 120 LRSAVVFG 127
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+KSI +LGF+E+T I A IP + KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FVELGLSPALLKSIDQLGFEEATPIQAATIPK-SLDGKDLIGQAQTGTGKTAAFGIPLME 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + H++ +II PTRELA+QV
Sbjct: 63 KIDTKNH--------------------HIQGMIIAPTRELAIQV 86
>gi|346318279|gb|EGX87883.1| ATP-dependent RNA helicase DDX18 [Cordyceps militaris CM01]
Length = 597
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 41/168 (24%)
Query: 17 DDAQEELVNEAE--------ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKA----- 63
DD QE V + ++T +++ EL+L M++I ++GF + TSI K+
Sbjct: 78 DDDQETTVADLPTDNAPVLPLATNLESFEELKLSDKTMQAIKEMGFTKMTSIQKSVRPPD 137
Query: 64 ----RIPALAHQR--------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111
+P L ++ KDV+GAA+T SGKT AF +PA++ L
Sbjct: 138 RPEQYMPMLTTKQAIPPLMAGKDVLGAAKTGSGKTLAFLIPAIEIL-------------- 183
Query: 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ ++ P+ +I++PTRELALQ+ VA +K +S T + G
Sbjct: 184 --SSLRFKPRNGTGVIIVSPTRELALQIFGVARELMKHHSQTYGIVMG 229
>gi|444379626|ref|ZP_21178803.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443676355|gb|ELT83059.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 410
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 19/99 (19%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
LHP L +++ +LG+ E T I + IP + + KDV+GAA+T +GKT AF LP + +LLE
Sbjct: 9 LHPTLQQTLSELGYSEPTDIQQQAIPKVL-EGKDVMGAAQTGTGKTAAFTLPLIHQLLER 67
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KG R LI+ PTRELA QV
Sbjct: 68 ------------------GVKGSARVLIVTPTRELAQQV 88
>gi|358058122|dbj|GAA96101.1| hypothetical protein E5Q_02762 [Mixia osmundae IAM 14324]
Length = 928
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 18/109 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++ + + P L+K+I GF T I +A +P+ LA +D++G A T SGKT A+ +P
Sbjct: 103 SFQSMGIQPNLLKTILMRGFHTPTPIQRAALPSILATPPRDLVGMARTGSGKTLAYMIPL 162
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+QRL G+ ++K+ RAL++ PTRELALQVL V
Sbjct: 163 IQRL-------------GGQHSQKFG----ARALVMVPTRELALQVLKV 194
>gi|407919561|gb|EKG12791.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 735
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AWN L L M +I KL F T I +A IP + DV+G A T SGKT AFG+P L
Sbjct: 198 AWNSLNLSNETMVAISKLKFGAPTRIQRAAIPEILSGH-DVVGKAATGSGKTLAFGIPIL 256
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ LE + K +KGE+A ALI++PTRELA Q+
Sbjct: 257 ESFLE--SQGNKKAPKKGEKAPT--------ALILSPTRELAHQI 291
>gi|291001145|ref|XP_002683139.1| predicted protein [Naegleria gruberi]
gi|284096768|gb|EFC50395.1| predicted protein [Naegleria gruberi]
Length = 460
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 49 IYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL--LEEREKAAK 106
+Y+LGF + T I + IP Q+ D++ AAET SGKT AF LP + L L+E E A +
Sbjct: 1 LYRLGFYKPTPIQEESIPKAIGQQADILAAAETGSGKTLAFVLPIIDELMKLKENEPAQQ 60
Query: 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ ++ E LR+LI+ PTRELALQV +++ SL + G
Sbjct: 61 V-----KDDESRTDMFQLRSLILLPTRELALQVCSHIEAVIRNTSLKVVGLVG 108
>gi|399116968|emb|CCG19780.1| ATP-dependent rna helicase [Taylorella asinigenitalis 14/45]
Length = 562
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 11/113 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + +L+KS+ ++ F+ T + IP LA + KD+I +A+T SGKT AF LP++Q
Sbjct: 6 FADLGIEQILLKSLERIDFRNPTEVQVKSIP-LALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 96 RLLEERE---------KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL E E KA +KG+ PK ++ L++ PTRELA+QV
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKKGKPTAN-PPKYGVQILVLTPTRELAMQV 116
>gi|410659385|ref|YP_006911756.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|410662371|ref|YP_006914742.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
gi|409021740|gb|AFV03771.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|409024727|gb|AFV06757.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
Length = 471
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E+ L +L ++I ++GF+E+T I + IP L + KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FFEIGLSSVLTQAISEMGFEETTPIQERTIP-LVLEGKDIIGQAQTGTGKTAAFGIPMIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+ +RE ++AL++ PTRELA+QV
Sbjct: 63 RMKPDRES--------------------IKALVVTPTRELAIQV 86
>gi|302406797|ref|XP_003001234.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
gi|261359741|gb|EEY22169.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
Length = 902
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I K GF + T I + IP L RKDV+G A T SGKT AF +P ++
Sbjct: 89 FQVMGLNSNLLRAITKKGFVQPTPIQRKTIP-LIMDRKDVVGMARTGSGKTAAFVIPMIE 147
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RL + ++ K RALI++P+RELA+Q L V K L A
Sbjct: 148 RL------------------KTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAA 189
Query: 156 MAAGSPLLTSEHS 168
+ G + + S
Sbjct: 190 LVVGGDSMDEQFS 202
>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 501
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 35/161 (21%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
VGN DD+ I+ F +L+L +K+I K+GF T + IP L
Sbjct: 26 VGNDKDDS--------SIAKNF---KDLKLSDPTLKAIEKMGFTSMTPVQARTIPPLLAG 74
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
R DV+GAA+T SGKT AF +PA++ L + K+ P+ ++I P
Sbjct: 75 R-DVLGAAKTGSGKTLAFLIPAIEML----------------HSLKFKPRNGTGVIVITP 117
Query: 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
TRELALQ+ V ++ +S T + G +NRR+
Sbjct: 118 TRELALQIFGVVRELMEFHSQTFGIVIGG-------ANRRQ 151
>gi|334705092|ref|ZP_08520958.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 462
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 18/106 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L RLL + + +RAL++ PTRELA QV
Sbjct: 60 LHRLLANHGRGGRR---------------QVRALVLTPTRELAAQV 90
>gi|336311025|ref|ZP_08565993.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865440|gb|EGM70463.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 409
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++N L LH L+ ++ +LG+++ T I IP + ++D++ A+T +GKT AF LP L
Sbjct: 2 SFNSLSLHSQLVNTLAELGYQQPTPIQVEAIPVIL-AKQDLMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
L+ AA + EE AP+ H+RAL++ PTRELA+QV K + +
Sbjct: 61 HGLM-----AAPLTEE--------APR-HIRALVLVPTRELAVQVQQSFVNYAKGTDIRI 106
Query: 155 AMAAG 159
+A G
Sbjct: 107 GIAYG 111
>gi|451856883|gb|EMD70174.1| MAPK protein MPS1 [Cochliobolus sativus ND90Pr]
Length = 1051
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L M +I ++GF++ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 574 FEELNLSERTMSAIKEMGFEKMTEIQQKTIPPLLSGR-DVLGAAKTGSGKTLAFLIPAIE 632
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + R + P+ ++++PTRELALQ+ VA + ++S T
Sbjct: 633 MLSQLR----------------FKPRNGTGVIVVSPTRELALQIFGVARELMSNHSQTFG 676
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G ++E RK
Sbjct: 677 ILIGGANRSAEAEKLRK 693
>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
Length = 1206
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ L L + I+KLG+ + TSI IPA+ R DVIG A+T SGKT AF LP +
Sbjct: 572 WSQCGLGVLTLDVIHKLGYDQPTSIQAQAIPAIMSGR-DVIGVAKTGSGKTIAFLLPMFR 630
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ ++R E E P G L++ PTRELA Q+ P LK+ +L
Sbjct: 631 HIKDQRPL---------ENME--GPVG----LVMTPTRELATQIHKECKPFLKALNLRAV 675
Query: 156 MAAG 159
A G
Sbjct: 676 CAYG 679
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 177 EDASQYDENLSFQDMNLSRPLLKAITTMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 235
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R LI+ PTREL +QV V
Sbjct: 236 KTAAFALPVLERLI-------------------YKPRQAPVTRVLILVPTRELGIQVHSV 276
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 277 TKQLAQFCSITTCLAVG 293
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 22/140 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E L ++KS+ ++GF+E+T I + IP + KD+IG A+T +GKT AFGLP +Q
Sbjct: 4 FSEFGLDEKIVKSVERMGFEEATPIQEKTIP-IGLAGKDLIGQAQTGTGKTAAFGLPMIQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-MVASPSLKSNSLTL 154
++ ++ G ++ALII PTRELA+QV + S + L
Sbjct: 63 KIDQK--------------------NGDVQALIIAPTRELAIQVSEELYKLSYDKHVRVL 102
Query: 155 AMAAGSPLLTSEHSNRRKPN 174
A+ GS + S ++KP
Sbjct: 103 AVYGGSDISRQIRSLKKKPQ 122
>gi|346970819|gb|EGY14271.1| ATP-dependent RNA helicase MAK5 [Verticillium dahliae VdLs.17]
Length = 700
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
EE ++AE + W L L P + +I +L F + T+I IP + DVIG A
Sbjct: 125 EEAEDDAE-DLDMSEWMGLNLSPATIATIRRLKFTKPTTIQSTAIPHI-QAGHDVIGKAS 182
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
T SGKT AFG+P + + LE+ + + E + E AP ALII+PTRELA Q++
Sbjct: 183 TGSGKTLAFGIPIVDKWLEKNGEEQESAMETDDAPEAKAP----LALIISPTRELAHQIM 238
>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
Length = 1561
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 25/145 (17%)
Query: 20 QEELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
Q+E + E ++++D ++ ++ L L+K+I LGFK+ T I KA IP + KD+
Sbjct: 966 QKEAESFFEDASQYDDSLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP-VGLLGKDIC 1024
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRE 134
A T +GKT AF LP L+RL+ Y P+ R L++ PTRE
Sbjct: 1025 ACAATGTGKTAAFILPVLERLI-------------------YKPRQAPITRVLVLVPTRE 1065
Query: 135 LALQVLMVASPSLKSNSLTLAMAAG 159
L +QV V + +S+T +A G
Sbjct: 1066 LGIQVHSVTKQLAQFSSVTSCLAVG 1090
>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
SJ-7A-US]
gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
jensenii 1153]
gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
jensenii 1153]
gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
SJ-7A-US]
Length = 484
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L+ L+K+I + GF+E+T I + IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FTELGLNDALLKAIKRSGFEEATPIQEKTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + E + ++AL+I PTRELA+Q
Sbjct: 62 KI---------------DNKEHF-----IQALVIEPTRELAIQ 84
>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
Length = 698
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W+E L+P ++K+I KLGF+ T I +A IP + +D+IG AET SGKT AF LP L
Sbjct: 274 SWDEAGLNPEMLKAIQKLGFENPTPIQRAAIP-IGLNNRDIIGVAETGSGKTLAFVLPLL 332
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +++ E+ + Y A+I+ PTR+LA Q+
Sbjct: 333 NWII----SLPQLVREQDIDNGPY-------AVILAPTRDLAQQI 366
>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
Length = 422
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L+ L+ ++ +LGFK T I + IP + D++ A+T +GKT AFGLP +
Sbjct: 2 SFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAG-DDIMAGAQTGTGKTAAFGLPMI 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLT 153
QRLL ++ E E Y K +RAL++ PTRELA QV K+ S+
Sbjct: 61 QRLLA---------SQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIK 111
Query: 154 LAMAAG 159
+A+A G
Sbjct: 112 VAVAYG 117
>gi|320582556|gb|EFW96773.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 568
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L MK I +GF + T + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 114 FADLHLSEPTMKGIQDMGFTKMTEVQARTIPPLL-AGKDVLGAAKTGSGKTLAFLIPAIE 172
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ A++I PTRELALQ+ VA + +S TL
Sbjct: 173 LLY----------------SLKFKPRNGAGAIVITPTRELALQIFGVARELMAHHSQTLG 216
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G +NRR+
Sbjct: 217 ILIGG-------ANRRQ 226
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 21/106 (19%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
++ + EL L +MK++ +GF+E + I K +P +A Q KD+IG A+T +GKT AFG+P
Sbjct: 8 YETFKELGLSEEIMKAVADMGFEEPSPIQKEAVP-IAMQGKDLIGQAQTGTGKTAAFGIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
LQR+ + K P+ A++++PTRELA+Q
Sbjct: 67 ILQRI----------------DTSKPGPQ----AIVLSPTRELAIQ 92
>gi|171677075|ref|XP_001903489.1| hypothetical protein [Podospora anserina S mat+]
gi|170936605|emb|CAP61264.1| unnamed protein product [Podospora anserina S mat+]
Length = 580
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L MK+I ++GF + T I + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 98 FAQLNLSERTMKAIEEMGFTKMTEIQRRGIPPLL-AGKDVLGAAKTGSGKTLAFLIPAIE 156
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + ++ P+ +++ PTRELALQ+ VA +K +S T
Sbjct: 157 ML----------------HSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKHHSQTYG 200
Query: 156 MAAG 159
+ G
Sbjct: 201 VCIG 204
>gi|425781024|gb|EKV19006.1| DEAD/DEAH box RNA helicase, putative [Penicillium digitatum PHI26]
gi|425783287|gb|EKV21144.1| DEAD/DEAH box RNA helicase, putative [Penicillium digitatum Pd1]
Length = 680
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
NE + TE W LHP++++++ G+++ T++ IPA+ DVI A+T SG
Sbjct: 137 NEIKAVTE---WANFGLHPVMLENVRLCGYEQPTAVQSYAIPAVL-ANLDVIAVAQTGSG 192
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK-GHLRA----LIINPTRELALQV 139
KT AF +P L +L+ KA K+ + E++ P+ +RA LI+ PTRELA Q+
Sbjct: 193 KTGAFLIPILSKLM---GKARKLAAPRPNTTERFNPREDAVRAEPLVLIVCPTRELATQI 249
Query: 140 L 140
Sbjct: 250 F 250
>gi|392945367|ref|ZP_10311009.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392288661|gb|EIV94685.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 575
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 23/125 (18%)
Query: 15 GPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
GPD A++ V++A T F EL L P L++S+ LG++E T I + +P L R D
Sbjct: 12 GPDPAKD--VDDAGDVTGF---AELALRPGLLRSLAALGYEEPTPIQREAVPPLLTGR-D 65
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
++G A T +GKT AF LP L RL + R+ + P+ AL++ PTRE
Sbjct: 66 LLGQAATGTGKTAAFALPLLNRLADARDG-------------DHGPQ----ALVLVPTRE 108
Query: 135 LALQV 139
LA+QV
Sbjct: 109 LAIQV 113
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ TSI KA IP + KD+ A T +G
Sbjct: 177 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTSIQKACIP-VGLLGKDICACAATGTG 235
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 236 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 276
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 277 TRQLAQFCNITTCLAVG 293
>gi|194881539|ref|XP_001974888.1| GG20872 [Drosophila erecta]
gi|190658075|gb|EDV55288.1| GG20872 [Drosophila erecta]
Length = 815
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 40/163 (24%)
Query: 17 DDAQEELVNEAEIST----EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
D + EE IST + AWN L + +++++ + GFK T I +PA H +
Sbjct: 196 DSSDEEAPELVPISTGEGEDVSAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGK 255
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEERE--------KAAKMLEEKGE----------- 113
KD++GAAET SGKT AFG+P L ++E ++ KA K+ ++ E
Sbjct: 256 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 315
Query: 114 ---------------EAEKYAPKGH--LRALIINPTRELALQV 139
+AE++A + L L++ PTRELA+QV
Sbjct: 316 PEELDHVSGASDEESDAEEHAQRMQTPLYGLVLTPTRELAVQV 358
>gi|381179470|ref|ZP_09888322.1| DEAD/DEAH box helicase domain protein [Treponema saccharophilum DSM
2985]
gi|380768644|gb|EIC02631.1| DEAD/DEAH box helicase domain protein [Treponema saccharophilum DSM
2985]
Length = 691
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 17 DDAQEEL-VNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
DDA+E + V+E + E D ++ +L L ++ +I K GFK + I IP L +
Sbjct: 37 DDAREIVEVDETDGEAEDDGEMSFADLGLDEFILSAIEKKGFKTPSPIQVLAIPRLLNGD 96
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
++I A T +GKT AFGLP +QR+ EE + H+RAL++ PT
Sbjct: 97 ANIIAKARTGTGKTAAFGLPIVQRIHEESD--------------------HVRALVLEPT 136
Query: 133 RELALQVLM-VASPSLKSNSLTLAMAAGSPLLTSEHSNRR 171
RELA+Q + S S + G+P S RR
Sbjct: 137 RELAMQTCTELQSFSTTKYPRVAVLYGGAPYGEQIRSLRR 176
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 16/104 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L+ L+K++ + G++ T I IP L R DV+G A+T +GKT AF LP LQ
Sbjct: 4 FTDLGLNESLLKALAEDGYETPTPIQAKAIPLLLDGR-DVLGIAQTGTGKTAAFALPMLQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL++ +A PKG RALI+ PTRELA+Q+
Sbjct: 63 RLMDSNRRA--------------GPKG-CRALILTPTRELAVQI 91
>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CMR15]
Length = 481
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
FD + LHP +++++ + G+ +T I A IP + R DV+GAA+T +GKT F LP
Sbjct: 3 FDTFG---LHPDILRALAESGYTRATPIQAAAIPVVIAGR-DVMGAAQTGTGKTAGFSLP 58
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNS 151
+Q LL + +A +P H +RALI+ PTRELA QV + K +
Sbjct: 59 IIQNLLPDASTSA-------------SPARHPVRALILTPTRELADQVYDNVAKYAKHTA 105
Query: 152 LTLAMAAG 159
L A+ G
Sbjct: 106 LRSAVVFG 113
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 21/143 (14%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+A E NE S FD++ LHP +++++ + G+ + T I A IP + R DV+G
Sbjct: 3 EASEAPANE---SVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVTAGR-DVMG 55
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELA 136
AA+T +GKT F LP + LL + +A +P H +RALI+ PTRELA
Sbjct: 56 AAQTGTGKTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELA 102
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
QV + K +L A+ G
Sbjct: 103 DQVYDNVAKYAKYTALRSAVVFG 125
>gi|50420521|ref|XP_458797.1| DEHA2D07744p [Debaryomyces hansenii CBS767]
gi|74659356|sp|Q6BSM3.1|SPB4_DEBHA RecName: Full=ATP-dependent rRNA helicase SPB4
gi|49654464|emb|CAG86941.1| DEHA2D07744p [Debaryomyces hansenii CBS767]
Length = 614
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
W+ L+ LHP + ++I LG+ T + + IP L KDV+ A T SGKT AF +P
Sbjct: 9 TWSVLKCDLHPWIKEAIKSLGYPTMTPVQASTIP-LFSGNKDVVVEAVTGSGKTLAFVIP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
LQ+L ++E+GE E KGH+ ++I++PTRELA Q+ V L
Sbjct: 68 VLQKL----SNRLYNIDEEGENPEP-VKKGHMLSIILSPTRELAKQIQTVFDKVL 117
>gi|145244675|ref|XP_001394643.1| ATP-dependent RNA helicase mak5 [Aspergillus niger CBS 513.88]
gi|143345221|sp|A2QWW0.1|MAK5_ASPNC RecName: Full=ATP-dependent RNA helicase mak5
gi|134079333|emb|CAK96962.1| unnamed protein product [Aspergillus niger]
gi|350631401|gb|EHA19772.1| hypothetical protein ASPNIDRAFT_178721 [Aspergillus niger ATCC
1015]
Length = 766
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW L L P ++ S+ K+ F T + K+ IP + DVIG A T SGKT AFG+P L
Sbjct: 193 AWESLGLSPEILTSLSKMKFTTPTLVQKSCIPQILDGH-DVIGKASTGSGKTLAFGIPIL 251
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ LE+R + + +E E+ + AP ALI++PTRELA Q+
Sbjct: 252 EHYLEKRRQDLRAGKE--EKKKDTAPI----ALIMSPTRELAHQL 290
>gi|344231947|gb|EGV63826.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 552
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 24/127 (18%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
+K+I +GFK T + IP L R DV+GAA+T SGKT AF LPA++ L
Sbjct: 100 LKAIEDMGFKTMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLLPAIEMLY------- 151
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165
+ K+ P+ ++I+PTRELALQ+ VA L ++ T + G
Sbjct: 152 ---------SLKFKPRNGTGVVVISPTRELALQIFGVARELLAHHTQTFGIVIGG----- 197
Query: 166 EHSNRRK 172
+NRR+
Sbjct: 198 --ANRRQ 202
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 24/124 (19%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
PD+++E EA + W +L L+ L K+ +L +K + I K IP +A Q KD+
Sbjct: 44 PDESEE---TEAPKCEQLQTWKDLGLNETLCKACEELKWKAPSKIQKEAIP-VALQGKDI 99
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
IG AET SGKT AF LP L LLE P+ + AL++ PTREL
Sbjct: 100 IGLAETGSGKTGAFALPILHALLEN-------------------PQRYF-ALVLTPTREL 139
Query: 136 ALQV 139
A Q+
Sbjct: 140 AFQI 143
>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357421|ref|ZP_12960119.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689382|gb|EHI53922.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 463
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 18/106 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPA 93
++NEL L P +++++ +LG+++ T I + IPA LA Q DV+G A+T +GKT F LP
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQ--DVLGGAQTGTGKTAGFTLPM 59
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L RL+ + + +RAL++ PTRELA QV
Sbjct: 60 LHRLMANHGRGGRR---------------QVRALVLTPTRELAAQV 90
>gi|443896134|dbj|GAC73478.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 886
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIP-------------------ALAHQRKDV 75
AW+ L LH L +++ GF T I IP + A +++DV
Sbjct: 228 AWSHLPLHAALKRALAHKGFHSPTEIQNRSIPLALGLQQDDSSDSDEPSTSSSAFKKRDV 287
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
+G ++T SGKT A+GLP L L E A + P G ALI+ PTREL
Sbjct: 288 VGVSQTGSGKTLAYGLPILNYLFHNAENVA----SAPTHGDVPPPLG---ALILCPTREL 340
Query: 136 ALQVL-----MVASPSLKSNSLTLAMAAGSPLLT------SEHSNRRKPNKRKRTRKGGE 184
ALQV ++ S L ++L+ A P + SEH RR + R+R+ G
Sbjct: 341 ALQVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAVVCGGMSEHKQRRL--LQGRSRRAGV 398
Query: 185 D 185
D
Sbjct: 399 D 399
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+++ ++ + +++ L P ++K+I + G+ T I IP + R DV+GAA+T +
Sbjct: 23 MSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGR-DVMGAAQTGT 81
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMV 142
GKT +F LP +QRLL + +A +P H +RALI+ PTRELA QV
Sbjct: 82 GKTASFSLPIIQRLLPQASTSA-------------SPARHPVRALILTPTRELADQVAAN 128
Query: 143 ASPSLKSNSLTLAMAAG 159
K +L A+ G
Sbjct: 129 VQAYAKHTALRSAVVFG 145
>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 471
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHP + I +G+ T I IP++ +DV+G A+T +GKT AFGLP L
Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVI-SGQDVLGLAQTGTGKTAAFGLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL++E +GH+R L++ PTRELA Q+
Sbjct: 62 RLVQEE-------------------RGHVRGLVLAPTRELAEQI 86
>gi|91207158|sp|Q4WMS3.2|MAK5_ASPFU RecName: Full=ATP-dependent RNA helicase mak5
Length = 777
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E + + AW+ L L P ++ + K+ F TS+ +A IP + + DVIG A T SG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+ LE++ +E+ E + ALI++PTRELA Q+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQL 300
>gi|240281972|gb|EER45475.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H143]
Length = 542
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 162 FSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 220
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 221 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 264
Query: 156 MAAG 159
+ G
Sbjct: 265 IVIG 268
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ LHP + + G+ E T I IP A Q +D+IG A+T +GKT AF LP LQ
Sbjct: 3 FENFDLHPAVRDGVKSAGYTEPTPIQAQAIPP-ALQGRDLIGLAQTGTGKTTAFVLPMLQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RLL P+G LR LI++PTRELA Q+
Sbjct: 62 RLLR-------------------GPRGKLRGLIVSPTRELAEQI 86
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|407918962|gb|EKG12222.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 523
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+ +++L+L K+I ++GF T + K IP L R DV+GAA+T SGKT AF +P
Sbjct: 109 ETFDQLQLSDKTQKAIQEMGFTTMTEVQKKAIPPLLAGR-DVLGAAKTGSGKTLAFLIPV 167
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L + ++ P+ A++I+PTRELALQ+ VA ++ ++ T
Sbjct: 168 VEML----------------HSLRFKPRNGTGAIVISPTRELALQIFGVARELMEHHTQT 211
Query: 154 LAMAAG 159
+ G
Sbjct: 212 FGIVMG 217
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+++ ++ + +++ L P ++K+I + G+ T I IP + R DV+GAA+T +
Sbjct: 1 MSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGR-DVMGAAQTGT 59
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMV 142
GKT +F LP +QRLL + +A +P H +RALI+ PTRELA QV
Sbjct: 60 GKTASFSLPIIQRLLPQANTSA-------------SPARHPVRALILTPTRELADQVAAN 106
Query: 143 ASPSLKSNSLTLAMAAG 159
K +L A+ G
Sbjct: 107 VQAYAKHTALRSAVVFG 123
>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703981|gb|EMD44318.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba histolytica
KU27]
Length = 432
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 24/128 (18%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ +L L P ++K + LG+K+ T I + IP +A Q+KD+IG A+T SGKT +F LP +
Sbjct: 10 TFKDLGLIPEVLKVVEYLGYKKPTRIQENSIP-VALQKKDIIGIAQTGSGKTASFLLPMV 68
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV------ASPSLK 148
Q LL +EK +G +II PTRELA QV+ V A P L
Sbjct: 69 QHLLNVKEK------NRG-----------FYCIIIEPTRELAAQVVEVIDEMGKALPGLT 111
Query: 149 SNSLTLAM 156
S L M
Sbjct: 112 SCLLVGGM 119
>gi|443897458|dbj|GAC74798.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 660
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
F+ ++ + L P L++S+ LGF T I + IP LA KD++ A T SGKT A+GLP
Sbjct: 57 FNVFSHI-LDPRLLRSLADLGFGIPTPIQQKAIP-LALAGKDILARARTGSGKTLAYGLP 114
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL-RALIINPTRELALQVL 140
LQ++L+ + AK PK L RAL++ PTRELA QV
Sbjct: 115 LLQKVLDAKAAVAKS-----------DPKHQLTRALVLVPTRELAEQVF 152
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|90409157|ref|ZP_01217275.1| lipoate-protein ligase A, partial [Psychromonas sp. CNPT3]
gi|90309743|gb|EAS37910.1| lipoate-protein ligase A [Psychromonas sp. CNPT3]
Length = 321
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++L L P ++++I +LG+K+ T I + IP + R DVI A+T +GKT AF LP L
Sbjct: 2 SFSKLGLSPQILQAISELGYKKPTPIQEKAIPVILKGR-DVIACAQTGTGKTGAFVLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT- 153
+RL +E E AK +R LI+ PTRELA+Q+ + SLT
Sbjct: 61 ERLKDEPEIRAK----------------RIRVLILTPTRELAIQIEANVKAYSQHLSLTS 104
Query: 154 LAMAAG 159
LAM G
Sbjct: 105 LAMYGG 110
>gi|429319791|emb|CCP33100.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034183]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 93
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RLL + +A +P H +RALI+ PTRELA QV
Sbjct: 94 RLLPQANTSA-------------SPARHPVRALILTPTRELADQV 125
>gi|159124341|gb|EDP49459.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus A1163]
Length = 795
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E + + AW+ L L P ++ + K+ F TS+ +A IP + + DVIG A T SG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+ LE++ +E+ E + ALI++PTRELA Q+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQL 300
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ G ++AL++ PTRELA+QV
Sbjct: 63 KV--------------------DVKNGAIQALVVAPTRELAIQV 86
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
ST D + ++ L ++K+I LGF + T I + IP +A KD++G A T SGKT AF
Sbjct: 170 STTCDTFLQMNLSRPILKAISSLGFTKPTPIQASTIP-VALLGKDIVGNAVTGSGKTAAF 228
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149
+P L+RLL EKG+ A R LI+ PTRELA+Q V
Sbjct: 229 MIPMLERLL---------YREKGKRA------AATRCLILLPTRELAVQCYEVGKRLGAH 273
Query: 150 NSLTLAMAAGS-PLLTSEHSNRRKPN 174
+ + G L E + R++P+
Sbjct: 274 TDIQFCLLVGGLSLKAQEAALRQRPD 299
>gi|325088110|gb|EGC41420.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H88]
Length = 635
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 158 FSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 216
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 217 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 260
Query: 156 MAAG 159
+ G
Sbjct: 261 IVIG 264
>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 453
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHP + I +G+ T I IP++ +DV+G A+T +GKT AFGLP L
Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVV-SGQDVLGLAQTGTGKTAAFGLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL++E +GH+R L++ PTRELA Q+
Sbjct: 62 RLVQEE-------------------RGHVRGLVLAPTRELAEQI 86
>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 513
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+ LH +++++ +GF+E+T+I +P +A Q +D+IG A+T +GKT AFG+P ++
Sbjct: 4 FNDFGLHHSIVRALSNMGFEEATAIQDQTVP-VALQGRDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+ E G+++ +++ PTRELA+QV
Sbjct: 63 RMDET--------------------SGNIQGVVLTPTRELAVQV 86
>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503322|ref|YP_003725262.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387788640|ref|YP_006253708.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|417313062|ref|ZP_12099774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418083388|ref|ZP_12720585.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418085577|ref|ZP_12722756.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418094373|ref|ZP_12731500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418101042|ref|ZP_12738126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418119027|ref|ZP_12755984.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418142096|ref|ZP_12778909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418151090|ref|ZP_12787836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418153319|ref|ZP_12790057.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|418164879|ref|ZP_12801548.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418196212|ref|ZP_12832690.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198412|ref|ZP_12834871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223785|ref|ZP_12850425.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418228090|ref|ZP_12854707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425531|ref|ZP_13965727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419427644|ref|ZP_13967825.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429784|ref|ZP_13969948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436377|ref|ZP_13976465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438621|ref|ZP_13978689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419445096|ref|ZP_13985111.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419447242|ref|ZP_13987247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419449374|ref|ZP_13989370.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419502236|ref|ZP_14041920.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519298|ref|ZP_14058904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419527922|ref|ZP_14067465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287857|ref|ZP_15738620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|421290152|ref|ZP_15740902.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|421305543|ref|ZP_15756197.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353754608|gb|EHD35220.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353756286|gb|EHD36887.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353764869|gb|EHD45417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353771503|gb|EHD52012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353790979|gb|EHD71360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806347|gb|EHD86621.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814300|gb|EHD94526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353816870|gb|EHD97078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|353829343|gb|EHE09476.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353860830|gb|EHE40770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862511|gb|EHE42443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353878583|gb|EHE58413.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880485|gb|EHE60300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379138382|gb|AFC95173.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|379537028|gb|EHZ02213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379549962|gb|EHZ15064.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566075|gb|EHZ31066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379572789|gb|EHZ37746.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600449|gb|EHZ65230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613198|gb|EHZ77911.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379614782|gb|EHZ79492.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379617837|gb|EHZ82517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379618992|gb|EHZ83666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379621992|gb|EHZ86628.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379641135|gb|EIA05673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395886420|gb|EJG97436.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|395887837|gb|EJG98851.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|395904501|gb|EJH15415.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|70991861|ref|XP_750779.1| ATP dependent RNA helicase [Aspergillus fumigatus Af293]
gi|66848412|gb|EAL88741.1| ATP dependent RNA helicase, putative [Aspergillus fumigatus Af293]
Length = 795
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E + + AW+ L L P ++ + K+ F TS+ +A IP + + DVIG A T SG
Sbjct: 192 TEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQIL-EGHDVIGKASTGSG 250
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+ LE++ +E+ E + ALI++PTRELA Q+
Sbjct: 251 KTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPI-----ALILSPTRELAHQL 300
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|418087275|ref|ZP_12724444.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418112928|ref|ZP_12749928.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418121655|ref|ZP_12758598.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418162615|ref|ZP_12799297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418176382|ref|ZP_12812973.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418200618|ref|ZP_12837061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|418219306|ref|ZP_12845971.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418239122|ref|ZP_12865673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419442942|ref|ZP_13982969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419455950|ref|ZP_13995907.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419460394|ref|ZP_14000322.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462742|ref|ZP_14002645.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419491499|ref|ZP_14031237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419523966|ref|ZP_14063541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|419526295|ref|ZP_14065854.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|419532799|ref|ZP_14072314.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421207032|ref|ZP_15664084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|421230207|ref|ZP_15686871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421236689|ref|ZP_15693286.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421268751|ref|ZP_15719620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|421275311|ref|ZP_15726140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285836|ref|ZP_15736612.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|421292475|ref|ZP_15743209.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|421312409|ref|ZP_15763011.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444409691|ref|ZP_21206276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444412727|ref|ZP_21209046.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444415144|ref|ZP_21211388.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444423615|ref|ZP_21219207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|353758291|gb|EHD38883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353783290|gb|EHD63719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353792491|gb|EHD72863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353827127|gb|EHE07281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353840453|gb|EHE20517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353864159|gb|EHE44077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353873666|gb|EHE53525.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353892113|gb|EHE71862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530174|gb|EHY95414.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379530530|gb|EHY95769.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379551642|gb|EHZ16736.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379556374|gb|EHZ21429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379557540|gb|EHZ22584.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379592861|gb|EHZ57676.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605319|gb|EHZ70070.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379627926|gb|EHZ92532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395574368|gb|EJG34946.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395593733|gb|EJG53975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395601452|gb|EJG61599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395869005|gb|EJG80121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|395873275|gb|EJG84367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395885823|gb|EJG96844.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|395891782|gb|EJH02776.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|395909263|gb|EJH20139.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444273966|gb|ELU79621.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444278936|gb|ELU84355.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444280573|gb|ELU85935.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444286587|gb|ELU91558.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 36 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 94
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RLL + +A +P H +RALI+ PTRELA QV
Sbjct: 95 RLLPQANTSA-------------SPARHPVRALILTPTRELADQV 126
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|346977175|gb|EGY20627.1| ATP-dependent RNA helicase DBP10 [Verticillium dahliae VdLs.17]
Length = 899
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I K GF + T I + IP L RKDV+G A T SGKT AF +P ++
Sbjct: 89 FQVMGLNSNLLRAITKKGFVQPTPIQRKTIP-LIMDRKDVVGMARTGSGKTAAFVIPMIE 147
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RL + ++ K RALI++P+RELA+Q L V K L A
Sbjct: 148 RL------------------KTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAA 189
Query: 156 MAAGSPLLTSEHS 168
+ G + + S
Sbjct: 190 LVVGGDSMDEQFS 202
>gi|302890093|ref|XP_003043931.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
gi|256724850|gb|EEU38218.1| hypothetical protein NECHADRAFT_99434 [Nectria haematococca mpVI
77-13-4]
Length = 760
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW L L P ++ +I KLGF + T I + IP + +DVIG A+T SGKT AFG+P +
Sbjct: 195 AWVPLNLSPQILSAIAKLGFTKPTLIQEKTIPEIVSG-EDVIGKAQTGSGKTLAFGIPMV 253
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ LE L E+G E+ P +++++PTRELA Q+
Sbjct: 254 EKWLE--------LYEQG--VERTGP----MSVVLSPTRELAKQL 284
>gi|303312885|ref|XP_003066454.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106116|gb|EER24309.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320031627|gb|EFW13587.1| ATP-dependent RNA helicase HAS1 [Coccidioides posadasii str.
Silveira]
Length = 604
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I ++GF+ T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 126 FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGR-DVLGAAKTGSGKTLSFLIPAVE 184
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 185 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 228
Query: 156 MAAG 159
+ G
Sbjct: 229 IVIG 232
>gi|119192364|ref|XP_001246788.1| probable ATP-dependent RNA helicase [Coccidioides immitis RS]
gi|118572554|sp|Q1EA54.1|HAS1_COCIM RecName: Full=ATP-dependent RNA helicase HAS1
Length = 604
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I ++GF+ T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 126 FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGR-DVLGAAKTGSGKTLSFLIPAVE 184
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 185 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 228
Query: 156 MAAG 159
+ G
Sbjct: 229 IVIG 232
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P +MKSI K+GF+E+T I IP L+ + KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FQDLGLSPAMMKSIKKMGFEEATPIQAQTIP-LSLENKDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +++ ++ +++ PTRELA+QV
Sbjct: 63 KIDIDQDV--------------------IQGIVVAPTRELAIQV 86
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K +L
Sbjct: 72 RLLPHASTSA-------------SPARHPVRALILTPTRELADQVAANVHAYAKHTALRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|242764605|ref|XP_002340809.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218724005|gb|EED23422.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 765
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPA 93
AW+ L L P L S+ KL F ++I +A IP LA DV+G A T SGKT AFG+P
Sbjct: 183 AWDSLGLSPALQTSLSKLKFSTPSTIQQAVIPEVLAGH--DVVGKASTGSGKTLAFGIPI 240
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+ L R + E+K +E++ ALI++PTRELA Q+
Sbjct: 241 LEYYLGTRGQHGTPKEKKKKESQPI-------ALILSPTRELAHQL 279
>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
SAW760]
Length = 432
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 24/127 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P ++K + LG+K+ T I + IP +A Q+KD+IG A+T SGKT +F LP +Q
Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTKIQENSIP-VALQKKDIIGIAQTGSGKTASFLLPMIQ 69
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV------ASPSLKS 149
LL +EK +II PTRELA QV+ V A P L S
Sbjct: 70 HLLNVKEK-----------------NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMS 112
Query: 150 NSLTLAM 156
L M
Sbjct: 113 CLLVGGM 119
>gi|444398031|ref|ZP_21195514.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
gi|444260688|gb|ELU66996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
Length = 501
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|421307797|ref|ZP_15758439.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
gi|395907182|gb|EJH18076.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|392863973|gb|EAS35240.2| ATP-dependent RNA helicase HAS1 [Coccidioides immitis RS]
Length = 672
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I ++GF+ T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 194 FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGR-DVLGAAKTGSGKTLSFLIPAVE 252
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 253 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 296
Query: 156 MAAG 159
+ G
Sbjct: 297 IVIG 300
>gi|418977410|ref|ZP_13525229.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383349927|gb|EID27841.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|417923705|ref|ZP_12567162.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836587|gb|EGU70798.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 525
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 25/116 (21%)
Query: 25 NEAEIS-TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
N E+S T F N L L P L++++ LG+K +TSI IP+ A Q +D+IG A+T S
Sbjct: 24 NSGEVSETPF---NTLGLIPELLQTVEALGYKNATSIQAQAIPS-ALQDRDIIGVAKTGS 79
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT AF LP LQ+ E+ PK L A I+ PTRELA Q+
Sbjct: 80 GKTAAFALPILQKWWED-------------------PK-PLYACILAPTRELAYQI 115
>gi|417687029|ref|ZP_12336303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418160286|ref|ZP_12796985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353822019|gb|EHE02195.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
Length = 603
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 18 DAQEELVNEA---EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
D EE+ EA ++ ++EL+LHPL+ ++I K G+ + T + K IP+L R D
Sbjct: 34 DKYEEIPVEATGSDVPRPCTVFDELQLHPLIQENIKKSGYTKPTPVQKYSIPSLLSCR-D 92
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
++ A+T SGKT AF +P + ++ +M + P LI++PTRE
Sbjct: 93 LMSCAQTGSGKTAAFLVPVINHIIRNESTTMRMPQVMSTSRRTVFPV----VLILSPTRE 148
Query: 135 LALQ 138
LA+Q
Sbjct: 149 LAMQ 152
>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
gi|74634065|sp|Q6C7D2.1|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica CLIB122]
Length = 605
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 27/165 (16%)
Query: 8 TVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
+ VV P DA E+V+ A E ++ + L M+S+ +GF+ T + + IP
Sbjct: 108 STAVVTTAPADA--EVVHIAS-DAERKPFSTIPLSENTMQSLKDMGFETMTPVQEKTIPP 164
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127
L R DV+GAA+T SGKT AF +PA++ L K+ P+ +
Sbjct: 165 LLAGR-DVLGAAKTGSGKTLAFLIPAIEML----------------RKLKFKPRNGTGVI 207
Query: 128 IINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
+++PTRELALQ+ VA + ++S TL + G +NRR+
Sbjct: 208 VVSPTRELALQIYGVARDLMANHSQTLGIVIGG-------NNRRQ 245
>gi|366090606|ref|ZP_09456972.1| ATP-dependent RNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 503
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L ++K+I + GF+E+T I + IP L +RKDVIG A+T +GKT AFGLP +Q
Sbjct: 3 FSELGLDADILKAIKRSGFEEATPIQEETIP-LVLKRKDVIGQAQTGTGKTAAFGLPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ K ++A+II+PTRELA+Q
Sbjct: 62 NI--------------------DTSKRQIQAVIISPTRELAIQ 84
>gi|241949959|ref|XP_002417702.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
gi|223641040|emb|CAX45414.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
Length = 568
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+E + L+ I +LG+ E TS+ +A IP LA ++DV+G AET SGKT AF +P L
Sbjct: 157 WHEGLNNDKLVSIISQLGYDEPTSVQRASIP-LALMKRDVVGVAETGSGKTLAFLIPVLN 215
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L E K + E P G LI+ PTRELALQ+
Sbjct: 216 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQI 249
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ G ++AL++ PTRELA+QV
Sbjct: 63 KV--------------------DVKNGAIQALVVAPTRELAIQV 86
>gi|441506222|ref|ZP_20988197.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441426010|gb|ELR63497.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 428
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ L L L+ ++ LGF E T + K IP LA D++ A+T +GKT AF LP L
Sbjct: 3 FQALGLQSPLVDTVNALGFTEPTPVQKQAIPQVLAGH--DIMAGAQTGTGKTAAFALPVL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q LL + K +E + EE+ +RALI+ PTRELA QV + K+ +
Sbjct: 61 QCLLAQ-PKPEVSVEAQSEESRDDRANIQIRALILTPTRELAQQVYDSVTEYSKATPVKT 119
Query: 155 AMAAG 159
A+A G
Sbjct: 120 AVAYG 124
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 93
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K +L
Sbjct: 94 RLLPHASTSA-------------SPARHPVRALILTPTRELADQVAANVHAYAKHTALRS 140
Query: 155 AMAAG 159
A+ G
Sbjct: 141 AVVFG 145
>gi|398804512|ref|ZP_10563506.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398093685|gb|EJL84061.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 575
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P ++K++ + G+ T I IPA+ + D++G A+T +GKT AF LP LQ
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVL-KGVDLLGGAQTGTGKTAAFTLPLLQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E A++ +G A +RALI+ PTRELA QV
Sbjct: 62 RLSTE----ARLTNRRGVNA--------VRALIMTPTRELAAQV 93
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 18/114 (15%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
EA S A+ EL L P L+ ++ LG++E T I +A IP L DV+G A T +GK
Sbjct: 13 EASDSGSTSAFGELGLRPELLTALSDLGYEEPTPIQRAAIPPLLDG-ADVVGQAATGTGK 71
Query: 86 TRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T AF LP L R+ + +E++G AP AL++ PTRELA QV
Sbjct: 72 TAAFSLPVLHRIAD--------VEQRG-----VAPS----ALVLVPTRELAAQV 108
>gi|171690518|ref|XP_001910184.1| hypothetical protein [Podospora anserina S mat+]
gi|170945207|emb|CAP71318.1| unnamed protein product [Podospora anserina S mat+]
Length = 924
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 20/129 (15%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ + L+ L+++I K GF T I + IP L +R+DV+G A T SGKT AF +P +
Sbjct: 89 GFQAMGLNANLLRAITKKGFSVPTPIQRKTIP-LVLERRDVVGMARTGSGKTAAFVIPMI 147
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-T 153
+RL KG ++PK RALI++P+RELALQ L V + L T
Sbjct: 148 ERL-------------KG-----HSPKVGARALILSPSRELALQTLKVVKELGRGTDLKT 189
Query: 154 LAMAAGSPL 162
+ + G L
Sbjct: 190 ILLVGGDSL 198
>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
Length = 443
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K+++K G+K TS+ IP A +D++G+A T +GKT AF LPA+Q
Sbjct: 10 FEELDLSPQLLKALHKKGYKRPTSVQAQTIP-YALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ + G R LI+ PTRELA+QV A + +L++A
Sbjct: 69 HLLDYPRRKP----------------GAPRILILTPTRELAMQVAEQAEELAEFTNLSIA 112
Query: 156 MAAG 159
G
Sbjct: 113 TITG 116
>gi|296813881|ref|XP_002847278.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
gi|238842534|gb|EEQ32196.1| ATP-dependent RNA helicase MAK5 [Arthroderma otae CBS 113480]
Length = 749
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
AW+ L L P L S+ +L F + T I A IP + R DVIG A T SGKT AFGLP L
Sbjct: 174 AWDGLDLRPELQTSLSRLKFSKPTPIQTAAIPDILAGR-DVIGKAATGSGKTLAFGLPIL 232
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
Q LL K + + + +K ALI++PTRELA Q++
Sbjct: 233 QYLLNNNNKHGQGGIKSSSKEKKPI------ALILSPTRELAHQLV 272
>gi|378732005|gb|EHY58464.1| ATP-dependent RNA helicase HAS1 [Exophiala dermatitidis NIH/UT8656]
Length = 631
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK++ ++ F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 152 FSELGLSEKTMKALNEMKFETMTEIQRRGIPPLMAGR-DVLGAAKTGSGKTLAFLIPAVE 210
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 211 ML----------------HALRFKPRNGTGVIVVSPTRELALQIFGVARDLMQFHSQTFG 254
Query: 156 MAAG 159
+ G
Sbjct: 255 IVIG 258
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDDSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 278 TRQLAQFCSITTCLAVG 294
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 25/149 (16%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++++ L ++K+I LGFK+ T I KA +P + KD+ A T +G
Sbjct: 157 EDASQYDDQLTFDDMNLSRPILKAITALGFKQPTPIQKACVP-VGLLGKDLCACAATGTG 215
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 216 KTAAFMLPVLERLV-------------------YKPRTSQVTRVLVLVPTRELGIQVHSV 256
Query: 143 ASPSLKSNSLTLAMAAGSPLLTSEHSNRR 171
A + S+T +A G L S+ + R
Sbjct: 257 ARQLAQFTSITTCLAVGGLDLKSQEAALR 285
>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
SAW760]
Length = 432
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 24/127 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P ++K + LG+K+ T I + IP +A Q+KD+IG A+T SGKT +F LP +Q
Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTKIQENSIP-VALQKKDIIGIAQTGSGKTASFLLPMIQ 69
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV------ASPSLKS 149
LL +EK +II PTRELA QV+ V A P L S
Sbjct: 70 HLLNVKEK-----------------NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMS 112
Query: 150 NSLTLAM 156
L M
Sbjct: 113 CLLVGGM 119
>gi|146323887|ref|XP_751498.2| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|91206842|sp|Q4WQM4.2|HAS1_ASPFU RecName: Full=ATP-dependent RNA helicase has1
gi|129557486|gb|EAL89460.2| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
gi|159125568|gb|EDP50685.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
Length = 622
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I +GF+ T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 142 FTELGLSEKTLKAINDMGFETMTEIQRRTIPPLLAGR-DVLGAAKTGSGKTLSFLIPAVE 200
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 201 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYG 244
Query: 156 MAAG 159
+ G
Sbjct: 245 IVIG 248
>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 409
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L LH L+ ++ +LG+ + T I IPA+ ++DV+ A+T +GKT AF LP L
Sbjct: 2 SFSALSLHSQLVNTLAELGYLQPTPIQVEAIPAILA-KQDVMAGAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
Q+LL + E + APK +RAL++ PTRELA+QV K + +
Sbjct: 61 QQLLLDNE-------------SQDAPK-DIRALVLVPTRELAVQVQQSFVKYAKGTDIRV 106
Query: 155 AMAAG 159
+A G
Sbjct: 107 GIAYG 111
>gi|81429227|ref|YP_396228.1| ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K]
gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
sakei 23K]
Length = 530
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L +MK+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLSEPIMKAISRAGFEEATPIQGETIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L L+ + ++ALII+PTRELA+Q
Sbjct: 62 NLDLDNPD---------------------IQALIISPTRELAIQ 84
>gi|402574642|ref|YP_006623985.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402255839|gb|AFQ46114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 500
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+M+SI +GF+E+T I + IP+ A + KD+IG A+T +GKT A+G+P ++
Sbjct: 4 FTDLNLSELVMRSIINMGFEETTPIQEQTIPS-AMEGKDLIGQAQTGTGKTAAYGIPLVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R++ + E +++ +++ PTRELA+QV
Sbjct: 63 RIMGQSE--------------------NIQGIVLAPTRELAVQV 86
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 31/174 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+ S+ +LGF+E T I + IP +A KD+IG A+T +GKT AFGLP L
Sbjct: 3 FTDLNLKNELLTSLDELGFEEPTPIQQQGIP-IALSGKDLIGQAQTGTGKTAAFGLPLL- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV---LMVASPSLKSNS 151
K PK +++ALI+ PTRELA+QV L S LK+N
Sbjct: 61 --------------------NKIDPKNTNVQALIVAPTRELAIQVQEELYRLSKVLKTN- 99
Query: 152 LTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQPKTTTLL 205
+ G+P+ + +R +++ + G LD LK N L TL+
Sbjct: 100 -VYVVYGGAPI---DKQIKRLRSQKVQVLVGTPGRLLDLLKRNVLKLNAVQTLV 149
>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
Length = 783
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W + L L K I K GF++ T I + IP L KD++ + T SGKT AF +P LQ
Sbjct: 33 WQAIGLDHTLFKGIQKKGFRQPTPIQRKAIP-LIIDGKDIVAMSRTGSGKTAAFVIPILQ 91
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L K+ + KG +RALII PTRELA+Q +V + L A
Sbjct: 92 KL--------KVRDMKG-----------IRALIIEPTRELAIQTFIVVKELGRFTGLRCA 132
Query: 156 MAAG 159
+ G
Sbjct: 133 VLVG 136
>gi|302900629|ref|XP_003048299.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729232|gb|EEU42586.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 590
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKD 74
PD Q L A E ++ EL+L MK+I ++GF + T I + IP +LA +D
Sbjct: 98 PDGGQLTLPPVA--GAEAQSFEELKLSDKTMKAIKEMGFTKMTEIQRRGIPPSLAG--RD 153
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
V+GAA+T SGKT AF +P ++ L A ++ P+ ++++PTRE
Sbjct: 154 VLGAAKTGSGKTLAFLIPVVEML----------------SALRFKPRNGTGVIVVSPTRE 197
Query: 135 LALQVLMVASPSLKSNSLTLAMAAG 159
LALQ+ VA + +S T + G
Sbjct: 198 LALQIFGVARELMAHHSQTYGIVIG 222
>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
Length = 445
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K+++K G+K TS+ IP A +D++G+A T +GKT AF LPA+Q
Sbjct: 10 FEELDLSPQLLKALHKKGYKRPTSVQAQTIP-YALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ + G R LI+ PTRELA+QV A + +L++A
Sbjct: 69 HLLDYPRRKP----------------GAPRILILTPTRELAMQVAEQAEELAEFTNLSIA 112
Query: 156 MAAG 159
G
Sbjct: 113 TITG 116
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
Query: 31 TEFDA-WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
T DA +++ L P ++K+I G+ + T I IP + R DV+GAA+T +GKT +F
Sbjct: 7 TPVDATFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGR-DVMGAAQTGTGKTASF 65
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
LP +QRLL + +A +P H +RALI+ PTRELA QV
Sbjct: 66 SLPIIQRLLPQANTSA-------------SPARHPVRALILTPTRELADQV 103
>gi|390371036|dbj|GAB64917.1| DEAD/DEAH box helicase [Plasmodium cynomolgi strain B]
Length = 525
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 28/160 (17%)
Query: 18 DAQE-ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DA E + VN+A+ E + +L + +++SI +LG+K+ T+I + +P A Q++D+I
Sbjct: 111 DADEVDHVNDAD---ERATFRDLNICEEILQSIDELGWKKPTAIQRKMLP-YAFQKRDII 166
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
G +ET SGKT F +P LQ L E+R+ AL+I+PTREL
Sbjct: 167 GLSETGSGKTACFIIPILQELREKRQS--------------------FFALVISPTRELC 206
Query: 137 LQVLMVASPSLKSNSLT--LAMAAGSPLLTSEHSNRRKPN 174
+Q+ +L SN L + G ++T + ++PN
Sbjct: 207 IQIAQ-HFQALGSNLLVNICTIFGGVDIVTQSLNLAKRPN 245
>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
cuniculus]
Length = 789
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 25/144 (17%)
Query: 21 EELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+E+ E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+
Sbjct: 196 QEMGGFFEDASQYDESLSFQDMNLSRPLLKAISAMGFKQPTPIQKACIP-VGLLGKDICA 254
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTREL 135
A T +GKT AF LP L+RL+ Y P+ R L++ PTREL
Sbjct: 255 CAATGTGKTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTREL 295
Query: 136 ALQVLMVASPSLKSNSLTLAMAAG 159
+QV V + S+T +A G
Sbjct: 296 GIQVHSVTKQLAQFCSITTCLAVG 319
>gi|225559047|gb|EEH07330.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus G186AR]
Length = 631
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 154 FSELNLSDKTMKAIADMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 212
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 213 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 256
Query: 156 MAAG 159
+ G
Sbjct: 257 IVIG 260
>gi|402225555|gb|EJU05616.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 752
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 18/116 (15%)
Query: 29 ISTEFDAW--NELRLHPL---LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+ FD + E +L PL + +S++ LGF + T I IP +A Q +D+IG AET S
Sbjct: 151 VEQSFDEYLIPEWQLFPLKNQIKRSLHGLGFTKPTEIQSRSIP-IALQGRDIIGVAETGS 209
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT A+GLP + +LL K A ++ + + L ALI+ PTRELALQV
Sbjct: 210 GKTLAYGLPIINQLL---VKYAGVIPPE---------QRTLSALILAPTRELALQV 253
>gi|339238663|ref|XP_003380886.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
gi|316976157|gb|EFV59493.1| ATP-dependent RNA helicase DDX24 [Trichinella spiralis]
Length = 654
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W EL + ++ ++ L + E T I +P R D++GAAET SGKT AFG+P +
Sbjct: 96 WQELFVPEEILHALDDLEYFEPTPIQALCLPPAIRDRLDILGAAETGSGKTLAFGIPVIA 155
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL E + + H ALI+ PTRELA+Q+ S +K +L L
Sbjct: 156 GLLSENSDS----------------QIHPSALILTPTRELAIQIKDHLSSIMKYTNLKLT 199
Query: 156 MAAG 159
A G
Sbjct: 200 TATG 203
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
++ ++ L L P ++ ++ + G+ + I IP + R DV A T +GKT AF
Sbjct: 11 SDVPTFDGLGLDPRIVANVARAGYATPSPIQALAIPPIRDGR-DVEALARTGTGKTAAFA 69
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LP + RLL +A P GH+RALI++PTRELA Q ++
Sbjct: 70 LPVIHRLLT-----------GAGDAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGC 118
Query: 151 SLTLAMAAG 159
LT+A+A G
Sbjct: 119 GLTVALAIG 127
>gi|50309183|ref|XP_454597.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660391|sp|Q6CN92.1|SPB4_KLULA RecName: Full=ATP-dependent rRNA helicase SPB4
gi|49643732|emb|CAG99684.1| KLLA0E14367p [Kluyveromyces lactis]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 15/116 (12%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+W++L+ + P + +I +GF+ T + + IP L KDV+ + T SGKT AF +P
Sbjct: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIP-LFSGNKDVVVESVTGSGKTIAFVIP 64
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
L+RL++E +AK K H +LII+PTRELA Q+ V LK
Sbjct: 65 ILERLIKEEANSAKF------------KKSHFHSLIISPTRELASQIHDVIEDFLK 108
>gi|353235877|emb|CCA67883.1| related to MAK5-ATP-dependent RNA helicase [Piriformospora indica
DSM 11827]
Length = 703
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ L L P L++ I GF + T I + +P L+ +DVIG A+T SGKT AF LP L+
Sbjct: 127 WSNLGLSPTLLRRIKDQGFIKPTPIQRETLP-LSTSGRDVIGIAQTGSGKTLAFALPILR 185
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L K L + K +L+ALI+ PTRELALQV
Sbjct: 186 HILSTNR--LKSLRRQ---------KRNLKALIVAPTRELALQV 218
>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
27-2-CHN]
gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
115-3-CHN]
gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
jensenii JV-V16]
gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
27-2-CHN]
gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
115-3-CHN]
gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
jensenii JV-V16]
Length = 484
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L+ L+K+I + GF+E+T I + IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FTELGLNDALLKAIKRSGFEEATPIQEKTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ E + ++AL+I PTRELA+Q
Sbjct: 62 KI---------------NNKEHF-----IQALVIEPTRELAIQ 84
>gi|395241893|ref|ZP_10418893.1| RNA helicase DeaD [Lactobacillus pasteurii CRBIP 24.76]
gi|394480641|emb|CCI85133.1| RNA helicase DeaD [Lactobacillus pasteurii CRBIP 24.76]
Length = 490
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ LE+ K+ ++A+++ PTRELA+Q
Sbjct: 62 Q-LEKHNKS-------------------IQAIVVEPTRELAIQ 84
>gi|425734748|ref|ZP_18853065.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425480684|gb|EKU47848.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 592
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 18/104 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL LHP +++++ LG++ + I A IPAL R DVIG A+T +GKT AF LP L
Sbjct: 13 FAELGLHPEVLRAVEALGYESPSPIQAATIPALVAGR-DVIGLAQTGTGKTAAFALPILS 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L E A + A G AL++ PTRELALQV
Sbjct: 72 HLAE----AGR------------ASDGPF-ALVLTPTRELALQV 98
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L++SI K+GF+E+T I IP A Q DVIG A+T +GKT AFGLP LQ
Sbjct: 14 FNELGLDSALLESIEKMGFEEATPIQAQTIPK-ALQGLDVIGQAQTGTGKTAAFGLPMLQ 72
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ K ++ L+I PTRELA+Q
Sbjct: 73 KI--------------------DPSKKGVQGLVIAPTRELAIQ 95
>gi|342886208|gb|EGU86105.1| hypothetical protein FOXB_03374 [Fusarium oxysporum Fo5176]
Length = 774
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 8 TVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
T + + D A +E V+ A AW L L P ++ +I KL F + T I + IP
Sbjct: 183 TFGALADANDYADQEDVDMA-------AWVPLNLSPQILSAIAKLKFTKPTLIQEKTIPE 235
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127
+ DVIG A+T SGKT AFG+P ++R LE L+E+G E+ P A+
Sbjct: 236 ILAG-DDVIGKAQTGSGKTLAFGIPMVERWLE--------LQEQG--VERTGP----MAV 280
Query: 128 IINPTRELALQV 139
+++PTRELA Q+
Sbjct: 281 VLSPTRELAKQL 292
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL+L PLL+K++ + G+ + + I + IP + + +D++G A+T +GKT AF LP +Q
Sbjct: 3 FDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNG-QDLLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+E + K K +RALI+ PTRELALQ+
Sbjct: 62 NLMERPKNRQK--------------KKPVRALILTPTRELALQI 91
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ G ++AL++ PTRELA+QV
Sbjct: 63 KV--------------------DVKNGVIQALVVAPTRELAIQV 86
>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
Length = 776
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D E +A E ++++ L L+K+I +GFK+ T I KA +P + KD+
Sbjct: 185 DTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVP-VGLLGKDICA 243
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTREL 135
A T +GKT AF LP L+RL+ Y P+ R L++ PTREL
Sbjct: 244 CAATGTGKTAAFMLPVLERLI-------------------YKPRETQVTRVLVLVPTREL 284
Query: 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRR 171
+QV VA + +++ +A G L S+ + R
Sbjct: 285 GIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALR 320
>gi|383854020|ref|XP_003702520.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Megachile rotundata]
Length = 404
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 28/122 (22%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D +EE NE W +L + +L K+ L +K T I + IP L Q KD+IG
Sbjct: 9 DVEEENANEM-------TWKDLGIVDVLCKACEDLKWKSPTKIQRESIP-LTLQGKDIIG 60
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
AET SGKT AF LP LQ LLE P+ + ALI+ PTRELA
Sbjct: 61 LAETGSGKTAAFALPILQALLEN-------------------PQRYF-ALILTPTRELAF 100
Query: 138 QV 139
Q+
Sbjct: 101 QI 102
>gi|156379139|ref|XP_001631316.1| predicted protein [Nematostella vectensis]
gi|156218354|gb|EDO39253.1| predicted protein [Nematostella vectensis]
Length = 129
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 18/118 (15%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
L+K++ +LGF T I + IP +A KDV A T +GKT AF LP L+RLL ++
Sbjct: 23 LLKAVNELGFLHPTPIQASTIP-VALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQS 81
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
+R L+I PTRELA+Q+ V + K ++ + +AAG PL
Sbjct: 82 PA-----------------IRVLVITPTRELAIQIHSVTNNLSKYTNIQVCLAAGWPL 122
>gi|242798281|ref|XP_002483137.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218716482|gb|EED15903.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 591
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +++I ++GF+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 114 FTELNLSDRTLEAIKEMGFETMTEIQQRAIPPLMAGR-DVLGAAKTGSGKTLAFLIPAIE 172
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ LI++PTRELALQ+ VA L+ +S T
Sbjct: 173 LL----------------HSLKFKPRNGTGVLILSPTRELALQIWGVARQLLEKHSQTHG 216
Query: 156 MAAG 159
+ G
Sbjct: 217 IVMG 220
>gi|406859182|gb|EKD12251.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 762
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 10/115 (8%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
+ E T+ AW EL L P + ++ KLGF++ T I + IP + DV+G A T SG
Sbjct: 188 DAVEEETDVSAWTELDLSPDTLSALSKLGFQKPTLIQSSAIPEIMAGH-DVVGKASTGSG 246
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KT AFG+P L+ +E + L+E +E + P ALI++PTRELA Q+
Sbjct: 247 KTLAFGIPILESWIETYGQ----LDE--DELKASRPP---TALILSPTRELAHQL 292
>gi|237842773|ref|XP_002370684.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968348|gb|EEB03544.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
Length = 962
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARI-PALAHQRKDVIGAAETESGKTRAFGLPA 93
AW +L L L+++I L + T I A + PAL + +D++ A+T SGKT AF LP
Sbjct: 225 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPAL--EGRDLLANAQTGSGKTAAFLLPT 282
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR---ALIINPTRELALQVLMVASPSLKSN 150
L+RLL ++ + G P G LR AL++ PTRELA+Q + + K
Sbjct: 283 LERLLHSPGVRSRKMTANG-------PTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT 335
Query: 151 SLTLAMAAGSPLLTSEHSN-RRKPN 174
+T A+A G L + S R +P+
Sbjct: 336 PITHALACGGMTLKAHESALRHQPD 360
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+ +L+L L +++ ++G++ T I IP + Q +DV+GAA+T +GKT AF LP +
Sbjct: 2 AFAQLQLADPLARAVAEMGYETMTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAAFALPLM 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QR+L K E A + +RAL++ PTRELA+QV
Sbjct: 61 QRML------------KHENASTSPARHPVRALVLLPTRELAVQV 93
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 216 EDASQYDESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 274
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 275 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 315
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 316 TKQLAQFCSITTCLAVG 332
>gi|449296384|gb|EMC92404.1| hypothetical protein BAUCODRAFT_27693 [Baudoinia compniacensis UAMH
10762]
Length = 699
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +MK + +GF +T I + IP +A + KD++G A T SGKT AF +P L
Sbjct: 194 SFGAMSLSRPIMKGLASVGFSAATPIQRKAIP-VALEGKDIVGGAVTGSGKTAAFMIPIL 252
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R I+ PTRELALQ L VA +
Sbjct: 253 ERLL-------------------YRPKRVATTRVAILMPTRELALQCLAVAKKLAAFTDI 293
Query: 153 TLAMAAG 159
T A G
Sbjct: 294 TFGRAIG 300
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L L +++ ++G++ T I + IP + Q KDV+GAA+T +GKT AF LP L
Sbjct: 4 SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVL-QGKDVMGAAQTGTGKTAAFSLPLL 62
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QR+L K E A + +RAL++ PTRELA+QV
Sbjct: 63 QRML------------KHENASTSPARHPVRALVLLPTRELAVQV 95
>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
Length = 959
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARI-PALAHQRKDVIGAAETESGKTRAFGLPA 93
AW +L L L+++I L + T I A + PAL + +D++ A+T SGKT AF LP
Sbjct: 222 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPAL--EGRDLLANAQTGSGKTAAFLLPT 279
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR---ALIINPTRELALQVLMVASPSLKSN 150
L+RLL ++ + G P G LR AL++ PTRELA+Q + + K
Sbjct: 280 LERLLHSPGVRSRKMTANG-------PTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT 332
Query: 151 SLTLAMAAGSPLLTSEHSN-RRKPN 174
+T A+A G L + S R +P+
Sbjct: 333 PITHALACGGMTLKAHESALRHQPD 357
>gi|327348721|gb|EGE77578.1| ATP-dependent RNA helicase HAS1 [Ajellomyces dermatitidis ATCC
18188]
Length = 639
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 162 FSELDLSDKTMKAIADMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 220
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++I+PTRELALQ+ VA + +S T
Sbjct: 221 ML----------------SALRFKPRNGTGVIVISPTRELALQIFGVARELMAHHSQTYG 264
Query: 156 MAAG 159
+ G
Sbjct: 265 IVIG 268
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P ++++I +LGF+E+T I IP +A KD+IG A+T +GKT AFGLP +
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIP-IALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E E+ ALI+ PTRELA+QV
Sbjct: 63 KIAKEEERIV--------------------ALIMTPTRELAIQV 86
>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 460
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + + P L+ SI LGF+++T + +A IP L D++ ++T SGKT A+GLP LQ
Sbjct: 3 FQDFGIDPRLISSIEHLGFEQATEVQEAAIP-LILGGCDIMATSQTGSGKTIAYGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+L++R E + +RA+I+ PTRELA+QV
Sbjct: 62 RMLKQRR-----FEHRA-----------VRAVILAPTRELAIQV 89
>gi|15229677|ref|NP_188490.1| DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]
gi|75335038|sp|Q9LIH9.1|RH51_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 51
gi|9294321|dbj|BAB02218.1| DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|17979083|gb|AAL49809.1| putative DEAD box helicase protein [Arabidopsis thaliana]
gi|20465335|gb|AAM20071.1| putative DEAD box helicase protein [Arabidopsis thaliana]
gi|332642600|gb|AEE76121.1| DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]
Length = 568
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 24/129 (18%)
Query: 48 SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107
+I ++GF+ T I I L + KDV+GAA T SGKT AF +PA++ L +ER
Sbjct: 103 AIKEMGFQYMTQIQAGSIQPLL-EGKDVLGAARTGSGKTLAFLIPAVELLFKER------ 155
Query: 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH 167
++P+ ++I PTRELA+Q VA LK +S T++M G
Sbjct: 156 ----------FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGG------- 198
Query: 168 SNRRKPNKR 176
+NRR +R
Sbjct: 199 NNRRSEAQR 207
>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
Length = 962
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARI-PALAHQRKDVIGAAETESGKTRAFGLPA 93
AW +L L L+++I L + T I A + PAL + +D++ A+T SGKT AF LP
Sbjct: 225 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPAL--EGRDLLANAQTGSGKTAAFLLPT 282
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR---ALIINPTRELALQVLMVASPSLKSN 150
L+RLL ++ + G P G LR AL++ PTRELA+Q + + K
Sbjct: 283 LERLLHSPGVRSRKMTANG-------PTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT 335
Query: 151 SLTLAMAAGSPLLTSEHSN-RRKPN 174
+T A+A G L + S R +P+
Sbjct: 336 PITHALACGGMTLKAHESALRHQPD 360
>gi|346974113|gb|EGY17565.1| ATP-dependent RNA helicase HAS1 [Verticillium dahliae VdLs.17]
Length = 587
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L MK+I +GF + T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 112 FSQLNLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGR-DVLGAAKTGSGKTLAFLIPAIE 170
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + ++ P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 171 ML----------------SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTYG 214
Query: 156 MAAG 159
+ G
Sbjct: 215 IVIG 218
>gi|195154787|ref|XP_002018294.1| GL17630 [Drosophila persimilis]
gi|194114090|gb|EDW36133.1| GL17630 [Drosophila persimilis]
Length = 807
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 37/149 (24%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E E AWN L + +++++ + GFK T I +PA H +KD++GAAET SGKT
Sbjct: 202 EYEDELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTL 261
Query: 88 AFGLPALQRLLEERE-------------KAAKMLEEKGEEAEKYAP-------------- 120
AFG+P L ++E ++ K A + +E E P
Sbjct: 262 AFGIPMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDED 321
Query: 121 ----------KGHLRALIINPTRELALQV 139
+ L L++ PTRELA+QV
Sbjct: 322 SDAEEREQRKQTPLYGLVLTPTRELAVQV 350
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+L L P L++S+ LGF + T I IPA+ R D+I +++T SGKT A+ LP +Q
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGR-DLIVSSQTGSGKTLAYLLPMMQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL+ R + K RALI+ PTRELA QV + + LT A
Sbjct: 62 RLLKSRPLS----------------KRDARALILAPTRELAKQVYAQLRLFVANTPLTSA 105
Query: 156 MAAG 159
+ G
Sbjct: 106 LIVG 109
>gi|402075106|gb|EJT70577.1| ATP-dependent RNA helicase DED1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 609
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
LHP ++K+I G+K T I +PA+ H+ DVIG A+T SGKT AF +P + +L+
Sbjct: 138 LHPAMLKNIELCGYKTPTPIQSYCLPAI-HKGYDVIGIAQTGSGKTAAFLIPIINKLM-- 194
Query: 101 REKAAKMLEEKGEEA-EKYAPKGHLRA----LIINPTRELALQVL 140
KA K+ + A + G +RA L+I PTRELA+Q+
Sbjct: 195 -GKAKKLAAPRPNPATYNFDIHGPIRAEPLVLLICPTRELAIQIF 238
>gi|321458546|gb|EFX69612.1| hypothetical protein DAPPUDRAFT_300875 [Daphnia pulex]
Length = 621
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
EI+ + W + L +++++++LGF+ T+I A +P RKD++GAAET SGKT
Sbjct: 33 EITPDMIIWKAMYLPDPIVRAVWELGFQTPTAIQLACLPTAMKGRKDIVGAAETGSGKTL 92
Query: 88 AFGLPALQRLLEEREKAAKMLEE 110
AFG+P L +L+++E K L++
Sbjct: 93 AFGIPILNGILKDKEFELKKLKQ 115
>gi|198458698|ref|XP_002138576.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
gi|198136429|gb|EDY69134.1| GA24853 [Drosophila pseudoobscura pseudoobscura]
Length = 807
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 37/149 (24%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E E AWN L + +++++ + GFK T I +PA H +KD++GAAET SGKT
Sbjct: 202 EYKDELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTL 261
Query: 88 AFGLPALQRLLEERE-------------KAAKMLEEKGEEAEKYAP-------------- 120
AFG+P L ++E ++ K A + +E E P
Sbjct: 262 AFGIPMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDED 321
Query: 121 ----------KGHLRALIINPTRELALQV 139
+ L L++ PTRELA+QV
Sbjct: 322 SDAEEREQRKQTPLYGLVLTPTRELAVQV 350
>gi|415749990|ref|ZP_11477934.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381318284|gb|EIC59009.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
Length = 511
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L++ I K GF E + I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLEEIEKAGFVEVSPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
Length = 441
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
E + EL L P L++++ K G+K T+I + IP A + +DV+G+A T +GKT AF L
Sbjct: 3 ELITFEELDLSPELLQALEKKGYKRPTAIQQETIPP-AMEGRDVLGSAPTGTGKTAAFLL 61
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
PALQ LL+ + G R LI+ PTRELA+QV A + +
Sbjct: 62 PALQHLLDHPRRKP----------------GPPRILILTPTRELAMQVAEQAEELAQFTN 105
Query: 152 LTLAMAAG 159
L +A G
Sbjct: 106 LKIATITG 113
>gi|384158050|ref|YP_005540123.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|384167076|ref|YP_005548454.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens XH7]
gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|341826355|gb|AEK87606.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
XH7]
Length = 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 227 EDASQYDESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 285
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 286 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 326
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 327 TKQLAQFCSITTCLAVG 343
>gi|149238155|ref|XP_001524954.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152032522|sp|A5E2Z9.1|HAS1_LODEL RecName: Full=ATP-dependent RNA helicase HAS1
gi|146451551|gb|EDK45807.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 559
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF++ T + IP L R DV+GAA+T SGKT AF LPA++ L + K
Sbjct: 105 MKAIKEMGFQKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLLPAVELLYSLKIK-- 161
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 162 --------------PRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGIVIG 201
>gi|421732891|ref|ZP_16172007.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073252|gb|EKE46249.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|451348181|ref|YP_007446812.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
gi|449851939|gb|AGF28931.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
Length = 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|336055390|ref|YP_004563677.1| ATP-dependent RNA helicase-like protein [Lactobacillus
kefiranofaciens ZW3]
gi|333958767|gb|AEG41575.1| ATP-dependent RNA helicase-like protein [Lactobacillus
kefiranofaciens ZW3]
Length = 485
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FSELGLNDALLKAIKRSGFEEATPIQAQTIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ +E EK ++A+II PTRELA+Q
Sbjct: 62 TINKE-EKV-------------------IQAVIIEPTRELAIQ 84
>gi|426197540|gb|EKV47467.1| hypothetical protein AGABI2DRAFT_118043 [Agaricus bisporus var.
bisporus H97]
Length = 926
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ G++ T I ++ IP+L A+ +D++G A T SGK+ A+ +P
Sbjct: 99 SFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVGMARTGSGKSLAYMIPL 158
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
+QRL G + + RALI+ PTRELALQ+L V + + T
Sbjct: 159 VQRL-------------GGRHSTTFGA----RALILLPTRELALQILKVGKELSRGWNST 201
Query: 154 LAMAAGSPLLTSEHSNRRKPNKRKRTRKGGE--DEKLDSLKWNPLSQPKTTTLLPSSLAL 211
AG E N N R GGE DE+ + + NP T L +
Sbjct: 202 SGDHAGD----KEGQNSNSQNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVE 257
Query: 212 MNL 214
MNL
Sbjct: 258 MNL 260
>gi|302416461|ref|XP_003006062.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
gi|261355478|gb|EEY17906.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
Length = 587
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L MK+I +GF + T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 112 FSQLNLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGR-DVLGAAKTGSGKTLAFLIPAIE 170
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + ++ P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 171 ML----------------SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTYG 214
Query: 156 MAAG 159
+ G
Sbjct: 215 IVIG 218
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + LHP L++S+ G+ T I +PA+ R DV+GAA+T +GKT AF LP L
Sbjct: 19 FADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGR-DVMGAAQTGTGKTAAFTLPILH 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RL+ +A +P H +R LI+ PTRELA QV
Sbjct: 78 RLMPLANTSA-------------SPARHPVRTLILTPTRELADQV 109
>gi|429503967|ref|YP_007185151.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485557|gb|AFZ89481.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|380448994|gb|AFD54569.1| vasa [Lepeophtheirus salmonis]
Length = 539
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 13/123 (10%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D Q ++ ++ + + ++EL L LL+++I G+K+ T I K IP + +R D++
Sbjct: 100 DSVQVDVKGTGDLPPKINCFSELNLRELLVRNIGLSGYKKPTPIQKTGIPLILAKR-DIM 158
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
++T SGKT AF LP +Q +L++ E ++ ++K P LI+ PTRELA
Sbjct: 159 ACSQTGSGKTAAFLLPIIQFILQKGEFSSASSQQK--------PS----CLIVAPTRELA 206
Query: 137 LQV 139
+Q+
Sbjct: 207 IQI 209
>gi|384264053|ref|YP_005419760.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854495|ref|YP_007496178.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380497406|emb|CCG48444.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078755|emb|CCP20506.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEA-------TIQALVIAPTRELAVQ 84
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+ S+ + GF+E+T I +A IP LA KDVIG A+T +GKT AFGLP L
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIP-LALAGKDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQ 138
EK P H L+ L+I PTRELA+Q
Sbjct: 61 --------------------EKIDPANHQLQGLVIAPTRELAIQ 84
>gi|406601713|emb|CCH46674.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 588
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E ++ L+ I+KLG+KE T I +A IP ++ +KD+IG AET SGKT A+ +P L
Sbjct: 187 WRESKIPLELLDIIHKLGYKEPTPIQRASIP-ISLSKKDIIGIAETGSGKTLAYLIPMLS 245
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LL+ L E ++ P G LI+ PTRELA Q+
Sbjct: 246 KLLK--------LPRLNEFSKADGPYG----LILVPTRELAQQI 277
>gi|354614919|ref|ZP_09032743.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353220726|gb|EHB85140.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 576
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 19/111 (17%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
++ D + +L LHP L +++ +LG+ E T I +A +P L R D++G A T +GKT A
Sbjct: 11 VTEHLDGFTDLALHPALSRALAELGYSEPTPIQRAAVPPLLAGR-DLVGQAATGTGKTAA 69
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
F LP L L + E+G R L++ PTRELA QV
Sbjct: 70 FALPLLHHLAD---------GERGTTP---------RVLVLVPTRELAAQV 102
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P ++++I +LGF+E+T I IP +A KD+IG A+T +GKT AFGLP +
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIP-IALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E E+ AL++ PTRELA+QV
Sbjct: 63 KIAKEEERIV--------------------ALVMTPTRELAIQV 86
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 28/122 (22%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
D +EE NE W +L + +L K+ L +K T I + IP L Q KD+IG
Sbjct: 9 DVEEENANEM-------TWKDLGIVDVLCKACEDLKWKSPTKIQRESIP-LTLQGKDIIG 60
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137
AET SGKT AF LP LQ LLE P+ + ALI+ PTRELA
Sbjct: 61 LAETGSGKTAAFALPILQALLEN-------------------PQRYF-ALILTPTRELAF 100
Query: 138 QV 139
Q+
Sbjct: 101 QI 102
>gi|374583452|ref|ZP_09656546.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374419534|gb|EHQ91969.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 495
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L +M+SI +GF+E+T + + IP +A + +D+IG A+T +GKT A+G+P ++
Sbjct: 4 FTDLNLSESVMRSIINMGFEETTPVQEQTIP-IAMEGRDLIGQAQTGTGKTAAYGIPLVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL+ + E H++ +++ PTRELA+QV
Sbjct: 63 RLVGQAE--------------------HIQGIVLAPTRELAVQV 86
>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 474
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 20/105 (19%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+N+L L+ ++K+I ++GF+E+T I + IP + + +D+IG A+T +GKT AFG+P +
Sbjct: 3 TFNDLGLNDGVIKAISEMGFEETTPIQRQAIPQVMNG-QDIIGQAQTGTGKTAAFGIPYI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+R+ + K ++ L++ PTRELA+QV
Sbjct: 62 ERIQDPNNK-------------------EIKGLVVTPTRELAIQV 87
>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase [Streptococcus pneumoniae CGSP14]
gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|418074418|ref|ZP_12711671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418079024|ref|ZP_12716246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418081216|ref|ZP_12718426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089950|ref|ZP_12727104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098916|ref|ZP_12736013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418105697|ref|ZP_12742753.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418115112|ref|ZP_12752098.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117270|ref|ZP_12754239.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123922|ref|ZP_12760853.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128466|ref|ZP_12765359.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418137658|ref|ZP_12774496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173983|ref|ZP_12810595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178645|ref|ZP_12815228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418182454|ref|ZP_12819015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418217036|ref|ZP_12843716.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431974|ref|ZP_13972107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419440778|ref|ZP_13980823.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465129|ref|ZP_14005020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469398|ref|ZP_14009266.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419471486|ref|ZP_14011345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419473652|ref|ZP_14013501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419497961|ref|ZP_14037668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419535050|ref|ZP_14074549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421281583|ref|ZP_15732380.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|421309995|ref|ZP_15760620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
CGSP14]
gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|353746551|gb|EHD27211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748487|gb|EHD29139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353751955|gb|EHD32586.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761141|gb|EHD41713.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353768898|gb|EHD49420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775873|gb|EHD56352.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353785196|gb|EHD65615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787951|gb|EHD68349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795742|gb|EHD76088.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798965|gb|EHD79288.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837939|gb|EHE18020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842704|gb|EHE22750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353850691|gb|EHE30695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353870309|gb|EHE50182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900613|gb|EHE76164.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|379536729|gb|EHZ01915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544202|gb|EHZ09347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379546202|gb|EHZ11341.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379550816|gb|EHZ15912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379563211|gb|EHZ28215.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577848|gb|EHZ42765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379598794|gb|EHZ63579.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629055|gb|EHZ93656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395880848|gb|EJG91899.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|395909610|gb|EJH20485.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
Length = 524
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEA-------TIQALVIAPTRELAVQ 84
>gi|158289761|ref|XP_311419.4| AGAP010702-PA [Anopheles gambiae str. PEST]
gi|157018482|gb|EAA07044.4| AGAP010702-PA [Anopheles gambiae str. PEST]
Length = 739
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V E + ++ AW +L + +++++ GFK T I +P + R+D++GAAET S
Sbjct: 196 VPEPYSTADYTAWVQLGVSEPIVRALADKGFKVPTEIQNKSLPVAIYGRRDLLGAAETGS 255
Query: 84 GKTRAFGLPALQRLL---------------EEREKAAKMLEEKGEEAEKYAPKGH----- 123
GKT AFG+P L+ ++ E ++ +E E+A+ +A +G
Sbjct: 256 GKTLAFGIPMLEGIMHLKKGKKPVADDSSEHEMTPPSEDMEVTEEDAKVFAEEGRKLGNS 315
Query: 124 --------LRALIINPTRELALQV 139
L LI+ PTRELA+Q+
Sbjct: 316 SAAPEDKPLYGLILTPTRELAVQI 339
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L +++++ + G++ + I A IP + R D++G A+T +GKT AF LP L
Sbjct: 3 FNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGR-DLMGCAQTGTGKTAAFALPMLD 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL + KG +RALI+ PTRELALQ+
Sbjct: 62 RLTASAPRK----------------KGAIRALILTPTRELALQI 89
>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
2638]
Length = 493
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + +M I+ G++ T I IP + R DV+G A+T +GKT AF LP +
Sbjct: 2 SFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGR-DVMGLAQTGTGKTAAFALPIM 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRLLE +K++ +G +R L++ PTRELALQ+
Sbjct: 61 QRLLE----------------KKFSGQGPIRVLVLAPTRELALQI 89
>gi|395334120|gb|EJF66496.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 552
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK++ ++G + T+I + IP L KDV+GAA T SGKT AF +PA++
Sbjct: 21 FSELNLSEPTMKALKEMGLETMTTIQEKSIPPLLAG-KDVLGAARTGSGKTLAFLIPAVE 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L K+ P+ +II+PTRELALQ+ VA ++ +S T
Sbjct: 80 LL----------------HRLKFKPRNGTGVIIISPTRELALQIFEVARELMQYHSQTFG 123
Query: 156 MAAG 159
+ G
Sbjct: 124 IIMG 127
>gi|403222338|dbj|BAM40470.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 470
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 21/119 (17%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
EE NEA+ + + +L + P L ++ +LG+K T I IP A Q KD+IG AE
Sbjct: 42 EETENEADDGKKGVTFEDLGVSPELCRACKQLGWKRPTKIQVEAIPV-ALQGKDIIGLAE 100
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT AF +P LQ+LLE+ ++ L +LI+ PTREL+LQ+
Sbjct: 101 TGSGKTAAFTIPILQKLLEKPQR--------------------LFSLILTPTRELSLQI 139
>gi|387896965|ref|YP_006327261.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
gi|387171075|gb|AFJ60536.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
Length = 517
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 28 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 86
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 87 KMNPE------------------SP--NIQAIVIAPTRELAIQV 110
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 23/104 (22%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L+ S+ + GF+E+T I +A IP LA KDVIG A+T +GKT AFGLP L
Sbjct: 3 FKDLELSNELLTSVERAGFEEATPIQEATIP-LALAGKDVIGQAQTGTGKTAAFGLPML- 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQ 138
EK P H L+ L+I PTRELA+Q
Sbjct: 61 --------------------EKIDPTNHQLQGLVIAPTRELAIQ 84
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++L L +L K+ +L + + + I K IP +A Q KDVIG AET SGKT AF LP LQ
Sbjct: 21 WSDLGLVDVLCKACEQLKWAQPSKIQKEAIP-VALQGKDVIGLAETGSGKTAAFALPILQ 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE P+ + ALI+ PTRELA Q+
Sbjct: 80 SLLEN-------------------PQRYF-ALILTPTRELAFQI 103
>gi|415752805|ref|ZP_11479787.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381308452|gb|EIC49295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
Length = 511
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEA-------TIQALVIAPTRELAVQ 84
>gi|119499912|ref|XP_001266713.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|143019652|sp|A1CW14.1|HAS1_NEOFI RecName: Full=ATP-dependent RNA helicase has1
gi|119414878|gb|EAW24816.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 622
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +K+I +GF T I + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 142 FTELGLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGR-DVLGAAKTGSGKTLSFLIPAVE 200
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 201 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYG 244
Query: 156 MAAG 159
+ G
Sbjct: 245 IVIG 248
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + L + LG+K T+I + IP +A Q KDVIG AET SGKT AF LP LQ
Sbjct: 90 FAELGVREELCDACISLGYKTPTAIQRESIP-IALQGKDVIGLAETGSGKTAAFALPILQ 148
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE+++ H L++ PTRELA Q+
Sbjct: 149 ALLEKQD--------------------HYFGLVLAPTRELAYQI 172
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 28/133 (21%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T F+++ L P ++ +I ++G+ E T I IP + + DV+GAA+T +GKT FG
Sbjct: 2 TSFESFG---LDPRILSAIARMGYSEPTPIQTQAIPVVL-KGGDVMGAAQTGTGKTAGFG 57
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKS 149
LP L R+L + + +P H +RALI+ PTRELA QV S
Sbjct: 58 LPLLARILPKANTS-------------MSPARHPVRALILTPTRELADQV---------S 95
Query: 150 NSLTLAMAAGSPL 162
++LT A AA +PL
Sbjct: 96 DNLT-AYAADTPL 107
>gi|308172326|ref|YP_003919031.1| DEAD/DEAH box helicase [Bacillus amyloliquefaciens DSM 7]
gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens DSM 7]
Length = 511
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 22 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 81 KMNPE------------------SP--NIQAIVIAPTRELAIQV 104
>gi|429857653|gb|ELA32507.1| ATP-dependent RNA helicase has1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 1034
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
++ E + EL L MK+I ++GF + T I + IP L KDV+GAA+T SGKT
Sbjct: 575 QVGAEAHDFAELNLSDKTMKAIGEMGFTKMTEIQRRGIPPLL-SGKDVLGAAKTGSGKTL 633
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
AF +PA++ L A ++ P+ ++++PTRELALQ+ VA +
Sbjct: 634 AFLIPAVEML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELM 677
Query: 148 KSNSLTLAMAAGSPLLTS 165
+S T + + L+ +
Sbjct: 678 AHHSQTYGIKGVNLLIAT 695
>gi|375361121|ref|YP_005129160.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567115|emb|CCF03965.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 511
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 22 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 81 KMNPE------------------SP--NIQAIVIAPTRELAIQV 104
>gi|194753466|ref|XP_001959033.1| GF12675 [Drosophila ananassae]
gi|190620331|gb|EDV35855.1| GF12675 [Drosophila ananassae]
Length = 813
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 43/167 (25%)
Query: 16 PDDAQEELVNE-AEIS----TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAH 70
P+D+ +E+V E IS + AWN L + +++++ + GF T I +PA H
Sbjct: 190 PEDSDDEIVPELVSISNGNGVDVSAWNGLGVPAPILRALGEQGFSAPTQIQALTLPAAIH 249
Query: 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK--------------MLEEKGEEAE 116
+KD++GAAET SGKT AFG+P L ++E +++ K E +E E
Sbjct: 250 GKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNVKSGIRKAPKTKGEKPAAEPADDEHE 309
Query: 117 KYAP------------------------KGHLRALIINPTRELALQV 139
P + L L++ PTRELA+QV
Sbjct: 310 LTPPPEELDHVSGASDEESDVEEHNQRMQRPLYGLVLTPTRELAVQV 356
>gi|154684961|ref|YP_001420122.1| hypothetical protein RBAM_004920 [Bacillus amyloliquefaciens FZB42]
gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
Length = 511
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 22 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 81 KMNPE------------------SP--NIQAIVIAPTRELAIQV 104
>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
HTCC2155]
gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
HTCC2155]
Length = 537
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D + L L P + + + GFKE + I + IP L Q D+IG A+T +GKT AFGLP
Sbjct: 2 DKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPI 61
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL- 152
+Q++ E G + + ALI+ PTRELA+QV K +
Sbjct: 62 VQKI------------EPGLKKPQ--------ALILCPTRELAIQVNEEIKSFCKGRGIT 101
Query: 153 TLAMAAGSPLL 163
T+ + G+P++
Sbjct: 102 TVTLYGGAPIM 112
>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
Length = 442
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P L+K++ K G+ T+I + IPA A + +DV+G+A T +GKT AF LPA+Q
Sbjct: 6 FDDFDLDPALLKALAKKGYTRPTAIQQETIPA-AMEERDVLGSAPTGTGKTAAFLLPAIQ 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ + G R L++ PTRELA+QV A +L++A
Sbjct: 65 HLLDYPRRKP----------------GAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIA 108
Query: 156 MAAG 159
G
Sbjct: 109 TITG 112
>gi|385263594|ref|ZP_10041681.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385148090|gb|EIF12027.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 517
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMKSI ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 28 FQDFQLSSDLMKSINRMGFEEATPIQAQTIP-LGLLNKDVIGQAQTGTGKTAAFGIPLVE 86
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 87 KMNPE------------------SP--NIQAIVIAPTRELAIQV 110
>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
Length = 498
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 20/105 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L+LHP L + + +LGF T I IP A + +DV+ A T SGKT AF LP L
Sbjct: 5 FSSLQLHPSLQQGLKELGFARPTPIQGEAIPP-ALEGRDVLACAMTGSGKTYAFLLPILH 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+L+ + P+G+ RAL++ PTRELA Q+L
Sbjct: 64 QLMSK-------------------PRGNTRALVLTPTRELAAQIL 89
>gi|401412566|ref|XP_003885730.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
gi|325120150|emb|CBZ55704.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
Length = 969
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARI-PALAHQRKDVIGAAETESGKTRAFGLPA 93
AW +L L L+++I L + T I A + PAL + +D++ A+T SGKT AF LP
Sbjct: 232 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPAL--EGRDLLANAQTGSGKTAAFLLPT 289
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR---ALIINPTRELALQVLMVASPSLKSN 150
L+RLL + + G P G LR AL++ PTRELA+Q + + K
Sbjct: 290 LERLLHSPGVRTRKMTPNG-------PAGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT 342
Query: 151 SLTLAMAAGSPLLTS-EHSNRRKPN 174
+T A+A G L + E++ R++P+
Sbjct: 343 PVTHALACGGMTLKAHENALRQQPD 367
>gi|396462816|ref|XP_003836019.1| hypothetical protein LEMA_P053600.1 [Leptosphaeria maculans JN3]
gi|312212571|emb|CBX92654.1| hypothetical protein LEMA_P053600.1 [Leptosphaeria maculans JN3]
Length = 1194
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W ++ L M ++ ++ TSI IP +A +D+IG A+T SGKT AFG+P ++
Sbjct: 541 WAQMGLLQATMDVFTRVRYERPTSIQAQAIP-IAESGRDLIGVAKTGSGKTLAFGIPMIR 599
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L++R KG + P G LI+ PTREL+LQ++ P L ++++T+
Sbjct: 600 HILDQRPL-------KGSD----GPIG----LILAPTRELSLQIVSELKPFLSASNITIK 644
Query: 156 MAAG 159
A G
Sbjct: 645 CAYG 648
>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
gi|167664425|gb|EDS08555.1| DEAD/DEAH box helicase [Clostridium scindens ATCC 35704]
Length = 526
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P +MK++ +GF+E++ I IPA+ + KD+IG A+T +GKT AFG+P L
Sbjct: 6 FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAML-EGKDIIGQAQTGTGKTAAFGIPLL- 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV 139
EK PK L+A+++ PTRELA+QV
Sbjct: 64 --------------------EKIDPKNKKLQAIVLCPTRELAIQV 88
>gi|327348577|gb|EGE77434.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ATCC
18188]
Length = 772
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E L + E + AW L + + S+ KL F + T I A IPA+A DV+G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIAAGH-DVVGKAS 233
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT AFG+P L+ LE R + E A K ALI++PTRELA Q+
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDPESAGKDPI-----ALILSPTRELAHQL 287
>gi|409080625|gb|EKM80985.1| hypothetical protein AGABI1DRAFT_127033 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 926
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ G++ T I ++ IP+L A+ +D++G A T SGK+ A+ +P
Sbjct: 99 SFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVGMARTGSGKSLAYMIPL 158
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
+QRL G + + RALI+ PTRELALQ+L V + + T
Sbjct: 159 VQRL-------------GGRHSTTFGA----RALILLPTRELALQILKVGKELSRGWNST 201
Query: 154 LAMAAGSPLLTSEHSNRRKPNKRKRTRKGGE--DEKLDSLKWNPLSQPKTTTLLPSSLAL 211
AG E N N R GGE DE+ + + NP T L +
Sbjct: 202 SGDHAGD----KEGQNSNSQNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVE 257
Query: 212 MNL 214
MNL
Sbjct: 258 MNL 260
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 530
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+P +++ I +GF+E+T I IPA+ R DVIG A+T +GKT AFG+P L+
Sbjct: 6 FDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGR-DVIGQAQTGTGKTAAFGIPVLE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ K + +I++PTRELA+QV
Sbjct: 65 SVDASSHKT--------------------QVIILSPTRELAIQV 88
>gi|126324314|ref|XP_001375375.1| PREDICTED: ATP-dependent RNA helicase DDX55 [Monodelphis domestica]
Length = 599
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
AW L LHP ++ ++ +LGF T + A IP L + KDV A T SGKT AF +P
Sbjct: 8 AWETLPVPLHPRVLAALRELGFPYMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQ LL+ EK KM + A+II PTRELA+Q+
Sbjct: 67 ILQILLKREEKLKKM---------------QVGAIIITPTRELAIQI 98
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L L+K+I K GF + I + IP + Q KDV+ AA+T +GKT FGLP L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVL-QGKDVLAAAQTGTGKTAGFGLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+E + + ++RALI+ PTRELA QV
Sbjct: 61 QRLMEGQPVSGN----------------NVRALILTPTRELAAQV 89
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSTELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 278 TKQLAQFCSITTCLAVG 294
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L ++K++ + G+ T I + IP L Q++D+IG A+T +GKT AF LP LQ
Sbjct: 3 FKELNLTAPILKAVDRQGYTTPTPIQQKAIPILL-QKRDLIGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ER K ++ALI+ PTRELA+Q+
Sbjct: 62 NLASERRKG-------------------IKALILTPTRELAIQI 86
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|253741415|gb|EES98285.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 767
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
N D +E+ + A + D W L LHP+L K + + G+ + +I I A H +
Sbjct: 85 NYKQDFVDEICSLAGVEG-IDEWVRLGLHPVLCKYLVRAGYTKPRAIQVQTIRAALHDKS 143
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
VI AAET SGKT A+ LPAL + A K + E+A++ A L+ LII PTR
Sbjct: 144 LVI-AAETGSGKTLAYLLPALHKAFTLVTNALK----RPEQAQRRA----LQTLIIAPTR 194
Query: 134 ELALQV 139
ELA Q+
Sbjct: 195 ELATQI 200
>gi|406577293|ref|ZP_11052907.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404460138|gb|EKA06419.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P MKSI K+GF+E+T I IP L+ + KD+IG A+T +GKT AFG+P ++
Sbjct: 4 FQDLGLSPATMKSIRKMGFEEATPIQAQTIP-LSLENKDLIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +++ ++ +++ PTRELA+QV
Sbjct: 63 KIDIDQDV--------------------IQGIVVAPTRELAIQV 86
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase [Methanosphaerula palustris E1-9c]
gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
E1-9c]
Length = 550
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 21/106 (19%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+A+ L + + ++I LGF+E T I + IP L HQ DVIG A+T +GKT AFG+P
Sbjct: 27 NAFEALGISKEIQRAIVDLGFEEPTPIQQMAIP-LIHQGFDVIGQAQTGTGKTAAFGIPT 85
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L EK + +K H++ALI++PTREL +Q+
Sbjct: 86 L---------------EKIDPLDK-----HVQALILSPTRELTIQI 111
>gi|336171342|ref|YP_004578480.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725914|gb|AEH00052.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 411
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L+L+ L+++I + G+ T I + IP L +KDVI +A+T +GKT AF LP L
Sbjct: 2 SFKDLKLNRPLLRAIAEKGYDNPTLIQERTIP-LVLNKKDVIASAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q LL +++ AAK + +RALII+PTRELA+Q+
Sbjct: 61 Q-LLYDKQDAAK-------------NQKKVRALIISPTRELAIQI 91
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I + GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIERAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 25/149 (16%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAGSPLLTSEHSNRR 171
+ ++T +A G L S+ + R
Sbjct: 278 TRQLAQFCNITTCLAVGGLDLKSQEAALR 306
>gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 553
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 21/129 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L P L+++ LGF E + + IP L+ R D+I ++T SGKT A+GLP L+
Sbjct: 3 FDTLDLSPELLRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPLLE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL--MVASPSLKSNSLT 153
R++ +A+ AP G LI+ PTRELA+QV +VA S
Sbjct: 63 RII---------------QAKGSAPCG----LILTPTRELAIQVQSDLVALAKYTSVRQI 103
Query: 154 LAMAAGSPL 162
LA+ G+ +
Sbjct: 104 LALYGGASI 112
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 278 TKQLAQFCSITTCLAVG 294
>gi|358464311|ref|ZP_09174276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067077|gb|EHI77207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 524
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L L+K+I K GF + I + IP + Q KDV+ AA+T +GKT FGLP L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVL-QGKDVLAAAQTGTGKTAGFGLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+E + + ++RALI+ PTRELA QV
Sbjct: 61 QRLMEGQPVSGN----------------NVRALILTPTRELAAQV 89
>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea blandensis MED297]
gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
Length = 448
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 18/105 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ LHP L +I + G+ E T + A IP A KD++ +AET SGKT A+ LPAL
Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQ-ALDGKDLLISAETGSGKTAAYLLPALH 60
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
R+L ER+ PK +R L++ PTRELA QV+
Sbjct: 61 RVLSERK-----------------PKAGIRVLVMVPTRELAQQVM 88
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|212541586|ref|XP_002150948.1| ATP-dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
gi|210068247|gb|EEA22339.1| ATP-dependent RNA helicase, putative [Talaromyces marneffei ATCC
18224]
Length = 584
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +++I ++GF+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 107 FTELNLSERTLEAIKEMGFETMTEIQQRAIPPLMAGR-DVLGAAKTGSGKTLAFLIPAIE 165
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + K+ P+ LI++PTRELALQ+ VA L +S T
Sbjct: 166 LL----------------HSLKFKPRNGTGVLILSPTRELALQIWGVARQLLDKHSQTHG 209
Query: 156 MAAG 159
+ G
Sbjct: 210 IVMG 213
>gi|403070967|ref|ZP_10912299.1| ATP-dependent RNA helicase [Oceanobacillus sp. Ndiop]
Length = 492
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 22/128 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL + +MK++ K+GF+E+T I IP LA + DVIG A+T +GKT AFG+P +
Sbjct: 4 FNELSVSAPIMKALEKMGFEEATPIQSETIP-LAMEGNDVIGQAQTGTGKTAAFGIPMIN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TL 154
++ + K ++ L++ PTRELA+QV + K + L
Sbjct: 63 KIDPKLRK--------------------IQGLVVAPTRELAIQVAEELNRLAKFTGMRAL 102
Query: 155 AMAAGSPL 162
++ GSP+
Sbjct: 103 SIYGGSPM 110
>gi|294141997|ref|YP_003557975.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 430
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 22/129 (17%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
FDA L L+PLL+++I + G+++ T + IP LA D++ AET +GKT +F LP
Sbjct: 3 FDA---LDLNPLLLQAIDECGYQQLTQVQSEVIP-LALSGVDLMACAETGTGKTASFALP 58
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL 152
L+RLL+E ++ LR LI+ PTRELA+QV + + SL
Sbjct: 59 LLERLLKEDHESP-----------------CLRGLILTPTRELAIQVAENITRYGQFTSL 101
Query: 153 -TLAMAAGS 160
TLA+ G+
Sbjct: 102 KTLAVYGGA 110
>gi|346325432|gb|EGX95029.1| DEAD/DEAH box RNA helicase, putative [Cordyceps militaris CM01]
Length = 660
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 16/114 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++ LHP+++ ++ G+ T I K IPA+ Q +DVIG A+T SGKT A+ +P L
Sbjct: 93 SFDDAGLHPVMLDNVKLAGYDHPTPIQKYTIPAIV-QGRDVIGIAQTGSGKTAAYLIPIL 151
Query: 95 QRLL-------EEREKAAKMLEEKGE-EAEKYAPKGHLRALIINPTRELALQVL 140
RL+ R A E + E AE L+I+PTRELA+Q+
Sbjct: 152 SRLMGKVKKLAAPRPNPATFCEGRDEVTAEPL-------VLVISPTRELAVQIF 198
>gi|417933911|ref|ZP_12577231.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340770481|gb|EGR92996.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 525
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
+E+ E ++ + L ++K++ LGF + T I A IP +A KDV+G A T SG
Sbjct: 170 SESGAPAEHSSFLTMNLSRPILKALTTLGFTKPTPIQAATIP-VALLGKDVVGNAVTGSG 228
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF +P L+RLL EKG++A R L++ PTRELA+Q V
Sbjct: 229 KTAAFTIPMLERLL---------YREKGKKA------AATRCLVLVPTRELAVQCYEVGK 273
Query: 145 PSLKSNSLTLAMAAGSPLLTSEHSN-RRKPN 174
+ +A+ G L S+ + R +P+
Sbjct: 274 KLAAHTDIEVALIVGGLSLKSQEATLRARPD 304
>gi|406596808|ref|YP_006747938.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406598056|ref|YP_006749186.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406374129|gb|AFS37384.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406375377|gb|AFS38632.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
Length = 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L L+K+I K GF + I + IP + Q KDV+ AA+T +GKT FGLP L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVL-QGKDVLAAAQTGTGKTAGFGLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+E + + ++RALI+ PTRELA QV
Sbjct: 61 QRLMEGQPVSGN----------------NVRALILTPTRELAAQV 89
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
Length = 520
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|261205266|ref|XP_002627370.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
gi|239592429|gb|EEQ75010.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis SLH14081]
Length = 772
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E L + E + AW L + + S+ KL F + T I A IPA+A DV+G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIAAGH-DVVGKAS 233
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT AFG+P L+ LE R + E A K ALI++PTRELA Q+
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDRESAGKDPI-----ALILSPTRELAHQL 287
>gi|418134760|ref|ZP_12771617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353901997|gb|EHE77527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 430
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEAT-------IQALVIAPTRELAVQ 84
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L L++++ +GF E T I IP +A KDV+G A T SGKT AF +P L
Sbjct: 233 SFLDLPLSRPLLRALTSVGFDEPTPIQAKTIP-IALMGKDVVGGAVTGSGKTAAFMVPIL 291
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+RLL K R +I+ PTRELA+Q VA+ + +
Sbjct: 292 ERLLHRPNKVPTT-----------------RVVILTPTRELAMQCHAVATKLARFTDIKF 334
Query: 155 AMAAG 159
+AAG
Sbjct: 335 CLAAG 339
>gi|71029534|ref|XP_764410.1| DEAD box RNA helicase [Theileria parva strain Muguga]
gi|68351364|gb|EAN32127.1| DEAD box RNA helicase, putative [Theileria parva]
Length = 543
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ L ++++I ++G++ T I+++++ LA + KD++ AET SGKT +F +P LQ
Sbjct: 77 WSDFGLCRSILRAISEMGYQNPT-IIQSKVIPLALEGKDLLVTAETGSGKTASFLIPTLQ 135
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ---VLMVASPSLKSNSL 152
RL+ + +L++ E + + +AL+I PTRELA Q V + S L S S+
Sbjct: 136 RLV-----VSGVLKQLTNEKQVQNSRFGTKALVILPTRELAAQCFNVFKLLSKYLSSKSI 190
Query: 153 TLAMAAGSPLLTSEHSNRRKP 173
L G P+ E R+ P
Sbjct: 191 LL--TGGIPIKEQESRLRQFP 209
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 23/143 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +++L +++ + L F++ T I IP +A KD++GAA T SGKT AF +P L
Sbjct: 232 SFQDMKLSRPILRGLSSLNFEDPTPIQSKTIP-VALLGKDIVGAAVTGSGKTAAFVVPIL 290
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RL+ Y PK R LII PTRELA+Q VA +
Sbjct: 291 ERLV-------------------YRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDI 331
Query: 153 TLAMAAGS-PLLTSEHSNRRKPN 174
TL + G L E R++P+
Sbjct: 332 TLCLCVGGLSLKVQEQELRKRPD 354
>gi|167375453|ref|XP_001733648.1| ATP-dependent rRNA helicase rrp3 [Entamoeba dispar SAW760]
gi|165905151|gb|EDR30227.1| ATP-dependent rRNA helicase rrp3, putative [Entamoeba dispar
SAW760]
Length = 300
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 24/124 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P ++K + LG+K+ T I + IP A Q+KD+IG A+T SGKT +F LP +Q
Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTKIQENSIPV-ALQKKDIIGIAQTGSGKTASFLLPMIQ 69
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV------ASPSLKS 149
LL +EK +II PTRELA QV+ V A P L S
Sbjct: 70 HLLNVKEK-----------------NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMS 112
Query: 150 NSLT 153
L
Sbjct: 113 CLLV 116
>gi|392571723|gb|EIW64895.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 561
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L M+++ ++GFK T+I + IP L KDV+GAA T SGKT AF +PA++
Sbjct: 25 FSDLELSEHTMRALEEMGFKTMTAIQEKAIPPLL-AGKDVLGAARTGSGKTLAFLIPAIE 83
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L K+ P+ +II+PTRELALQ+ VA + +S T
Sbjct: 84 LL----------------HRLKFKPRNGTGIIIISPTRELALQIFGVAKELMVHHSQTYG 127
Query: 156 MAAG 159
+ G
Sbjct: 128 IIMG 131
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 579
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL+L P ++K++ + G+ T I IPA+ D++G A+T +GKT AF LP LQ
Sbjct: 3 FEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVL-AGSDLLGGAQTGTGKTAAFTLPMLQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E ++ +G A +RALI+ PTRELA QV
Sbjct: 62 RLSTE----PRLTNRRGVNA--------VRALIMTPTRELAAQV 93
>gi|385825223|ref|YP_005861565.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
Length = 479
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 21/100 (21%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
+ L P ++K+I + GF+E+T I + IP L + KDVIG A+T +GKT AFGLP LQ L
Sbjct: 1 MNLKPEILKAIKRSGFEEATPIQEKTIP-LVLEEKDVIGQAQTGTGKTAAFGLPILQNLD 59
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + ++A+II PTRELA+Q
Sbjct: 60 KQHDS--------------------IQAIIIEPTRELAIQ 79
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 148 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 206
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 207 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 247
Query: 143 ASPSLKSNSLTLAMAAG 159
+ S+T +A G
Sbjct: 248 TKQLAQFCSITTCLAVG 264
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L L+ ++ K G+ E TSI IP + R D++G A+T +GKT +F LP L
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGR-DLMGGAQTGTGKTASFTLPVL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+E + K G +RAL++ PTRELA QV
Sbjct: 61 QRLMESGDAKPK--------------AGKVRALVLTPTRELAAQV 91
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KMNPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|392593758|gb|EIW83083.1| ATP-dependent RNA helicase DBP10 [Coniophora puteana RWD-64-598
SS2]
Length = 845
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 18/103 (17%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPALQRLLE 99
LHP L++S+ G++ T I ++ IP+L A +D++G A T SGKT A+ +P +QRL
Sbjct: 3 LHPSLLRSLTLQGYRIPTPIQRSSIPSLLASPPRDLVGMARTGSGKTLAYMIPLVQRL-- 60
Query: 100 EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
G + + RALI+ PTRELALQVL V
Sbjct: 61 -----------GGRHSTTFGA----RALILTPTRELALQVLRV 88
>gi|365985163|ref|XP_003669414.1| hypothetical protein NDAI_0C05120 [Naumovozyma dairenensis CBS 421]
gi|343768182|emb|CCD24171.1| hypothetical protein NDAI_0C05120 [Naumovozyma dairenensis CBS 421]
Length = 628
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 21/130 (16%)
Query: 36 WNELRLHPLLMKSIY--KLGFKESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLP 92
W+EL+L P ++ I KL FK+ T I + IP + Q +D IG A T SGKT AF LP
Sbjct: 206 WDELKLLPPILDDILINKLNFKDPTPIQRITIPNILLQNDRDFIGVASTGSGKTLAFILP 265
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ-------VLMVASP 145
L +LLE +K + + G +LI+ PTRELA Q ++ P
Sbjct: 266 ILIKLLETGDKPINLKKIDGP-----------MSLILVPTRELAQQIQSEADKIISFLRP 314
Query: 146 SLKSNSLTLA 155
S N+ ++
Sbjct: 315 SYNFNTCSIV 324
>gi|149237833|ref|XP_001524793.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|152112298|sp|A5E2I8.1|SPB4_LODEL RecName: Full=ATP-dependent rRNA helicase SPB4
gi|146451390|gb|EDK45646.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 637
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 36 WNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W LR L P L +I L + T + + IP L+ KDVI A T SGKT AF +P
Sbjct: 10 WENLRVDLEPWLKDAIRSLNYPTMTPVQASTIPLLSGN-KDVIVEAVTGSGKTLAFAIPV 68
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAP--KGHLRALIINPTRELALQVLMVASPSL 147
LQ K +K L + E EK P +GH+ A+++ PTRELA Q+ MV L
Sbjct: 69 LQ-------KVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVL 117
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 60/119 (50%), Gaps = 24/119 (20%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
EE V EI T F EL + +L ++ +LG+K+ T I IP +A Q +DVIG AE
Sbjct: 69 EETVTTGEIHTSF---KELGVTEVLCEACDQLGWKKPTKIQIEAIP-VALQGRDVIGLAE 124
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT AF +P LQ LL A L L++ PTRELA Q+
Sbjct: 125 TGSGKTGAFAVPVLQSLL--------------------ACAQRLHTLVLTPTRELAFQI 163
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
Length = 421
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L P L+ ++ LG T I + IP + Q KDV+ A+T +GKT AFGLP +Q
Sbjct: 8 FSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
R +E+ + EE +E +RAL++ PTRELA QVL K L +
Sbjct: 67 RFIEQ----PWVREENSKE---------IRALVLVPTRELAQQVLDSMQAYAKGTELKIV 113
Query: 156 MAAG 159
G
Sbjct: 114 AVYG 117
>gi|332028699|gb|EGI68731.1| ATP-dependent RNA helicase DDX24 [Acromyrmex echinatior]
Length = 743
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 27/160 (16%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
N A+I+ E AW + + ++K++ F T I +PA R+D++GAAET SG
Sbjct: 136 NLAKINAE--AWRSMGVPTAVIKALADQNFHSPTMIQTQTLPAAILGRRDILGAAETGSG 193
Query: 85 KTRAFGLPALQRLLE-------------------------EREKAAKMLEEKGEEAEKYA 119
KT AFG+P ++ +L+ E + ++ +K +
Sbjct: 194 KTLAFGIPIIKGILDLKNQNKDQNSEKDTEESDSENIVLSEFDNCVNIVNDKKLDDCHNI 253
Query: 120 PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P L ALI+ PTRELA+Q+ + + K + +A+ G
Sbjct: 254 PTKPLYALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLG 293
>gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
uenonis 60-3]
gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
uenonis 60-3]
Length = 553
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 21/129 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L P L+++ LGF E + + IP L+ R D+I ++T SGKT A+GLP L+
Sbjct: 3 FDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPLLE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL--MVASPSLKSNSLT 153
R++ +A+ AP G LI+ PTRELA+QV +VA S
Sbjct: 63 RII---------------QAKGSAPCG----LILTPTRELAIQVQSDLVALAKYTSVRQI 103
Query: 154 LAMAAGSPL 162
LA+ G+ +
Sbjct: 104 LALYGGASI 112
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 24/112 (21%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E T F A L + P L+++ ++GFK T I + IP +A +D+IG AET SGKT
Sbjct: 143 EAPTTFQA---LGIVPSLVEACSRMGFKAPTPIQRQSIP-VALTGRDIIGLAETGSGKTA 198
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+F LP LQ+LLE+ + L ALI+ PTRELA Q+
Sbjct: 199 SFALPVLQKLLEKPQP--------------------LFALILTPTRELAYQI 230
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K++ + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL + +A +P H +RALI+ PTRELA QV K +L
Sbjct: 72 RLLPQASTSA-------------SPARHPVRALILTPTRELADQVAANVQAYAKHTALRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L LMK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FHELGLSNELMKAIRRMGFEETTPIQAETIP-LSLQNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + E ++ L++ PTRELA+QV
Sbjct: 63 KVDVKNEA--------------------IQGLVVAPTRELAIQV 86
>gi|440299556|gb|ELP92108.1| ATP-dependent rRNA helicase rrp3, putative [Entamoeba invadens IP1]
Length = 433
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 63/127 (49%), Gaps = 24/127 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E+ L P ++K + LG+K T I + IP +A +RKD+IG A+T SGKT AF LP L
Sbjct: 15 FQEIGLLPEVIKVVEHLGYKMPTPIQSSSIP-VALKRKDIIGIAQTGSGKTAAFLLPMLN 73
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV------ASPSLKS 149
LL E+ K +++ PTRELA QV+ V A P L S
Sbjct: 74 HLLNTNER-----------------KRDFFCIVVEPTRELAAQVIEVLDRMAEALPGLVS 116
Query: 150 NSLTLAM 156
L M
Sbjct: 117 CLLVGGM 123
>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405, partial [Trichoplax
adhaerens]
Length = 463
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 23/143 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ ++ L L+K+I LGF+ T I + IP +A KD+ A T +GKT AF LP L
Sbjct: 18 SFRDINLSRPLLKAISTLGFEHPTPIQSSTIP-IALLGKDICACAATGTGKTAAFMLPIL 76
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELALQVLMVASPSLKSNSL 152
+RL+ Y PK R L++ PTRELA+QV V + +
Sbjct: 77 ERLI-------------------YRPKRIPVTRVLVLVPTRELAIQVFSVGKSLCQYTDI 117
Query: 153 TLAMAAGS-PLLTSEHSNRRKPN 174
+AAG + + E + RR P+
Sbjct: 118 EFCLAAGGLDIASQEAALRRNPD 140
>gi|417940539|ref|ZP_12583827.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
gi|343389420|gb|EGV02005.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
Length = 518
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|239611412|gb|EEQ88399.1| ATP-dependent RNA helicase MAK5 [Ajellomyces dermatitidis ER-3]
Length = 772
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E L + E + AW L + + S+ KL F + T I A IPA+A DV+G A
Sbjct: 175 EALNEDDEEEVDVSAWGPLDISAEIQTSLSKLKFAKPTPIQSACIPAIAAGH-DVVGKAS 233
Query: 81 TESGKTRAFGLPALQRLLEERE----KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
T SGKT AFG+P L+ LE R + K LE G++ ALI++PTRELA
Sbjct: 234 TGSGKTLAFGIPILEYYLETRHDEPSQQHKDLESVGKDP---------IALILSPTRELA 284
Query: 137 LQV 139
Q+
Sbjct: 285 HQL 287
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L +HP ++ + Y+ GFK+ I + IP A + +D+IG A+T SGKT AF +P LQ
Sbjct: 12 FESLGVHPQIIDACYRSGFKKPKEIQRETIP-WALKGRDIIGLAQTGSGKTGAFVIPVLQ 70
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+LLE+ P+G + L I PTRELA Q+
Sbjct: 71 KLLEQ-------------------PQG-IFCLCIAPTRELAFQI 94
>gi|302679352|ref|XP_003029358.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
gi|300103048|gb|EFI94455.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
Length = 924
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ GF+ T I + IPAL A+ +D++G A T SGKT + +P
Sbjct: 96 SFQSMGLHPSLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKTLGYMIPL 155
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
+QRL G + + RALI+ PTRELALQ+L V
Sbjct: 156 VQRL-------------GGRHSTTFGA----RALILIPTRELALQILRVG 188
>gi|255576631|ref|XP_002529205.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223531323|gb|EEF33161.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 590
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
D++ L L K+I ++GF+ T I IP L KDV+GAA T SGKT AF +PA
Sbjct: 104 DSFESLGLSEPTRKAIQEMGFQYLTQIQARAIPPLL-VGKDVLGAARTGSGKTLAFLIPA 162
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
++ L +AP+ ++I PTRELA+Q VA LK +S T
Sbjct: 163 VELLYNVH----------------FAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQT 206
Query: 154 LAMAAG 159
L + G
Sbjct: 207 LGLVIG 212
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L L +++ ++G++ T I + IP + Q KDV+GAA+T +GKT AF LP L
Sbjct: 4 SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVL-QGKDVMGAAQTGTGKTAAFALPLL 62
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QR++ K E A + +RAL++ PTRELA+QV
Sbjct: 63 QRMM------------KHENASTSPARHPVRALVLLPTRELAVQV 95
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E LHP +M + G+ T I IP + R DV+G A+T +GKT AF LP L
Sbjct: 3 FKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGR-DVMGLAQTGTGKTAAFALPILH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL +GE +G +RAL+I PTRELA Q+
Sbjct: 62 RL------------AQGE-------RGRVRALVIAPTRELAEQI 86
>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
Length = 535
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T + E LH LLM ++ K G+ + T I K +PA+ ++D++ A+T SGKT AF
Sbjct: 102 TPLATFEEADLHELLMTNVKKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFL 161
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAP-KGHLRALIINPTRELALQVL 140
LP + LL+ K ++AP KG+ +A+I+ PTREL Q+
Sbjct: 162 LPIINALLKSGIHKDK---------RRFAPNKGNPKAVILAPTRELCQQIY 203
>gi|223590189|sp|A5DLR3.2|DBP10_PICGU RecName: Full=ATP-dependent RNA helicase DBP10
gi|190347777|gb|EDK40116.2| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
L L+K+I K GFK+ T I + IP L + +DV+G A T SGKT AF LP +++L
Sbjct: 106 LSKFLLKNIAKKGFKQPTPIQRKTIP-LVMESRDVVGMARTGSGKTAAFVLPVVEKL--- 161
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS 160
+ ++PK +RA+I++P+RELALQ K L + G
Sbjct: 162 ---------------KSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGG 206
Query: 161 PLLTSEHSN 169
L + S+
Sbjct: 207 DSLEDQFSS 215
>gi|398309564|ref|ZP_10513038.1| DEAD/DEAH box helicase [Bacillus mojavensis RO-H-1]
Length = 494
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + +L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFQLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|380022105|ref|XP_003694894.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
CshA-like [Apis florea]
Length = 781
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L+ L+K+I + GF+E+T I + IP LA KDVIG A+T +GKT AF LP LQ
Sbjct: 367 FSELGLNDELLKAIKRSGFEEATPIQEQTIP-LALAGKDVIGQAQTGTGKTAAFALPILQ 425
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L +K K+++ ALII PTRELA+Q
Sbjct: 426 NL----DKHNKVIQ----------------ALIIEPTRELAIQ 448
>gi|169607499|ref|XP_001797169.1| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
gi|182676401|sp|Q0UN57.2|PRP5_PHANO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
gi|160701425|gb|EAT85458.2| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
Length = 1184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W ++ L M ++G+ T+I IP +A +D+IG A+T SGKT AFG+P ++
Sbjct: 546 WAQMGLLQQTMDVFTRVGYARPTAIQAQAIP-IAESGRDLIGVAKTGSGKTLAFGIPMIR 604
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L++R P LI+ PTREL+LQ++ P L ++ +T+
Sbjct: 605 HVLDQR---------------PLKPADGPIGLILAPTRELSLQIVNELKPFLNASGITIK 649
Query: 156 MAAG 159
A G
Sbjct: 650 CAYG 653
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + ++AL+I PTRELA+Q
Sbjct: 62 KI--------------------HTEDATIQALVIAPTRELAVQ 84
>gi|444317493|ref|XP_004179404.1| hypothetical protein TBLA_0C00690 [Tetrapisispora blattae CBS 6284]
gi|387512445|emb|CCH59885.1| hypothetical protein TBLA_0C00690 [Tetrapisispora blattae CBS 6284]
Length = 604
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 31 TEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
TE WN L+ L P + +I +GF+ T + + IP LA KDV+ + T SGKT A
Sbjct: 2 TESLLWNNLKYELQPWIRTAIDVMGFERMTPVQASTIPMLAGN-KDVVVDSVTGSGKTIA 60
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
F +P L++++ E+ K KGH LII PTREL+ Q+ V L
Sbjct: 61 FVIPVLEKIISEQANNVKF------------KKGHFHTLIIAPTRELSKQIQAVIDSFL 107
>gi|347841781|emb|CCD56353.1| similar to pre-mRNA-processing ATP-dependent RNA helicase PRP5
[Botryotinia fuckeliana]
Length = 1179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ L + I KLG++ TSI IPA+ R DVIG A+T SGKT AF LP +
Sbjct: 556 WSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGR-DVIGVAKTGSGKTIAFLLPMFR 614
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ ++R KG + P G LI+ PTRELA Q+ P LK+ L
Sbjct: 615 HIRDQRPL-------KGSD----GPIG----LIMTPTRELATQIHKECKPFLKAMGLRAV 659
Query: 156 MAAGSPLLTSEHSNRRK 172
A G ++ + ++ ++
Sbjct: 660 CAYGGAIIKDQIADLKR 676
>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
gi|160419161|sp|A6RW79.1|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
Length = 1151
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ L + I KLG++ TSI IPA+ R DVIG A+T SGKT AF LP +
Sbjct: 556 WSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGR-DVIGVAKTGSGKTIAFLLPMFR 614
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ ++R KG + P G LI+ PTRELA Q+ P LK+ L
Sbjct: 615 HIRDQRPL-------KGSD----GPIG----LIMTPTRELATQIHKECKPFLKAMGLRAV 659
Query: 156 MAAGSPLLTSEHSNRRK 172
A G ++ + ++ ++
Sbjct: 660 CAYGGAIIKDQIADLKR 676
>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
Length = 592
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 22/141 (15%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
E+ +E+ + ++++E+ L LMK+I + F T I A IP +A +DV G A
Sbjct: 3 EDFFDESLLYEPAESFHEMNLSRPLMKAIASMNFVHPTPIQSATIP-VALLGRDVCGCAA 61
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELALQ 138
T +GKT AF LP L+RL+ Y PK R L++ PTREL +Q
Sbjct: 62 TGTGKTAAFMLPVLERLM-------------------YRPKVSATTRVLVLVPTRELGVQ 102
Query: 139 VLMVASPSLKSNSLTLAMAAG 159
V V+ + ++ + ++ G
Sbjct: 103 VYQVSKQLSQFTNIQIGLSIG 123
>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 782
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 20/124 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W + L L K I K GF++ T I + IP + KD++ + T SGKT AF +P LQ
Sbjct: 33 WQTIGLDHTLFKGIQKKGFRQPTPIQRKAIPIII-DGKDIVAMSRTGSGKTAAFVIPILQ 91
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L K+ + KG +RALII PTRELA+Q V + L A
Sbjct: 92 KL--------KVRDMKG-----------IRALIIEPTRELAMQTFTVVKELGRFTGLRCA 132
Query: 156 MAAG 159
+ G
Sbjct: 133 VLVG 136
>gi|375145001|ref|YP_005007442.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361059047|gb|AEV98038.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 419
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 14/95 (14%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
+++++ G+ T I + IP L QRKD+ G A T +GKT AF +P LQ +L E+++A
Sbjct: 12 ILRALNNEGYTTPTPIQEQAIP-LVLQRKDLFGCARTGTGKTAAFAIPVLQ-ILHEQKQA 69
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AK AP ++ALI+ PTRELA+Q+
Sbjct: 70 AK------------APDNTIKALILTPTRELAIQI 92
>gi|354807813|ref|ZP_09041268.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
gi|354513709|gb|EHE85701.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
Length = 523
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FAELGLSEPIMKAIERAGFEEATPIQGETIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L + +++ALII+PTRELA+Q
Sbjct: 62 NLDLDNP--------------------NIQALIISPTRELAIQ 84
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L + P+++K++ K +KE T I IPA+ R D++G A+T +GKT AF +P +Q
Sbjct: 19 FQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGR-DLLGCAQTGTGKTAAFSVPMIQ 77
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L E+ K +RAL+++PTRELALQ+
Sbjct: 78 LL--------------NEQPPKPGMARRIRALVLSPTRELALQI 107
>gi|330934418|ref|XP_003304540.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
gi|311318781|gb|EFQ87363.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
Length = 1166
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
VN ++ W ++ L M ++ +++ T+I IP +A +D+IG A+T S
Sbjct: 514 VNPDDVPRPVTKWAQMGLLQATMDVFTQVRYEKPTAIQSQAIP-IAESGRDLIGVAKTGS 572
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AFG+P ++ +L++R P LI+ PTREL+LQ++
Sbjct: 573 GKTLAFGIPMIRHILDQR---------------PLKPSDGPIGLILAPTRELSLQIVHEL 617
Query: 144 SPSLKSNSLTLAMAAG 159
P L ++ +T+ A G
Sbjct: 618 KPFLAASGITIKCAYG 633
>gi|170086121|ref|XP_001874284.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651836|gb|EDR16076.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 517
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L P ++ + +GF TS+ + IP L KD++GAA T SGKT AF +PA++
Sbjct: 3 FSDLGLSPQTLQGLSDMGFSTMTSVQQKSIPVLLAG-KDLLGAARTGSGKTLAFLIPAVE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L K+ P +II PTRELALQ+ VA + +S T
Sbjct: 62 LL----------------HRLKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTFG 105
Query: 156 MAAG 159
+ G
Sbjct: 106 IVIG 109
>gi|356513888|ref|XP_003525640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine
max]
Length = 572
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 64/131 (48%), Gaps = 19/131 (14%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+STE ++ L L K+I +GF T I IP L KDV+GAA T SGKT A
Sbjct: 84 MSTE--SFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLL-IGKDVLGAARTGSGKTLA 140
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PAL+ L K+ P+ ++I PTRELA+Q VA LK
Sbjct: 141 FLIPALELLYNV----------------KFTPRNGAGVIVICPTRELAIQTHAVAKELLK 184
Query: 149 SNSLTLAMAAG 159
+S TL + G
Sbjct: 185 YHSQTLGLVIG 195
>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
AzwK-3b]
gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
AzwK-3b]
Length = 470
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 16/128 (12%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ + + E+ L L+K + +G E T I IP A +DV+G A+T +GKT AFGL
Sbjct: 30 DLNLFEEMGLPGPLVKKLALMGITEPTPIQTHAIP-FALDSEDVMGLAQTGTGKTAAFGL 88
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151
P L AK++EE G K APK +R+LI+ PTRELA Q+ P +K
Sbjct: 89 PLL----------AKLMEEPG----KPAPKA-VRSLILAPTRELAGQIRDTLLPLVKDTP 133
Query: 152 LTLAMAAG 159
+ +A+ G
Sbjct: 134 IKVALVVG 141
>gi|406864021|gb|EKD17067.1| ATP-dependent RNA helicase has1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 603
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 24/136 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 126 FSELNLSEKTMKAIEGMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 184
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ +I++PTRELALQ+ VA + +S T
Sbjct: 185 ML----------------NALRFKPRNGTGVIIVSPTRELALQIFGVARELMSHHSQTYG 228
Query: 156 MAAGSPLLTSEHSNRR 171
+ G +NRR
Sbjct: 229 IVIGG-------ANRR 237
>gi|367021686|ref|XP_003660128.1| hypothetical protein MYCTH_2132459 [Myceliophthora thermophila ATCC
42464]
gi|347007395|gb|AEO54883.1| hypothetical protein MYCTH_2132459 [Myceliophthora thermophila ATCC
42464]
Length = 584
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 19 AQEELVNEAEISTE-FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
AQ EL+ E + E + + LHP ++K++ G++ T I + +PA+ H DVIG
Sbjct: 114 AQIELIQEGPVRIEPIKTFEDAGLHPAMLKNVQLAGYETPTPIQRYCLPAI-HLGYDVIG 172
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAA------KMLEEKGEEAEKYAPKGHLRALIINP 131
A+T SGKT A+ +P L +L+ + +K A +E ++ + P +I+ P
Sbjct: 173 IAQTGSGKTAAYLVPILNKLMGKAKKLAAPRPNPATFQEGVDQRVRAEP----LVVIVCP 228
Query: 132 TRELALQVL 140
TRELA+Q+
Sbjct: 229 TRELAVQIF 237
>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 903
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I K GF T I + IP L RKDV+G A T SGKT AF +P ++
Sbjct: 90 FQAMGLNANLLRAITKKGFSVPTPIQRKTIP-LIMDRKDVVGMARTGSGKTAAFVIPMIE 148
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RL R +AK+ RALI++P+RELALQ L V K L
Sbjct: 149 RL---RAHSAKV---------------GTRALIMSPSRELALQTLKVVKEFSKGTDLKCI 190
Query: 156 MAAGSPLLTSEHS 168
+ G + + S
Sbjct: 191 LLVGGDSMEDQFS 203
>gi|295661021|ref|XP_002791066.1| ATP-dependent RNA helicase DBP7 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280993|gb|EEH36559.1| ATP-dependent RNA helicase DBP7 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 513
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 123 FSELNLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 181
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 182 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 225
Query: 156 MAAG 159
+ G
Sbjct: 226 IVIG 229
>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
gi|158514819|sp|A3LNR6.2|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
Length = 567
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 36/161 (22%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
V + DDAQ + +A +S M++I +GFK T + IP L
Sbjct: 93 VVDNEDDAQNDKFEDAGLSEP------------TMRAISDMGFKTMTKVQAKTIPPLL-A 139
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
KDV+GAA+T SGKT AF +PA++ L + K+ P+ ++++P
Sbjct: 140 GKDVLGAAKTGSGKTLAFLIPAIELLY----------------SLKFKPRNGTGVIVVSP 183
Query: 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
TRELALQ+ VA + ++ T + G +NRR+
Sbjct: 184 TRELALQIFGVARELMAHHTQTFGIVIGG-------ANRRQ 217
>gi|451848387|gb|EMD61693.1| hypothetical protein COCSADRAFT_163118 [Cochliobolus sativus
ND90Pr]
Length = 1132
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W ++ L M ++G+++ TSI +A+ ++ +D+IG A+T SGKT AFG+P ++
Sbjct: 492 WAQMGLLQATMDVFTRVGYQKPTSI-QAQAAPISLSGRDLIGVAKTGSGKTLAFGIPMIR 550
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L++R P LI+ PTREL+LQ++ P L ++ +T+
Sbjct: 551 HILDQR---------------PLKPSDGPIGLILAPTRELSLQIVHELKPFLSASGITIK 595
Query: 156 MAAG 159
A G
Sbjct: 596 CAYG 599
>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
gi|74659615|sp|Q6C024.1|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica CLIB122]
Length = 575
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 14/106 (13%)
Query: 35 AWNELRLHPLLMK-SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+WNE + P +++ +I ++G+KE T I +A IP +A +DVIG AET SGKT +F +P
Sbjct: 163 SWNECKEIPGIVRDTISRMGYKEPTPIQRAAIP-IALGIRDVIGVAETGSGKTASFLIPL 221
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ + E L + E ++ P G LI+ PTRELA+Q+
Sbjct: 222 ISYICE--------LPKLDERSKVNGPYG----LILAPTRELAMQI 255
>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351656|sp|Q09903.1|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe]
Length = 754
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
++T ++ + L ++K + LGF+ T I IP LA KD++GAA T SGKT A
Sbjct: 254 MTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIP-LALLGKDIVGAAVTGSGKTAA 312
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPS 146
F +P L+RLL Y PK R LI+ PTRELA+Q VA+
Sbjct: 313 FIVPILERLL-------------------YRPKKVPTTRVLILCPTRELAMQCHSVATKI 353
Query: 147 LKSNSLTLAMAAGS-PLLTSEHSNRRKPN 174
+ + + G L E R++P+
Sbjct: 354 ASFTDIMVCLCIGGLSLKLQEQELRKRPD 382
>gi|415700048|ref|ZP_11457779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|381315039|gb|EIC55803.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
Length = 290
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEA-------TIQALVIAPTRELAVQ 84
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +GKT AF LP L
Sbjct: 139 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGMLGKDICACAATGTGKTAAFALPVL 197
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMVASPSLKSNSL 152
+RL+ Y P+ R L++ PTREL +QV V + +++
Sbjct: 198 ERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNV 238
Query: 153 TLAMAAG 159
T +A G
Sbjct: 239 TTCLAVG 245
>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
Length = 458
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L+L PLL+K++ + G+ + I + IP + R DV+G A+T +GKT AF LP +Q
Sbjct: 15 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGR-DVLGCAQTGTGKTAAFALPIIQ 73
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L++ EK KY+ K +R+LI+ PTR+LALQ+
Sbjct: 74 NLMKPSEK-------------KYS-KRVIRSLILTPTRKLALQI 103
>gi|307703245|ref|ZP_07640191.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
gi|307623320|gb|EFO02311.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
Length = 224
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKT 86
+E T F + N L ++KS+ LGF T I A IP +A KDV+G A T SGKT
Sbjct: 183 SEAHTSFLSMN---LSRPIIKSLTTLGFTTPTPIQAATIP-VALLGKDVVGNAVTGSGKT 238
Query: 87 RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146
AF +P L+RL M ++G++A R L++ PTREL +Q V +
Sbjct: 239 AAFIIPMLERL---------MYRDRGKKA------AATRCLVLVPTRELGVQCFEVGTKL 283
Query: 147 LKSNSLTLAMAAGSPLLTSEHSN-RRKPN 174
+ A+ G + ++ +N R +P+
Sbjct: 284 AAHTDIRFALVVGGLSIKAQEANLRTRPD 312
>gi|348531313|ref|XP_003453154.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Oreochromis niloticus]
Length = 847
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
+ + AW +L + P +++++ LGF T I +P R D++GAAET SGKT AF
Sbjct: 238 NVDMSAWKDLFVPPPVLRALSSLGFGSPTPIQALCLPPAIRDRMDILGAAETGSGKTLAF 297
Query: 90 GLPALQRLLE----EREKAAKMLEEKGEEAEK 117
G+P + +LE E K+A+ +E+G EA K
Sbjct: 298 GIPIIHTILEWKHNEYTKSAEEDQEEGVEASK 329
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+S F ++ LH L+KSI + G+ T I IPA A +DV+GAA+T +GKT
Sbjct: 1 MSDIFSHFSHFGLHDDLLKSIAEQGYAVPTPIQVHAIPA-ALAGRDVMGAAQTGTGKTAG 59
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
F LP LQRLL + +P H +RALI+ PTRELA QV
Sbjct: 60 FSLPILQRLLPLANASV-------------SPARHPVRALILTPTRELADQV 98
>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
Length = 410
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 19/99 (19%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
LHP L ++ LG+ + T+I + IP + KDV+GAA+T +GKT AF LP + +LLE
Sbjct: 9 LHPTLQHTLNALGYSDPTAIQQQAIPHVL-DGKDVMGAAQTGTGKTAAFALPVIHQLLER 67
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
KG R L++ PTRELA QV
Sbjct: 68 ------------------GVKGAARVLVVTPTRELAQQV 88
>gi|342164201|ref|YP_004768840.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
gi|341934083|gb|AEL10980.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
Length = 524
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP L + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LVLEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|310798110|gb|EFQ33003.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 607
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L M +I ++GF + T I + IP L KDV+GAA+T SGKT AF +PA++
Sbjct: 130 FAQLNLSEKTMTAIKEMGFTKMTEIQRRGIPPLL-SGKDVLGAAKTGSGKTLAFLIPAVE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 189 ML----------------HALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 232
Query: 156 MAAG 159
+ G
Sbjct: 233 IVIG 236
>gi|241955319|ref|XP_002420380.1| ATP-dependent rRNA helicase, putative; ribosomal biogenesis
protein, putative [Candida dubliniensis CD36]
gi|223643722|emb|CAX41458.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 635
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 30 STEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+TE AW LR LHP + ++I +G+ T + + IP L+ KDV+ A T SGKT
Sbjct: 4 NTESLAWENLRYDLHPWIKEAIASMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
+F +P LQ++ + K + G+ E +GH+ +++++PTRELA Q+ V + L
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQTVFNQVL 117
Query: 148 K 148
+
Sbjct: 118 Q 118
>gi|344300784|gb|EGW31105.1| ATP-dependent RNA helicase HAS1 [Spathaspora passalidarum NRRL
Y-27907]
Length = 560
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ L
Sbjct: 108 MKAITEMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELL-------- 158
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ K P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 159 --------HSLKIKPRNGTAVIIITPTRELALQIFGVARQLMEHHSQTCGIVIG 204
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 65/133 (48%), Gaps = 27/133 (20%)
Query: 7 ATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIP 66
A V V + DD +E E + L L +L ++ +L +KE T I + IP
Sbjct: 2 AATVSVESAADDQKETTAQEPA------TFKSLGLVDVLCETCEQLKWKEPTKIQRESIP 55
Query: 67 ALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126
LA + KDVIG AET SGKT AF LP LQ LLE ++ L A
Sbjct: 56 -LALEGKDVIGLAETGSGKTGAFALPILQDLLEHPQR--------------------LFA 94
Query: 127 LIINPTRELALQV 139
LI+ PTRELA Q+
Sbjct: 95 LILTPTRELAFQI 107
>gi|195486926|ref|XP_002091709.1| GE13811 [Drosophila yakuba]
gi|194177810|gb|EDW91421.1| GE13811 [Drosophila yakuba]
Length = 808
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 40/163 (24%)
Query: 17 DDAQEELVNEAEIST----EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
D + EE IST + AWN L + +++++ + GFK T I +PA H +
Sbjct: 189 DSSDEEAPELVPISTSEAEDVSAWNGLGVPASILRALGEQGFKAPTQIQALTLPAAIHGK 248
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEERE--------KAAKMLEEKGE----------- 113
KD++GAAET SGKT AFG+P L ++E ++ KA K+ ++ E
Sbjct: 249 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 308
Query: 114 ---------------EAEKYAPKGH--LRALIINPTRELALQV 139
+AE+ A + L L++ PTRELA+QV
Sbjct: 309 PEELDHVSGASDEESDAEEQAQRIQTPLYGLVLTPTRELAVQV 351
>gi|148232160|ref|NP_001084651.1| uncharacterized protein LOC414610 [Xenopus laevis]
gi|46249606|gb|AAH68844.1| MGC81500 protein [Xenopus laevis]
Length = 317
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 24/124 (19%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
P+D + L N E E + +L + +L ++ +LG+K+ T I IP +A Q +D+
Sbjct: 4 PEDEHDVLENAEE---EQKTFRDLGVTDVLCEACEQLGWKQPTKIQIEAIP-MALQGRDI 59
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
IG AET SGKT AF LP LQ LLE ++ L AL++ PTREL
Sbjct: 60 IGLAETGSGKTGAFALPILQTLLESPQR--------------------LYALVLTPTREL 99
Query: 136 ALQV 139
A Q+
Sbjct: 100 AFQI 103
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L ++K+I +LG++E+T I IP + Q KD+IG A+T +GKT AFG+P L+
Sbjct: 6 FEELNLSKEILKAIEELGYEEATPIQAKTIPIIL-QGKDIIGQAQTGTGKTAAFGIPTLE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+ K ++ALI+ PTRELA+QV
Sbjct: 65 RI--------------------DPSKKTIQALILCPTRELAIQV 88
>gi|393217844|gb|EJD03333.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 964
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 18/109 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ G+K T I + IP L A+ +D++G A T SGKT A+ +P
Sbjct: 98 SFQSMGLHPPLLRSLTLRGYKVPTPIQRLSIPTLLANPPRDLVGMARTGSGKTLAYMVPL 157
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
QRL G A + RALI+ PTRELALQVL V
Sbjct: 158 TQRL-------------SGRHATTFGA----RALILIPTRELALQVLKV 189
>gi|427792819|gb|JAA61861.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 696
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 8 TVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
TV V N D+A++ V +A E ++ ++ L L+K++ + F T I + IP
Sbjct: 101 TVEGVENEEDEAED--VTQAFFGDENTSFQQMNLSRPLLKALTAMNFVYPTPIQSSTIP- 157
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL--R 125
+A +D+ A T +GKT AF LP L+RLL + PK + R
Sbjct: 158 MALLGRDIYACAATGTGKTAAFMLPVLERLL-------------------FRPKQDVVTR 198
Query: 126 ALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
L+I PTRELA+QV V+ + ++ + ++AG L ++ + RK
Sbjct: 199 VLVIVPTRELAVQVYQVSLQLAQFTNIMITLSAGGLDLKAQEAALRK 245
>gi|226289876|gb|EEH45360.1| ATP-dependent RNA helicase HAS1 [Paracoccidioides brasiliensis
Pb18]
Length = 607
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 130 FSELNLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 189 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 232
Query: 156 MAAG 159
+ G
Sbjct: 233 IVIG 236
>gi|50427631|ref|XP_462428.1| DEHA2G20372p [Debaryomyces hansenii CBS767]
gi|74600402|sp|Q6BH93.1|HAS1_DEBHA RecName: Full=ATP-dependent RNA helicase HAS1
gi|49658098|emb|CAG90938.1| DEHA2G20372p [Debaryomyces hansenii CBS767]
Length = 568
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
N +I T D + E L +K+I +GF + T + IP L R DV+GAA+T SG
Sbjct: 97 NHDDIVT--DNFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGR-DVLGAAKTGSG 153
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF +PA++ L R + P+ ++++PTRELALQ+ VA
Sbjct: 154 KTLAFLIPAIEMLYSLR----------------FKPRNGTGVVVVSPTRELALQIFGVAR 197
Query: 145 PSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
+ +S T + G +NRR+
Sbjct: 198 ELMAHHSQTFGIVIGG-------ANRRQ 218
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P ++K++ + G+ T I IP + Q +DV+GAA+T +GKT F LP +Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RLL+ +A +P H +RALI+ PTRELA QV
Sbjct: 77 RLLQHASHSA-------------SPARHPVRALILTPTRELADQV 108
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K++ + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL + +A +P H +RALI+ PTRELA QV K +L
Sbjct: 72 RLLPQASTSA-------------SPARHPVRALILTPTRELADQVAANVQSYAKHTALRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|451998973|gb|EMD91436.1| hypothetical protein COCHEDRAFT_1101623 [Cochliobolus
heterostrophus C5]
Length = 1058
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W ++ L M ++G+++ TSI +A+ ++ +D+IG A+T SGKT AFG+P ++
Sbjct: 418 WAQMGLLQATMDVFTRVGYQKPTSI-QAQAAPISLSGRDLIGVAKTGSGKTLAFGIPMIR 476
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L++R P LI+ PTREL+LQ++ P L ++ +T+
Sbjct: 477 HILDQR---------------PLKPSDGPIGLILAPTRELSLQIVHELKPFLSASGITIK 521
Query: 156 MAAG 159
A G
Sbjct: 522 CAYG 525
>gi|378756699|gb|EHY66723.1| hypothetical protein NERG_00363 [Nematocida sp. 1 ERTm2]
Length = 462
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 17/108 (15%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ E L +L+K + GFK S +++++I LA QR++++ +A+T SGKT AF +P L
Sbjct: 2 SFKEFNLSAVLLKGLEAGGFK-SPKLVQSKIIPLAMQRQNIVCSAKTGSGKTLAFLIPTL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+RLL K++ + L ALII PTRELALQ+ V
Sbjct: 61 ERLLR----------------VKWSREDGLGALIITPTRELALQIFTV 92
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E+ + + EL L L K++ KLG+ + T I IP + + KD++ +A T SGKT
Sbjct: 228 EVVMDLPTFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNG-KDILASATTGSGKTA 286
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL--RALIINPTRELALQVLMVA-S 144
AF LP L+RLL Y H R LI+ PTRELALQ V S
Sbjct: 287 AFILPILERLL-------------------YRDATHRVSRVLIVLPTRELALQCHSVFES 327
Query: 145 PSLKSNSLTLAMAAGSPLLTSEHSNRRKPN 174
+ +N + + G EH R++P+
Sbjct: 328 LAQFTNVQSCLVVGGLSNKVQEHELRKRPD 357
>gi|255723333|ref|XP_002546600.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
gi|240130731|gb|EER30294.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
Length = 572
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ L + K
Sbjct: 125 MKAIKEMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLYSLKIK-- 181
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 182 --------------PRNGTAVIIITPTRELALQIFGVARELMQYHSQTCGIVIG 221
>gi|224014332|ref|XP_002296829.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968684|gb|EED87030.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 884
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 50 YKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL--LEEREKAAKM 107
+ L + T I + +PA R+DV+GAA T SGKT ++GLP LQ + L++ E AA +
Sbjct: 207 HSLNYSYPTPIQASTLPAAILGRRDVVGAAPTGSGKTLSYGLPILQWVLGLDDAEIAA-L 265
Query: 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
EE +A + K L+ALI+ PTRELA+QV
Sbjct: 266 DEEDSADAGEPKQKRPLQALILVPTRELAIQV 297
>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 581
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++++ G++ T I IPA+ D++ A+T +GKT AF LP L
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVL-AGHDLLAGAQTGTGKTAAFTLPILH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL + AAK K+ KG +RAL++ PTRELA QV
Sbjct: 62 RL--SQNPAAK---------NKFGGKG-IRALVLTPTRELAAQV 93
>gi|421218220|ref|ZP_15675114.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070335]
gi|395582989|gb|EJG43438.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070335]
Length = 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 21/102 (20%)
Query: 37 NELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQR 96
NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L++
Sbjct: 4 NELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLEK 62
Query: 97 LLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ + EEA ++AL+I PTRELA+Q
Sbjct: 63 I-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
98AG31]
Length = 815
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+ LH ++ I LG++ + I +PA+ R DVIG A+T SGKT AF LP +
Sbjct: 150 WSWFGLHSACLEVIKSLGYQAPSPIQGQAVPAIMSGR-DVIGVAKTGSGKTLAFLLPMFR 208
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ ++R LE A +G + A+I+ PTRELA Q+ P LK+ L A
Sbjct: 209 HIKDQRP-----LE---------ALEGPI-AMIMTPTRELATQIYKEGRPFLKALGLRAA 253
Query: 156 MA-AGSPL 162
A GSPL
Sbjct: 254 CAYGGSPL 261
>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
Length = 493
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L+ L+K+I + GF+E+T I IP LA KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FLELGLNEDLLKAIKRSGFEEATPIQAETIP-LALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
L++ EK ++A+II PTRELA+Q
Sbjct: 62 N-LDKHEKT-------------------IQAVIIEPTRELAIQ 84
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
NE T A+ +L+L L +++ ++G+ T I IP + KDV+GAA+T +G
Sbjct: 13 NELTADTPTMAFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTG-KDVMGAAQTGTG 71
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
KT AF LP LQRL+ K E A + +RAL++ PTRELA QV
Sbjct: 72 KTAAFALPLLQRLM------------KHENASTSPARHPVRALVLLPTRELADQVAQQVK 119
Query: 145 PSLKSNSLTLAMAAG 159
K +L A+ G
Sbjct: 120 LYAKYTNLRSAVVFG 134
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LH ++K+I + G+ T I IP + R DV+GAA+T +GKT F LP +Q
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGR-DVMGAAQTGTGKTAGFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K SL
Sbjct: 72 RLLPLASTSA-------------SPARHPVRALILTPTRELADQVAANVQAYAKHTSLRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|448515464|ref|XP_003867345.1| Spb4 ATP-dependent RNA helicase [Candida orthopsilosis Co 90-125]
gi|380351684|emb|CCG21907.1| Spb4 ATP-dependent RNA helicase [Candida orthopsilosis]
Length = 616
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
AW LR L+P L ++ LG+ T + + IP L KDVI A T SGKT AF +P
Sbjct: 9 AWENLRYDLYPWLKDALLSLGYPSMTPVQASTIPLLCGN-KDVIVEAVTGSGKTLAFAIP 67
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAP--KGHLRALIINPTRELALQVLMV 142
L+R+ +K L E+ K P + H+ +++I+PTRELA Q+ MV
Sbjct: 68 VLERV-------SKRLYTPDEDG-KLEPLKRNHILSIVISPTRELAKQIQMV 111
>gi|421871323|ref|ZP_16302945.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372459950|emb|CCF12494.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 506
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+NEL L P +++SI +GF+E+T I IP +A +D+IG A+T +GKT AFG+P +
Sbjct: 3 TFNELGLSPSVLRSISNMGFEEATPIQALTIP-VALTGRDLIGQAQTGTGKTVAFGIPMI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ H++ +++ PTRELA+QV
Sbjct: 62 EKI--------------------DTSSNHIQGIVLAPTRELAVQV 86
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 33/137 (24%)
Query: 15 GPDDAQEELVNEA---EISTEFD---------AWNELRLHPLLMKSIYKLGFKESTSILK 62
GP+ E+ V+EA E ST D + +L + L ++ +LG+K+ T+I +
Sbjct: 31 GPEPRIEDAVSEASDAEESTTLDNENGEAAPKTFKDLGIVDSLCEACDRLGYKQPTAIQQ 90
Query: 63 ARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG 122
IP LA Q +D+IG AET SGKT AF LP LQ LL++ +
Sbjct: 91 EAIP-LALQDRDIIGIAETGSGKTAAFALPILQALLDKPQP------------------- 130
Query: 123 HLRALIINPTRELALQV 139
L AL++ PTRELA Q+
Sbjct: 131 -LFALVLAPTRELAAQI 146
>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
Length = 422
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+S +++L L P L+ ++ LG T I + IP + Q KDV+ A+T +GKT A
Sbjct: 1 MSETLITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAA 59
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
FGLP +QR +E+ + EE +E +RAL++ PTRELA QVL K
Sbjct: 60 FGLPLIQRFIEQ----PWVREENSKE---------IRALVLVPTRELAQQVLDSMQAYAK 106
Query: 149 SNSLTLAMAAG 159
L + G
Sbjct: 107 GTELKIVAVYG 117
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 18/120 (15%)
Query: 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGK 85
+A ST + + L L+K++ LGF++ T I A IP +A KDV+G A T SGK
Sbjct: 211 DAATSTSDVTFQSMNLSRPLLKALANLGFEKPTPIQAAAIP-VALLGKDVVGGAVTGSGK 269
Query: 86 TRAFGLPALQRLL-EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
T AF +P L+RLL +R KAA R +I+ PTRELA+Q VA+
Sbjct: 270 TAAFVIPILERLLFRDRGKAA----------------ATTRVVILCPTRELAVQCHAVAT 313
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LH ++K+I + G+ T I IP + R DV+GAA+T +GKT F LP +Q
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGR-DVMGAAQTGTGKTAGFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K SL
Sbjct: 72 RLLPLASTSA-------------SPARHPVRALILTPTRELADQVAANVQAYAKHTSLRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+NEL L P +++SI +GF+E+T I IP +A +D+IG A+T +GKT AFG+P +
Sbjct: 3 TFNELGLSPSVLRSISNMGFEEATPIQALTIP-VALTGRDLIGQAQTGTGKTVAFGIPMI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ H++ +++ PTRELA+QV
Sbjct: 62 EKI--------------------DTSSNHIQGIVLAPTRELAVQV 86
>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 460
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P +++++ ++G+ T I IP A Q D++GAA+T +GKT AF LP +Q
Sbjct: 4 FAELGLAPDILRALDEMGYVSPTPIQAQVIPR-ALQGGDILGAAQTGTGKTAAFALPLIQ 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RLL + +P H +RALI+ PTRELA+QV
Sbjct: 63 RLLPFANTST-------------SPAKHPIRALILTPTRELAIQV 94
>gi|68468064|ref|XP_721871.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
gi|74656630|sp|Q5AK59.1|HAS1_CANAL RecName: Full=ATP-dependent RNA helicase HAS1
gi|46443813|gb|EAL03092.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
Length = 565
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ L + K
Sbjct: 120 MKAIKEMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLYSLKIK-- 176
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 177 --------------PRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIG 216
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P +
Sbjct: 22 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLV- 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV 139
EK P+ +++A++I PTRELA+QV
Sbjct: 80 --------------------EKINPESPNIQAIVIAPTRELAIQV 104
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFDLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|424809155|ref|ZP_18234540.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|342323580|gb|EGU19364.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
Length = 422
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L P L+ ++ LG T I + IP + Q KDV+ A+T +GKT AFGLP +Q
Sbjct: 8 FSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
R +E+ + EE +E +RAL++ PTRELA QVL K L +
Sbjct: 67 RFIEQ----PWVREENSKE---------IRALVLVPTRELAQQVLDSMQAYAKGTELKIV 113
Query: 156 MAAG 159
G
Sbjct: 114 AVYG 117
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L LHP ++++I G++E T I + IPA+ R D++ +A+T +GKT F LP L
Sbjct: 2 SFDSLGLHPDILRAIAGQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFSLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q L+ ++ A KG +RALI+ PTRELA Q+
Sbjct: 61 QHLITQQPHA------KGRRP--------VRALILTPTRELAAQI 91
>gi|219118375|ref|XP_002179962.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408219|gb|EEC48153.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 948
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 34 DAW----NELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
DAW + L + +++ F T I A +PA R++V+GAA T SGKT AF
Sbjct: 233 DAWLMQTGGVSLDLAICEALVLQSFWTPTPIQAATLPAAILGRRNVVGAAPTGSGKTLAF 292
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV----LMVASP 145
LP Q LL+++E +EA K L+ALI+ PTRELALQ+ + + S
Sbjct: 293 LLPVAQFLLQKQESM-----HINDEATK---DDSLQALIVTPTRELALQIHREAVSLLSS 344
Query: 146 SLKSNSLTLAMAAG 159
S+K NS + G
Sbjct: 345 SIKKNSGCGVLVGG 358
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P +
Sbjct: 22 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLV- 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKG-HLRALIINPTRELALQV 139
EK P+ +++A++I PTRELA+QV
Sbjct: 80 --------------------EKINPESPNIQAIVIAPTRELAIQV 104
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ + K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
Length = 413
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 39 LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98
L L+ L++++ + G+ T I A I + Q KDV+ A+T +GKT AF LP LQRL
Sbjct: 6 LGLNQQLVQALTECGYDTPTPIQTAAIGEIL-QGKDVMAGAQTGTGKTAAFALPILQRLA 64
Query: 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAA 158
E+ E+ KG LR L++ PTRELA QV + + LT A+A
Sbjct: 65 EQPER-----------------KGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAY 107
Query: 159 G 159
G
Sbjct: 108 G 108
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 332 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 390
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 391 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 431
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 432 TKQLAQFCNITTCLAVG 448
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L P L+++I +LG++ + I IP + Q +DV+ AA+T +GKT F LP L
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVI-QGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL K A H+RAL++ PTRELA QV
Sbjct: 61 QRL----------------AGGKSAKSNHVRALVLTPTRELAAQV 89
>gi|440638151|gb|ELR08070.1| hypothetical protein GMDG_02897 [Geomyces destructans 20631-21]
Length = 741
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L +EAE + W EL L ++ ++ K+GF T I + IP + DVIG A T
Sbjct: 203 LQDEAE-DEDMTEWAELNLSTAMLSALAKIGFTTPTPIQQEAIPEVLSG-NDVIGKASTG 260
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFG+P ++R L++ E + E A + + ALI++PTRELA Q+
Sbjct: 261 SGKTLAFGIPIIERWLQDNEG------REDETATEKKTQKSATALILSPTRELAHQL 311
>gi|225682474|gb|EEH20758.1| ATP-dependent RNA helicase has1 [Paracoccidioides brasiliensis
Pb03]
Length = 607
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L MK+I + F+ T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 130 FSELNLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAVE 188
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ ++++PTRELALQ+ VA + +S T
Sbjct: 189 ML----------------SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG 232
Query: 156 MAAG 159
+ G
Sbjct: 233 IVIG 236
>gi|419493712|ref|ZP_14033437.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379592285|gb|EHZ57101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
Length = 524
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EE ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEV-------TIQALVIAPTRELAVQ 84
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P ++K++ + G+ T I IP + Q +DV+GAA+T +GKT F LP +Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
RLL+ +A +P H +RALI+ PTRELA QV
Sbjct: 77 RLLQHASHSA-------------SPARHPVRALILTPTRELADQV 108
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 24/127 (18%)
Query: 16 PDDAQEELVNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
PD + + +EAE + + D W +L L+ L K+ +L +K + I K IP +A Q
Sbjct: 43 PDTSDPDEADEAEEAPKDDQPLTWKDLGLNDTLCKACEELKWKAPSKIQKEAIP-VALQG 101
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
KDVIG AET SGKT AF LP L LLE P+ + AL++ PT
Sbjct: 102 KDVIGLAETGSGKTGAFALPILHALLEN-------------------PQRYF-ALVLTPT 141
Query: 133 RELALQV 139
RELA Q+
Sbjct: 142 RELAFQI 148
>gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 446
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
FDA++ LHP ++ ++ K G+K T + +P +A +D++ A+T +GKT AF LP
Sbjct: 3 FDAFD---LHPHILDAVSKRGYKALTEVQCHVLP-VAMLGQDIMACAQTGTGKTAAFALP 58
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L L+ + + +K+ EE + +Y + L+ L++ PTRELA+QV
Sbjct: 59 LLNTLVGQALQQSKVAEE--DTFNQY--RSELKVLVLTPTRELAIQV 101
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
nagariensis]
gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
nagariensis]
Length = 574
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L LL+K+I ++G+K+ + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 157 WEESGLPSLLIKAIDRVGYKKPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPMLS 215
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EE E P A+++ PTRELA Q+
Sbjct: 216 YIMRQPPMT--------EENEADGPY----AVVLAPTRELAQQI 247
>gi|238882563|gb|EEQ46201.1| ATP-dependent rRNA helicase SPB4 [Candida albicans WO-1]
Length = 631
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 30 STEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+TE AW LR LHP + ++I +G+ T + + IP L+ KDV+ A T SGKT
Sbjct: 4 NTESLAWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
+F +P LQ++ + K + G+ E +GH+ +++++PTRELA Q+ V + L
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQSVFNQVL 117
Query: 148 K 148
+
Sbjct: 118 Q 118
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ + K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEVEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
ACN14a]
gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
ACN14a]
Length = 608
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 18/104 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L++S+ LG++E T I + +P L R D++G A T +GKT AF LP L
Sbjct: 59 FAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGR-DLLGQAATGTGKTAAFALPLLH 117
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL ++R + P+ AL++ PTRELA+QV
Sbjct: 118 RLTDDRTG-------------DHGPQ----ALVLVPTRELAVQV 144
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L + + K GF+E T I K IP L H++ DVIG A T +GKT AFG+P L+
Sbjct: 7 FADLGLSARTLDVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILE 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+ E ++ALI+ PTRELA+QV S S+ L++A
Sbjct: 67 TVDEH--------------------DSTVQALILAPTRELAVQVADEISSMRPSSGLSIA 106
Query: 156 MAAG 159
G
Sbjct: 107 AIYG 110
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 23/105 (21%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL + ++K++ ++GF EST I A IP + R DVIG A+T +GKT AFG+PA++
Sbjct: 70 FSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGR-DVIGQAQTGTGKTAAFGIPAIE 128
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ E+R + + LI+ PTRELALQV
Sbjct: 129 HVNAEDR---------------------NTQVLILCPTRELALQV 152
>gi|238882849|gb|EEQ46487.1| hypothetical protein CAWG_04842 [Candida albicans WO-1]
Length = 569
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ L + K
Sbjct: 124 MKAIKEMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLYSLKIK-- 180
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 181 --------------PRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIG 220
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 20/104 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE+ L L+++I + GF E + I K IP L + +D++G A+T +GKT AF LP LQ
Sbjct: 3 FNEMNLIKPLLQAIKEEGFIEPSPIQKKTIP-LVLEGRDILGCAQTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L KGE + +RALII PTRELA+Q+
Sbjct: 62 SL------------SKGEGS-------GVRALIITPTRELAIQI 86
>gi|68467745|ref|XP_722031.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
gi|46443978|gb|EAL03256.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
Length = 569
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ L + K
Sbjct: 124 MKAIKEMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLYSLKIK-- 180
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 181 --------------PRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIG 220
>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
Length = 519
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 76/175 (43%), Gaps = 46/175 (26%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P L K + KLG K T I + IPA+ KD IGAA+T SGKT AF LP L+
Sbjct: 9 FQKLGLRPWLAKQLTKLGLKGVTPIQENCIPAILSG-KDCIGAAKTGSGKTFAFALPILE 67
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
+L EE P H AL++ PT ELA Q+ S
Sbjct: 68 KLSEE-------------------PVSHF-ALVLTPTHELAYQI---------SEQF--- 95
Query: 156 MAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQPKTTTLLPSSLA 210
+ AG P+ R GG D+ ++S K + +P +P LA
Sbjct: 96 LVAGQPM-----------GVRVCVVSGGTDQMIESQKL--MQRPHIVVAMPGRLA 137
>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108873494|gb|EAT37719.1| AAEL010317-PA [Aedes aegypti]
Length = 804
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
+D ++ EA + E ++ ++ L LMK+I LG+ T I A IP +A +D+
Sbjct: 164 EDEPQDFFEEAGGNEEISSFYQMNLSRPLMKAIGVLGYIYPTPIQAATIP-IALLGRDIC 222
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP---KGHLRALIINPTR 133
G A T +GKT A+ LP L+RLL Y P + R L++ PTR
Sbjct: 223 GCAATGTGKTAAYMLPTLERLL-------------------YKPSAAQAVTRVLVLVPTR 263
Query: 134 ELALQVLMVASPSLKSNSLTLAMAAG 159
EL QV V+ + S+ + +A G
Sbjct: 264 ELGAQVYQVSKQLTQFTSIEVGIAIG 289
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|431795901|ref|YP_007222805.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430786666|gb|AGA76795.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 416
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 19/106 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +LR+ P ++K++ G+ E TSI IP + R DV+G A+T +GKT AF +P +Q
Sbjct: 3 FKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGR-DVLGCAQTGTGKTAAFAIPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYA--PKGHLRALIINPTRELALQV 139
+ E YA P +R+LI+ PTRELA+Q+
Sbjct: 62 HIHE----------------APYANEPWAKIRSLIVTPTRELAIQI 91
>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase [Desulfohalobium retbaense DSM 5692]
gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
DSM 5692]
Length = 403
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 23/113 (20%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
FDA++ LH + I GF + T I +P LA + KDV+G A+T +GKT AF L
Sbjct: 2 HFDAFS---LHEKITTGIAACGFTQPTPIQAQALP-LALEGKDVLGLAQTGTGKTAAFVL 57
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144
P LQRL+ P+ +RALI++PTRELA Q + V +
Sbjct: 58 PILQRLMS-------------------GPRRRVRALIVSPTRELAEQTVQVCN 91
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 267
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 268 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 308
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 309 TRQLAQFCNITTCLAVG 325
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 22/139 (15%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ + L +M+ I +GF + T I IP +A KDV+G A T SGKT AF LP L
Sbjct: 246 SFQVMSLSRPIMRGITAVGFTKPTPIQAKTIP-IALMGKDVVGGAVTGSGKTAAFVLPIL 304
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y PK R +I+ PTRELA+Q VA+ +
Sbjct: 305 ERLL-------------------YRPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDI 345
Query: 153 TLAMAAGSPLLTSEHSNRR 171
+A G L ++ + R
Sbjct: 346 KFTLAVGGLSLKAQETELR 364
>gi|336422222|ref|ZP_08602374.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009132|gb|EGN39130.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 526
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P +MK++ +GF+E++ I IPA+ + KD+IG A+T +GKT AFG+P L+
Sbjct: 6 FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAML-EGKDIIGQAQTGTGKTAAFGIPLLE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + +K L+A+++ PTRELA+QV
Sbjct: 65 KIDLKNKK--------------------LQAIVLCPTRELAIQV 88
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 21/106 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+L+L L+K++ + G++ + I + IP + R D++G A+T +GKT AF LP L
Sbjct: 3 FNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGR-DLMGCAQTGTGKTAAFALPMLD 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAP--KGHLRALIINPTRELALQV 139
RL AP KG +RALI+ PTRELALQ+
Sbjct: 62 RL------------------SAAAPRRKGAVRALILTPTRELALQI 89
>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
Length = 796
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 267
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 268 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 308
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 309 TRQLAQFCNITTCLAVG 325
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L +++SI +GF+E+T I + IP +A Q +D+IG A+T +GKT A+G+P +
Sbjct: 3 SFTDLGLSETIIRSIVNMGFEETTPIQEMTIP-IALQGRDLIGQAQTGTGKTAAYGIPLI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+R E+ E+ ++ +++ PTRELA+QV
Sbjct: 62 ERFAEQSEQ--------------------IQGIVLAPTRELAVQV 86
>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 529
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL H L K++ K+G+ E T I IP A + D+ G A+T +GKT AF LP L
Sbjct: 3 FNELPFHESLSKALDKIGYVELTPIQAKSIP-FAMEGNDLTGLAQTGTGKTMAFLLPTLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL E EEA Y AL++ PTREL +Q+ A L+ L +A
Sbjct: 62 RLLSAEE----------EEALPY-------ALVLAPTRELTIQIAEEAKKLLEFTDLGVA 104
Query: 156 MAAG 159
G
Sbjct: 105 TIIG 108
>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 497
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P ++++++++GF+E+T I + IP LA + KD+IG A T +GKT AFG+P +
Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIP-LAMEGKDLIGQARTGTGKTAAFGIPMV- 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
EA + KG ++ L++ PTRELA+QV
Sbjct: 62 ------------------EAIRPTSKG-VQGLVVVPTRELAVQV 86
>gi|429329858|gb|AFZ81617.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 562
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W++ R+ ++ +I L F T I+++R+ +A + KD++ AET SGKT AF +P LQ
Sbjct: 72 WSDFRICRSILLAISDLEFTRPT-IIQSRVIPIALEGKDILATAETGSGKTAAFIIPMLQ 130
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ---VLMVASPSLKSNSL 152
RL+ K G+ + + K +AL++ PTRELA Q VL + L N +
Sbjct: 131 RLVLSNVLTPK----NGKFGFRNSTKDVTKALVLLPTRELAAQCYDVLKALTRFLNINDI 186
Query: 153 TLAMAAGSPLLTSEHSNRRKPN 174
L G P+ E R PN
Sbjct: 187 LL--TGGIPIKEQETKLSRIPN 206
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L LMK+I ++GF+E+T I IP L KDVIG A+T +GKT AFG+P ++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIP-LGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E +P +++A++I PTRELA+QV
Sbjct: 64 KINPE------------------SP--NIQAIVIAPTRELAIQV 87
>gi|336263707|ref|XP_003346633.1| hypothetical protein SMAC_04806 [Sordaria macrospora k-hell]
gi|380090528|emb|CCC11825.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 934
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 19/108 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I + GF T I + IP L +RKDV+G A T SGKT AF +P ++
Sbjct: 102 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIP-LILERKDVVGMARTGSGKTAAFVIPMIE 160
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
RL KG ++P+ RALI++P+RELALQ L V
Sbjct: 161 RL-------------KG-----HSPRVGARALIMSPSRELALQTLKVV 190
>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|385829155|ref|YP_005866927.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|385836364|ref|YP_005874139.1| DEAD/DEAH box helicase [Lactobacillus rhamnosus ATCC 8530]
gi|418071067|ref|ZP_12708341.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|421770133|ref|ZP_16206834.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|421772789|ref|ZP_16209442.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
gi|423078246|ref|ZP_17066931.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|355395856|gb|AER65286.1| DEAD/DEAH box helicase family protein [Lactobacillus rhamnosus ATCC
8530]
gi|357538561|gb|EHJ22581.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|357551850|gb|EHJ33633.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|411182661|gb|EKS49806.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|411183203|gb|EKS50343.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
Length = 502
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+K+I + GF+E+T I IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ +KA + ++ AL+I+PTRELA+Q
Sbjct: 62 HI----DKADRSIQ----------------ALVISPTRELAIQ 84
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 182 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 240
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 241 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 281
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 282 TRQLAQFCNITTCLAVG 298
>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 621
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 14 NGPDDAQEE--LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
NG + A+E L A + + + EL + P ++ ++ ++G + + +I + +P LA
Sbjct: 75 NGAEQAEEAHPLQAGAPVRADSPTFAELGVRPEIVSALAEVGIERTFAIQELTLP-LALA 133
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
+D+IG A T +GKT FG+P LQR++ E+ A E + + K P+ AL++ P
Sbjct: 134 GEDLIGQARTGTGKTLGFGVPLLQRIVPPAERPAATAEGEAADRTKDVPQ----ALVVVP 189
Query: 132 TRELALQV 139
TREL +QV
Sbjct: 190 TRELCVQV 197
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 22/119 (18%)
Query: 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
+A++ T F + N R PLL +++ GF T I A IP +A KDV+G A T SG
Sbjct: 180 TDAQVHTSFTSMNLSR--PLL-RALTSAGFNSPTPIQAATIP-VALLGKDVVGGAVTGSG 235
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
KT AF +P L+RLL A H R L++ PTRELA+Q VA
Sbjct: 236 KTAAFIIPILERLLYRSRDA------------------HTRVLVLVPTRELAVQCHAVA 276
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ E + ++AL+I PTRELA+Q
Sbjct: 62 KIHTEDQT--------------------IQALVIAPTRELAVQ 84
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 180 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 238
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 239 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 279
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 280 TRQLAQFCNITTCLAVG 296
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 208 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 266
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 267 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 307
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 308 TRQLAQFCNITTCLAVG 324
>gi|366087286|ref|ZP_09453771.1| ATP-dependent RNA helicase [Lactobacillus zeae KCTC 3804]
Length = 502
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+K+I + GF+E+T I IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ +KA + ++ AL+I+PTRELA+Q
Sbjct: 62 HI----DKADRSIQ----------------ALVISPTRELAIQ 84
>gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 440
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 16 PDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDV 75
PD A + + E + + ++ +L L P L+ ++ L ++ T+I ++ IPA+ DV
Sbjct: 4 PDPATQATITTVEKAPQLKSFADLGLIPELLATLDALAYQSPTAIQQSTIPAVIAG-SDV 62
Query: 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135
+G A T SGKT AF LP +Q L K+AK + ++ +LI+ PTREL
Sbjct: 63 LGGAITGSGKTAAFALPIIQLL----AKSAKQTRQ----------SNYVSSLILVPTREL 108
Query: 136 ALQV---LMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGED 185
A QV M + ++K N LA+ G N + ++ +GG D
Sbjct: 109 AQQVADSFMRYAQNIKPNLKVLAVYGGV-----------STNSQMQSLRGGAD 150
>gi|68489575|ref|XP_711406.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
gi|68489673|ref|XP_711358.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
gi|74656107|sp|Q59NP8.1|SPB42_CANAL RecName: Full=ATP-dependent rRNA helicase SPB42
gi|46432654|gb|EAK92127.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
gi|46432705|gb|EAK92176.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
Length = 631
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 30 STEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
+TE AW LR LHP + ++I +G+ T + + IP L+ KDV+ A T SGKT
Sbjct: 4 NTESLAWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147
+F +P LQ++ + K + G+ E +GH+ +++++PTRELA Q+ V + L
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQSVFNQVL 117
Query: 148 K 148
+
Sbjct: 118 Q 118
>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 483
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 25/160 (15%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
++ +E+ NE E E ++++L + +++SI +LG+++ T I + +P L Q++D+I
Sbjct: 81 NEQKEDDTNENE-QNEITSFSQLNICEEVLQSIKELGWEKPTLIQQKVLP-LVFQKRDII 138
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
G +ET SGKT F +P LQ L KY K ALII+PTREL
Sbjct: 139 GLSETGSGKTACFIIPILQEL-------------------KY-KKQSFFALIISPTRELC 178
Query: 137 LQVLMVASPSLKSNSL--TLAMAAGSPLLTSEHSNRRKPN 174
+Q+ A +L SN L + G ++T + +KPN
Sbjct: 179 IQIAQNAQ-ALGSNLLINICTIFGGVDIVTQSLNLAKKPN 217
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RIEEAT-------IQALVIAPTRELAVQ 84
>gi|401882105|gb|EJT46378.1| hypothetical protein A1Q1_05025 [Trichosporon asahii var. asahii
CBS 2479]
gi|406700847|gb|EKD04009.1| hypothetical protein A1Q2_01683 [Trichosporon asahii var. asahii
CBS 8904]
Length = 558
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 21/143 (14%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
DDA NE E ++ L+L + SI ++GF+ T + IP L KDV+
Sbjct: 55 DDAPNGASNEYERV----PFSSLQLSRPTIDSIARMGFETMTEVQARTIPPLL-AGKDVL 109
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
GAA T SGKT AF +PA++ L + R + P +II+PTRELA
Sbjct: 110 GAARTGSGKTMAFLVPAVEMLHQLR----------------FKPANGTGVIIISPTRELA 153
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
LQ+L V ++ +S T + G
Sbjct: 154 LQILGVVKDLMQGHSQTFGIVMG 176
>gi|429855665|gb|ELA30611.1| ATP-dependent RNA helicase mak5 [Colletotrichum gloeosporioides
Nara gc5]
Length = 749
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W +L L P ++ +I KL F + ++I K+ IP + DVIG A T SGKT AF +P ++
Sbjct: 192 WIDLGLSPAIVSAIAKLKFTKPSNIQKSSIPEILAGH-DVIGKASTGSGKTLAFSIPIVE 250
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+E K + GE+ ++AP ALI++PTRELA Q+
Sbjct: 251 DWIE------KFDAKDGEKDTEHAPT----ALILSPTRELAHQI 284
>gi|418029930|ref|ZP_12668447.1| hypothetical protein LDBUL1632_01241 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354688393|gb|EHE88432.1| hypothetical protein LDBUL1632_01241 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 476
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 23/96 (23%)
Query: 45 LMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPALQRL-LEERE 102
++K+I + GF+E+T I IP ALA Q DVIG A+T +GKT AFGLP LQ+L L+++E
Sbjct: 5 ILKAIKRSGFEEATPIQAQTIPLALAGQ--DVIGQAQTGTGKTAAFGLPILQKLDLDKQE 62
Query: 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+A ++A++I PTRELA+Q
Sbjct: 63 QA-------------------IQAIVIEPTRELAIQ 79
>gi|410898437|ref|XP_003962704.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Takifugu
rubripes]
Length = 739
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T+ AW +L + ++K++ LGF T I +P+ KD++GAAET SGKT AFG
Sbjct: 154 TDVSAWKDLFVPAPVLKALSSLGFGSPTPIQALTLPSAIRDHKDILGAAETGSGKTLAFG 213
Query: 91 LPALQRLLEEREKAAKMLEEKGE 113
+P + +LE ++ +A+++E+ E
Sbjct: 214 IPMIHTILEWKKNSAELVEDNIE 236
>gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 606
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L ++I +GFK T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 129 FAELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIE 187
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L + R + P+ ++++PTRELALQ+ VA ++ +S T
Sbjct: 188 MLSQLR----------------FKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFG 231
Query: 156 MAAGSPLLTSEHSNRRK 172
+ G ++E RK
Sbjct: 232 ICIGGANRSAEADKLRK 248
>gi|353234580|emb|CCA66604.1| related to ATP-dependent helicase involved in rRNA processing
[Piriformospora indica DSM 11827]
Length = 571
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 26/133 (19%)
Query: 12 VGNGPDDAQEELVNEAEIST---EFDAWN--ELRLHPLLMKSIYKLGFKESTSILKARIP 66
+G+ P A + +V + I + E DA N EL +HP L+ S+ + + T + A IP
Sbjct: 77 LGSRPSKAGKGVVTQRAIPSAEKEEDAVNFAELGVHPDLVTSLANMSIRRPTPVQAACIP 136
Query: 67 ALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126
AL Q D IG A+T SGKT AF +P LQ+L+++ P G + A
Sbjct: 137 ALL-QGLDCIGNAKTGSGKTVAFAIPILQQLMKD-------------------PYG-IYA 175
Query: 127 LIINPTRELALQV 139
LI+ PTRELA Q+
Sbjct: 176 LILTPTRELAFQI 188
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 17/146 (11%)
Query: 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89
S E ++ + L ++KS+ LGF T I A IP +A KDV+G A T SGKT AF
Sbjct: 204 SEEHSSFLSMNLSRPIIKSLTTLGFNTPTPIQAATIP-VALLGKDVVGNAVTGSGKTAAF 262
Query: 90 GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP-SLK 148
+P L+RL M ++G++A R L++ PTRELA+Q V + +
Sbjct: 263 IIPMLERL---------MYRDRGKKA------AATRCLVLVPTRELAVQCFEVGTKLAAH 307
Query: 149 SNSLTLAMAAGSPLLTSEHSNRRKPN 174
++ + + G L E S R +P+
Sbjct: 308 TDIRSCLVVGGLSLKAQEASLRTRPD 333
>gi|367000838|ref|XP_003685154.1| hypothetical protein TPHA_0D00770 [Tetrapisispora phaffii CBS 4417]
gi|357523452|emb|CCE62720.1| hypothetical protein TPHA_0D00770 [Tetrapisispora phaffii CBS 4417]
Length = 605
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W+ L +L P + ++ +GF E T + + IP A + KDV+ + T SGKT +F +P
Sbjct: 7 WDNLDYQLQPWIRTAVDVMGFDEMTPVQASTIPLFA-RNKDVVVDSITGSGKTVSFVIPI 65
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L++++ E ++K+ KGH +LII+PTRELA Q+
Sbjct: 66 LEKIIIEEANSSKL------------KKGHFHSLIISPTRELAKQI 99
>gi|346327471|gb|EGX97067.1| ATP dependent RNA helicase, putative [Cordyceps militaris CM01]
Length = 852
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
DAQ++ NEA + + W L L P ++ +I KLGF T+I IP + + DVIG
Sbjct: 219 DAQDD-ENEANL----EDWVALNLSPAIVSAIGKLGFTSPTAIQAESIPPI-NAGADVIG 272
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR----ALIINPTR 133
A+T SGKT AFG+P ++R LE +E G+E E R A+I++PTR
Sbjct: 273 KAQTGSGKTLAFGIPIVERWLELHADKDGTDDEDGDEEEAEQDGASSRKGPTAVILSPTR 332
Query: 134 ELALQV 139
ELA Q+
Sbjct: 333 ELAKQI 338
>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 278 TRQLAQFCNITTCLAVG 294
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+L L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNKLNLSADLLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEA-------TIQALVIAPTRELAVQ 84
>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 22/107 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ +L+LHP L++++ +LGF + T I IP ALA +DV+ A T SGKT AF LP L
Sbjct: 3 FADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPALAG--RDVLACAMTGSGKTAAFLLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141
Q+L+ + P+ RAL++ PTRELA Q+ M
Sbjct: 61 QQLIAQ-------------------PRSTTRALVLTPTRELAGQIEM 88
>gi|339251806|ref|XP_003372925.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316968668|gb|EFV52921.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 755
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 44/172 (25%)
Query: 4 TNCATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRL---------HPL-------LMK 47
TNC+ V DD + E + S++ D NE ++ H L +K
Sbjct: 257 TNCSVV------DDD-----IKEVKSSSDVDTNNEEKILASSSTCMHHSLAGIVSEQTLK 305
Query: 48 SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107
+I +GF+ T I IP+L R DV+GAA+T SGKT AF +PA++ L + R
Sbjct: 306 AIRDMGFETMTEIQAQTIPSLLEGR-DVMGAAKTGSGKTLAFLVPAVELLYKLR------ 358
Query: 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
+ P+ ++I+PTREL++Q V LK +S+T + G
Sbjct: 359 ----------FLPRNGTGCIVISPTRELSMQTYGVLIELLKYHSITHGLVIG 400
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ I K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSAELLAEIEKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ E + ++AL+I PTRELA+Q
Sbjct: 62 KIRTE--------------------ESTIQALVIAPTRELAVQ 84
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L LMK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FYELGLSNELMKAIRRMGFEETTPIQAETIP-LSLQNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EA ++ L++ PTRELA+QV
Sbjct: 63 KV------------DVTNEA--------IQGLVVAPTRELAIQV 86
>gi|354546411|emb|CCE43141.1| hypothetical protein CPAR2_207840 [Candida parapsilosis]
Length = 455
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E +L +++SI +LG+ T I +A IP ++ ++ DV+G AET SGKT A+ LP LQ
Sbjct: 31 WKECQLQEPILQSIQELGYITPTPIQRASIP-ISLEKLDVVGVAETGSGKTLAYLLPILQ 89
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L ++ + E+ K ALI+ PTRELALQ+
Sbjct: 90 YL--------SQIDSNYMQFERI--KNQPLALILAPTRELALQI 123
>gi|392542118|ref|ZP_10289255.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 411
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL+LHP L+ +I +LGF+ T I + IP L D+I +A+T +GKT AF LP L
Sbjct: 3 FSELQLHPELLSAITELGFESPTPIQEKSIPLLL-SGFDLIASAQTGTGKTAAFMLPILH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L M +GE++ +RALI+ PTRELA QV
Sbjct: 62 SML--------MGGTQGEKS--------VRALILTPTRELAQQV 89
>gi|345868604|ref|ZP_08820584.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
gi|344046912|gb|EGV42556.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
Length = 413
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 19/107 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L+L L+K+I + G+K+ T + IP + +KDVI +A+T +GKT AF LP L
Sbjct: 2 SFKDLQLIDPLLKAIEEQGYKQPTGVQLQTIPQVL-AKKDVIASAQTGTGKTAAFALPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQV 139
Q L + +E AP+G ++ALI++PTRELALQ+
Sbjct: 61 QLLSKNQE----------------APRGGKTIKALIVSPTRELALQI 91
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L LMK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FYELGLSNELMKAIRRMGFEETTPIQAETIP-LSLQNKDVIGQAQTGTGKTAAFGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EA ++ L++ PTRELA+QV
Sbjct: 63 KV------------DVTNEA--------IQGLVVAPTRELAIQV 86
>gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
PE36]
gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
PE36]
Length = 431
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++ L L+ L+ ++ KLG++ T I IPA+ R D++G A+T +GKT AF LP +
Sbjct: 3 FSALNLNQNLINTVTKLGYETPTPIQAQAIPAILEGR-DIMGGAQTGTGKTAAFALPIIH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L+ E+ A A + K +RALI+ PTREL+ QV
Sbjct: 62 QLMAEQLTA---------NATEPTAKKQIRALILTPTRELSQQV 96
>gi|159114098|ref|XP_001707274.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157435378|gb|EDO79600.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 756
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
+E+ + A++ D W L LHP+L K + + G+ + +I I A H + VI AAE
Sbjct: 92 DEICSLADVEG-IDEWVRLGLHPVLCKYLVRAGYTKPRAIQTQTIRAALHNKSLVI-AAE 149
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
T SGKT A+ LPAL + A K + ++A++ A L+ LII PTRELA Q+
Sbjct: 150 TGSGKTLAYLLPALHKAFTLVTNALK----RPDQAQRRA----LQTLIIAPTRELATQI 200
>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
Length = 572
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
L+K+I +GFK+ T I KA IP + KD+ A T +GKT AF LP L+RL+ + +A
Sbjct: 7 LLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQA 65
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
A R L++ PTREL +QV V + S+T +A G
Sbjct: 66 AVT-----------------RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVG 103
>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 442
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 36/180 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P L++++ L + T+I IPA+ + KDV+G A T SGKT AF LP +Q
Sbjct: 25 FTQLGLMPELLETLKLLSYTTPTAIQSHTIPAVLNG-KDVLGGAITGSGKTAAFALPIIQ 83
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV---LMVASPSLKSNSL 152
++ + + +A + ++ +LI+ PTRELA QV M S +K N
Sbjct: 84 KIAQAKPRAKE--------------GNYVSSLILVPTRELAQQVADSFMRYSQLIKPNLK 129
Query: 153 TLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGED-------EKLDSLKWNPLSQPKTTTLL 205
TLA+ G N + + +GG D +D + N L KTTTL+
Sbjct: 130 TLAVYGGV-----------STNTQMLSLRGGADIVVATPGRLIDLISSNALKLDKTTTLV 178
>gi|336315118|ref|ZP_08570030.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880529|gb|EGM78416.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 438
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L P L++SI LGF + T I + +PA A KD++ +++T SGKT A+ LP +Q
Sbjct: 3 FHDLALDPRLVRSIQHLGFAQPTPIQQEAVPA-AMTGKDLMVSSQTGSGKTLAYLLPMMQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RLL R + K RALI+ PTRELA QV + + LT A
Sbjct: 62 RLLRSRPLS----------------KQDARALILVPTRELAHQVYAKLRLFVANTPLTSA 105
Query: 156 MAAG 159
+ G
Sbjct: 106 LIVG 109
>gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z]
gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
130Z]
Length = 440
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P L+K++ K G+ T+I + IP +A + +D++G+A T +GKT AF LPALQ
Sbjct: 6 FDDFDLAPELLKALAKKGYDRPTAIQQESIP-VAMEEQDLLGSAPTGTGKTAAFLLPALQ 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ K G R L++ PTRELA+QV A + L++A
Sbjct: 65 HLLDYPRKKP----------------GAPRILVLTPTRELAMQVAEQAGELAQFTKLSIA 108
Query: 156 MAAG 159
G
Sbjct: 109 TITG 112
>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
Length = 656
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++L LHP + ++I K G+ + T + K IP L QR+DV+ A+T SGKT AF +P +
Sbjct: 107 SFDDLALHPWVQENIRKSGYSKPTPVQKYSIPTLM-QRRDVMSCAQTGSGKTAAFLIPLI 165
Query: 95 QRLLEEREKAAK--MLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++L A + L G A ALI+ PTRELA+Q
Sbjct: 166 NQILRNGPDAIRPPQLMNNGRRAMFPV------ALILAPTRELAMQ 205
>gi|119193909|ref|XP_001247558.1| hypothetical protein CIMG_01329 [Coccidioides immitis RS]
gi|118574275|sp|Q1E7Y4.1|MAK5_COCIM RecName: Full=ATP-dependent RNA helicase MAK5
gi|392863201|gb|EAS36075.2| ATP-dependent RNA helicase MAK5 [Coccidioides immitis RS]
Length = 783
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L +E E + AW+ L L L S+ +L F T I A IPA+ Q DVIG A T
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTRAFGLPALQRLLEERE--KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFG+P ++ L + +A EE+ E ALI++PTRELA Q+
Sbjct: 238 SGKTLAFGIPIVEYFLGKYRGGRAPTASEERESTKEPM-------ALILSPTRELAHQL 289
>gi|109095726|ref|XP_001086008.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Macaca mulatta]
Length = 406
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 25/126 (19%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+ P +A + ++ E E T + +L + +L ++ +LG+ + T IL IP LA Q +
Sbjct: 8 DSPTEASQPVMEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKILIEAIP-LALQGR 62
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D+IG AET SGKT AF LP L LLE ++ L AL++ PTR
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTR 102
Query: 134 ELALQV 139
ELA Q+
Sbjct: 103 ELAFQI 108
>gi|383790086|ref|YP_005474660.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383106620|gb|AFG36953.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 587
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 22/105 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+N+L L P L+ +I GF+ T I IP L ++ +DV G A+T +GKT AFGLP LQ
Sbjct: 4 FNDLGLIPDLLDAISARGFEIPTPIQAEMIPFLLNEDRDVTGLAQTGTGKTAAFGLPILQ 63
Query: 96 RL-LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L LE R +ALI+ PTREL +QV
Sbjct: 64 KLDLETRST---------------------QALILAPTRELGMQV 87
>gi|405980982|ref|ZP_11039311.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
gi|404393001|gb|EJZ88058.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
Length = 576
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 25/128 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L L++++ KLGF+ T I +A IPAL ++DV+G A+T +GKT AFGLP L
Sbjct: 6 FADLSLPSYLLEAVQKLGFENPTPIQEAAIPALL-AKQDVVGIAQTGTGKTAAFGLPLLA 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ--VLMVASPSLKSNSLT 153
+ GE ++AL++ PTRELALQ + A S ++
Sbjct: 65 HV-------------DGE---------GVQALVLAPTRELALQSASAIGAFASAAKDTNV 102
Query: 154 LAMAAGSP 161
+A+ GSP
Sbjct: 103 VAVYGGSP 110
>gi|379699004|ref|NP_001243975.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
gi|373882595|gb|AEY78647.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
Length = 605
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 17 DDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVI 76
D+ Q E N + A+ + L ++K I K G+K+ T I + IP +A KDV+
Sbjct: 20 DEPQNEPKNNQKKKKSSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIP-IALTGKDVV 78
Query: 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
A T SGKT F LP L++LL K P +LRALI++PTRELA
Sbjct: 79 AMARTGSGKTACFVLPILEKLLVPNNKPT--------------PGKNLRALILSPTRELA 124
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
LQ L K LT A G
Sbjct: 125 LQTLRFVRELGKFTGLTSAAILG 147
>gi|334143126|ref|YP_004536282.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333964037|gb|AEG30803.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 443
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 17/104 (16%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L LHP L+++I G+ + T+I +A IP L +D++ AA+T +GKT F LP L
Sbjct: 3 FDQLALHPALVQAIADEGYTQPTAIQQAAIP-LVLAGEDLMAAAQTGTGKTAGFTLPLLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL + G+ A+ +RALI+ PTRELA QV
Sbjct: 62 RL------------QSGDAAK----PNQVRALILTPTRELAAQV 89
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NE L L+ + K GF E++ I + IP LA + KDVIG A+T +GKT AFGLP L+
Sbjct: 3 FNEFNLSADLLAEVDKAGFVEASPIQEQTIP-LALEGKDVIGQAQTGTGKTAAFGLPTLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ + EEA ++AL+I PTRELA+Q
Sbjct: 62 KI-------------RTEEAT-------IQALVIAPTRELAVQ 84
>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 605
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL+L P ++K++++ G+ T I IPA+ + D++G A+T +GKT AF LP L
Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVL-EGHDLLGGAQTGTGKTAAFTLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L R K+ G +RAL++ PTRELA QV
Sbjct: 62 KLTMSRSA-----------TNKFGGVG-IRALVLTPTRELAAQV 93
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L P ++++I +LGF+E+T I IP +A +D+IG A+T +GKT AFGLP +
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIP-IALTGRDMIGQAQTGTGKTAAFGLPLIH 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E E+ + +LI+ PTRELA+QV
Sbjct: 63 KIAKEEER--------------------IVSLIMTPTRELAIQV 86
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L ++ S+ LG+++ + I A IP L R DV+G A+T +GKT AF LPAL
Sbjct: 22 FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGR-DVVGLAQTGTGKTAAFALPALS 80
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS--NSLT 153
R+ E A+ P + L++ PTRELALQV + K N
Sbjct: 81 RM--------------AELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTV 126
Query: 154 LAMAAGSP 161
L + GSP
Sbjct: 127 LPVYGGSP 134
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 10/104 (9%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P L++++ +LG++E T I +A IP L DV+G A T +GKT AF LP L
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDG-CDVVGQAATGTGKTAAFALPVLH 76
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R + + E+ E+G A++ A A+++ PTRELA QV
Sbjct: 77 R-IRDGERG-----ERGARAQRGAAPS---AVVLVPTRELAAQV 111
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
EF A+ L P + ++I GF +T I A IP LA + KDV+G A T +GKT AFG+
Sbjct: 2 EFSAFT---LRPEVAQAIQAKGFTTATPIQAAAIP-LALEGKDVLGQARTGTGKTLAFGI 57
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P RL RE+ AP RALI+ PTRELALQV
Sbjct: 58 PIANRLDAARERG-------------RAP----RALILTPTRELALQV 88
>gi|317138177|ref|XP_001816731.2| ATP-dependent RNA helicase has1 [Aspergillus oryzae RIB40]
gi|91206843|sp|Q2UUN6.2|HAS1_ASPOR RecName: Full=ATP-dependent RNA helicase has1
gi|391869999|gb|EIT79187.1| ATP-dependent RNA helicase pitchoune [Aspergillus oryzae 3.042]
Length = 596
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L MK I +GF+ T + + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 121 FTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGR-DVLGAAKTGSGKTLSFLIPAIE 179
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ A+I++PTRELALQ+ L +S T
Sbjct: 180 ML----------------SALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYG 223
Query: 156 MAAG 159
+ G
Sbjct: 224 IVIG 227
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D + ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 309 EDASQYDENLTFQDMNLSRPLLKAITTMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 367
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 368 KTAAFALPVLERLI-------------------YKPRQAPITRVLVLVPTRELGIQVHSV 408
Query: 143 ASPSLKSNSLTLAMAAG 159
+ +++T +A G
Sbjct: 409 TKQLAQFSTVTTCLAVG 425
>gi|326478694|gb|EGE02704.1| ATP-dependent RNA helicase has1 [Trichophyton equinum CBS 127.97]
Length = 568
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++L L +K+I +GF T I + IP +LA +D++GAA+T SGKT AF +PA+
Sbjct: 92 FSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLA--GRDILGAAKTGSGKTLAFLIPAV 149
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ALII PTRELALQ+ VA ++ +S T
Sbjct: 150 EIL----------------RSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTY 193
Query: 155 AMAAGSPLLTSEHSNRR----KPNKRKRTRKGGEDEKLDSLK 192
+ G +NRR K NK G LD L+
Sbjct: 194 GVVIGG-------ANRRAEAEKLNKGVNVLIGTPGRLLDHLR 228
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L++S+ K+GF+E+T I IP A Q KD+IG A+T +GKT AFGLP L+
Sbjct: 16 FRELGLSDSLLQSVEKMGFEEATPIQAETIPH-ALQGKDIIGQAQTGTGKTAAFGLPLLE 74
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ +E ++ ++I PTRELA+QV
Sbjct: 75 KVDTNKEM--------------------VQGIVIAPTRELAIQV 98
>gi|398412610|ref|XP_003857625.1| ATP-dependent RNA helicase HAS1 [Zymoseptoria tritici IPO323]
gi|339477510|gb|EGP92601.1| hypothetical protein MYCGRDRAFT_65342 [Zymoseptoria tritici IPO323]
Length = 638
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L MK+I + F T I + IP L R DV+GAA+T SGKT AF +PA++
Sbjct: 164 FTELNLSERTMKAINGMPFDTMTEIQRRGIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIE 222
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L R + P+ ++++PTRELALQ+ VA +++++ T
Sbjct: 223 MLYSLR----------------FKPRNGTGVIVVSPTRELALQIFGVARELMENHTQTYG 266
Query: 156 MAAG 159
+ G
Sbjct: 267 IVIG 270
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 21/143 (14%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+A E NE S FD++ LHP +++++ + G+ + T I A IP + DV+G
Sbjct: 3 EASEAPANE---SVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVT-AGHDVMG 55
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELA 136
AA+T +GKT F LP + LL + +A +P H +RALI+ PTRELA
Sbjct: 56 AAQTGTGKTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELA 102
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
QV + K +L A+ G
Sbjct: 103 DQVYDNVAKYAKYTALRSAVVFG 125
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPA-LAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L P L++ + LG+ + T I IPA LA Q D++ A+T SGKT AF LP L
Sbjct: 13 FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQ--DIMAGAQTGSGKTAAFSLPIL 70
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH-------LRALIINPTRELALQV 139
+L E + L+EK ++ E AP +RAL++ PTRELALQV
Sbjct: 71 HKLTEPLLR----LDEKNQQ-ESEAPSCSQVPAIRAIRALVLTPTRELALQV 117
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 21/143 (14%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+A E NE S FD++ LHP +++++ + G+ + T I A IP + DV+G
Sbjct: 8 EASEAPANE---SVTFDSFG---LHPDVLRALTESGYTKPTPIQAAAIPVVT-AGHDVMG 60
Query: 78 AAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELA 136
AA+T +GKT F LP + LL + +A +P H +RALI+ PTRELA
Sbjct: 61 AAQTGTGKTAGFSLPIIHNLLPDANTSA-------------SPARHPVRALILTPTRELA 107
Query: 137 LQVLMVASPSLKSNSLTLAMAAG 159
QV + K +L A+ G
Sbjct: 108 DQVYDNVAKYAKYTALRSAVVFG 130
>gi|430377535|ref|ZP_19431668.1| DEAD/DEAH box helicase [Moraxella macacae 0408225]
gi|429540672|gb|ELA08701.1| DEAD/DEAH box helicase [Moraxella macacae 0408225]
Length = 382
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGL 91
F +++L LHP L+K+I KLG+ + T I +P LA Q D IG A+T +GKT F L
Sbjct: 2 FQLFSQLPLHPALLKAIVKLGYTQLTPIQSQILPHTLAGQ--DAIGQAQTGTGKTATFLL 59
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ LL K K ++ E+Y G R+LI+ PTRELA Q+
Sbjct: 60 TIINELLTNPLK-------KDQDGERYL--GETRSLILAPTRELAQQI 98
>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis KC583]
gi|421760972|ref|ZP_16197779.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
protein [Bartonella bacilliformis KC583]
gi|411173805|gb|EKS43846.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
Length = 471
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+ + +L L LL+K++ G E I + IP + R D++G A+T SGKT AFGLP
Sbjct: 17 NVFTKLGLSTLLIKNLLNAGISEPKPIQEQAIPVMLKGR-DILGIAQTGSGKTLAFGLPI 75
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT 153
L ++L +K +PK RALI+ PTRELA+Q+ + S +K L+
Sbjct: 76 LSQIL--------------TFGDKRSPKTA-RALILVPTRELAVQIEEMISAVVKGAHLS 120
Query: 154 LAMAAG 159
+ G
Sbjct: 121 TCLIVG 126
>gi|20130173|ref|NP_611467.1| CG9143 [Drosophila melanogaster]
gi|7302399|gb|AAF57487.1| CG9143 [Drosophila melanogaster]
gi|33636633|gb|AAQ23614.1| LD11580p [Drosophila melanogaster]
Length = 813
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 10 VVVGNGPDDAQEELVNEAE----IST----EFDAWNELRLHPLLMKSIYKLGFKESTSIL 61
VV D QE EA IST + AWN L + +++++ + GFK T I
Sbjct: 183 VVKAEDSADQQESTDEEAPELVPISTGEAEDMSAWNGLGVPASILRALGEQGFKTPTQIQ 242
Query: 62 KARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE--------KAAKMLEEKGE 113
+PA H +KD++GAAET SGKT AFG+P L ++E ++ KA K+ ++ E
Sbjct: 243 ALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPE 302
Query: 114 --------------------------EAEKYAPKGH--LRALIINPTRELALQV 139
+AE+ A + L L++ PTRELA+QV
Sbjct: 303 PAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQV 356
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+K + K+GF+E+T I IP + D+IG A+T +GKT AFG+P ++
Sbjct: 4 FRELNLSEALIKGVLKMGFEEATPIQAETIP-VGLSGVDLIGQAQTGTGKTAAFGIPTIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+ A H++AL++ PTRELA+QV
Sbjct: 63 RI--------------------DAKSRHIQALVLAPTRELAIQV 86
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+ ++ L L+K++ LGF TS+ +AR LA KD+ A T +GKT AF LP L
Sbjct: 146 AFTDMNLSRPLLKAVTLLGFTSPTSV-QARTIPLALMGKDICACAATGTGKTAAFMLPIL 204
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMVASPSLKSNSL 152
+RLL Y P R LI+ PTRELA+QV V ++ +
Sbjct: 205 ERLL-------------------YRPTRMRSTRVLILLPTRELAIQVHSVGKALAQNTKI 245
Query: 153 TLAMAAG 159
L +AAG
Sbjct: 246 DLCLAAG 252
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 23/122 (18%)
Query: 20 QEELVNEAEI-STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGA 78
+ E ++A + S E ++ EL L L+K++ LGF + T I IP +A Q KDV +
Sbjct: 98 EREYFDDAPVQSAETSSFQELHLSRPLLKAVSSLGFIKPTVIQSMVIP-VALQGKDVCAS 156
Query: 79 AETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINPTRELA 136
+ T SGKT AF LP L+RLL Y P+ R L++ PTRELA
Sbjct: 157 SRTGSGKTAAFALPILERLL-------------------YRPRRVAATRVLVLTPTRELA 197
Query: 137 LQ 138
+Q
Sbjct: 198 VQ 199
>gi|380486597|emb|CCF38600.1| ATP-dependent RNA helicase DBP10 [Colletotrichum higginsianum]
Length = 853
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I K GF T I + IP L RKDV+G A T SGKT AF +P ++
Sbjct: 43 FQAMGLNANLLRAITKKGFSVPTPIQRKTIP-LILDRKDVVGMARTGSGKTAAFVIPMIE 101
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
RL R +AK+ RALI++P+RELALQ L V K L
Sbjct: 102 RL---RAHSAKV---------------GTRALIMSPSRELALQTLKVVKEFSKGTDLKCI 143
Query: 156 MAAGSPLLTSEHS 168
+ G + + S
Sbjct: 144 LLVGGDSMEDQFS 156
>gi|391229975|ref|ZP_10266181.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391219636|gb|EIP98056.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 602
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K++ K+GF+E++ I A IP L R DV+G + T SGKT AF LPA++
Sbjct: 6 FAELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGR-DVVGQSSTGSGKTAAFALPAIE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R ++ + KA ++ LI+ PTRELA+QV
Sbjct: 65 R-VDPKLKAVQV-------------------LILCPTRELAVQV 88
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+ ++ K+GF+E+T I IP LA + KDVIG A+T +GKT AFGLP L
Sbjct: 3 FKELNLSQELLDAVTKIGFEEATPIQAETIP-LAMEGKDVIGQAQTGTGKTAAFGLPMLD 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
++ K ++ L+I PTRELA+Q
Sbjct: 62 KI--------------------DGKKKQIQGLVIAPTRELAIQ 84
>gi|302653108|ref|XP_003018385.1| hypothetical protein TRV_07579 [Trichophyton verrucosum HKI 0517]
gi|291182028|gb|EFE37740.1| hypothetical protein TRV_07579 [Trichophyton verrucosum HKI 0517]
Length = 948
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 19/125 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++L L +K+I +GF T I + IP +LA +D++GAA+T SGKT AF +PA+
Sbjct: 157 FSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAG--RDILGAAKTGSGKTLAFLIPAV 214
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ALII PTRELALQ+ VA ++ +S T
Sbjct: 215 EIL----------------RSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTY 258
Query: 155 AMAAG 159
+ G
Sbjct: 259 GVVIG 263
>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1165
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
VN + W ++ L M ++ +++ T+I IP +A +D+IG A+T S
Sbjct: 513 VNPDNVPRPVTKWAQMGLLQATMDVFTQVRYEKPTAIQSQAIP-IAESGRDLIGVAKTGS 571
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AFG+P ++ +L++R P LI+ PTREL+LQ++
Sbjct: 572 GKTLAFGIPMIRHILDQR---------------PLKPSDGPIGLILAPTRELSLQIVHEL 616
Query: 144 SPSLKSNSLTLAMAAG 159
P L ++ +T+ A G
Sbjct: 617 KPFLAASGITIKCAYG 632
>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
Length = 437
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL+L L +I KL + E+T I + IP L R D++G A+T +GKT AF LP LQ
Sbjct: 3 FKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGR-DLLGCAKTGTGKTAAFALPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L +E+EKY P+ ++ALI+ PTRELA+Q+
Sbjct: 62 KLYLR------------DESEKY-PRT-IKALILAPTRELAMQI 91
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 22/128 (17%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+GP D + + S +++ EL L L+++ LG+++ T I A IP LA +
Sbjct: 165 SGPVDPSKFFASSEGASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIP-LALTGR 223
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK--GHLRALIINP 131
D+ G+A T SGKT AF LP L+RLL + PK +R LI+ P
Sbjct: 224 DICGSAITGSGKTAAFSLPVLERLL-------------------FRPKRVPAIRVLILTP 264
Query: 132 TRELALQV 139
TRELA QV
Sbjct: 265 TRELAAQV 272
>gi|449145922|ref|ZP_21776717.1| ATP-dependent RNA helicase [Vibrio mimicus CAIM 602]
gi|449078310|gb|EMB49249.1| ATP-dependent RNA helicase [Vibrio mimicus CAIM 602]
Length = 422
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L L P L+ ++ LG T I + IP + Q KDV+ A+T +GKT AFGLP +Q
Sbjct: 8 FSQLGLDPHLLNTLSDLGIVNPTLIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
R +E+ + EE +E +RAL++ PTRELA QVL K L +
Sbjct: 67 RFIEQ----PWVREENSKE---------IRALVLVPTRELAQQVLDSMQAYAKGTELKIV 113
Query: 156 MAAG 159
G
Sbjct: 114 AVYG 117
>gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
Length = 1053
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 20/142 (14%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
TEF EL L ++I +GFK T I + IP L R DV+GAA+T SGKT AF
Sbjct: 574 TEF---AELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGR-DVLGAAKTGSGKTLAFL 629
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
+PA++ L + R + P+ ++++PTRELALQ+ VA ++ +
Sbjct: 630 IPAIEMLSQLR----------------FKPRNGTGVIVVSPTRELALQIFGVARELMEHH 673
Query: 151 SLTLAMAAGSPLLTSEHSNRRK 172
S T + G ++E RK
Sbjct: 674 SQTFGICIGGANRSAEAEKLRK 695
>gi|440288419|ref|YP_007341184.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047941|gb|AGB78999.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 463
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L P ++++I +LG++E T I + IPA+ Q +D++ +A+T +GKT F LP L
Sbjct: 2 SFDSLGLSPEILRAIVELGYREPTPIQQQAIPAVL-QGRDLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q L+ + A KG +RALI+ PTRELA Q+
Sbjct: 61 QHLITTQPHA------KGRRP--------VRALILTPTRELAAQI 91
>gi|365089869|ref|ZP_09328377.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
gi|363416562|gb|EHL23666.1| DEAD/DEAH box helicase domain-containing protein, partial
[Acidovorax sp. NO-1]
Length = 441
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++++ G++ T I IPA+ + D++ A+T +GKT AF LP L
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVM-EGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R L + K+ KG +RAL++ PTRELA QV
Sbjct: 62 R-----------LSQSAAPKNKFGGKG-IRALVLTPTRELAAQV 93
>gi|406603477|emb|CCH45033.1| ATP-dependent rRNA helicase SPB4 [Wickerhamomyces ciferrii]
Length = 591
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 17/117 (14%)
Query: 36 WNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W++L L P + +I LGF+ T + + IP L Q KDVI A T SGKT AF +P
Sbjct: 8 WDQLEYELTPWIKDAISSLGFESMTPVQASTIP-LFSQNKDVIVEAVTGSGKTLAFVIPI 66
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
++R++ K +L + K H A+I++PTREL+LQ+ V LK N
Sbjct: 67 IERIM----KLDPVLIQ----------KRHFNAVIVSPTRELSLQIEKVLQSVLKFN 109
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 12 VGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ 71
+G+ + + ++ E+++ +N L L P L +++ G+ T I IP +
Sbjct: 1 MGDNREQMNDSILEVPEVASAPALFNTLPLDPKLQRAVADQGYASMTPIQAKAIPIVLDG 60
Query: 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131
R DV+GAA+T +GKT AF LP LQ++L K E A + +RAL++ P
Sbjct: 61 R-DVMGAAQTGTGKTAAFSLPLLQKML------------KHENASMSPARHPVRALVLAP 107
Query: 132 TRELALQV 139
TRELA QV
Sbjct: 108 TRELADQV 115
>gi|225443496|ref|XP_002270644.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 709
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W E +L P L+K++ + G+K + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 290 SWVESKLSPELLKAVERAGYKTPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPML 348
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L EE E P A+++ PTRELA Q+
Sbjct: 349 TYI--------SRLPPISEENEAEGPY----AVVMAPTRELAQQI 381
>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 435
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 63/104 (60%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++L+L+P ++K++ G+++ T I + IP + +++D++G A+T +GKT AF +P L
Sbjct: 3 FSQLQLNPSILKALAAAGYEQPTPIQEQSIPYIL-EKRDLLGTAQTGTGKTAAFAVPILD 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L E ++ H+RAL+++PTRELA+Q+
Sbjct: 62 LLCREHGQSTG--------------SRHIRALVLSPTRELAIQI 91
>gi|440472202|gb|ELQ41079.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae Y34]
gi|440478179|gb|ELQ59033.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae P131]
Length = 880
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 20/128 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+P L+++I + GF T I + IP L R+DV+G A T SGKT AF +P ++
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIP-LILDRRDVVGMARTGSGKTAAFVIPMIE 150
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TL 154
RL R +A++ RALI++P+RELALQ L V K L T+
Sbjct: 151 RL---RAHSARV---------------GARALIMSPSRELALQTLKVVKEFGKGTDLKTV 192
Query: 155 AMAAGSPL 162
+ G L
Sbjct: 193 LLVGGDSL 200
>gi|390598971|gb|EIN08368.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 754
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 16/107 (14%)
Query: 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
AW++ + +HP L+++++ GF T I IP A +DV+G AET SGKT A+GLP
Sbjct: 128 AWHKYKDHVHPKLLRALHAQGFNSPTPIQAQVIPE-AGTGRDVVGIAETGSGKTLAYGLP 186
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L LL K + ++ALI+ PTRELALQV
Sbjct: 187 VLTDLLTRSRPKPK-------------SRRAVQALILAPTRELALQV 220
>gi|384491674|gb|EIE82870.1| ATP-dependent RNA helicase HAS1 [Rhizopus delemar RA 99-880]
Length = 765
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 48 SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107
+I L F++ T + IP L R DV+GAA+T SGKT AF +PA++ L
Sbjct: 320 AIKDLAFEKMTEVQARTIPPLMAGR-DVLGAAKTGSGKTLAFLIPAVEMLYRL------- 371
Query: 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
K+ P+ A+I++PTRELALQ+ VA LK + +T + G
Sbjct: 372 ---------KFKPRNGTGAIIVSPTRELALQIFGVAKELLKYHQMTFGIVIG 414
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E L P ++++I ++GF+EST I + IP +A + +D+IG A+T +GKT AFG+P +
Sbjct: 4 FSEFGLEPKVLRAITEMGFEESTPIQEKAIP-VALEGRDLIGQAQTGTGKTAAFGIPLVN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EK ALI+ PTRELA+QV
Sbjct: 63 KIDVKEEKIV--------------------ALIMCPTRELAIQV 86
>gi|392373513|ref|YP_003205346.1| ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
[Candidatus Methylomirabilis oxyfera]
gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Candidatus Methylomirabilis oxyfera]
Length = 479
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 20/105 (19%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ +L+ L+K+++ +GFK T I + +P L R DV+ +A T SGKT AF LP L
Sbjct: 2 SFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGR-DVMASAVTGSGKTAAFLLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+E+ P+G RAL++ PTRELA Q+
Sbjct: 61 HCLMEK-------------------PRGTTRALVLAPTRELAAQI 86
>gi|449486366|ref|XP_002191498.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Taeniopygia guttata]
Length = 757
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I LGFK+ T I KA IP + KD+ A T +G
Sbjct: 170 EDASQYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP-VGLLGKDICACAATGTG 228
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 229 KTAAFILPVLERLI-------------------YKPRQAPITRVLVLVPTRELGIQVHSV 269
Query: 143 ASPSLKSNSLTLAMAAG 159
+ +++T +A G
Sbjct: 270 TKQLAQFSNVTTCLAVG 286
>gi|383826631|ref|ZP_09981754.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
gi|383332437|gb|EID10918.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
Length = 566
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+++L++HP ++++I ++G++ ++I A IPAL DV+G A+T +GKT AF +P L
Sbjct: 14 AFDDLQIHPSVLRAIAEVGYESPSAIQAATIPALMAG-SDVVGLAQTGTGKTAAFAIPIL 72
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R ++ A + AL++ PTRELALQV
Sbjct: 73 SR-IDTTSNATQ-------------------ALVLAPTRELALQV 97
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 24/146 (16%)
Query: 31 TEFDA--WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
T+F + + +L L L+K++ LG+K T I A IP LA +D+ G+A T SGKT A
Sbjct: 169 TKFSSSSFADLNLSRPLLKAVEALGYKTPTPIQAACIP-LALAGRDICGSAVTGSGKTAA 227
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELALQVLMVASPS 146
F LP L+RLL + P+G L++ PTRELA+Q+ +
Sbjct: 228 FALPFLERLL-------------------HRPRGLAATYVLVLTPTRELAVQIHSMIEKL 268
Query: 147 LKSNSLTLAMAAGSPLLTSEHSNRRK 172
+ +T+A+ G L+ + + RK
Sbjct: 269 AQFTDVTVALIVGGLSLSVQAATLRK 294
>gi|241956021|ref|XP_002420731.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223644073|emb|CAX41816.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 556
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 24/150 (16%)
Query: 17 DDAQEELVNEAEIS---TEFDAWNELR----LHPLLMKSIYKLGFKESTSILKARIPALA 69
D+A+ E + + ++S TE D+ N L L M++I ++GF + T + IP L
Sbjct: 75 DEAKLEKLTKPQVSKEITEDDSENVLFENADLSEPTMRAIKEMGFTKMTKVQAKTIPPLL 134
Query: 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129
R DV+GAA+T SGKT AF +PA++ L + K P+ +II
Sbjct: 135 AGR-DVLGAAKTGSGKTLAFLIPAIELLY----------------SLKIKPRNGTAVIII 177
Query: 130 NPTRELALQVLMVASPSLKSNSLTLAMAAG 159
PTRELALQ+ VA ++ +S T + G
Sbjct: 178 TPTRELALQIFGVARELMQFHSQTCGIVIG 207
>gi|194380082|dbj|BAG63808.1| unnamed protein product [Homo sapiens]
Length = 132
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 25/126 (19%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+ P +A + +V E E T + +L + +L ++ +LG+ + T I IP LA Q +
Sbjct: 8 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGR 62
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D+IG AET SGKT AF LP L LLE ++ L AL++ PTR
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTR 102
Query: 134 ELALQV 139
ELA Q+
Sbjct: 103 ELAFQI 108
>gi|389644026|ref|XP_003719645.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
gi|152013475|sp|A4R5B8.1|DBP10_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP10
gi|351639414|gb|EHA47278.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
Length = 914
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 20/128 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+P L+++I + GF T I + IP L R+DV+G A T SGKT AF +P ++
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIP-LILDRRDVVGMARTGSGKTAAFVIPMIE 150
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TL 154
RL R +A++ RALI++P+RELALQ L V K L T+
Sbjct: 151 RL---RAHSARV---------------GARALIMSPSRELALQTLKVVKEFGKGTDLKTV 192
Query: 155 AMAAGSPL 162
+ G L
Sbjct: 193 LLVGGDSL 200
>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
Length = 431
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 16/124 (12%)
Query: 43 PLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102
P ++K++ + G+++ T I + IP LA + D++ A+T +GKT AF LP +Q+LL
Sbjct: 10 PEIVKALTECGYQKLTPIQQKAIP-LARKGHDILANAQTGTGKTAAFALPVIQQLL---- 64
Query: 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
+++K A + RALI+ PTRELA Q+ + + +K SLT+ G
Sbjct: 65 -----------DSKKSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKK 113
Query: 163 LTSE 166
++S+
Sbjct: 114 MSSQ 117
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 19/145 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T+F+ + +L+L +M++I +GF++ T I + IP +A KD+ +A+T SGKT AF
Sbjct: 128 TKFETFADLKLSRPIMRAISHIGFEKPTPIQQRAIP-IALTGKDICASAQTGSGKTAAFL 186
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LP L+R L+ R + + R +II P RELA Q + +
Sbjct: 187 LPILER-LQFRSRRVQ----------------STRVMIICPVRELATQCQSMLEQLARFT 229
Query: 151 SLTLAMAAGS-PLLTSEHSNRRKPN 174
+T ++A G PL E R +P+
Sbjct: 230 DITCSLAVGGLPLKAQEAELRNRPD 254
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P ++K++ + G+ T I IPA+ D++G A+T +GKT AF LP LQ
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAG-GDLLGGAQTGTGKTAAFTLPLLQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL E ++ +G A +RALI+ PTRELA QV
Sbjct: 62 RLSTE----PRLTNRRGVNA--------VRALIMTPTRELAAQV 93
>gi|375096567|ref|ZP_09742832.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374657300|gb|EHR52133.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 568
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 68/123 (55%), Gaps = 25/123 (20%)
Query: 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIG 77
+A E+L N AE + F EL L P L++++ +LG++E T I A IP + Q +D++G
Sbjct: 4 NATEQL-NPAEQTAGF---AELGLRPELLRALSELGYEEPTPIQLAAIPTVL-QGRDLVG 58
Query: 78 AAETESGKTRAFGLPALQRLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136
A T +GKT AF LP LQRL + ER KA AL++ PTRELA
Sbjct: 59 QAATGTGKTAAFALPVLQRLPDGERGKAPS-------------------ALVLVPTRELA 99
Query: 137 LQV 139
QV
Sbjct: 100 AQV 102
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 25/126 (19%)
Query: 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRK 73
+ P +A + ++ E E T + +L + +L ++ +LG+ + T IL IP LA Q +
Sbjct: 8 DSPTEASQPVMEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKILIEAIP-LALQGR 62
Query: 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133
D+IG AET SGKT AF LP L LLE ++ L AL++ PTR
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTR 102
Query: 134 ELALQV 139
ELA Q+
Sbjct: 103 ELAFQI 108
>gi|406900287|gb|EKD43303.1| hypothetical protein ACD_72C00354G0001, partial [uncultured
bacterium]
Length = 345
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L + P +++++ L F T I IPA A + KDV+G A+T +GKT AFG+P +Q
Sbjct: 17 FQSLGIAPRILETLEHLKFTTPTPIQHQSIPA-ALEGKDVVGIAQTGTGKTLAFGIPMVQ 75
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TL 154
RL G + LI+ PTRELALQV + ++N L T
Sbjct: 76 RL----------------------SNGQGQGLILLPTRELALQVAETLTSITRNNGLKTA 113
Query: 155 AMAAGSPLLTSEHSNRRKPN 174
+ G+ + S RR P+
Sbjct: 114 VLIGGASMFMQVQSLRRNPS 133
>gi|386389052|ref|ZP_10073883.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
gi|385696213|gb|EIG26715.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
Length = 445
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
+ E I T F+ E L P L+K++ + G+K TS+ IP A +D++G+A T
Sbjct: 1 MTTETPILTTFE---EFDLSPQLLKALNEKGYKRPTSVQAQTIPH-ALDGRDLLGSAPTG 56
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+GKT AF LPA+Q LL+ + G R LI+ PTRELA+QV
Sbjct: 57 TGKTAAFLLPAIQHLLDYPRRKP----------------GAPRILILTPTRELAMQVAEQ 100
Query: 143 ASPSLKSNSLTLAMAAG 159
A K L++A G
Sbjct: 101 AEALAKFTKLSIATITG 117
>gi|258575119|ref|XP_002541741.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902007|gb|EEP76408.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 777
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L +E E T+ AW+ L L L S+ +L F T I A IPA+ Q DVIG A T
Sbjct: 176 LQDEVEEDTDVSAWDPLGLRAELQTSLARLKFCSPTPIQSACIPAVL-QGHDVIGKASTG 234
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFG+P ++ L + AP ALI++PTRELA Q+
Sbjct: 235 SGKTLAFGIPIVEHYLGRYPTGQAPASSNEDGTSGKAPI----ALILSPTRELAHQL 287
>gi|354543386|emb|CCE40105.1| hypothetical protein CPAR2_101430 [Candida parapsilosis]
Length = 578
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105
MK+I ++GF + T + IP L R DV+GAA+T SGKT AF +PA++ + + K
Sbjct: 124 MKAIREMGFTKMTKVQAKTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELMYSLKIK-- 180
Query: 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159
P+ +II PTRELALQ+ VA ++ +S T + G
Sbjct: 181 --------------PRNGTAVIIITPTRELALQIFGVARQLMEHHSQTCGIVIG 220
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 15/105 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L+P +++++ + G++E T I K IPA+ R D++ +A+T +GKT F LP L
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL++ A KG +RALI+ PTRELA QV
Sbjct: 61 QRLVQNEPHA------KGRRP--------IRALILTPTRELAAQV 91
>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
gi|75320262|sp|Q53RK8.1|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 736
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W+E +L L++++ K G+KE + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 317 WSESKLGTELLRAVEKAGYKEPSPIQMASIP-LGLQQRDVIGIAETGSGKTAAFVLPMLS 375
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L EE E P A+++ PTRELA Q+
Sbjct: 376 YITR--------LPPISEENEAEGPY----AVVMAPTRELAQQI 407
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+ +L+L L +++ +G++ T I IP + Q +DV+GAA+T +GKT AF LP L
Sbjct: 16 AFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVL-QGRDVMGAAQTGTGKTAAFALPLL 74
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
QR+L+ E +P H +RAL++ PTRELA QV
Sbjct: 75 QRMLK-------------HENSSTSPARHPVRALVLLPTRELADQV 107
>gi|356563121|ref|XP_003549814.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine
max]
Length = 575
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 19/131 (14%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+STE ++ L L K+I +GF T I IP L KDV+GAA T SGKT A
Sbjct: 87 MSTE--SFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLL-IGKDVLGAARTGSGKTLA 143
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L K+ P+ ++I PTRELA+Q VA LK
Sbjct: 144 FLIPAVELLYNV----------------KFTPRNGAGVIVICPTRELAIQTHAVAKELLK 187
Query: 149 SNSLTLAMAAG 159
+S TL + G
Sbjct: 188 YHSQTLGLVIG 198
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 20/135 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L P+L+++I ++GF T + IP A +DV+ +A T +GKT AF +PALQ
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQ-ALDGRDVLASAPTGTGKTAAFAIPALQ 63
Query: 96 RLLE-EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
LL+ R KA G R LI+ PTRELA+QV A K+ L +
Sbjct: 64 YLLDFPRRKA-----------------GPARILILTPTRELAMQVAEQAQALAKNTRLNI 106
Query: 155 AMAAGSPLLTSEHSN 169
G + EH++
Sbjct: 107 FTITGG-VQYQEHAD 120
>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
2638]
Length = 400
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 17/104 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++++ + L+ I G++ T + IPA+ Q +DV+G A+T +GKT AF LP L
Sbjct: 2 SFDQFKFDMRLISGIRSAGYEVPTPVQLKAIPAVL-QGRDVMGLAQTGTGKTAAFVLPVL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
QRLL+ EEAEK +G ++ L+++PTRELALQ
Sbjct: 61 QRLLD-------------EEAEK---RGPVKVLVLSPTRELALQ 88
>gi|147774689|emb|CAN74342.1| hypothetical protein VITISV_005473 [Vitis vinifera]
Length = 661
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W E +L P L+K++ + G+K + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 260 SWVESKLSPELLKAVERAGYKTPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPML 318
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L EE E P A+++ PTRELA Q+
Sbjct: 319 TYI--------SRLPPISEENEAEGPY----AVVMAPTRELAQQI 351
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K++ + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K +L
Sbjct: 72 RLLPHASTSA-------------SPARHPVRALILTPTRELADQVAANVQSYAKHTALRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|146345411|sp|Q8JHJ2.2|DDX55_DANRE RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
box protein 55
Length = 593
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 18/106 (16%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W L +LH +++++ +LGF T + A IP L KDV A T SGKT AF +PA
Sbjct: 9 WGSLPVKLHDNILQTLKELGFTYMTPVQSACIP-LFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+ LL+ EK KM + ALII PTRELA+Q+
Sbjct: 68 LEILLKREEKLKKM---------------QVGALIITPTRELAMQI 98
>gi|56201305|dbj|BAD72907.1| unnamed protein product [Drosophila simulans]
gi|56201324|dbj|BAD72925.1| unnamed protein product [Drosophila sechellia]
Length = 814
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 43/163 (26%)
Query: 17 DDAQEELV----NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
D+ ELV +EAE + AWN L + +++++ + GFK T I +PA H +
Sbjct: 198 DEEAPELVSIPTDEAE---DVSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 254
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEERE--------KAAKMLEEKGE----------- 113
KD++GAAET SGKT AFG+P L ++E ++ KA K+ ++ E
Sbjct: 255 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 314
Query: 114 ---------------EAEKYAPKGH--LRALIINPTRELALQV 139
+AE++ + L L++ PTRELA+QV
Sbjct: 315 PEELDHVSGASDEESDAEEHTQRVQTPLYGLVLTPTRELAVQV 357
>gi|27545209|ref|NP_775336.1| ATP-dependent RNA helicase DDX55 [Danio rerio]
gi|21105407|gb|AAM34647.1|AF506203_1 ATP-dependent RNA helicase [Danio rerio]
Length = 593
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 18/106 (16%)
Query: 36 WNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
W L +LH +++++ +LGF T + A IP L KDV A T SGKT AF +PA
Sbjct: 9 WGSLPVKLHDNILQTLKELGFTYMTPVQSACIP-LFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L+ LL+ EK KM + ALII PTRELA+Q+
Sbjct: 68 LEILLKREEKLKKM---------------QVGALIITPTRELAMQI 98
>gi|423685883|ref|ZP_17660691.1| DNA and RNA helicase [Vibrio fischeri SR5]
gi|371495184|gb|EHN70781.1| DNA and RNA helicase [Vibrio fischeri SR5]
Length = 431
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 16/124 (12%)
Query: 43 PLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102
P ++K++ + G+++ T I + IP LA + D++ A+T +GKT AF LP +Q+LL
Sbjct: 10 PEIVKALTECGYQKLTPIQQKAIP-LARKGHDILANAQTGTGKTAAFALPVIQQLL---- 64
Query: 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
+++K A + RALI+ PTRELA Q+ + + +K SLT+ G
Sbjct: 65 -----------DSKKSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKK 113
Query: 163 LTSE 166
++S+
Sbjct: 114 MSSQ 117
>gi|323693154|ref|ZP_08107372.1| hypothetical protein HMPREF9475_02235 [Clostridium symbiosum
WAL-14673]
gi|323502637|gb|EGB18481.1| hypothetical protein HMPREF9475_02235 [Clostridium symbiosum
WAL-14673]
Length = 196
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 15/104 (14%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L+L PLL+K++ + G+ + I + IP + R DV+G A+T +GKT AF LP +Q
Sbjct: 3 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLTGR-DVLGCAQTGTGKTAAFALPIIQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L++ EK KY+ K +R+LI+ PTR+LALQ+
Sbjct: 62 ILMKPSEK-------------KYS-KRVIRSLILTPTRKLALQI 91
>gi|302496482|ref|XP_003010242.1| hypothetical protein ARB_03497 [Arthroderma benhamiae CBS 112371]
gi|291173784|gb|EFE29602.1| hypothetical protein ARB_03497 [Arthroderma benhamiae CBS 112371]
Length = 542
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++L L +K+I +GF T I + IP +LA +D++GAA+T SGKT AF +PA+
Sbjct: 92 FSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLA--GRDILGAAKTGSGKTLAFLIPAV 149
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ALII PTRELALQ+ VA ++ +S T
Sbjct: 150 EIL----------------RSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTY 193
Query: 155 AMAAGSPLLTSEHSNRR----KPNKRKRTRKGGEDEKLDSLK 192
+ G +NRR K NK G LD L+
Sbjct: 194 GVVIGG-------ANRRAEAEKLNKGVNVLIGTPGRLLDHLR 228
>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
gi|74696531|sp|Q7S9J4.1|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
Length = 934
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 19/108 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ + L+ L+++I + GF T I + IP L +RKDV+G A T SGKT AF +P ++
Sbjct: 101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIP-LILERKDVVGMARTGSGKTAAFVIPMIE 159
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
RL KG ++P+ RALI++P+RELALQ L V
Sbjct: 160 RL-------------KG-----HSPRVGSRALIMSPSRELALQTLKVV 189
>gi|83764585|dbj|BAE54729.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 531
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L MK I +GF+ T + + IP L R DV+GAA+T SGKT +F +PA++
Sbjct: 56 FTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGR-DVLGAAKTGSGKTLSFLIPAIE 114
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L A ++ P+ A+I++PTRELALQ+ L +S T
Sbjct: 115 ML----------------SALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYG 158
Query: 156 MAAG 159
+ G
Sbjct: 159 IVIG 162
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+++I +LGF+E+T I + IP +A +D+IG A+T +GKT AFG+P +
Sbjct: 7 FVELGLEPKLLQAITELGFEEATPIQEIAIP-VAMMGRDLIGQAQTGTGKTAAFGIPLIS 65
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ E+ AL++ PTRELA+QV
Sbjct: 66 KIDPSEERVV--------------------ALVMTPTRELAIQV 89
>gi|336470872|gb|EGO59033.1| hypothetical protein NEUTE1DRAFT_60019 [Neurospora tetrasperma FGSC
2508]
gi|350291940|gb|EGZ73135.1| ATP-dependent RNA helicase dbp-10 [Neurospora tetrasperma FGSC
2509]
Length = 934
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 19/109 (17%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+ + L+ L+++I + GF T I + IP L +RKDV+G A T SGKT AF +P +
Sbjct: 100 GFQAMGLNAHLLRAITRKGFSVPTPIQRKAIP-LILERKDVVGMARTGSGKTAAFVIPMI 158
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
+RL KG ++P+ RALI++P+RELALQ L V
Sbjct: 159 ERL-------------KG-----HSPRVGSRALIMSPSRELALQTLKVV 189
>gi|398808043|ref|ZP_10566913.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398088674|gb|EJL79232.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 600
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL+L P ++K++++ G+ T I IPA+ + D++G A+T +GKT AF LP L
Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVL-EGHDLLGGAQTGTGKTAAFTLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L R K+ G +RAL++ PTRELA QV
Sbjct: 62 KLSMSRSA-----------TNKFGGTG-IRALVLTPTRELAAQV 93
>gi|373852215|ref|ZP_09595015.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372474444|gb|EHP34454.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 602
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K++ K+GF+E++ I A IP L R DV+G + T SGKT AF LPA++
Sbjct: 6 FAELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGR-DVVGQSSTGSGKTAAFALPAIE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R ++ + KA ++ LI+ PTRELA+QV
Sbjct: 65 R-VDPKLKAVQV-------------------LILCPTRELAVQV 88
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 19/145 (13%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
T F+ + +L+L +M++I +GF++ T I + IP +A KD+ +A+T SGKT AF
Sbjct: 146 TRFETFADLKLSRPIMRAISHIGFEKPTPIQQRAIP-IALTGKDICASAQTGSGKTAAFL 204
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LP L+R L+ R + + R +II P RELA Q + +
Sbjct: 205 LPILER-LQFRSRRVQ----------------STRTMIICPVRELATQCQSMFEQLARFT 247
Query: 151 SLTLAMAAGS-PLLTSEHSNRRKPN 174
+T ++A G PL E R +P+
Sbjct: 248 DITCSLAVGGLPLKAQEAELRNRPD 272
>gi|156379137|ref|XP_001631315.1| predicted protein [Nematostella vectensis]
gi|156218353|gb|EDO39252.1| predicted protein [Nematostella vectensis]
Length = 298
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 22/130 (16%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
L+K++ +LGF T I + IP +A KDV A T +GKT AF LP L+RLL
Sbjct: 7 LLKAVNELGFLHPTPIQASTIP-VALMGKDVCACAATGTGKTAAFMLPILERLL------ 59
Query: 105 AKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162
Y P +R L+I PTRELA+Q+ V + K ++ + +AAG
Sbjct: 60 -------------YRPTQSPAIRVLVITPTRELAIQIHSVTNNLSKYTNIQVCLAAGGLD 106
Query: 163 LTSEHSNRRK 172
L S+ + RK
Sbjct: 107 LKSQEAALRK 116
>gi|241253045|ref|XP_002403786.1| RNA helicase, putative [Ixodes scapularis]
gi|215496560|gb|EEC06200.1| RNA helicase, putative [Ixodes scapularis]
Length = 463
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGL 91
+ AW + ++K++ +L F + T I +P+ DV+GAAET SGKT AFG+
Sbjct: 59 DMSAWLNCYVPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDVMGAAETGSGKTLAFGI 118
Query: 92 PALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
P L + E++ + P L+AL++ PTRELA+QV
Sbjct: 119 PILHHIAEQKARIGD------------GPMS-LQALVLTPTRELAIQV 153
>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 591
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 27/107 (25%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K++ K+GF+E++ I IP L DV+G ++T SGKT AF +PA++
Sbjct: 6 FTELGLSPELLKAVAKMGFEEASPIQSETIPQLLTG-ADVVGLSQTGSGKTAAFAIPAIE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRA---LIINPTRELALQV 139
R+ G+LRA LI+ PTRELA+QV
Sbjct: 65 RV-----------------------DGNLRAPQVLILCPTRELAMQV 88
>gi|443720455|gb|ELU10207.1| hypothetical protein CAPTEDRAFT_141736, partial [Capitella teleta]
Length = 616
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 24 VNEAEISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAE 80
++ +E T +D A+ ++ L L+K+I +GF + T I A IP +A KD+ A
Sbjct: 21 ISYSEEVTSYDDSVAFPDMNLSRPLLKAIANMGFTQPTPIQGATIP-VALLGKDICACAA 79
Query: 81 TESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQ 138
T +GKT AF LP L+RLL Y P+ R L++ PTRELA+Q
Sbjct: 80 TGTGKTAAFLLPVLERLL-------------------YRPRQAPVTRVLVLTPTRELAVQ 120
Query: 139 VLMVASPSLKSNSLTLAMAAG 159
+ VA + ++ +++AG
Sbjct: 121 IHTVARQLTQFTNIETSLSAG 141
>gi|327306545|ref|XP_003237964.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
gi|326460962|gb|EGD86415.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
Length = 565
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++L L +K+I +GF T I + IP +LA +D++GAA+T SGKT AF +PA+
Sbjct: 89 FSDLSLSEPTVKAISGMGFTTMTEIQQRGIPPSLA--GRDILGAAKTGSGKTLAFLIPAV 146
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ALII PTRELALQ+ VA ++ +S T
Sbjct: 147 EIL----------------RSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTY 190
Query: 155 AMAAGSPLLTSEHSNRR----KPNKRKRTRKGGEDEKLDSLK 192
+ G +NRR K NK G LD L+
Sbjct: 191 GVVIGG-------ANRRAEAEKLNKGVNVLIGTPGRLLDHLR 225
>gi|308161422|gb|EFO63871.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 756
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 2 FHTNCATVVVVGNGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSIL 61
F N V+ N + +E+ + A++ D W L LHP+L K + + G+ + +I
Sbjct: 73 FPENELNVMADHNYKQEFVDEICSLADVEG-IDEWFRLGLHPVLCKYLVRAGYTKPRAIQ 131
Query: 62 KARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK 121
I A H + VI AAET SGKT A+ LPAL + A K + ++A++ A
Sbjct: 132 TQTIRAALHGKSLVI-AAETGSGKTLAYLLPALHKAFTLVTNALK----RPDQAQRRA-- 184
Query: 122 GHLRALIINPTRELALQV 139
L+ LII PTRELA Q+
Sbjct: 185 --LQTLIIAPTRELATQI 200
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL + +A +P H +RALI+ PTRELA QV K SL
Sbjct: 72 RLLPQASTSA-------------SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|395752428|ref|XP_003779421.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 2
[Pongo abelii]
Length = 796
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 28 EISTEFD---AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E ++++D ++ ++ L L+K+I +GFK+ T I KA IP + KD+ A T +G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP-VGLLGKDICACAATGTG 236
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH--LRALIINPTRELALQVLMV 142
KT AF LP L+RL+ Y P+ R L++ PTREL +QV V
Sbjct: 237 KTAAFALPVLERLI-------------------YKPRQAPVTRVLVLVPTRELGIQVHSV 277
Query: 143 ASPSLKSNSLTLAMAAG 159
+ ++T +A G
Sbjct: 278 TRQLAQFCNITTCLAVG 294
>gi|356567698|ref|XP_003552054.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine
max]
Length = 542
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+STE +++ L L K+I +GF T I IP L RKDV+GAA T +GKT A
Sbjct: 74 MSTE--SFSSLGLSEPTSKAIADMGFHRMTQIQAKAIPPLL-TRKDVLGAARTGAGKTLA 130
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L + ++ P+ ++I PTRELA+Q VA LK
Sbjct: 131 FLVPAVELLY----------------SIQFTPRNGTGVVVICPTRELAIQTHAVAKELLK 174
Query: 149 SNSLTLAMAAG 159
+S TL + G
Sbjct: 175 YHSQTLGLVIG 185
>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
gypseum CBS 118893]
gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
gypseum CBS 118893]
Length = 1183
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V ++ T W++ L + I KLG++ TSI +PA+ R DVIG A+T S
Sbjct: 540 VRGVDVPTPVQKWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGR-DVIGVAKTGS 598
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP + + ++R LE +G + +LI+ PTRELA Q+
Sbjct: 599 GKTIAFLLPMFRHIRDQRP-----LENM---------EGPI-SLIMTPTRELATQIHREC 643
Query: 144 SPSLKSNSLTLAMA-AGSPL 162
P LK+ +L A G+P+
Sbjct: 644 RPFLKALNLRAVCAYGGAPI 663
>gi|310800598|gb|EFQ35491.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 777
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 16 PDDAQEEL--------VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA 67
PDDA+ E V +A+ + W +L L P L+ +I KL F + T+I + IP
Sbjct: 179 PDDAKLESSGFAALEEVQDADEDLDMTPWVDLGLSPALVAAIAKLKFAKPTNIQSSTIPD 238
Query: 68 LAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127
+ DVIG A T SGKT AF +P ++ +++ + GE K P AL
Sbjct: 239 ILAGH-DVIGKASTGSGKTLAFSIPIVEEWVDKHDGDGNA---DGERPSK--PDNTPFAL 292
Query: 128 IINPTRELALQV 139
I++PTRELA Q+
Sbjct: 293 ILSPTRELAHQI 304
>gi|195336062|ref|XP_002034666.1| GM19796 [Drosophila sechellia]
gi|194126636|gb|EDW48679.1| GM19796 [Drosophila sechellia]
Length = 814
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 43/163 (26%)
Query: 17 DDAQEELV----NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
D+ ELV +EAE + AWN L + +++++ + GFK T I +PA H +
Sbjct: 198 DEEAPELVSIPTDEAE---DVSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 254
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEERE--------KAAKMLEEKGE----------- 113
KD++GAAET SGKT AFG+P L ++E ++ KA K+ ++ E
Sbjct: 255 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 314
Query: 114 ---------------EAEKYAPKGH--LRALIINPTRELALQV 139
+AE++ + L L++ PTRELA+QV
Sbjct: 315 PEELDHVSGASDEESDAEEHTQRVQTPLYGLVLTPTRELAVQV 357
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 14 NGPD-DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR 72
NG D D E NE + E W +L L+ L ++ +L +K + I + IP +A Q
Sbjct: 50 NGDDADDSSEAENEDQDENEKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIP-VALQG 108
Query: 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132
KDVIG AET SGKT AF LP L LLE ++ AL++ PT
Sbjct: 109 KDVIGLAETGSGKTGAFALPILHALLENPQR--------------------FFALVLTPT 148
Query: 133 RELALQV 139
RELA Q+
Sbjct: 149 RELAFQI 155
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90
++ A++ L L P ++ ++ + G+ + I IP + R DV A T +GKT AF
Sbjct: 11 SDIPAFDTLGLDPRIVANVARAGYATPSPIQALAIPPIRDGR-DVEALARTGTGKTAAFA 69
Query: 91 LPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150
LP + RLL AA P G +RALI++PTRELA Q ++
Sbjct: 70 LPVIHRLLTGAGGAAP-----------SGPPGAVRALILSPTRELASQTAGTVRTCIRGC 118
Query: 151 SLTLAMAAG 159
LT+A+A G
Sbjct: 119 GLTVALAIG 127
>gi|456864614|gb|EMF83013.1| DEAD/DEAH box helicase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 533
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L + +I ++GF+E++ I IP + +RKD+IG A+T +GKT AF +P ++
Sbjct: 6 FSELNLSAEIQNAIQEMGFEEASPIQSEAIPVIL-KRKDIIGHAQTGTGKTAAFAIPTIE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE K HL+ALI+ PTREL +QV
Sbjct: 65 -LLEVESK-------------------HLQALILCPTRELVIQV 88
>gi|315047684|ref|XP_003173217.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
gi|311343603|gb|EFR02806.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
Length = 567
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++L L +K+I +GF T I + IP +LA +D++GAA+T SGKT AF +PA+
Sbjct: 90 FSDLSLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAG--RDILGAAKTGSGKTLAFLIPAV 147
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL 154
+ L + K+ P+ ALII PTRELALQ+ VA ++ +S T
Sbjct: 148 EIL----------------RSLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTY 191
Query: 155 AMAAGSPLLTSEHSNRR----KPNKRKRTRKGGEDEKLDSLK 192
+ G +NRR K NK G LD L+
Sbjct: 192 GVVIGG-------ANRRAEAEKLNKGVNVLIGTPGRLLDHLR 226
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 15/106 (14%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++ L L L +++ ++G++ T I + IP + Q KDV+GAA+T +GKT AF LP L
Sbjct: 4 SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVL-QGKDVMGAAQTGTGKTAAFSLPLL 62
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQV 139
QR+++ E +P H +RAL++ PTRELA+QV
Sbjct: 63 QRMMK-------------HENPSTSPARHPVRALVLLPTRELAVQV 95
>gi|384247532|gb|EIE21018.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 460
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 25/117 (21%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILK-ARIPALAHQRKDVIGAAETE 82
V+ A++S AW L L P ++ +I LGF E T I + +PA+ R+DVIGAA+T
Sbjct: 35 VSAADVS----AWEGLGLGPGVLGAIGGLGFGEPTPIQRECLLPAI-RDRRDVIGAAQTG 89
Query: 83 SGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFGLP LQ KG + G LRALI+ PTRELA+QV
Sbjct: 90 SGKTLAFGLPILQL--------------KGRKG-----GGLLRALILAPTRELAMQV 127
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 23/118 (19%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E+ L P + K+I+ +GF+E + I IP + Q KD+IG A+T +GKT FG+P
Sbjct: 20 FGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIM-QGKDLIGQAQTGTGKTATFGIPM-- 76
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPK-GHLRALIINPTRELALQVLMVASPSLKSNSL 152
AE P+ G ++AL++ PTRELA+QV S + N L
Sbjct: 77 -------------------AETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDL 115
>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 533
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL L PL++KS+ G++ +T + + IPA A D++ ++ T SGKT AF LP++
Sbjct: 2 SFSELGLDPLILKSVLAAGYENATPVQQQAIPA-ALSGGDLLVSSHTGSGKTAAFLLPSI 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRLL E A K + P R L++ PTRELALQV
Sbjct: 61 QRLLA--EPAVKSI----------GP----RVLVLTPTRELALQV 89
>gi|357128412|ref|XP_003565867.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
21-like [Brachypodium distachyon]
Length = 675
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L L++++ G+ T I A +P L +R+D+IG A+T SGKT AF LP L
Sbjct: 225 WAESALGEPLLRAVAMAGYATPTPIQMAAVP-LGLRRRDLIGVAQTGSGKTAAFVLPMLA 283
Query: 96 RLLEEREKAAKMLEEKGE-EAEKYAPKGHLRALIINPTRELALQV----LMVASPSLKSN 150
++ M+ +GE + + + P+G A+++ PTRELA Q+ +A+ + +
Sbjct: 284 YIMNLMTSPPPMIMSRGEADDDVHDPQGPY-AVVMAPTRELAQQIERETTKLAAAACHGS 342
Query: 151 SLTLAMAAGSPL 162
+++ G P+
Sbjct: 343 IKVVSVVGGQPI 354
>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
equinum CBS 127.97]
Length = 1182
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V ++ T W++ L + I KLG++ TSI +PA+ R DVIG A+T S
Sbjct: 538 VRGVDVPTPVQKWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGR-DVIGVAKTGS 596
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP + + ++R LE +G + +LI+ PTRELA Q+
Sbjct: 597 GKTIAFLLPMFRHIRDQRP-----LENM---------EGPI-SLIMTPTRELATQIHREC 641
Query: 144 SPSLKSNSLTLAMA-AGSPL 162
P LK+ +L A G+P+
Sbjct: 642 RPFLKALNLRAVCAYGGAPI 661
>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
tonsurans CBS 112818]
Length = 1182
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V ++ T W++ L + I KLG++ TSI +PA+ R DVIG A+T S
Sbjct: 538 VRGVDVPTPVQKWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGR-DVIGVAKTGS 596
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP + + ++R LE +G + +LI+ PTRELA Q+
Sbjct: 597 GKTIAFLLPMFRHIRDQRP-----LENM---------EGPI-SLIMTPTRELATQIHREC 641
Query: 144 SPSLKSNSLTLAMA-AGSPL 162
P LK+ +L A G+P+
Sbjct: 642 RPFLKALNLRAVCAYGGAPI 661
>gi|195429401|ref|XP_002062751.1| GK19535 [Drosophila willistoni]
gi|194158836|gb|EDW73737.1| GK19535 [Drosophila willistoni]
Length = 823
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 43/157 (27%)
Query: 26 EAEISTE-FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
E STE +W+ L + +++++ + GF+E T I +PA H +KD++GAAET SG
Sbjct: 209 EGFTSTEDLSSWHGLGVPQPILRALAEKGFREPTQIQAMTLPAAIHGKKDILGAAETGSG 268
Query: 85 KTRAFGLPALQRLLEEREKAA-----KMLEEKGEEAEK-----------YAP-------- 120
KT AFG+P L +++ +E+ A K + KGE+++K P
Sbjct: 269 KTLAFGIPMLAGIMDLKERNAKHGIRKAPKVKGEDSQKSEEPPRDDEHELTPPPEELDHV 328
Query: 121 -----------KGH-------LRALIINPTRELALQV 139
+ H L AL++ PTRELA+QV
Sbjct: 329 SGASDEDDSDLENHSASRERPLYALVLTPTRELAVQV 365
>gi|359299191|ref|ZP_09185030.1| ATP-dependent RNA helicase SrmB [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306790|ref|ZP_10825827.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
gi|400374139|gb|EJP27062.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
Length = 445
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L P L+K++ + G+K TS+ + IP A +D++G+A T +GKT AF LPA+Q
Sbjct: 10 FEELDLSPQLLKALAQKGYKRPTSVQEQTIP-YALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL+ + G R LI+ PTRELA+QV A + L++A
Sbjct: 69 HLLDYPRRKP----------------GAPRILILTPTRELAMQVAEEAQSFAQFTKLSIA 112
Query: 156 MAAG 159
G
Sbjct: 113 TITG 116
>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase [Desulfarculus baarsii DSM 2075]
gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
2075]
Length = 573
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 25/116 (21%)
Query: 27 AEISTEFDA--WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESG 84
A++ + DA +++L L PLL ++ + GF T I A IP + R DVIG A+T +G
Sbjct: 7 AQVRSTMDAPGFDQLGLSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGR-DVIGQAQTGTG 65
Query: 85 KTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP-KGHLRALIINPTRELALQV 139
KT AFGLP L + +P G +AL++ PTRELA+QV
Sbjct: 66 KTAAFGLPLLHNI---------------------SPGVGQAQALVLAPTRELAIQV 100
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + +L ++ +LG+K+ T I IP +A Q +D+IG AET SGKT AF LP LQ
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIP-VALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE ++ L AL++ PTRELA Q+
Sbjct: 80 TLLESPQR--------------------LYALVLTPTRELAFQI 103
>gi|224054552|ref|XP_002298317.1| predicted protein [Populus trichocarpa]
gi|222845575|gb|EEE83122.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88
+STE +++ L L K+I ++GF+ T I IP L KDV+GAA T SGKT A
Sbjct: 85 MSTE--SFDSLGLSEATRKTIQEMGFENLTQIQARAIPPLL-VGKDVLGAARTGSGKTLA 141
Query: 89 FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148
F +PA++ L +AP+ ++I PTRELA+Q VA LK
Sbjct: 142 FLIPAVELL----------------HNVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLK 185
Query: 149 SNSLTLAMAAG 159
+S TL + G
Sbjct: 186 YHSQTLGLVIG 196
>gi|223590136|sp|A5DF03.2|PRP28_PICGU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|190345810|gb|EDK37756.2| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPA 93
+W E + L+ +I +LG+KE T I +A IP AL H +DV+G AET SGKT AF +P
Sbjct: 151 SWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGH--RDVVGIAETGSGKTLAFLIPL 208
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L L +K +E K E + + L++ PTRELALQ+
Sbjct: 209 LS-YLSAIDKDYMEVEHKQE-----SNLNKVLGLVLAPTRELALQI 248
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 145
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL + +A +P H +RALI+ PTRELA QV K SL
Sbjct: 146 RLLPQASTSA-------------SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRS 192
Query: 155 AMAAG 159
A+ G
Sbjct: 193 AVVFG 197
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LH ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGR-DVMGAAQTGTGKTASFSLPIIQ 71
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K +L
Sbjct: 72 RLLPLANTSA-------------SPARHPVRALILTPTRELADQVAANVQSYAKHTALRS 118
Query: 155 AMAAG 159
A+ G
Sbjct: 119 AVVFG 123
>gi|38566158|gb|AAH62498.1| ddx47-prov protein, partial [Xenopus (Silurana) tropicalis]
Length = 401
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + +L ++ +LG+K+ T I IP +A Q +D+IG AET SGKT AF LP LQ
Sbjct: 20 FRELGVTDVLCETCEQLGWKQPTKIQIEAIP-VALQGRDIIGLAETGSGKTGAFALPILQ 78
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE ++ L AL++ PTRELA Q+
Sbjct: 79 TLLESPQR--------------------LYALVLTPTRELAFQI 102
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ +L L +++SI +GF+E+T I + IP +A + +D+IG A+T +GKT A+G+P ++
Sbjct: 4 FTDLGLSESIIRSIINMGFEETTPIQEQTIP-IAMEGRDLIGQAQTGTGKTAAYGIPLIE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R++ + E H++ +++ PTRELA+QV
Sbjct: 63 RIVGQSE--------------------HIQGIVLAPTRELAVQV 86
>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 502
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ E L+ +++++ ++GF+E+T I A IP A + KD+IG A+T +GKT AFG+P +
Sbjct: 4 FYEFGLNSEVVRAVTQMGFEEATPIQAATIPT-ALEGKDIIGQAQTGTGKTGAFGVPLID 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
R+ E + H++ALI+ PTRELA QV
Sbjct: 63 RINIEND--------------------HVQALILAPTRELANQV 86
>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 438
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 22/161 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ L L P+L++++ +LGFK T+I IP +A + +DV+ +A T +GKT AF LP +
Sbjct: 2 SFESLELDPVLLQAVEELGFKRPTTIQSQVIP-VAMEGRDVMASAPTGTGKTAAFLLPIM 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-----MVASPSLKS 149
Q +++ + G RALI+ PTRELALQ+ + A +K
Sbjct: 61 QHMIDFPRRRP----------------GPARALILTPTRELALQITEQAEALAAYTHMKV 104
Query: 150 NSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDS 190
S+ +A L E + R + EDE+ DS
Sbjct: 105 ASIIGGVAEEKQLPALEKTVDIIIATPGRLMQYIEDERFDS 145
>gi|406695006|gb|EKC98321.1| hypothetical protein A1Q2_07335 [Trichosporon asahii var. asahii
CBS 8904]
Length = 690
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 19/106 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPAL 94
W L + P L++++ GFK T I +A IP +++ +DV+G A T SGKT A+ +P L
Sbjct: 35 WQALGVAPSLVRALQLRGFKTPTPIQRASIPLTISNPPRDVLGMARTGSGKTLAYLIPLL 94
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
RL RE A +RALI+ P+RELA+Q+L
Sbjct: 95 HRLGFRREGAG------------------IRALIMCPSRELAVQIL 122
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L P ++K++ + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 39 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 97
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL +A +P H +RALI+ PTRELA QV K +L
Sbjct: 98 RLLPHASTSA-------------SPARHPVRALILTPTRELADQVAANVQSYAKHTALRS 144
Query: 155 AMAAG 159
A+ G
Sbjct: 145 AVVFG 149
>gi|384498821|gb|EIE89312.1| hypothetical protein RO3G_14023 [Rhizopus delemar RA 99-880]
Length = 808
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+++ + S + AW + L ++ ++ F T I + +P LA Q +D++G+AET S
Sbjct: 241 IDDVDQSVDVSAWKDFELAQPIVNALKYHKFSSPTPIQEKTLP-LALQGRDIVGSAETGS 299
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL-MV 142
GKT AFG+P +Q L K L LI+ PTRELA+QV +
Sbjct: 300 GKTLAFGIPIVQYLATHE-------------------KEDLSGLILTPTRELAIQVKDHI 340
Query: 143 ASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPN 174
A+ +L ++ +A+ G E + KP+
Sbjct: 341 ANVALFTDIRCVAIVGGMSAQKQERLLKGKPD 372
>gi|301610486|ref|XP_002934777.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Xenopus (Silurana) tropicalis]
Length = 402
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + +L ++ +LG+K+ T I IP +A Q +D+IG AET SGKT AF LP LQ
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIP-VALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE ++ L AL++ PTRELA Q+
Sbjct: 80 TLLESPQR--------------------LYALVLTPTRELAFQI 103
>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
Length = 532
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 21/106 (19%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+++ +L L L+K+I +LGF E + I IP L R DVIG A+T +GKT AFGLP
Sbjct: 5 ESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGR-DVIGQAQTGTGKTAAFGLPL 63
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQR+ + A++ ++AL++ PTRELALQV
Sbjct: 64 LQRI---------------DAADR-----SVQALVLCPTRELALQV 89
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 21/112 (18%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E+ T + +L + L ++ +LG+K T I + IP LA Q +D+IG AET SGKT
Sbjct: 84 EVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIP-LALQNRDIIGIAETGSGKTA 142
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF LP LQ LL +K AP L AL++ PTRELA Q+
Sbjct: 143 AFALPILQALL-----------------DKPAP---LFALVLAPTRELAAQI 174
>gi|356522085|ref|XP_003529680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Glycine
max]
Length = 701
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+WNE +L L+K++ K G+K + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 282 SWNESKLTSELLKAVEKAGYKTPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPML 340
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L E+ E P A+++ PTRELA Q+
Sbjct: 341 SYITR--------LPPISEDNEAEGPY----AVVMAPTRELAQQI 373
>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
Length = 495
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 22/128 (17%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+NEL + +MK++ K+GF+E+T I IP A + DVIG A+T +GKT AFG+P +
Sbjct: 4 FNELGVSAPIMKALEKMGFEEATPIQAETIPH-ALEGHDVIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL-TL 154
++ AK+ + +G LI+ PTRELA+QV + K S+ L
Sbjct: 63 KI------NAKLRKVQG--------------LIVAPTRELAIQVAEEINRLAKFKSVRAL 102
Query: 155 AMAAGSPL 162
A+ G P+
Sbjct: 103 AIYGGQPM 110
>gi|409051397|gb|EKM60873.1| hypothetical protein PHACADRAFT_110678 [Phanerochaete carnosa
HHB-10118-sp]
Length = 542
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L +K++ +GF T+I + IP L KDV+GAA T SGKT AF +PA++
Sbjct: 24 FSELELSEPTIKALSGMGFTHMTAIQEKSIPPLL-AGKDVLGAARTGSGKTLAFLIPAVE 82
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
L K+ P+ +I++PTRELALQ+ VA + +S T
Sbjct: 83 LL----------------HRMKFKPRNGTGIVIVSPTRELALQIFGVAKELMAHHSQTFG 126
Query: 156 MAAG 159
+ G
Sbjct: 127 IVMG 130
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ ++AL++ PTRELA+QV
Sbjct: 63 KV--------------------NVKNSAVQALVVAPTRELAIQV 86
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104
+MKS+ L F T I A IP +A KD++G A T SGKT AF +P L+RLL
Sbjct: 187 IMKSLTSLSFHTPTPIQAATIP-VALLGKDIVGNAVTGSGKTAAFMIPILERLL------ 239
Query: 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLT 164
+KG+ A R L++ PTRELA+Q V + + +++ G L
Sbjct: 240 ---YRQKGKNA------AATRCLVLVPTRELAVQCFEVGTKLAAHTDIQMSLVVGGLSLK 290
Query: 165 SEHSN-RRKPN 174
++ + R KP+
Sbjct: 291 AQEATLRSKPD 301
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 21/112 (18%)
Query: 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87
E+ T + +L + L ++ +LG+K T I + IP LA Q +D+IG AET SGKT
Sbjct: 84 EVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIP-LALQNRDIIGIAETGSGKTA 142
Query: 88 AFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
AF LP LQ LL +K AP L AL++ PTRELA Q+
Sbjct: 143 AFALPILQALL-----------------DKPAP---LFALVLAPTRELAAQI 174
>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+W E +L P L+K++ + G+K + I A IP L Q++DVIG AET SGKT AF LP L
Sbjct: 211 SWVESKLSPELLKAVERAGYKTPSPIQMAAIP-LGLQQRDVIGIAETGSGKTAAFVLPML 269
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+ L EE E P A+++ PTRELA Q+
Sbjct: 270 TYI--------SRLPPISEENEAEGPY----AVVMAPTRELAQQI 302
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L +MK+I ++GF+E+T I IP L+ Q KDVIG A+T +GKT AFG+P ++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIP-LSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ ++AL++ PTRELA+QV
Sbjct: 63 KV--------------------NVKNSAVQALVVAPTRELAIQV 86
>gi|320039765|gb|EFW21699.1| ATP-dependent RNA helicase MAK5 [Coccidioides posadasii str.
Silveira]
Length = 783
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L +E E + AW+ L L L S+ +L F T I A IPA+ Q DVIG A T
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTRAFGLPALQRLL-EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFG+P ++ L + R A E+ E ++ P ALI++PTRELA Q+
Sbjct: 238 SGKTLAFGIPIVEYFLGKYRGGRAPTASEESESTKE--PM----ALILSPTRELAHQL 289
>gi|301610484|ref|XP_002934776.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Xenopus (Silurana) tropicalis]
Length = 399
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL + +L ++ +LG+K+ T I IP +A Q +D+IG AET SGKT AF LP LQ
Sbjct: 21 FRELGVTDVLCETCEQLGWKQPTKIQIEAIP-VALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE ++ L AL++ PTRELA Q+
Sbjct: 80 TLLESPQR--------------------LYALVLTPTRELAFQI 103
>gi|46581710|ref|YP_012518.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|387154902|ref|YP_005703838.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 532
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 21/106 (19%)
Query: 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93
+++ +L L L+K+I +LGF E + I IP L R DVIG A+T +GKT AFGLP
Sbjct: 5 ESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGR-DVIGQAQTGTGKTAAFGLPL 63
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LQR+ + A++ ++AL++ PTRELALQV
Sbjct: 64 LQRI---------------DAADR-----SVQALVLCPTRELALQV 89
>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
reinhardtii]
gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
reinhardtii]
Length = 571
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W E L LL+K+I K+G+K+ + I A IP L +++DVIG AET SGKT AF LP L
Sbjct: 154 WEESGLPSLLLKAIEKVGYKKPSPIQMAAIP-LGLKQRDVIGIAETGSGKTAAFVLPMLA 212
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + EE E P A+++ PTRELA Q+
Sbjct: 213 YIMRQ--------PPMNEENEADGPY----AVVLAPTRELAQQI 244
>gi|146415030|ref|XP_001483485.1| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 19/100 (19%)
Query: 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100
L L+K+I K GFK+ T I + IP L + +DV+G A T SGKT AF LP +++L
Sbjct: 106 LSKFLLKNIAKKGFKQPTPIQRKTIP-LVMESRDVVGMARTGSGKTAAFVLPVVEKL--- 161
Query: 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
+ ++PK +RA+I++P RELALQ
Sbjct: 162 ---------------KSHSPKVGVRAVILSPLRELALQTF 186
>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
Length = 433
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 17/106 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+++EL L P + ++I +LGFKE T I IP L +D++ +A T +GKT +F PA+
Sbjct: 2 SFSELELDPTIEQAIIQLGFKEPTEIQTQGIPVLM-DGEDLLASAPTGTGKTLSFCAPAV 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
Q +L+ +EA APK ALI+ PTRELA Q+
Sbjct: 61 QHILDR------------DEASTNAPK----ALILAPTRELARQIF 90
>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
Length = 428
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ LHPL+++++ K GF T I +P L +DV G A+T +GKT AF
Sbjct: 11 FSDFALHPLVLEALEKKGFHHCTPIQALALP-LTLSGRDVAGQAQTGTGKTLAFLASTFH 69
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155
LL + K + + RALI+ PTRELA+Q+ A P +S L L
Sbjct: 70 YLLTHQAKQDRQTNQP-------------RALIMAPTRELAVQIHSDAEPLTQSTGLKLG 116
Query: 156 MAAG 159
+A G
Sbjct: 117 LAYG 120
>gi|303311697|ref|XP_003065860.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240105522|gb|EER23715.1| ATP-dependent RNA helicase MAK5, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 783
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETE 82
L +E E + AW+ L L L S+ +L F T I A IPA+ Q DVIG A T
Sbjct: 179 LQDEVEEDVDVSAWDSLDLSAELQTSLGRLKFSFPTPIQSACIPAVL-QGHDVIGKASTG 237
Query: 83 SGKTRAFGLPALQRLL-EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
SGKT AFG+P ++ L + R A E+ E ++ P ALI++PTRELA Q+
Sbjct: 238 SGKTLAFGIPIVEYFLGKYRGGRAPTASEESESTKE--PM----ALILSPTRELAHQL 289
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
W +L L+ L ++ +L +K + I K IP +A Q KDVIG AET SGKT AF LP LQ
Sbjct: 57 WKDLGLNETLCQACEELKWKAPSKIQKEAIP-VALQGKDVIGLAETGSGKTGAFALPILQ 115
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE P+ + AL++ PTRELA Q+
Sbjct: 116 ALLEN-------------------PQRYF-ALVLTPTRELAFQI 139
>gi|407701321|ref|YP_006826108.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250468|gb|AFT79653.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 483
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++ +L L L+K+I K GF + I + IP + Q KDV+ AA+T +GKT FGLP L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVL-QGKDVLAAAQTGTGKTAGFGLPIL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
QRL+ + + ++RALI+ PTRELA QV
Sbjct: 61 QRLMSGQPVSGN----------------NVRALILTPTRELAAQV 89
>gi|387128737|ref|YP_006297342.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM1]
gi|386275799|gb|AFI85697.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM1]
Length = 438
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A++ L LHPLL K + + GF+ T I +P L DV G A+T +GKT AF L
Sbjct: 9 AFSSLPLHPLLQKGLQQAGFEFCTPIQAQSLPLLL-ANHDVAGQAQTGTGKTIAFLLATF 67
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVL 140
QRLL ++A+K K RALI+ PTRELA+Q++
Sbjct: 68 QRLL------------ANQDAQKSTSK-QPRALILAPTRELAIQIV 100
>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
Length = 448
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 16/107 (14%)
Query: 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLP 92
+ + L L P+L+K++ LG + T I IP + R D++G A+T +GKT AFGLP
Sbjct: 1 METFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGR-DILGLAQTGTGKTAAFGLP 59
Query: 93 ALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L R+L ++ APK +RAL++ PTRELA Q+
Sbjct: 60 MLTRIL--------------AYGKRPAPK-TVRALVLAPTRELATQI 91
>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 605
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L P ++K++++ G++ T I IPA+ D++ A+T +GKT AF LP L
Sbjct: 3 FDELNLAPAILKAVHEQGYETPTPIQAQAIPAVL-AGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
RL +G A P G +RAL++ PTRELA QV
Sbjct: 62 RL------------TQGGTAR---PAGGIRALVLTPTRELAAQV 90
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
+N L L ++KS+ +GF+E+T I + IP L + KDVIG A+T +GKT AFG+P L
Sbjct: 3 TFNSLGLSNPILKSLDDMGFEETTPIQEQTIP-LGLEGKDVIGQAQTGTGKTAAFGIPML 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ +K K ++ LI+ PTRELA+QV
Sbjct: 62 EKI----DKQVK----------------SVQGLIVAPTRELAIQV 86
>gi|374290252|ref|YP_005037305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Blattabacterium
sp. (Cryptocercus punctulatus) str. Cpu]
gi|358377044|gb|AEU09232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Blattabacterium
sp. (Cryptocercus punctulatus) str. Cpu]
Length = 550
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 22/96 (22%)
Query: 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL-LEEREK 103
++K+I +GFK T I K IP L KD+I A+T +GKT AFGLP +Q++ LE R
Sbjct: 14 IIKAIENIGFKYPTPIQKKVIPFLLESEKDIIALAQTGTGKTAAFGLPIIQKINLEIR-- 71
Query: 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
YA +ALI+ PTREL LQ+
Sbjct: 72 --------------YA-----QALILCPTRELCLQI 88
>gi|346322147|gb|EGX91746.1| DEAD/DEAH box RNA helicase [Cordyceps militaris CM01]
Length = 1216
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
VN ++ W++ L ++ I +GF++ TSI IPAL R DVIG A+T S
Sbjct: 570 VNGKDVPKPVQKWSQCGLTRQMLDVIDSMGFEKPTSIQMQAIPALMSGR-DVIGVAKTGS 628
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP + + ++ + E G P G LI++PTRELA Q+
Sbjct: 629 GKTMAFLLPMFRHIKDQ----PPLKESDG-------PIG----LIMSPTRELATQIHRDC 673
Query: 144 SPSLKSNSLTLAMA-AGSPL 162
P LK + A G+P+
Sbjct: 674 KPFLKMMGIRAVCAYGGAPI 693
>gi|389744407|gb|EIM85590.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 910
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 18/110 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++S+ GF+ T I + IP L ++ +D++G A T SGK+ AF +P
Sbjct: 31 SFQSMGLHPWLLRSLTLQGFRTPTPIQRQSIPVLLSNPPRDLVGMARTGSGKSLAFLVPL 90
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
+QRL G A + RALI+ P RELALQV+ V
Sbjct: 91 IQRL-------------GGRHATSFGA----RALIMLPARELALQVMKVG 123
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 33/133 (24%)
Query: 19 AQEELVNEAEISTEFD------------AWNELRLHPLLMKSIYKLGFKESTSILKARIP 66
AQEE E ++ FD ++NEL+L P L+++I ++ F + T I IP
Sbjct: 38 AQEEPAKEENVAENFDTVVDPTAELKFKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIP 97
Query: 67 ALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126
A + KD+IG A+T SGKT AF +P LQ L E +A Y
Sbjct: 98 H-ALEGKDIIGLAQTGSGKTAAFAIPILQALWE-------------AQAAYY-------G 136
Query: 127 LIINPTRELALQV 139
L++ PTRELA Q+
Sbjct: 137 LVLAPTRELAYQI 149
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 24/159 (15%)
Query: 20 QEELVNEAEIS-TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGA 78
+E +E+E+ + ++ + L ++K + LGF + T I IP +A KD+ G
Sbjct: 201 KEYFADESEVDKQDHISFTSMNLSRPILKGVTSLGFVKPTPIQSQTIP-IALMGKDICGG 259
Query: 79 AETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG--HLRALIINPTRELA 136
A T SGKT AF +P L+RLL Y P+ R LI+ PTRELA
Sbjct: 260 AATGSGKTAAFVIPILERLL-------------------YRPRQTPSTRVLILCPTRELA 300
Query: 137 LQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPN 174
QV A +T + G L T E + KP+
Sbjct: 301 AQVHSAAVKFAAYTDITFCLCVGGLSLKTQEQELKLKPD 339
>gi|417044094|ref|ZP_11948595.1| ATP-dependent RNA helicase, partial [Lactobacillus rhamnosus MTCC
5462]
gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
Length = 313
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ EL L L+K+I + GF+E+T I IP L + KDVIG A+T +GKT AFGLP LQ
Sbjct: 3 FKELGLDHDLLKAIAQSGFEEATPIQAETIP-LVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138
+ +KA + ++ AL+I+PTRELA+Q
Sbjct: 62 HI----DKADRSIQ----------------ALVISPTRELAIQ 84
>gi|146420455|ref|XP_001486183.1| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
6260]
Length = 575
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIP-ALAHQRKDVIGAAETESGKTRAFGLPA 93
+W E + L+ +I +LG+KE T I +A IP AL H +DV+G AET SGKT AF +P
Sbjct: 151 SWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGH--RDVVGIAETGSGKTLAFLIPL 208
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
L L +K +E K E + + L++ PTRELALQ+
Sbjct: 209 LS-YLSAIDKDYMEVEHKQE-----SNLNKVLGLVLAPTRELALQI 248
>gi|407791990|ref|ZP_11139065.1| ATP-dependent RNA helicase SrmB [Gallaecimonas xiamenensis 3-C-1]
gi|407198466|gb|EKE68500.1| ATP-dependent RNA helicase SrmB [Gallaecimonas xiamenensis 3-C-1]
Length = 449
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
A+ L L P L++++ +LGFK+ T I IPA A D++ + T +GKT AF LPAL
Sbjct: 2 AFEHLELDPALLEAVAELGFKKPTVIQSQAIPA-AMDGHDLLAMSPTGTGKTAAFLLPAL 60
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
Q LL+ +K K P R LI+ PTRELALQV
Sbjct: 61 QHLLDYPKK------------RKEPP----RVLILTPTRELALQV 89
>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
otae CBS 113480]
gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
otae CBS 113480]
Length = 1183
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
V ++ T W++ L + I KLG++ TSI +PA+ R DVIG A+T S
Sbjct: 540 VRGVDVPTPVQKWSQCGLGVQTLDVIRKLGYEGPTSIQSQAVPAIMSGR-DVIGVAKTGS 598
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143
GKT AF LP + + ++R LE +G + +LI+ PTRELA Q+
Sbjct: 599 GKTIAFLLPMFRHIRDQRP-----LENM---------EGPI-SLIMTPTRELATQIHREC 643
Query: 144 SPSLKSNSLTLAMAAG 159
P LK+ +L A G
Sbjct: 644 RPFLKALNLRAVCAYG 659
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+++ L ++K+I + G+ T I IP + R DV+GAA+T +GKT +F LP +Q
Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGR-DVMGAAQTGTGKTASFSLPIIQ 93
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGH-LRALIINPTRELALQVLMVASPSLKSNSLTL 154
RLL + +A +P H +RALI+ PTRELA QV K SL
Sbjct: 94 RLLPQASTSA-------------SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRS 140
Query: 155 AMAAG 159
A+ G
Sbjct: 141 AVVFG 145
>gi|421095225|ref|ZP_15555938.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
gi|410361935|gb|EKP12975.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
Length = 513
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++EL L + +I ++GF+E++ I IP + + KD+IG A+T +GKT AF +PA++
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVIL-KGKDIIGHAQTGTGKTAAFAIPAIE 64
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
LLE LE K HL+ALI+ PTREL +QV
Sbjct: 65 -LLE--------LESK-----------HLQALILCPTRELVIQV 88
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 27/116 (23%)
Query: 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETES 83
+NEA I +NEL++ + K+I ++GF+E + I IPA+ DVIG A+T +
Sbjct: 1 MNEAMIK-----FNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAIL-AGGDVIGQAQTGT 54
Query: 84 GKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
GKT AFG+P + EK + H++ALI+ PTRELA+QV
Sbjct: 55 GKTAAFGIPVV---------------------EKVSTGRHVQALILTPTRELAIQV 89
>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 481
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 13/104 (12%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
+ L L ++ +I + G+++ T + + IP LA + KD++ A+T +GKT AF LP L+
Sbjct: 3 FETLGLSSPILNAITECGYQQLTQVQEKVIP-LAFEGKDIMACAQTGTGKTAAFALPVLE 61
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+L AA++L G + K LRAL++ PTRELA+QV
Sbjct: 62 KL------AAEILVSDGND------KPILRALVMTPTRELAIQV 93
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 21/104 (20%)
Query: 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95
++E L P ++++I ++GF+EST I + IP +A + +D+IG A+T +GKT AFG+P +
Sbjct: 4 FSEFGLEPKVLRAITEMGFEESTPIQEKAIP-IAMEGRDLIGQAQTGTGKTAAFGIPLIN 62
Query: 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
++ + E+ ALI+ PTRELA+QV
Sbjct: 63 KIDIKEERIV--------------------ALIMCPTRELAIQV 86
>gi|392956024|ref|ZP_10321554.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391878266|gb|EIT86856.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 514
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 21/105 (20%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94
++EL L P L+KSI +GF+E+T I + IP A Q D+IG A+T +GKT AFG+P +
Sbjct: 3 TFSELGLSPELLKSINNMGFEEATPIQRDTIPT-ALQGTDLIGQAQTGTGKTAAFGIPLI 61
Query: 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139
+++ + K ++ +++ PTRELA+QV
Sbjct: 62 EKIDVKSRK--------------------IQGIVLAPTRELAVQV 86
>gi|164656665|ref|XP_001729460.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
gi|159103351|gb|EDP42246.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
Length = 801
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112
GF + T I KA +PA R DV+G+A T SGKT AF +P L+RL +R
Sbjct: 67 GFIDMTPIQKASLPASLRGR-DVLGSARTGSGKTLAFLIPVLERLYRQR----------- 114
Query: 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK 172
++ L AL+++PTRELA+Q+ V S++ + + G LT E RK
Sbjct: 115 -----WSHTDGLGALVVSPTRELAMQIFDVLRSIGGSHTFSAGLVIGGKDLTHEQDRLRK 169
Query: 173 PN 174
N
Sbjct: 170 MN 171
>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 517
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 25/162 (15%)
Query: 15 GPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD 74
G D E N+AE E ++ +L + +++SI +LG+++ T I + +P + Q++D
Sbjct: 90 GHDGEPNETGNDAE-QNEITSFEQLNICEEVLQSIKELGWEKPTLIQQKVLP-IVFQKRD 147
Query: 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134
+IG +ET SGKT F +P LQ L K ALII+PTRE
Sbjct: 148 IIGLSETGSGKTACFIIPILQEL--------------------KIKKQSFFALIISPTRE 187
Query: 135 LALQVLMVASPSLKSNSL--TLAMAAGSPLLTSEHSNRRKPN 174
L +Q+ A +L SN L + G ++T + +KPN
Sbjct: 188 LCIQIAQNAQ-ALGSNLLINICTIFGGVDIVTQSLNLAKKPN 228
>gi|393245270|gb|EJD52781.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 927
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 18/109 (16%)
Query: 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAFGLPA 93
++ + LHP L++++ G++ T I + IPAL A +D++G A T SGKT A+ +P
Sbjct: 97 SFQSMGLHPSLLRALTLRGYRTPTPIQRLTIPALLATPPRDLVGMARTGSGKTLAYMIPL 156
Query: 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMV 142
+QRL G + + RALI+ PTRELALQVL V
Sbjct: 157 VQRL-------------GGLHSTTFGA----RALILIPTRELALQVLKV 188
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,395,130,093
Number of Sequences: 23463169
Number of extensions: 188967516
Number of successful extensions: 1581850
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4576
Number of HSP's successfully gapped in prelim test: 22920
Number of HSP's that attempted gapping in prelim test: 1436635
Number of HSP's gapped (non-prelim): 98259
length of query: 284
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 143
effective length of database: 9,050,888,538
effective search space: 1294277060934
effective search space used: 1294277060934
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 76 (33.9 bits)