Query 042526
Match_columns 284
No_of_seqs 242 out of 1755
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 2.4E-37 5.3E-42 297.5 12.9 171 35-220 92-272 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 1.1E-36 2.5E-41 279.6 9.9 173 30-223 57-240 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 1.3E-36 2.8E-41 286.8 7.4 173 33-223 180-363 (691)
4 COG0513 SrmB Superfamily II DN 100.0 1.1E-34 2.3E-39 284.9 13.0 171 34-223 29-210 (513)
5 KOG0334 RNA helicase [RNA proc 100.0 4.3E-35 9.4E-40 295.2 10.1 187 22-224 353-552 (997)
6 PTZ00110 helicase; Provisional 100.0 3.4E-33 7.3E-38 276.2 14.0 183 24-222 120-312 (545)
7 KOG0339 ATP-dependent RNA heli 100.0 8.8E-34 1.9E-38 267.5 9.0 185 23-223 212-406 (731)
8 KOG0343 RNA Helicase [RNA proc 100.0 9.8E-34 2.1E-38 269.3 7.8 177 31-224 66-252 (758)
9 KOG0335 ATP-dependent RNA heli 100.0 2E-33 4.3E-38 266.9 9.2 187 20-217 60-257 (482)
10 KOG0348 ATP-dependent RNA heli 100.0 1.8E-32 3.9E-37 260.0 10.9 165 34-213 136-313 (708)
11 KOG0333 U5 snRNP-like RNA heli 100.0 1.6E-32 3.5E-37 259.8 9.5 190 21-222 232-431 (673)
12 PLN00206 DEAD-box ATP-dependen 100.0 8.7E-32 1.9E-36 264.8 14.7 180 23-216 110-299 (518)
13 KOG0345 ATP-dependent RNA heli 100.0 9.9E-32 2.2E-36 251.8 12.4 174 34-223 4-193 (567)
14 KOG0340 ATP-dependent RNA heli 100.0 4.6E-32 1E-36 246.9 9.8 171 32-223 5-189 (442)
15 KOG0342 ATP-dependent RNA heli 100.0 6E-32 1.3E-36 254.5 10.6 175 31-223 79-266 (543)
16 KOG0336 ATP-dependent RNA heli 100.0 2.8E-32 6E-37 252.1 6.2 179 28-221 213-401 (629)
17 PRK04837 ATP-dependent RNA hel 100.0 4.8E-31 1E-35 253.4 13.7 170 34-217 8-187 (423)
18 KOG0346 RNA helicase [RNA proc 100.0 9.5E-32 2.1E-36 250.3 8.3 175 34-223 19-206 (569)
19 KOG0341 DEAD-box protein abstr 100.0 3.1E-32 6.8E-37 250.4 2.9 188 23-223 159-362 (610)
20 KOG0347 RNA helicase [RNA proc 100.0 1.4E-31 3E-36 254.7 6.5 180 27-214 174-367 (731)
21 PRK10590 ATP-dependent RNA hel 100.0 5.7E-30 1.2E-34 248.3 13.6 174 35-223 2-185 (456)
22 PRK11776 ATP-dependent RNA hel 100.0 5.2E-30 1.1E-34 248.6 12.6 170 33-223 3-183 (460)
23 PRK04537 ATP-dependent RNA hel 100.0 9.7E-30 2.1E-34 252.8 14.0 171 33-217 8-189 (572)
24 PRK11634 ATP-dependent RNA hel 100.0 1.1E-29 2.4E-34 254.4 13.4 170 33-223 5-185 (629)
25 PRK11192 ATP-dependent RNA hel 100.0 3.4E-29 7.3E-34 241.1 13.3 170 35-221 2-181 (434)
26 KOG0328 Predicted ATP-dependen 100.0 1.1E-29 2.4E-34 225.6 5.2 173 27-220 20-202 (400)
27 KOG0337 ATP-dependent RNA heli 100.0 5.3E-29 1.1E-33 231.0 6.4 171 33-223 20-200 (529)
28 KOG0326 ATP-dependent RNA heli 100.0 1.4E-29 3E-34 228.2 1.7 171 32-223 83-263 (459)
29 PRK01297 ATP-dependent RNA hel 99.9 1.5E-27 3.2E-32 232.5 13.9 174 31-218 84-268 (475)
30 TIGR03817 DECH_helic helicase/ 99.9 6.2E-26 1.3E-30 231.3 11.7 159 26-208 4-177 (742)
31 KOG0327 Translation initiation 99.9 1.4E-26 3E-31 213.0 5.2 189 14-223 6-205 (397)
32 PTZ00424 helicase 45; Provisio 99.9 2.5E-25 5.4E-30 211.5 11.8 168 32-220 26-203 (401)
33 KOG0350 DEAD-box ATP-dependent 99.9 3.8E-24 8.3E-29 202.2 8.5 153 33-204 126-312 (620)
34 cd00268 DEADc DEAD-box helicas 99.9 4.1E-23 8.8E-28 178.5 14.1 166 36-220 1-176 (203)
35 KOG4284 DEAD box protein [Tran 99.9 1.2E-24 2.6E-29 210.5 4.3 176 25-221 16-202 (980)
36 KOG0344 ATP-dependent RNA heli 99.9 5.9E-24 1.3E-28 204.3 8.2 180 20-215 118-317 (593)
37 KOG0329 ATP-dependent RNA heli 99.9 6.1E-24 1.3E-28 187.0 6.4 180 23-223 31-222 (387)
38 KOG0332 ATP-dependent RNA heli 99.9 5.8E-24 1.3E-28 195.2 5.4 175 22-223 78-269 (477)
39 PRK00254 ski2-like helicase; P 99.9 4.6E-21 9.9E-26 195.6 13.7 160 35-219 2-170 (720)
40 PRK02362 ski2-like helicase; P 99.8 4.7E-21 1E-25 196.0 12.4 148 35-208 2-158 (737)
41 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.9E-20 6.4E-25 189.0 9.5 139 52-215 12-197 (844)
42 PRK13767 ATP-dependent helicas 99.8 8.1E-20 1.7E-24 189.7 10.6 147 41-203 18-188 (876)
43 PRK09401 reverse gyrase; Revie 99.8 1.2E-19 2.6E-24 192.0 9.2 139 52-215 77-241 (1176)
44 PRK12899 secA preprotein trans 99.8 4.6E-19 9.9E-24 180.3 12.0 139 37-201 65-229 (970)
45 PRK01172 ski2-like helicase; P 99.8 1.8E-18 3.9E-23 175.4 12.5 144 35-206 2-154 (674)
46 TIGR01054 rgy reverse gyrase. 99.8 1.3E-18 2.9E-23 184.2 10.9 140 45-208 67-231 (1171)
47 COG1201 Lhr Lhr-like helicases 99.8 2.3E-18 5E-23 174.5 11.2 141 41-198 8-160 (814)
48 PRK14701 reverse gyrase; Provi 99.7 6E-18 1.3E-22 183.0 12.5 142 44-210 67-234 (1638)
49 PF00270 DEAD: DEAD/DEAH box h 99.7 6.5E-18 1.4E-22 141.0 8.4 135 58-215 1-147 (169)
50 TIGR00580 mfd transcription-re 99.7 4.8E-17 1.1E-21 168.8 14.2 135 40-199 435-585 (926)
51 PRK10917 ATP-dependent DNA hel 99.7 3.6E-17 7.7E-22 166.0 12.0 131 43-198 248-394 (681)
52 TIGR00614 recQ_fam ATP-depende 99.7 3E-17 6.6E-22 160.0 10.7 127 51-208 6-150 (470)
53 TIGR00643 recG ATP-dependent D 99.7 9.8E-17 2.1E-21 161.6 11.7 131 43-198 223-368 (630)
54 COG1205 Distinct helicase fami 99.7 8.4E-17 1.8E-21 165.9 10.0 136 41-198 55-206 (851)
55 PLN03137 ATP-dependent DNA hel 99.7 2.3E-16 5.1E-21 163.6 13.0 144 35-209 436-605 (1195)
56 PRK10689 transcription-repair 99.7 5.7E-16 1.2E-20 163.9 12.4 132 43-199 588-734 (1147)
57 PRK11057 ATP-dependent DNA hel 99.6 9.4E-16 2E-20 153.9 11.0 138 40-208 8-162 (607)
58 KOG0349 Putative DEAD-box RNA 99.6 2.9E-16 6.2E-21 147.1 5.5 68 33-101 1-68 (725)
59 PRK12898 secA preprotein trans 99.6 1.8E-15 4E-20 151.0 11.3 102 52-181 100-201 (656)
60 PRK09200 preprotein translocas 99.6 2.8E-15 6.1E-20 152.5 12.4 130 52-208 75-221 (790)
61 TIGR01389 recQ ATP-dependent D 99.6 4.2E-15 9.1E-20 148.8 10.7 131 47-208 3-150 (591)
62 PHA02653 RNA helicase NPH-II; 99.6 8.6E-15 1.9E-19 147.6 10.7 128 59-204 167-308 (675)
63 TIGR00963 secA preprotein tran 99.6 1.8E-14 3.8E-19 145.1 11.3 122 52-201 53-190 (745)
64 TIGR03714 secA2 accessory Sec 99.5 3.2E-14 7E-19 143.9 10.8 131 52-209 67-218 (762)
65 COG1204 Superfamily II helicas 99.5 3.9E-14 8.4E-19 144.7 10.4 153 40-222 15-168 (766)
66 PHA02558 uvsW UvsW helicase; P 99.4 7.1E-13 1.5E-17 130.4 11.0 122 54-204 112-239 (501)
67 PRK13104 secA preprotein trans 99.4 6.9E-13 1.5E-17 135.6 9.9 130 52-209 79-225 (896)
68 COG1202 Superfamily II helicas 99.4 1.3E-12 2.9E-17 126.4 8.2 159 34-220 194-358 (830)
69 PRK05580 primosome assembly pr 99.4 6.6E-12 1.4E-16 127.6 13.2 116 56-198 144-269 (679)
70 PRK09751 putative ATP-dependen 99.3 1.2E-12 2.6E-17 140.6 7.3 116 77-202 1-139 (1490)
71 smart00487 DEXDc DEAD-like hel 99.3 4.6E-12 1E-16 106.3 9.5 143 51-215 3-157 (201)
72 PRK13766 Hef nuclease; Provisi 99.2 6.3E-11 1.4E-15 122.1 12.2 123 54-200 13-144 (773)
73 PRK12904 preprotein translocas 99.2 6.7E-11 1.4E-15 120.9 10.0 128 52-207 78-222 (830)
74 TIGR01407 dinG_rel DnaQ family 99.2 9.8E-11 2.1E-15 122.0 11.0 97 41-161 231-333 (850)
75 TIGR03158 cas3_cyano CRISPR-as 99.2 5E-11 1.1E-15 112.6 7.8 74 60-160 1-80 (357)
76 PRK11664 ATP-dependent RNA hel 99.1 8.9E-11 1.9E-15 121.2 8.7 106 70-203 18-133 (812)
77 TIGR01970 DEAH_box_HrpB ATP-de 99.1 1.4E-10 3.1E-15 119.7 9.8 114 65-207 11-134 (819)
78 PRK07246 bifunctional ATP-depe 99.1 2.9E-10 6.3E-15 117.7 10.5 88 49-161 239-330 (820)
79 KOG0952 DNA/RNA helicase MER3/ 99.1 2.2E-10 4.7E-15 117.2 9.2 104 51-167 105-208 (1230)
80 TIGR01587 cas3_core CRISPR-ass 99.1 1.3E-10 2.8E-15 109.1 6.1 53 74-147 1-53 (358)
81 PRK13107 preprotein translocas 99.1 3.2E-10 6.9E-15 116.1 9.0 121 52-200 79-215 (908)
82 TIGR03117 cas_csf4 CRISPR-asso 99.0 1.2E-09 2.6E-14 109.7 10.8 72 70-162 14-88 (636)
83 cd00046 DEXDc DEAD-like helica 98.8 1.9E-08 4.1E-13 79.4 8.5 112 73-206 1-122 (144)
84 smart00488 DEXDc2 DEAD-like he 98.8 2.3E-08 5E-13 91.9 10.1 77 53-147 6-85 (289)
85 smart00489 DEXDc3 DEAD-like he 98.8 2.3E-08 5E-13 91.9 10.1 77 53-147 6-85 (289)
86 KOG0354 DEAD-box like helicase 98.8 2.1E-08 4.7E-13 100.8 8.9 120 54-198 60-190 (746)
87 COG1111 MPH1 ERCC4-like helica 98.7 5.9E-08 1.3E-12 93.4 9.4 119 56-198 15-142 (542)
88 TIGR00595 priA primosomal prot 98.6 1.3E-07 2.7E-12 93.4 8.0 97 76-198 1-104 (505)
89 COG4581 Superfamily II RNA hel 98.6 1.7E-07 3.7E-12 97.7 8.3 89 47-160 111-199 (1041)
90 COG1200 RecG RecG-like helicas 98.5 3.7E-07 7.9E-12 91.0 9.4 145 39-208 245-414 (677)
91 PF04851 ResIII: Type III rest 98.5 2.1E-07 4.6E-12 77.9 6.5 67 56-148 3-75 (184)
92 COG0514 RecQ Superfamily II DN 98.5 1.4E-07 2.9E-12 93.7 5.9 135 46-211 6-157 (590)
93 COG1110 Reverse gyrase [DNA re 98.5 9.4E-07 2E-11 91.1 11.7 103 52-179 79-188 (1187)
94 PRK08074 bifunctional ATP-depe 98.5 6.7E-07 1.4E-11 94.3 10.4 85 53-160 255-345 (928)
95 PRK12906 secA preprotein trans 98.4 2E-06 4.3E-11 88.2 11.5 100 52-179 77-176 (796)
96 PRK12326 preprotein translocas 98.4 3.1E-06 6.7E-11 85.6 12.0 100 52-179 75-174 (764)
97 PRK11448 hsdR type I restricti 98.4 1E-06 2.3E-11 94.0 8.3 71 56-147 413-487 (1123)
98 COG1061 SSL2 DNA or RNA helica 98.3 1.4E-06 3.1E-11 84.6 8.6 78 55-160 35-116 (442)
99 KOG0352 ATP-dependent DNA heli 98.3 8.7E-07 1.9E-11 84.0 6.6 140 44-213 6-169 (641)
100 PRK09694 helicase Cas3; Provis 98.3 2.6E-06 5.7E-11 88.8 9.2 86 54-161 284-371 (878)
101 KOG0353 ATP-dependent DNA heli 98.3 3.8E-06 8.3E-11 78.7 8.6 84 37-147 74-158 (695)
102 PRK13103 secA preprotein trans 98.2 5.2E-06 1.1E-10 85.7 10.0 101 52-180 79-179 (913)
103 PRK11131 ATP-dependent RNA hel 98.2 1.4E-06 3E-11 93.3 5.7 113 64-209 81-209 (1294)
104 TIGR00603 rad25 DNA repair hel 98.2 5.7E-06 1.2E-10 84.4 9.7 79 56-160 255-335 (732)
105 PRK11747 dinG ATP-dependent DN 98.2 1.1E-05 2.3E-10 82.8 11.3 85 53-160 23-118 (697)
106 CHL00122 secA preprotein trans 98.2 1.1E-05 2.4E-10 83.0 10.8 100 52-179 73-172 (870)
107 COG1199 DinG Rad3-related DNA 98.2 5.9E-06 1.3E-10 83.9 8.9 74 51-146 10-86 (654)
108 KOG0951 RNA helicase BRR2, DEA 98.1 8.7E-06 1.9E-10 85.5 8.9 109 40-162 295-403 (1674)
109 TIGR00604 rad3 DNA repair heli 98.1 1.3E-05 2.8E-10 82.3 9.6 76 52-147 6-84 (705)
110 KOG0947 Cytoplasmic exosomal R 98.0 8.7E-06 1.9E-10 83.5 6.3 80 52-160 294-373 (1248)
111 PRK12902 secA preprotein trans 97.8 8.8E-05 1.9E-09 76.6 9.9 100 52-179 82-181 (939)
112 COG1198 PriA Primosomal protei 97.8 8.3E-05 1.8E-09 76.0 9.1 114 56-195 198-321 (730)
113 KOG0351 ATP-dependent DNA heli 97.8 5E-05 1.1E-09 79.6 7.0 89 45-164 252-341 (941)
114 PF07517 SecA_DEAD: SecA DEAD- 97.7 0.00017 3.7E-09 65.6 8.3 87 52-165 74-160 (266)
115 TIGR01967 DEAH_box_HrpA ATP-de 97.7 5.6E-05 1.2E-09 81.4 5.8 129 52-208 60-201 (1283)
116 COG1197 Mfd Transcription-repa 97.7 0.00043 9.3E-09 73.1 11.8 135 40-198 578-727 (1139)
117 TIGR00348 hsdR type I site-spe 97.6 0.00013 2.9E-09 74.5 8.0 71 57-148 239-318 (667)
118 PF13086 AAA_11: AAA domain; P 97.6 0.00018 3.9E-09 62.2 7.4 73 57-145 2-75 (236)
119 KOG0951 RNA helicase BRR2, DEA 97.6 7.1E-05 1.5E-09 78.9 4.5 99 54-178 1141-1240(1674)
120 PF13604 AAA_30: AAA domain; P 97.6 0.00046 9.9E-09 59.8 8.9 65 56-143 1-66 (196)
121 PF13245 AAA_19: Part of AAA d 97.6 0.00038 8.2E-09 51.2 7.2 53 72-143 9-62 (76)
122 KOG0948 Nuclear exosomal RNA h 97.5 0.00013 2.9E-09 73.5 5.2 71 57-151 130-200 (1041)
123 PF00580 UvrD-helicase: UvrD/R 97.3 0.00091 2E-08 60.7 7.6 70 57-148 1-70 (315)
124 TIGR00376 DNA helicase, putati 97.2 0.0019 4.1E-08 65.8 9.4 67 56-145 157-223 (637)
125 COG0556 UvrB Helicase subunit 97.0 0.002 4.4E-08 63.1 7.5 72 56-153 12-87 (663)
126 COG1203 CRISPR-associated heli 97.0 0.0021 4.5E-08 66.5 7.8 77 57-152 196-275 (733)
127 PF00176 SNF2_N: SNF2 family N 96.8 0.0042 9E-08 56.1 7.3 72 71-161 24-95 (299)
128 KOG0950 DNA polymerase theta/e 96.7 0.003 6.6E-08 65.4 6.4 108 31-161 198-307 (1008)
129 PF07652 Flavi_DEAD: Flaviviru 96.7 0.0033 7.1E-08 52.0 5.4 54 71-146 3-56 (148)
130 PRK12903 secA preprotein trans 96.6 0.0097 2.1E-07 61.8 9.1 100 52-179 75-174 (925)
131 COG4098 comFA Superfamily II D 96.6 0.0061 1.3E-07 57.0 6.9 112 56-198 97-213 (441)
132 PRK13894 conjugal transfer ATP 96.4 0.0089 1.9E-07 55.8 7.0 50 45-97 123-172 (319)
133 KOG1803 DNA helicase [Replicat 96.4 0.0071 1.5E-07 60.1 6.6 64 56-143 185-249 (649)
134 TIGR01448 recD_rel helicase, p 96.4 0.03 6.5E-07 57.9 11.4 67 52-141 320-386 (720)
135 TIGR01447 recD exodeoxyribonuc 96.4 0.02 4.3E-07 57.8 9.8 68 59-145 148-215 (586)
136 PRK15483 type III restriction- 96.2 0.02 4.2E-07 60.5 9.0 51 73-144 60-110 (986)
137 PRK13833 conjugal transfer pro 96.1 0.014 3E-07 54.6 6.7 48 47-97 121-168 (323)
138 KOG2340 Uncharacterized conser 96.1 0.03 6.6E-07 55.1 8.8 93 55-148 215-318 (698)
139 PRK11054 helD DNA helicase IV; 96.1 0.035 7.6E-07 57.1 9.8 82 55-158 195-276 (684)
140 PRK10875 recD exonuclease V su 96.0 0.041 8.9E-07 55.8 10.0 70 58-147 154-223 (615)
141 TIGR00631 uvrb excinuclease AB 96.0 0.012 2.7E-07 60.0 6.1 68 56-149 9-80 (655)
142 TIGR02782 TrbB_P P-type conjug 96.0 0.019 4.2E-07 53.1 6.6 51 44-97 106-156 (299)
143 KOG1132 Helicase of the DEAD s 95.9 0.032 6.9E-07 57.7 8.6 94 56-149 21-136 (945)
144 KOG1802 RNA helicase nonsense 95.8 0.035 7.6E-07 56.0 8.2 76 48-146 402-477 (935)
145 PRK14873 primosome assembly pr 95.8 0.021 4.6E-07 58.4 6.7 98 76-198 164-269 (665)
146 PF02562 PhoH: PhoH-like prote 95.8 0.019 4.1E-07 50.3 5.5 45 54-99 2-46 (205)
147 PLN03142 Probable chromatin-re 95.8 0.053 1.1E-06 58.0 9.7 123 56-201 169-305 (1033)
148 PRK10919 ATP-dependent DNA hel 95.7 0.019 4.2E-07 58.9 6.2 71 56-148 2-72 (672)
149 COG2805 PilT Tfp pilus assembl 95.7 0.018 3.9E-07 53.2 5.1 54 27-100 99-152 (353)
150 PRK12901 secA preprotein trans 95.6 0.039 8.5E-07 58.4 7.7 126 56-207 169-319 (1112)
151 TIGR01074 rep ATP-dependent DN 95.4 0.035 7.5E-07 56.7 6.6 70 57-148 2-71 (664)
152 PRK12900 secA preprotein trans 95.3 0.057 1.2E-06 57.0 8.0 126 56-208 138-288 (1025)
153 TIGR02768 TraA_Ti Ti-type conj 95.1 0.16 3.4E-06 52.8 10.5 77 41-141 338-414 (744)
154 PRK05298 excinuclease ABC subu 95.1 0.041 8.9E-07 56.3 6.0 68 56-149 12-83 (652)
155 TIGR02525 plasmid_TraJ plasmid 95.1 0.037 8.1E-07 52.8 5.3 27 72-99 149-175 (372)
156 PRK10536 hypothetical protein; 95.0 0.047 1E-06 49.5 5.4 45 52-97 55-99 (262)
157 KOG1133 Helicase of the DEAD s 94.9 0.063 1.4E-06 54.4 6.6 47 56-102 15-64 (821)
158 COG3973 Superfamily I DNA and 94.9 0.078 1.7E-06 53.1 7.1 92 39-149 187-286 (747)
159 TIGR01075 uvrD DNA helicase II 94.9 0.093 2E-06 54.2 8.0 72 55-148 3-74 (715)
160 COG4889 Predicted helicase [Ge 94.8 0.071 1.5E-06 55.5 6.8 94 35-157 141-239 (1518)
161 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.047 1E-06 51.9 5.3 27 70-97 132-158 (358)
162 COG4096 HsdR Type I site-speci 94.8 0.08 1.7E-06 54.6 7.1 73 56-149 165-241 (875)
163 TIGR02785 addA_Gpos recombinat 94.7 0.068 1.5E-06 58.5 6.9 66 57-145 2-67 (1232)
164 PRK11773 uvrD DNA-dependent he 94.6 0.086 1.9E-06 54.5 7.1 72 55-148 8-79 (721)
165 COG0630 VirB11 Type IV secreto 94.6 0.059 1.3E-06 50.2 5.3 44 54-98 125-168 (312)
166 PRK04914 ATP-dependent helicas 94.5 0.15 3.2E-06 54.3 8.5 68 56-145 152-220 (956)
167 KOG0953 Mitochondrial RNA heli 94.5 0.027 5.9E-07 55.6 2.8 97 72-201 191-289 (700)
168 PRK14722 flhF flagellar biosyn 94.3 0.5 1.1E-05 45.2 10.9 21 70-90 135-155 (374)
169 PF01695 IstB_IS21: IstB-like 94.2 0.086 1.9E-06 45.0 5.0 29 70-99 45-73 (178)
170 PRK13889 conjugal transfer rel 94.1 0.29 6.2E-06 52.3 9.8 64 52-140 343-407 (988)
171 PF09848 DUF2075: Uncharacteri 94.0 0.047 1E-06 51.4 3.3 53 74-147 3-55 (352)
172 PRK13764 ATPase; Provisional 93.9 0.11 2.4E-06 52.5 5.9 28 70-98 255-282 (602)
173 TIGR01073 pcrA ATP-dependent D 93.9 0.21 4.6E-06 51.7 8.1 72 55-148 3-74 (726)
174 PF02534 T4SS-DNA_transf: Type 93.7 0.048 1E-06 53.2 2.9 49 73-146 45-93 (469)
175 PRK13851 type IV secretion sys 93.7 0.057 1.2E-06 51.0 3.2 32 64-96 154-185 (344)
176 PRK05973 replicative DNA helic 93.5 0.17 3.7E-06 45.3 5.9 48 39-88 23-80 (237)
177 KOG0952 DNA/RNA helicase MER3/ 93.5 0.033 7.3E-07 58.6 1.4 89 55-164 926-1014(1230)
178 KOG1805 DNA replication helica 93.4 0.44 9.5E-06 50.2 9.3 87 31-144 648-734 (1100)
179 cd01126 TraG_VirD4 The TraG/Tr 93.3 0.035 7.5E-07 52.9 1.1 48 74-146 1-48 (384)
180 PRK06921 hypothetical protein; 93.2 0.53 1.2E-05 42.8 8.7 27 71-98 116-142 (266)
181 KOG0949 Predicted helicase, DE 93.2 0.22 4.8E-06 52.4 6.8 67 56-144 511-577 (1330)
182 TIGR01420 pilT_fam pilus retra 93.1 0.21 4.5E-06 47.1 6.1 27 70-97 120-146 (343)
183 PRK13900 type IV secretion sys 93.0 0.13 2.8E-06 48.4 4.5 33 64-97 152-184 (332)
184 COG4962 CpaF Flp pilus assembl 93.0 0.18 4E-06 47.4 5.3 36 52-87 153-188 (355)
185 PRK10436 hypothetical protein; 92.9 0.18 3.9E-06 49.5 5.4 26 71-97 217-242 (462)
186 PRK06835 DNA replication prote 92.8 0.36 7.7E-06 45.4 7.1 47 71-141 182-228 (329)
187 COG1484 DnaC DNA replication p 92.7 0.26 5.7E-06 44.5 5.9 70 52-145 79-154 (254)
188 cd01129 PulE-GspE PulE/GspE Th 92.7 0.26 5.6E-06 44.7 5.8 46 48-97 58-104 (264)
189 TIGR03819 heli_sec_ATPase heli 92.7 0.18 3.9E-06 47.6 4.9 42 44-87 152-193 (340)
190 cd01130 VirB11-like_ATPase Typ 92.6 0.16 3.4E-06 43.4 4.2 34 56-89 9-42 (186)
191 PRK13897 type IV secretion sys 92.6 0.078 1.7E-06 53.7 2.6 49 73-146 159-207 (606)
192 PRK08181 transposase; Validate 92.6 0.38 8.2E-06 43.9 6.8 18 70-87 104-121 (269)
193 PF12340 DUF3638: Protein of u 92.5 1.2 2.7E-05 39.6 9.8 96 34-154 3-101 (229)
194 TIGR02538 type_IV_pilB type IV 92.4 0.2 4.2E-06 50.5 5.1 46 48-97 294-340 (564)
195 PF00437 T2SE: Type II/IV secr 92.3 0.13 2.9E-06 46.3 3.5 27 70-97 125-151 (270)
196 PRK13826 Dtr system oriT relax 92.3 1 2.3E-05 48.7 10.5 78 40-141 366-443 (1102)
197 KOG4439 RNA polymerase II tran 92.2 0.61 1.3E-05 47.7 8.0 109 57-179 326-438 (901)
198 PRK13850 type IV secretion sys 91.9 0.11 2.4E-06 53.3 2.6 48 73-145 140-187 (670)
199 TIGR03499 FlhF flagellar biosy 91.6 1.4 3E-05 40.3 9.4 19 71-89 193-211 (282)
200 PF12846 AAA_10: AAA-like doma 91.5 0.54 1.2E-05 42.1 6.5 42 73-137 2-43 (304)
201 cd01124 KaiC KaiC is a circadi 91.5 0.37 7.9E-06 40.4 5.1 48 75-146 2-49 (187)
202 PF05970 PIF1: PIF1-like helic 91.4 0.39 8.4E-06 45.6 5.7 60 57-139 2-66 (364)
203 TIGR02533 type_II_gspE general 91.0 0.36 7.8E-06 47.8 5.1 46 48-97 220-266 (486)
204 PRK13876 conjugal transfer cou 90.6 0.18 3.8E-06 51.7 2.6 48 73-145 145-192 (663)
205 KOG0924 mRNA splicing factor A 90.5 0.29 6.2E-06 49.9 3.9 123 58-208 358-494 (1042)
206 PRK12377 putative replication 90.5 0.91 2E-05 40.9 6.9 48 72-143 101-148 (248)
207 cd01122 GP4d_helicase GP4d_hel 90.2 0.19 4E-06 45.2 2.2 49 44-94 3-51 (271)
208 COG1643 HrpA HrpA-like helicas 90.2 0.24 5.2E-06 52.0 3.3 20 70-89 63-82 (845)
209 cd00984 DnaB_C DnaB helicase C 90.2 0.73 1.6E-05 40.5 6.0 29 70-99 11-39 (242)
210 COG2804 PulE Type II secretory 89.9 0.66 1.4E-05 45.7 5.8 47 49-99 237-284 (500)
211 PF04665 Pox_A32: Poxvirus A32 89.8 0.41 8.9E-06 43.0 4.0 23 74-97 15-37 (241)
212 PF10278 Med19: Mediator of RN 89.6 0.54 1.2E-05 40.1 4.4 15 161-175 60-74 (178)
213 COG3587 Restriction endonuclea 89.6 0.57 1.2E-05 48.8 5.2 48 73-141 75-122 (985)
214 PRK13880 conjugal transfer cou 89.3 0.2 4.4E-06 51.1 1.9 46 73-143 176-221 (636)
215 PRK07952 DNA replication prote 89.3 1.4 2.9E-05 39.7 7.0 25 73-98 100-124 (244)
216 PRK06526 transposase; Provisio 89.2 0.5 1.1E-05 42.7 4.2 20 70-89 96-115 (254)
217 smart00382 AAA ATPases associa 89.2 0.26 5.5E-06 37.9 2.1 18 72-89 2-19 (148)
218 PRK13822 conjugal transfer cou 89.2 0.26 5.6E-06 50.4 2.5 49 72-145 224-272 (641)
219 PRK08939 primosomal protein Dn 89.2 1.5 3.3E-05 40.7 7.5 17 71-87 155-171 (306)
220 TIGR02767 TraG-Ti Ti-type conj 89.2 0.25 5.5E-06 50.2 2.5 49 73-146 212-260 (623)
221 cd01131 PilT Pilus retraction 89.2 0.45 9.8E-06 41.1 3.7 22 75-97 4-25 (198)
222 PRK08116 hypothetical protein; 89.1 1.6 3.6E-05 39.6 7.5 48 72-143 114-161 (268)
223 cd00009 AAA The AAA+ (ATPases 88.7 0.9 1.9E-05 35.3 4.9 16 72-87 19-34 (151)
224 COG1219 ClpX ATP-dependent pro 88.5 0.25 5.4E-06 46.2 1.7 18 70-87 95-112 (408)
225 KOG0744 AAA+-type ATPase [Post 88.4 1.3 2.7E-05 41.7 6.2 29 70-99 175-203 (423)
226 PF10412 TrwB_AAD_bind: Type I 88.4 0.65 1.4E-05 44.5 4.6 49 70-141 13-61 (386)
227 COG0610 Type I site-specific r 88.3 2.3 5E-05 45.6 9.0 91 39-150 220-330 (962)
228 cd01127 TrwB Bacterial conjuga 88.2 0.52 1.1E-05 45.5 3.8 51 65-139 36-86 (410)
229 TIGR03877 thermo_KaiC_1 KaiC d 88.1 1 2.2E-05 40.0 5.3 54 70-147 19-72 (237)
230 PF02399 Herpes_ori_bp: Origin 87.8 0.78 1.7E-05 47.7 4.9 51 74-146 51-101 (824)
231 PF12775 AAA_7: P-loop contain 87.6 0.55 1.2E-05 42.9 3.4 25 64-88 25-49 (272)
232 PRK09183 transposase/IS protei 87.6 1.3 2.8E-05 40.1 5.7 19 70-88 100-118 (259)
233 PF06745 KaiC: KaiC; InterPro 87.5 1.3 2.7E-05 38.7 5.6 55 70-147 17-71 (226)
234 KOG0733 Nuclear AAA ATPase (VC 87.4 0.4 8.8E-06 48.3 2.5 69 15-87 168-238 (802)
235 TIGR02788 VirB11 P-type DNA tr 87.3 0.61 1.3E-05 43.2 3.5 20 69-88 141-160 (308)
236 TIGR02640 gas_vesic_GvpN gas v 87.1 0.75 1.6E-05 41.5 3.9 20 70-89 19-38 (262)
237 PRK14712 conjugal transfer nic 86.7 2.7 5.7E-05 47.3 8.5 63 56-140 835-901 (1623)
238 KOG1533 Predicted GTPase [Gene 86.5 0.74 1.6E-05 41.3 3.4 25 75-100 5-29 (290)
239 PRK08533 flagellar accessory p 86.3 1.5 3.3E-05 38.8 5.4 19 70-88 22-40 (230)
240 KOG4150 Predicted ATP-dependen 86.0 0.57 1.2E-05 46.9 2.7 72 48-141 278-349 (1034)
241 TIGR02562 cas3_yersinia CRISPR 85.8 2.6 5.6E-05 45.3 7.5 89 58-167 410-505 (1110)
242 PRK08084 DNA replication initi 85.8 3.3 7.2E-05 36.7 7.3 17 71-87 44-60 (235)
243 TIGR02760 TraI_TIGR conjugativ 85.8 2.8 6E-05 48.3 8.3 66 55-140 1018-1085(1960)
244 PRK08727 hypothetical protein; 85.6 2 4.4E-05 38.0 5.8 15 73-87 42-56 (233)
245 KOG0389 SNF2 family DNA-depend 85.5 1.3 2.7E-05 46.0 4.9 108 70-202 416-539 (941)
246 PRK04328 hypothetical protein; 85.5 1.8 3.8E-05 38.8 5.5 18 70-87 21-38 (249)
247 COG1224 TIP49 DNA helicase TIP 85.1 0.83 1.8E-05 43.4 3.2 27 70-97 63-89 (450)
248 PRK12723 flagellar biosynthesi 85.1 4.1 8.9E-05 39.2 8.0 19 72-90 174-192 (388)
249 COG1419 FlhF Flagellar GTP-bin 84.9 2.9 6.2E-05 40.3 6.8 20 71-90 202-221 (407)
250 PTZ00454 26S protease regulato 84.6 0.54 1.2E-05 45.3 1.8 55 31-89 139-196 (398)
251 COG1074 RecB ATP-dependent exo 84.5 2 4.3E-05 47.0 6.2 54 70-141 14-67 (1139)
252 PRK12727 flagellar biosynthesi 84.4 8.1 0.00018 38.8 9.9 20 70-89 348-367 (559)
253 TIGR01547 phage_term_2 phage t 84.4 2.5 5.4E-05 40.3 6.3 59 74-152 3-62 (396)
254 TIGR03878 thermo_KaiC_2 KaiC d 84.3 1.8 3.9E-05 39.0 5.0 18 70-87 34-51 (259)
255 PF13191 AAA_16: AAA ATPase do 84.2 1.1 2.4E-05 37.1 3.4 27 70-97 22-48 (185)
256 TIGR03743 SXT_TraD conjugative 84.2 2.4 5.2E-05 43.4 6.3 55 72-149 176-232 (634)
257 TIGR03881 KaiC_arch_4 KaiC dom 84.2 1.6 3.4E-05 38.1 4.5 19 70-88 18-36 (229)
258 COG0467 RAD55 RecA-superfamily 83.9 1.4 3E-05 39.5 4.1 55 70-148 21-75 (260)
259 KOG0387 Transcription-coupled 83.8 2.1 4.5E-05 44.4 5.5 84 56-162 205-291 (923)
260 PF06068 TIP49: TIP49 C-termin 83.6 0.78 1.7E-05 43.8 2.4 26 70-96 48-73 (398)
261 PF13401 AAA_22: AAA domain; P 83.5 0.67 1.5E-05 36.3 1.7 18 71-88 3-20 (131)
262 PRK05703 flhF flagellar biosyn 83.3 7.1 0.00015 37.9 8.9 20 71-90 220-239 (424)
263 PTZ00361 26 proteosome regulat 83.1 0.74 1.6E-05 44.9 2.1 54 32-89 178-234 (438)
264 PRK13709 conjugal transfer nic 83.1 5.8 0.00013 45.1 9.2 65 56-140 967-1033(1747)
265 PF05729 NACHT: NACHT domain 83.0 2.8 6.1E-05 33.8 5.3 25 74-99 2-26 (166)
266 PF03796 DnaB_C: DnaB-like hel 82.7 4.2 9.2E-05 36.3 6.7 29 70-99 17-45 (259)
267 PRK05595 replicative DNA helic 82.6 4.1 8.9E-05 39.7 7.1 27 70-97 199-225 (444)
268 PHA02533 17 large terminase pr 82.6 6.6 0.00014 39.4 8.6 72 56-149 59-130 (534)
269 COG0210 UvrD Superfamily I DNA 82.5 4.1 9E-05 41.5 7.3 72 56-149 2-73 (655)
270 TIGR03600 phage_DnaB phage rep 82.5 4.2 9E-05 39.2 7.0 43 53-97 176-218 (421)
271 PF01078 Mg_chelatase: Magnesi 82.2 1.4 3.1E-05 38.6 3.3 20 69-88 19-38 (206)
272 KOG0390 DNA repair protein, SN 82.1 7.2 0.00016 40.7 8.8 90 56-162 238-336 (776)
273 PF13481 AAA_25: AAA domain; P 82.0 4.8 0.0001 33.8 6.5 27 71-98 31-57 (193)
274 TIGR00665 DnaB replicative DNA 82.0 4.4 9.5E-05 39.2 7.0 28 70-98 193-220 (434)
275 PF00004 AAA: ATPase family as 81.9 0.93 2E-05 35.2 1.9 14 75-88 1-14 (132)
276 PRK05748 replicative DNA helic 81.9 4.7 0.0001 39.3 7.2 27 70-97 201-227 (448)
277 KOG0745 Putative ATP-dependent 81.7 1.5 3.3E-05 42.7 3.6 55 71-150 225-283 (564)
278 TIGR03754 conj_TOL_TraD conjug 81.7 4 8.7E-05 41.8 6.7 55 72-149 180-236 (643)
279 PRK04296 thymidine kinase; Pro 81.1 2.3 5.1E-05 36.3 4.3 25 72-97 2-26 (190)
280 KOG1942 DNA helicase, TBP-inte 81.1 1.5 3.2E-05 40.8 3.1 27 70-97 62-88 (456)
281 cd01394 radB RadB. The archaea 81.1 7.2 0.00015 33.7 7.4 19 70-88 17-35 (218)
282 TIGR03420 DnaA_homol_Hda DnaA 81.0 1.9 4.1E-05 37.3 3.7 19 70-88 36-54 (226)
283 TIGR02760 TraI_TIGR conjugativ 80.8 6 0.00013 45.7 8.4 64 56-142 429-493 (1960)
284 KOG1002 Nucleotide excision re 80.8 2.6 5.6E-05 41.8 4.8 88 56-169 184-275 (791)
285 COG5008 PilU Tfp pilus assembl 80.6 1.8 3.8E-05 39.8 3.4 47 29-95 103-149 (375)
286 TIGR02237 recomb_radB DNA repa 80.6 3.9 8.5E-05 35.0 5.5 21 70-90 10-30 (209)
287 PRK03992 proteasome-activating 80.5 0.89 1.9E-05 43.6 1.6 53 32-88 126-181 (389)
288 COG0606 Predicted ATPase with 80.5 1.6 3.4E-05 42.9 3.2 20 69-88 195-214 (490)
289 PHA02244 ATPase-like protein 80.3 1.8 3.9E-05 41.4 3.5 20 68-87 115-134 (383)
290 PLN03025 replication factor C 80.3 2.4 5.2E-05 39.3 4.3 40 35-88 11-50 (319)
291 COG1222 RPT1 ATP-dependent 26S 80.2 2.3 5E-05 40.4 4.2 54 32-89 146-202 (406)
292 cd01120 RecA-like_NTPases RecA 80.2 4.5 9.7E-05 32.2 5.5 14 75-88 2-15 (165)
293 PF13555 AAA_29: P-loop contai 80.0 1.5 3.1E-05 31.0 2.1 17 72-88 23-39 (62)
294 TIGR03689 pup_AAA proteasome A 80.0 1.1 2.3E-05 44.7 2.0 53 32-88 177-232 (512)
295 TIGR02784 addA_alphas double-s 79.9 2.9 6.2E-05 45.7 5.4 55 71-145 9-63 (1141)
296 PLN03187 meiotic recombination 79.9 8.7 0.00019 36.3 8.0 32 26-57 24-55 (344)
297 TIGR02688 conserved hypothetic 79.8 1.7 3.7E-05 42.3 3.3 47 43-90 174-227 (449)
298 PTZ00301 uridine kinase; Provi 79.7 3.1 6.8E-05 36.4 4.7 23 75-98 6-28 (210)
299 KOG0926 DEAH-box RNA helicase 79.5 1.8 3.9E-05 45.1 3.4 34 54-87 242-286 (1172)
300 COG1875 NYN ribonuclease and A 79.4 4.7 0.0001 38.6 5.9 49 52-101 224-274 (436)
301 TIGR01242 26Sp45 26S proteasom 79.2 1.3 2.9E-05 41.8 2.3 54 31-88 116-172 (364)
302 PRK05707 DNA polymerase III su 79.0 16 0.00035 34.2 9.5 100 57-160 4-115 (328)
303 KOG1123 RNA polymerase II tran 78.9 1.7 3.8E-05 43.0 3.0 67 56-148 302-370 (776)
304 KOG0385 Chromatin remodeling c 78.8 9.9 0.00022 39.6 8.3 129 56-209 167-312 (971)
305 PF01935 DUF87: Domain of unkn 78.4 3.2 6.8E-05 36.2 4.3 26 72-98 23-48 (229)
306 KOG0391 SNF2 family DNA-depend 78.3 5.6 0.00012 43.3 6.6 106 70-201 632-751 (1958)
307 PRK08506 replicative DNA helic 78.3 5.1 0.00011 39.5 6.1 27 70-97 190-216 (472)
308 TIGR02880 cbbX_cfxQ probable R 78.2 1.3 2.8E-05 40.6 1.8 19 71-89 57-75 (284)
309 PF09439 SRPRB: Signal recogni 78.2 1.5 3.3E-05 37.6 2.1 21 72-92 3-23 (181)
310 PRK10867 signal recognition pa 78.0 13 0.00027 36.4 8.6 16 74-89 102-117 (433)
311 TIGR03880 KaiC_arch_3 KaiC dom 78.0 3.4 7.3E-05 36.0 4.4 17 71-87 15-31 (224)
312 PRK06904 replicative DNA helic 77.9 9.2 0.0002 37.7 7.8 27 70-97 219-245 (472)
313 PF07728 AAA_5: AAA domain (dy 77.8 1.4 3E-05 35.1 1.8 14 74-87 1-14 (139)
314 PRK05642 DNA replication initi 77.8 5.7 0.00012 35.1 5.8 16 73-88 46-61 (234)
315 PF00308 Bac_DnaA: Bacterial d 77.7 5.3 0.00012 35.0 5.5 25 74-99 36-60 (219)
316 PF13207 AAA_17: AAA domain; P 77.6 1.5 3.1E-05 34.0 1.7 13 75-87 2-14 (121)
317 KOG1806 DEAD box containing he 77.5 4.2 9E-05 43.5 5.4 71 53-145 735-805 (1320)
318 TIGR02655 circ_KaiC circadian 77.5 4.3 9.2E-05 40.1 5.4 18 70-87 261-278 (484)
319 TIGR02759 TraD_Ftype type IV c 77.4 2.1 4.5E-05 43.2 3.2 27 70-97 174-200 (566)
320 PRK08840 replicative DNA helic 77.2 8.5 0.00018 37.9 7.3 43 53-97 199-241 (464)
321 PRK07004 replicative DNA helic 77.1 6 0.00013 38.9 6.2 27 70-97 211-237 (460)
322 PRK11331 5-methylcytosine-spec 77.1 2.9 6.2E-05 41.1 3.9 29 60-89 183-211 (459)
323 PRK06749 replicative DNA helic 77.0 6.7 0.00014 38.2 6.5 33 64-98 179-211 (428)
324 PRK11823 DNA repair protein Ra 76.7 5.1 0.00011 39.2 5.6 24 70-94 78-101 (446)
325 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.7 2.9 6.3E-05 35.8 3.5 24 71-94 37-60 (205)
326 KOG0743 AAA+-type ATPase [Post 76.5 2.5 5.3E-05 41.2 3.3 63 29-97 194-259 (457)
327 TIGR03015 pepcterm_ATPase puta 76.4 2.7 5.9E-05 37.3 3.4 34 56-89 23-60 (269)
328 PRK08006 replicative DNA helic 76.1 9.3 0.0002 37.7 7.3 27 70-97 222-248 (471)
329 TIGR01243 CDC48 AAA family ATP 76.1 2.3 4.9E-05 44.2 3.1 54 31-88 447-503 (733)
330 KOG3064 RNA-binding nuclear pr 76.0 1.4 3.1E-05 39.6 1.4 20 32-51 73-92 (303)
331 PF13671 AAA_33: AAA domain; P 75.7 1.6 3.5E-05 34.7 1.6 13 75-87 2-14 (143)
332 PRK06893 DNA replication initi 75.7 3.7 8.1E-05 36.2 4.0 16 72-87 39-54 (229)
333 PRK08903 DnaA regulatory inact 75.4 5.3 0.00011 34.8 4.9 18 70-87 40-57 (227)
334 PF07724 AAA_2: AAA domain (Cd 75.2 3 6.5E-05 35.3 3.1 14 74-87 5-18 (171)
335 TIGR02881 spore_V_K stage V sp 74.9 2 4.3E-05 38.6 2.1 18 72-89 42-59 (261)
336 TIGR00176 mobB molybdopterin-g 74.4 5.9 0.00013 32.8 4.7 21 75-96 2-22 (155)
337 PF00625 Guanylate_kin: Guanyl 74.2 5.4 0.00012 33.6 4.5 16 71-86 1-16 (183)
338 KOG0925 mRNA splicing factor A 73.7 6.4 0.00014 39.0 5.3 54 33-87 24-77 (699)
339 PF00448 SRP54: SRP54-type pro 73.7 2.2 4.8E-05 36.9 2.0 16 75-90 4-19 (196)
340 KOG1807 Helicases [Replication 73.6 7.9 0.00017 40.4 6.0 66 60-143 382-447 (1025)
341 PF13238 AAA_18: AAA domain; P 73.4 2.2 4.7E-05 33.0 1.7 14 75-88 1-14 (129)
342 COG4185 Uncharacterized protei 73.3 1.6 3.5E-05 37.0 1.0 17 75-91 5-21 (187)
343 smart00763 AAA_PrkA PrkA AAA d 73.3 5.9 0.00013 37.7 4.9 16 72-87 78-93 (361)
344 PF03205 MobB: Molybdopterin g 73.3 5.6 0.00012 32.4 4.2 24 75-99 3-26 (140)
345 CHL00181 cbbX CbbX; Provisiona 73.2 2.6 5.6E-05 38.7 2.4 20 71-90 58-77 (287)
346 TIGR00362 DnaA chromosomal rep 73.2 8.1 0.00018 37.0 6.0 26 72-98 136-161 (405)
347 TIGR01241 FtsH_fam ATP-depende 73.1 1.7 3.6E-05 43.0 1.2 54 31-88 49-104 (495)
348 PRK05342 clpX ATP-dependent pr 73.1 3.5 7.6E-05 40.0 3.4 18 72-89 108-125 (412)
349 PF14532 Sigma54_activ_2: Sigm 72.8 5.3 0.00012 32.0 3.9 19 70-88 19-37 (138)
350 PHA00729 NTP-binding motif con 72.7 3.7 7.9E-05 36.6 3.2 23 74-97 19-41 (226)
351 TIGR02012 tigrfam_recA protein 72.7 7.1 0.00015 36.6 5.2 27 70-97 53-79 (321)
352 PRK12402 replication factor C 72.6 4.2 9E-05 37.4 3.7 16 74-89 38-53 (337)
353 PRK08769 DNA polymerase III su 72.5 20 0.00044 33.5 8.2 103 54-161 2-123 (319)
354 PRK13700 conjugal transfer pro 72.4 3.9 8.4E-05 42.4 3.6 53 43-97 157-209 (732)
355 PRK14721 flhF flagellar biosyn 72.4 9.7 0.00021 37.1 6.2 20 71-90 190-209 (420)
356 PRK00149 dnaA chromosomal repl 72.4 9.2 0.0002 37.3 6.2 24 73-97 149-172 (450)
357 PRK14087 dnaA chromosomal repl 72.3 10 0.00022 37.2 6.4 25 73-98 142-166 (450)
358 PRK00131 aroK shikimate kinase 72.1 2.6 5.6E-05 34.6 2.0 19 70-88 2-20 (175)
359 COG3598 RepA RecA-family ATPas 72.1 12 0.00026 35.3 6.5 36 60-95 77-112 (402)
360 TIGR02655 circ_KaiC circadian 71.9 7.1 0.00015 38.5 5.3 20 70-89 19-38 (484)
361 TIGR00382 clpX endopeptidase C 71.5 4.3 9.4E-05 39.4 3.6 18 72-89 116-133 (413)
362 PRK14723 flhF flagellar biosyn 71.4 8.3 0.00018 40.3 5.8 20 72-91 185-204 (767)
363 KOG0726 26S proteasome regulat 71.3 3.7 8.1E-05 38.2 2.9 55 31-89 179-236 (440)
364 COG1855 ATPase (PilT family) [ 71.3 6.6 0.00014 38.7 4.7 46 34-99 244-289 (604)
365 PRK06067 flagellar accessory p 71.1 6.6 0.00014 34.4 4.5 18 70-87 23-40 (234)
366 PRK14088 dnaA chromosomal repl 71.0 9.8 0.00021 37.1 6.0 25 73-98 131-155 (440)
367 PRK06995 flhF flagellar biosyn 70.8 12 0.00025 37.2 6.5 21 71-91 255-275 (484)
368 PRK13531 regulatory ATPase Rav 70.8 6.2 0.00013 39.1 4.5 43 45-89 14-56 (498)
369 PRK09361 radB DNA repair and r 70.7 6.8 0.00015 34.0 4.5 20 70-89 21-40 (225)
370 COG0324 MiaA tRNA delta(2)-iso 70.3 3.7 7.9E-05 38.3 2.7 22 75-97 6-27 (308)
371 PRK05201 hslU ATP-dependent pr 70.2 5.2 0.00011 39.0 3.8 15 72-86 50-64 (443)
372 PRK10078 ribose 1,5-bisphospho 70.0 3.1 6.7E-05 35.2 2.0 17 72-88 2-18 (186)
373 TIGR01243 CDC48 AAA family ATP 70.0 3 6.5E-05 43.3 2.3 53 32-88 173-228 (733)
374 TIGR02928 orc1/cdc6 family rep 69.9 4.3 9.2E-05 37.9 3.1 25 72-97 40-64 (365)
375 KOG1131 RNA polymerase II tran 69.8 20 0.00044 35.9 7.7 40 184-223 222-261 (755)
376 COG3451 VirB4 Type IV secretor 69.7 9.1 0.0002 40.3 5.7 25 73-98 437-461 (796)
377 PHA02535 P terminase ATPase su 69.6 15 0.00033 37.1 7.0 87 40-149 122-208 (581)
378 cd01363 Motor_domain Myosin an 69.3 3.7 8.1E-05 34.9 2.4 26 63-89 14-41 (186)
379 PRK11889 flhF flagellar biosyn 69.2 15 0.00032 35.8 6.6 20 72-91 241-260 (436)
380 TIGR00959 ffh signal recogniti 68.9 25 0.00055 34.2 8.3 16 74-89 101-116 (428)
381 cd03115 SRP The signal recogni 68.4 13 0.00029 30.7 5.6 14 75-88 3-16 (173)
382 PRK14530 adenylate kinase; Pro 68.4 3.3 7.2E-05 35.9 1.9 17 71-87 2-18 (215)
383 PHA02542 41 41 helicase; Provi 68.4 9.6 0.00021 37.6 5.3 26 71-97 189-214 (473)
384 PF06309 Torsin: Torsin; Inte 68.3 20 0.00043 29.0 6.2 18 72-89 51-70 (127)
385 cd00983 recA RecA is a bacter 68.2 10 0.00022 35.6 5.2 27 70-97 53-79 (325)
386 COG1223 Predicted ATPase (AAA+ 68.1 3.3 7.1E-05 38.0 1.8 17 72-88 151-167 (368)
387 KOG0388 SNF2 family DNA-depend 68.0 14 0.0003 38.4 6.3 72 69-164 583-655 (1185)
388 COG1474 CDC6 Cdc6-related prot 67.9 5.9 0.00013 37.8 3.6 17 73-89 43-59 (366)
389 PRK06321 replicative DNA helic 67.8 19 0.00041 35.6 7.2 27 70-97 224-250 (472)
390 PRK08760 replicative DNA helic 67.7 8.6 0.00019 38.0 4.9 27 70-97 227-253 (476)
391 PF00225 Kinesin: Kinesin moto 67.7 4.7 0.0001 37.5 2.9 23 70-92 71-95 (335)
392 KOG0741 AAA+-type ATPase [Post 67.6 5.8 0.00013 39.8 3.5 58 28-89 210-273 (744)
393 PRK14729 miaA tRNA delta(2)-is 67.6 3.5 7.6E-05 38.3 2.0 16 72-87 4-19 (300)
394 PF01745 IPT: Isopentenyl tran 67.5 5.5 0.00012 35.3 3.1 20 75-95 4-23 (233)
395 PF03193 DUF258: Protein of un 67.5 11 0.00024 31.7 4.8 43 43-86 2-49 (161)
396 PRK05636 replicative DNA helic 67.5 14 0.0003 36.9 6.3 26 70-96 263-288 (505)
397 TIGR02746 TraC-F-type type-IV 67.4 7.5 0.00016 40.6 4.6 18 73-90 431-448 (797)
398 PF11595 DUF3245: Protein of u 67.4 3.4 7.3E-05 34.4 1.6 7 253-259 132-138 (149)
399 TIGR03744 traC_PFL_4706 conjug 67.1 7.3 0.00016 41.5 4.5 41 72-134 475-515 (893)
400 PRK00411 cdc6 cell division co 67.0 3.8 8.1E-05 38.8 2.2 17 72-88 55-71 (394)
401 COG1444 Predicted P-loop ATPas 67.0 32 0.0007 36.0 8.9 90 41-151 199-289 (758)
402 TIGR00635 ruvB Holliday juncti 66.9 5.3 0.00012 36.4 3.1 16 73-88 31-46 (305)
403 cd01121 Sms Sms (bacterial rad 66.6 13 0.00029 35.5 5.8 19 70-88 80-98 (372)
404 PRK12422 chromosomal replicati 66.6 13 0.00028 36.4 5.8 24 73-97 142-165 (445)
405 PRK06620 hypothetical protein; 66.6 3.5 7.6E-05 36.1 1.7 17 73-89 45-61 (214)
406 TIGR00150 HI0065_YjeE ATPase, 66.4 8.7 0.00019 31.2 3.9 24 70-94 20-43 (133)
407 COG0552 FtsY Signal recognitio 66.2 18 0.00038 34.2 6.3 79 74-178 141-227 (340)
408 PRK14974 cell division protein 66.1 17 0.00038 34.2 6.4 18 73-90 141-158 (336)
409 PF00485 PRK: Phosphoribulokin 66.1 6 0.00013 33.7 3.1 12 75-86 2-13 (194)
410 KOG2373 Predicted mitochondria 66.1 3.2 6.9E-05 39.5 1.4 53 32-88 231-289 (514)
411 cd00227 CPT Chloramphenicol (C 66.0 4.4 9.6E-05 33.9 2.2 17 72-88 2-18 (175)
412 TIGR03238 dnd_assoc_3 dnd syst 66.0 5.9 0.00013 39.2 3.3 32 57-88 11-48 (504)
413 TIGR00416 sms DNA repair prote 65.7 12 0.00026 36.8 5.4 20 70-89 92-111 (454)
414 KOG0730 AAA+-type ATPase [Post 65.7 5.8 0.00013 40.5 3.2 61 25-89 422-485 (693)
415 KOG0989 Replication factor C, 65.7 4.3 9.3E-05 37.9 2.1 21 72-92 57-77 (346)
416 cd01370 KISc_KIP3_like Kinesin 65.6 7.3 0.00016 36.5 3.8 20 70-89 84-105 (338)
417 CHL00195 ycf46 Ycf46; Provisio 65.4 6.7 0.00014 38.9 3.6 55 31-89 222-276 (489)
418 TIGR01425 SRP54_euk signal rec 65.3 29 0.00063 33.9 7.9 16 74-89 102-117 (429)
419 PRK12726 flagellar biosynthesi 65.2 7.9 0.00017 37.3 3.9 20 71-90 205-224 (407)
420 PLN02165 adenylate isopentenyl 65.0 4.7 0.0001 38.0 2.3 20 70-89 41-60 (334)
421 PF00005 ABC_tran: ABC transpo 64.8 5 0.00011 31.7 2.2 18 70-87 9-26 (137)
422 PRK00300 gmk guanylate kinase; 64.4 4.3 9.3E-05 34.6 1.8 18 70-87 3-20 (205)
423 TIGR00174 miaA tRNA isopenteny 64.4 5.3 0.00011 36.8 2.5 12 75-86 2-13 (287)
424 PF03029 ATP_bind_1: Conserved 64.3 5.1 0.00011 35.7 2.4 21 77-98 1-21 (238)
425 PF13654 AAA_32: AAA domain; P 64.3 2.2 4.8E-05 42.5 0.0 83 60-148 12-102 (509)
426 PF07088 GvpD: GvpD gas vesicl 64.2 4.9 0.00011 38.9 2.3 29 70-99 8-36 (484)
427 KOG0060 Long-chain acyl-CoA tr 64.2 4.1 8.9E-05 41.0 1.8 17 70-86 459-475 (659)
428 KOG0991 Replication factor C, 64.2 6.7 0.00015 35.5 3.0 18 74-91 50-67 (333)
429 TIGR01650 PD_CobS cobaltochela 64.1 8.8 0.00019 36.1 4.0 19 70-88 62-80 (327)
430 KOG0732 AAA+-type ATPase conta 64.0 5.2 0.00011 43.0 2.6 61 31-95 259-324 (1080)
431 cd01918 HprK_C HprK/P, the bif 63.9 6 0.00013 32.9 2.5 19 70-88 12-30 (149)
432 PF13177 DNA_pol3_delta2: DNA 63.9 41 0.00088 27.9 7.6 86 73-161 20-112 (162)
433 TIGR01359 UMP_CMP_kin_fam UMP- 63.8 6.6 0.00014 32.7 2.9 14 75-88 2-15 (183)
434 TIGR00390 hslU ATP-dependent p 63.7 9 0.00019 37.4 4.0 16 73-88 48-63 (441)
435 PLN02796 D-glycerate 3-kinase 63.5 11 0.00023 35.8 4.4 14 75-88 103-116 (347)
436 cd00071 GMPK Guanosine monopho 63.4 4.2 9.1E-05 32.8 1.5 13 75-87 2-14 (137)
437 PF14516 AAA_35: AAA-like doma 63.0 19 0.00041 33.6 6.0 38 59-97 18-55 (331)
438 PRK00080 ruvB Holliday junctio 62.8 6.9 0.00015 36.3 3.0 46 35-89 23-68 (328)
439 PRK05541 adenylylsulfate kinas 62.6 8.2 0.00018 32.1 3.2 18 70-87 5-22 (176)
440 COG1203 CRISPR-associated heli 62.6 20 0.00044 37.4 6.6 57 121-181 438-503 (733)
441 TIGR03263 guanyl_kin guanylate 62.5 4.7 0.0001 33.5 1.7 16 72-87 1-16 (180)
442 TIGR02322 phosphon_PhnN phosph 62.3 5.3 0.00012 33.3 2.0 18 72-89 1-18 (179)
443 COG0396 sufC Cysteine desulfur 62.3 5.6 0.00012 35.6 2.2 22 70-91 28-50 (251)
444 PF02367 UPF0079: Uncharacteri 62.2 8.1 0.00018 31.0 2.9 25 70-95 13-37 (123)
445 PRK10689 transcription-repair 62.1 20 0.00044 39.3 6.8 92 123-220 809-908 (1147)
446 PRK05480 uridine/cytidine kina 61.7 7.7 0.00017 33.3 3.0 15 72-86 6-20 (209)
447 PRK05416 glmZ(sRNA)-inactivati 61.7 57 0.0012 30.0 8.8 17 73-89 7-23 (288)
448 PF08477 Miro: Miro-like prote 61.7 8.1 0.00018 29.4 2.8 12 75-86 2-13 (119)
449 PRK08118 topology modulation p 61.7 4.9 0.00011 33.6 1.7 14 74-87 3-16 (167)
450 COG0470 HolB ATPase involved i 61.5 47 0.001 30.0 8.3 19 72-90 23-42 (325)
451 KOG4150 Predicted ATP-dependen 61.5 22 0.00047 36.2 6.2 106 24-164 353-462 (1034)
452 cd01369 KISc_KHC_KIF5 Kinesin 61.2 4.8 0.0001 37.4 1.6 20 70-89 73-94 (325)
453 PRK07261 topology modulation p 61.0 5.6 0.00012 33.4 1.9 15 74-88 2-16 (171)
454 PF00158 Sigma54_activat: Sigm 61.0 9.9 0.00021 32.0 3.4 19 70-88 20-38 (168)
455 PRK09376 rho transcription ter 60.9 28 0.00061 33.7 6.8 18 70-87 167-184 (416)
456 PF13476 AAA_23: AAA domain; P 60.8 5.5 0.00012 33.2 1.8 16 74-89 21-36 (202)
457 PF06862 DUF1253: Protein of u 60.8 9.8 0.00021 37.2 3.7 31 119-149 33-63 (442)
458 cd03114 ArgK-like The function 60.7 14 0.00031 30.2 4.2 13 75-87 2-14 (148)
459 COG0378 HypB Ni2+-binding GTPa 60.5 9.3 0.0002 33.3 3.1 22 74-96 15-36 (202)
460 TIGR00764 lon_rel lon-related 60.4 23 0.0005 36.1 6.5 19 70-88 35-53 (608)
461 TIGR01313 therm_gnt_kin carboh 60.3 4.9 0.00011 32.9 1.4 12 75-86 1-12 (163)
462 KOG0240 Kinesin (SMY1 subfamil 60.2 7.7 0.00017 38.8 2.9 35 55-89 57-100 (607)
463 cd01376 KISc_KID_like Kinesin 60.2 5.6 0.00012 36.9 1.9 24 65-89 73-98 (319)
464 cd00820 PEPCK_HprK Phosphoenol 60.1 6.5 0.00014 30.8 2.0 22 70-91 13-34 (107)
465 TIGR00750 lao LAO/AO transport 60.0 15 0.00032 33.8 4.6 25 70-95 32-56 (300)
466 COG1136 SalX ABC-type antimicr 59.9 5.5 0.00012 35.5 1.7 18 70-87 29-46 (226)
467 KOG0742 AAA+-type ATPase [Post 59.8 5.1 0.00011 39.0 1.6 48 36-89 354-401 (630)
468 PRK04195 replication factor C 59.8 9.7 0.00021 37.5 3.6 44 35-88 12-55 (482)
469 COG1660 Predicted P-loop-conta 59.5 53 0.0012 30.1 7.9 59 75-149 4-79 (286)
470 TIGR03783 Bac_Flav_CT_G Bacter 59.5 13 0.00027 39.5 4.5 17 72-88 438-454 (829)
471 cd01368 KISc_KIF23_like Kinesi 59.4 6.2 0.00013 37.2 2.1 20 70-89 85-106 (345)
472 COG0714 MoxR-like ATPases [Gen 59.4 9.2 0.0002 35.6 3.2 19 70-88 41-59 (329)
473 cd01365 KISc_KIF1A_KIF1B Kines 59.4 6.3 0.00014 37.2 2.2 20 70-89 85-106 (356)
474 cd01373 KISc_KLP2_like Kinesin 59.3 5.9 0.00013 37.1 1.9 20 70-89 71-92 (337)
475 cd01380 MYSc_type_V Myosin mot 59.2 18 0.00038 37.6 5.5 56 35-90 42-104 (691)
476 PF03237 Terminase_6: Terminas 59.1 17 0.00036 33.2 4.9 24 76-99 1-24 (384)
477 PRK08699 DNA polymerase III su 59.0 64 0.0014 30.2 8.8 98 58-159 3-121 (325)
478 PRK09354 recA recombinase A; P 59.0 19 0.0004 34.2 5.2 24 70-94 58-81 (349)
479 PF00910 RNA_helicase: RNA hel 59.0 11 0.00024 28.9 3.1 24 75-99 1-24 (107)
480 PRK00091 miaA tRNA delta(2)-is 58.8 6.4 0.00014 36.6 2.0 16 73-88 5-20 (307)
481 KOG0729 26S proteasome regulat 58.7 12 0.00026 34.5 3.7 54 32-89 172-228 (435)
482 PRK04220 2-phosphoglycerate ki 58.7 17 0.00037 33.8 4.8 45 41-87 60-107 (301)
483 TIGR02858 spore_III_AA stage I 58.7 10 0.00022 34.5 3.3 27 62-88 99-127 (270)
484 cd03243 ABC_MutS_homologs The 58.5 11 0.00023 32.3 3.3 24 70-94 27-50 (202)
485 KOG0652 26S proteasome regulat 58.5 11 0.00024 34.6 3.4 56 31-90 165-223 (424)
486 PRK11608 pspF phage shock prot 58.4 12 0.00026 34.9 3.8 20 70-89 27-46 (326)
487 KOG0738 AAA+-type ATPase [Post 58.3 5.4 0.00012 38.5 1.4 56 32-88 181-261 (491)
488 PF04466 Terminase_3: Phage te 58.3 3.3 7.1E-05 39.7 0.0 28 73-100 3-30 (387)
489 PRK14086 dnaA chromosomal repl 58.2 25 0.00054 36.0 6.2 24 73-97 315-338 (617)
490 KOG0526 Nucleosome-binding fac 58.1 4.6 0.0001 40.0 1.0 22 73-94 205-239 (615)
491 TIGR00235 udk uridine kinase. 58.1 9.1 0.0002 32.9 2.8 16 72-87 6-21 (207)
492 PRK13873 conjugal transfer ATP 57.9 13 0.00028 39.2 4.3 34 74-129 443-476 (811)
493 COG3267 ExeA Type II secretory 57.8 37 0.0008 30.9 6.6 89 36-147 16-104 (269)
494 cd02025 PanK Pantothenate kina 57.8 9.7 0.00021 33.4 2.9 22 75-97 2-23 (220)
495 PRK08233 hypothetical protein; 57.7 6.3 0.00014 32.6 1.6 13 75-87 6-18 (182)
496 TIGR02974 phageshock_pspF psp 57.4 10 0.00023 35.4 3.2 32 57-89 8-39 (329)
497 KOG0731 AAA+-type ATPase conta 57.4 7.9 0.00017 40.4 2.5 51 35-89 309-361 (774)
498 COG1126 GlnQ ABC-type polar am 57.4 6.5 0.00014 35.0 1.7 19 69-87 25-43 (240)
499 PHA02544 44 clamp loader, smal 57.3 20 0.00042 32.8 5.0 57 75-157 46-106 (316)
500 PF03266 NTPase_1: NTPase; In 57.3 11 0.00024 31.7 3.0 23 74-97 1-23 (168)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=297.52 Aligned_cols=171 Identities=27% Similarity=0.271 Sum_probs=151.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
.|++++|++.+..+|...||+.|||||+++||.+ +.|+|++++|.|||||||||+||+|.++....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~-l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~------------- 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIA-LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ------------- 157 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhccccee-ccCCceEEEeccCCcchhhhhhHHHHHHHhcc-------------
Confidence 6888999999999999999999999999999999 99999999999999999999999999998731
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEe-CCCcchHHHHHhcCCCcccccc---------cCCc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAA-GSPLLTSEHSNRRKPNKRKRTR---------KGGE 184 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~-G~~~~~q~~~l~~~~~i~v~~~---------~~~~ 184 (284)
.......+|++|||+||||||.||..++..++..+.++++|++ |.+...|...+.++.++++.+. ....
T Consensus 158 -~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 158 -GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred -ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcc
Confidence 1345567999999999999999999999999999888665555 5599999999999999988762 2235
Q ss_pred cccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 185 DEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
+.+|.++|+||||+|++|||.|++..+++++++..+
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred ccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 779999999999999999999999999999966664
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=279.57 Aligned_cols=173 Identities=31% Similarity=0.403 Sum_probs=159.2
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
-....+|.+|++++.|++++...||..||+||+++||.+ +.|+|||+.|+||||||.||+||++++++...
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~-L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-------- 127 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVA-LGGRDVIGLAETGSGKTGAFALPILQRLLQEP-------- 127 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchh-hCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--------
Confidence 346678999999999999999999999999999999999 99999999999999999999999999998853
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc---------
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT--------- 179 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~--------- 179 (284)
..++||||+||||||.||..+++.|+..+|++|+++.|| ....|..++.+.|+|+|.+
T Consensus 128 ------------~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~ 195 (476)
T KOG0330|consen 128 ------------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLE 195 (476)
T ss_pred ------------CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHH
Confidence 348999999999999999999999999999999887766 7888899999999997766
Q ss_pred -ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 180 -RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 180 -~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
.++..+..|.+||+||||+++||.|.+..=.++..+|+++|.-|
T Consensus 196 ~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~L 240 (476)
T KOG0330|consen 196 NTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFL 240 (476)
T ss_pred hccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEE
Confidence 46667889999999999999999999999999999999998766
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=286.78 Aligned_cols=173 Identities=28% Similarity=0.363 Sum_probs=159.1
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|.+|+|+.+|+++|..+||..|||||.++||.. +-|+|++++|-||||||.||.||+|++++-..
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPva-llgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVA-LLGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHH-hhcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 458999999999999999999999999999999988 88999999999999999999999999998742
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc----------c
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR----------K 181 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~----------~ 181 (284)
......++||||||||||.||+++.+.|+.+..+.|++++|| +...|.+.|+..|||++.+. .
T Consensus 248 ------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~ 321 (691)
T KOG0338|consen 248 ------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP 321 (691)
T ss_pred ------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC
Confidence 334678999999999999999999999999999999988888 78889999999999988762 3
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
...+|.|..||+||||+|++-||..+.-.++..+|..+|+||
T Consensus 322 sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 322 SFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTML 363 (691)
T ss_pred CccccceeEEEechHHHHHHHHHHHHHHHHHHhcccccccee
Confidence 346888999999999999999999999999999999999998
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-34 Score=284.87 Aligned_cols=171 Identities=27% Similarity=0.347 Sum_probs=150.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
.+|++|+|++.++++|.++||..|||||.++||.+ +.|+|++++|+||||||+||+||+|+++....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~-l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLI-LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 68999999999999999999999999999999999 99999999999999999999999999976420
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCC-CcchHHHHHhcCCCcccccc---------cC
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------KG 182 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~~ 182 (284)
....+.||||+||||||.||++++..++.+. ++++++++|| +...|...+.++++++|.+. ..
T Consensus 96 ------~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~ 169 (513)
T COG0513 96 ------ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK 169 (513)
T ss_pred ------ccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC
Confidence 0011129999999999999999999999998 7887776665 77888888888899988762 23
Q ss_pred CccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 183 GEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 183 ~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
..++.+.++|+||||+|++|||.+++..++..+|...|..+
T Consensus 170 l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtll 210 (513)
T COG0513 170 LDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLL 210 (513)
T ss_pred cchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEE
Confidence 56889999999999999999999999999999999888766
No 5
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=295.18 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=166.2
Q ss_pred ccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 22 ~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
..+.+..+|.|+.+|.+.|++..|+..|+++||..|||||.+|||+| +.|+|||++|.||||||++|+||++.++..++
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~I-msGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAI-MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchh-ccCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 56789999999999999999999999999999999999999999999 99999999999999999999999997666553
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc
Q 042526 102 EKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR 180 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~ 180 (284)
......+|.||||+||||||.||+..++.|++.+++++++++|+ ....|+..++++.+|+|++.
T Consensus 432 ---------------~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tp 496 (997)
T KOG0334|consen 432 ---------------PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTP 496 (997)
T ss_pred ---------------ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEecc
Confidence 33456699999999999999999999999999999988777666 67788889999988877662
Q ss_pred ------------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCccc
Q 042526 181 ------------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKLN 224 (284)
Q Consensus 181 ------------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~~ 224 (284)
+.-.++|+.++|+||||+|++|||.|++..||++....+|.-+.
T Consensus 497 GRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlf 552 (997)
T KOG0334|consen 497 GRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLF 552 (997)
T ss_pred chhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhh
Confidence 22368899999999999999999999999999998777776553
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.4e-33 Score=276.20 Aligned_cols=183 Identities=21% Similarity=0.205 Sum_probs=158.3
Q ss_pred ccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 24 ~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
+.+.++|.|+.+|++++|++.|+++|.++||+.|||||.+|||.+ ++|+|+|++||||||||+||+||++.++....
T Consensus 120 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~-l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~-- 196 (545)
T PTZ00110 120 IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIA-LSGRDMIGIAETGSGKTLAFLLPAIVHINAQP-- 196 (545)
T ss_pred ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--
Confidence 468899999999999999999999999999999999999999999 99999999999999999999999999886532
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc--
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR-- 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~-- 180 (284)
......+|++|||+||||||.||+..+..|+...++++++++|+ +...|...+..+++|++.+.
T Consensus 197 -------------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgr 263 (545)
T PTZ00110 197 -------------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGR 263 (545)
T ss_pred -------------cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 11224578999999999999999999999999888888666655 66778888888999877662
Q ss_pred -------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCc
Q 042526 181 -------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKK 222 (284)
Q Consensus 181 -------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~ 222 (284)
....+.++..+|+||||+|+++||.+++..++......+|..
T Consensus 264 L~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 264 LIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred HHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 223578899999999999999999999999988776555543
No 7
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-34 Score=267.48 Aligned_cols=185 Identities=22% Similarity=0.257 Sum_probs=168.8
Q ss_pred cccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
-+.+...|.|+.+|+.++++..|+.+++..-|+.|||||.+++|.. ++|+||+.+|.||||||.||+.|++.+++.+.
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalpta-lsgrdvigIAktgSgktaAfi~pm~~himdq~- 289 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTA-LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP- 289 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccc-cccccchheeeccCcchhHHHHHHHHHhcchh-
Confidence 4678889999999999999999999999999999999999999998 99999999999999999999999999998875
Q ss_pred HHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCcee-EEEeCCCcchHHHHHhcCCCccccc--
Q 042526 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL-AMAAGSPLLTSEHSNRRKPNKRKRT-- 179 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v-~~~~G~~~~~q~~~l~~~~~i~v~~-- 179 (284)
......+|.+||||||||||.||+.++++|++..++.+ ++++|++.-.|...|..++.++|++
T Consensus 290 --------------eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPg 355 (731)
T KOG0339|consen 290 --------------ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPG 355 (731)
T ss_pred --------------hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechH
Confidence 44567899999999999999999999999999999876 5555668889999999899988776
Q ss_pred -------ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 180 -------RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 180 -------~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
.+...+.|+.+|||||||+|++|||+|||.-|....-.++|..+
T Consensus 356 Rlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtll 406 (731)
T KOG0339|consen 356 RLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLL 406 (731)
T ss_pred HHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEE
Confidence 34557889999999999999999999999999998888888877
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=269.31 Aligned_cols=177 Identities=29% Similarity=0.312 Sum_probs=163.6
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
..+..|++|+|+..++++|++.+|..||.||+.+||.. +.|+||++.|.|||||||||++|+|++|++.
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~a-L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~---------- 134 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMA-LQGHDVLGAAKTGSGKTLAFLVPVLEALYRL---------- 134 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchh-ccCcccccccccCCCceeeehHHHHHHHHHc----------
Confidence 45668999999999999999999999999999999998 9999999999999999999999999999987
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc----------c
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT----------R 180 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~----------~ 180 (284)
.+....|.-||||+||||||.|++.++.+++++.++++.+++||....-...-..+.+|+|++ .
T Consensus 135 ------kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~ 208 (758)
T KOG0343|consen 135 ------KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDEN 208 (758)
T ss_pred ------CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhc
Confidence 677788999999999999999999999999999999999999998777777777788998877 3
Q ss_pred cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCccc
Q 042526 181 KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKLN 224 (284)
Q Consensus 181 ~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~~ 224 (284)
+......|..||+||||+|+||||--..-.+++++|..+|++|=
T Consensus 209 ~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLF 252 (758)
T KOG0343|consen 209 PNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLF 252 (758)
T ss_pred CCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeee
Confidence 45567789999999999999999999999999999999999983
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=266.93 Aligned_cols=187 Identities=21% Similarity=0.209 Sum_probs=161.1
Q ss_pred ccccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 20 QEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 20 ~~~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
....+.+.++|.++.+|.+-.+.+.|+.++...||+.|||||+.+||.+ ..|+|++++|+||||||.|||+|++.+++.
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i-~~Grdl~acAqTGsGKT~aFLiPii~~~~~ 138 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPII-SGGRDLMACAQTGSGKTAAFLIPIISYLLD 138 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeecccee-ecCCceEEEccCCCcchHHHHHHHHHHHHh
Confidence 3356789999999999999999999999999999999999999999999 999999999999999999999999999988
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeC-CCcchHHHHHhcCCCcccc
Q 042526 100 EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG-SPLLTSEHSNRRKPNKRKR 178 (284)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G-~~~~~q~~~l~~~~~i~v~ 178 (284)
..... ........+|++|||+||||||.||++++++|+...++.++..|| .+...|...+.++.+|+++
T Consensus 139 ~~~~~----------~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlva 208 (482)
T KOG0335|consen 139 EGPED----------RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVA 208 (482)
T ss_pred cCccc----------CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEe
Confidence 63210 001111257999999999999999999999999888887766555 5888899999999999887
Q ss_pred cc---------cCCccccccccCCCCCCcccc-cccccchhhhcccCCC
Q 042526 179 TR---------KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEG 217 (284)
Q Consensus 179 ~~---------~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r 217 (284)
+. ....++.+.++|+||||+|+| |||.|++.+++++...
T Consensus 209 TpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~ 257 (482)
T KOG0335|consen 209 TPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGM 257 (482)
T ss_pred cCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCC
Confidence 72 233578899999999999999 9999999999997655
No 10
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-32 Score=259.97 Aligned_cols=165 Identities=27% Similarity=0.298 Sum_probs=140.8
Q ss_pred cCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 34 DAWNELRLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..|..|||++.|+..|.. |+|..||.||.+|||.+ ++|+|++|.|+||||||+||++|+++.|.....
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~l-L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---------- 204 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVL-LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---------- 204 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhh-hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----------
Confidence 469999999999999986 99999999999999999 899999999999999999999999999987532
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCcee--EEEeCCCcchHHHHHhcCCCcccccc----------
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTL--AMAAGSPLLTSEHSNRRKPNKRKRTR---------- 180 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v--~~~~G~~~~~q~~~l~~~~~i~v~~~---------- 180 (284)
......|+.||||+||||||.|+|+.+++|.+...+-| .+++|......-++|+++.+|+|.+.
T Consensus 205 ----ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT 280 (708)
T KOG0348|consen 205 ----KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT 280 (708)
T ss_pred ----cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc
Confidence 33456899999999999999999999999999876544 44555566777788999999977652
Q ss_pred cCCccccccccCCCCCCcccccccccchhhhcc
Q 042526 181 KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMN 213 (284)
Q Consensus 181 ~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~ 213 (284)
....+.+|.+|||||||+++++||.-++-.|++
T Consensus 281 ~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 281 KSIKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred chheeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 223455788999999999999999988866655
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=1.6e-32 Score=259.78 Aligned_cols=190 Identities=22% Similarity=0.193 Sum_probs=161.9
Q ss_pred cccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHH
Q 042526 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100 (284)
Q Consensus 21 ~~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~ 100 (284)
.....|..+|.|+++|++.+||.++++.|...||..|||||++|||.. ++.+|+|+.|.||||||+||++|++..+...
T Consensus 232 nis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~-lQ~rD~igvaETgsGktaaf~ipLl~~Issl 310 (673)
T KOG0333|consen 232 NISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLG-LQNRDPIGVAETGSGKTAAFLIPLLIWISSL 310 (673)
T ss_pred eeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccch-hccCCeeeEEeccCCccccchhhHHHHHHcC
Confidence 345678899999999999999999999999999999999999999988 9999999999999999999999999998775
Q ss_pred HHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc
Q 042526 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~ 179 (284)
.... .......+|+|+||+||||||+||..+...|++.+++++..++|| ....|--++..+..|++.+
T Consensus 311 P~~~-----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviat 379 (673)
T KOG0333|consen 311 PPMA-----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIAT 379 (673)
T ss_pred CCcc-----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecC
Confidence 3111 012345689999999999999999999999999999988776666 6677777888888887765
Q ss_pred c---------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCc
Q 042526 180 R---------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKK 222 (284)
Q Consensus 180 ~---------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~ 222 (284)
. ....+....++|+||||+|+||||.|++..+|+.+|-...+.
T Consensus 380 PgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~ 431 (673)
T KOG0333|consen 380 PGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKP 431 (673)
T ss_pred chHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCC
Confidence 2 122355678899999999999999999999999887665543
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.97 E-value=8.7e-32 Score=264.80 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=153.8
Q ss_pred cccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
.+.|.++|.|+.+|.+++|++.|+++|..+||..|||+|.+|||.+ +.|+|++++||||||||++|++|+|.++.....
T Consensus 110 ~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i-l~g~dviv~ApTGSGKTlayllPil~~l~~~~~ 188 (518)
T PLN00206 110 HVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA-LSGRSLLVSADTGSGKTASFLVPIISRCCTIRS 188 (518)
T ss_pred EecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEecCCCCccHHHHHHHHHHHHhhcc
Confidence 4578899999999999999999999999999999999999999999 899999999999999999999999998875321
Q ss_pred HHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc-
Q 042526 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR- 180 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~- 180 (284)
. ......++++|||+||||||.|++..++.+.+..++.+++++|+ ....|...+..++++++.+.
T Consensus 189 ~-------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPg 255 (518)
T PLN00206 189 G-------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPG 255 (518)
T ss_pred c-------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHH
Confidence 0 11223578999999999999999999999999888877666555 66667777888888877652
Q ss_pred --------cCCccccccccCCCCCCcccccccccchhhhcccCC
Q 042526 181 --------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTE 216 (284)
Q Consensus 181 --------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~ 216 (284)
....++++..+|+||||.|+++||.+++..++...+
T Consensus 256 rL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~ 299 (518)
T PLN00206 256 RLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS 299 (518)
T ss_pred HHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC
Confidence 234578899999999999999999999988877664
No 13
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.9e-32 Score=251.83 Aligned_cols=174 Identities=29% Similarity=0.395 Sum_probs=144.2
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 34 DAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 34 ~~F~~l~--L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
.+|++|+ |+++|+++|..+||..+||+|..+||.+ +.++||++.|+||||||+||++|+++.+++...
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPll-l~~KDVvveavTGSGKTlAFllP~le~i~rr~~--------- 73 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLL-LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREA--------- 73 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHH-hcCCceEEEcCCCCCchhhHHHHHHHHHHhhcc---------
Confidence 4688875 6699999999999999999999999998 999999999999999999999999999977531
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC-CCceeEEEeCC-CcchHHHHHhc-CCCcccccc--------
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS-NSLTLAMAAGS-PLLTSEHSNRR-KPNKRKRTR-------- 180 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~-~~i~v~~~~G~-~~~~q~~~l~~-~~~i~v~~~-------- 180 (284)
......+.||||+||||||.||.+++..|..+ .++++.+++|| ........++. +|+|++.+.
T Consensus 74 ------~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 74 ------KTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred ------CCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 12223578999999999999999999999988 47888776666 55555555555 577777652
Q ss_pred -cCCcc--ccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 181 -KGGED--EKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 181 -~~~~~--d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
....+ ..|..||+||||++++|||..++..|+..+|+-+.+-|
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGL 193 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGL 193 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccccccc
Confidence 11223 37888999999999999999999999999998887655
No 14
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.6e-32 Score=246.89 Aligned_cols=171 Identities=27% Similarity=0.316 Sum_probs=151.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
.+..|+.|||++||.+.|+.+|+..|||||..|||.| +.|+|+|.+|.||||||+||.+|+++++.+.+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkI-LeGrdcig~AkTGsGKT~AFaLPil~rLsedP---------- 73 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKI-LEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---------- 73 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHH-hcccccccccccCCCcchhhhHHHHHhhccCC----------
Confidence 4578999999999999999999999999999999999 99999999999999999999999999998763
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccccc---------
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTRK--------- 181 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~~--------- 181 (284)
.+..||||+||||||.||...|..+++.+++++++++|| +...|...|.++|++++.+.-
T Consensus 74 ----------~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn 143 (442)
T KOG0340|consen 74 ----------YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSN 143 (442)
T ss_pred ----------CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccC
Confidence 688999999999999999999999999999999888877 566677778888998776521
Q ss_pred ----CCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 182 ----GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 182 ----~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
--.+.++..+|+||||+|++-+|-...-.+.+-.|..+|+.+
T Consensus 144 ~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 144 LGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLL 189 (442)
T ss_pred CccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEE
Confidence 113678999999999999999887777777778888888877
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=6e-32 Score=254.45 Aligned_cols=175 Identities=29% Similarity=0.370 Sum_probs=151.3
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
.....|.++.|++.++++|.+|||+.+|+||+.+||++ +.|+|+++.|.||||||+|||||+++.+....
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pl-l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~--------- 148 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPL-LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK--------- 148 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCcc-CCCccceeeeccCCCceeeehhHHHHHHHhcc---------
Confidence 34556899999999999999999999999999999999 99999999999999999999999999998863
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCC-cchHHHHHhcCCCcccccccCC-----
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSP-LLTSEHSNRRKPNKRKRTRKGG----- 183 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~~~~----- 183 (284)
....++..+||||||||||.|++.+++.|.++. ++.|.+++||. .......+.++++|++.+ ++.
T Consensus 149 -------~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliAT-PGRLlDHl 220 (543)
T KOG0342|consen 149 -------FKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIAT-PGRLLDHL 220 (543)
T ss_pred -------cCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeC-CchHHhHh
Confidence 344578899999999999999999999999998 89998877774 444455666667776654 222
Q ss_pred ------ccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 184 ------EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 184 ------~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
....+..+|+||||+.++|||--++.+++...|+.+|+++
T Consensus 221 qNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~L 266 (543)
T KOG0342|consen 221 QNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLL 266 (543)
T ss_pred hcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeE
Confidence 2334568999999999999999999999999999999998
No 16
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.8e-32 Score=252.15 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=152.7
Q ss_pred ccCccccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHH
Q 042526 28 EISTEFDAWNE-LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK 106 (284)
Q Consensus 28 ~~p~~~~~F~~-l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~ 106 (284)
.+|.|.-+|.+ |.-.+++++++.++||..|||||++|||.+ ++|.|+++.|+||+|||++||+|-+.++..+..
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~-LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---- 287 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPIL-LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---- 287 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhccccee-ecCcceEEEEecCCCcCHHHhccceeeeeccch----
Confidence 48999999998 478899999999999999999999999998 999999999999999999999999988876543
Q ss_pred HHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccccc-----
Q 042526 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRK----- 181 (284)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~----- 181 (284)
......+|.+|||+||||||.||.-++.......-..+++++|+....|...+.++.+|++.+.-
T Consensus 288 ----------~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL 357 (629)
T KOG0336|consen 288 ----------RREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDL 357 (629)
T ss_pred ----------hhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhh
Confidence 22245789999999999999999999987765544567778888999999999999999776521
Q ss_pred ----CCccccccccCCCCCCcccccccccchhhhcccCCCCCCC
Q 042526 182 ----GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 182 ----~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~ 221 (284)
...+..+.+||+||||+|+||||.|++..+|=+....+|.
T Consensus 358 ~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 358 QMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred hhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCccee
Confidence 1246678999999999999999999999987665555553
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=4.8e-31 Score=253.38 Aligned_cols=170 Identities=24% Similarity=0.273 Sum_probs=145.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
.+|++|+|++.++++|.++||..|||||.+|||.+ +.|+|++++||||||||+||++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~i-l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~---------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLT-LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP---------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc----------
Confidence 58999999999999999999999999999999999 8999999999999999999999999998764210
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc---------cCC
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------KGG 183 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~~~ 183 (284)
......++++|||+||||||.|+++++..++...++++.+++|+ ....+...+..+++|++.+. ...
T Consensus 77 ---~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~ 153 (423)
T PRK04837 77 ---EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHI 153 (423)
T ss_pred ---cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 11123568999999999999999999999999999998777766 55666777777889877662 234
Q ss_pred ccccccccCCCCCCcccccccccchhhhcccCCC
Q 042526 184 EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEG 217 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r 217 (284)
.++++..+|+||||+|++.||..++..++...+.
T Consensus 154 ~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~ 187 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP 187 (423)
T ss_pred ccccccEEEEecHHHHhhcccHHHHHHHHHhCCC
Confidence 5788999999999999999999998888776654
No 18
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.5e-32 Score=250.28 Aligned_cols=175 Identities=27% Similarity=0.222 Sum_probs=151.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
.+|++|+|++.|++++.++||+.||.||..|||.+ +.|+||++.|.||||||+||+||+|+.++....
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIpla-LEgKDvvarArTGSGKT~AYliPllqkll~~k~----------- 86 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLA-LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKK----------- 86 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchh-hcCcceeeeeccCCCchHHHHHHHHHHHHHhhh-----------
Confidence 78999999999999999999999999999999998 999999999999999999999999999998752
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCC--ceeEEEe-CCCcchHHHHHhcCCCccccc----------c
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS--LTLAMAA-GSPLLTSEHSNRRKPNKRKRT----------R 180 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~--i~v~~~~-G~~~~~q~~~l~~~~~i~v~~----------~ 180 (284)
......+|.|+||+||||||.|+|+++..|..+.+ ++++-+. ..+...+..+|...|+|++.+ .
T Consensus 87 ---t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 87 ---TNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG 163 (569)
T ss_pred ---cccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc
Confidence 22456789999999999999999999999998875 3433333 445556668889999998866 2
Q ss_pred cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 181 KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 181 ~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
++..++.|..||.||||.|+.|||.-+...+...+||.-|.-+
T Consensus 164 ~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~L 206 (569)
T KOG0346|consen 164 VLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFL 206 (569)
T ss_pred cchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhhee
Confidence 3356788999999999999999999999999999998887655
No 19
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=3.1e-32 Score=250.43 Aligned_cols=188 Identities=23% Similarity=0.264 Sum_probs=164.5
Q ss_pred cccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
.|+|..+|+|+.+|.++.+|..|++.|++.|+.+|||||-+.||.+ ++|||+|+.|-||||||+.|.||++-..++...
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv-LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV-LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE-eecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999 999999999999999999999999998877643
Q ss_pred HHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC------CceeE-EEeCCCcchHHHHHhcCCCc
Q 042526 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN------SLTLA-MAAGSPLLTSEHSNRRKPNK 175 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~------~i~v~-~~~G~~~~~q~~~l~~~~~i 175 (284)
. .+.....+|.+||+||+||||.|++..+..+...+ .++++ |++|.+...|...++++.+|
T Consensus 238 ~------------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 238 M------------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred c------------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 2 25566789999999999999999999998876543 24554 45566999999999999999
Q ss_pred cccc---------ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 176 RKRT---------RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 176 ~v~~---------~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
++.+ .+...+|-..+|.+||||+|.||||..++.++..-...-+|+.+
T Consensus 306 vVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLL 362 (610)
T KOG0341|consen 306 VVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLL 362 (610)
T ss_pred EEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheee
Confidence 8876 24457888899999999999999999999999887766667666
No 20
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.4e-31 Score=254.66 Aligned_cols=180 Identities=27% Similarity=0.374 Sum_probs=150.6
Q ss_pred cccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHH
Q 042526 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAA 105 (284)
Q Consensus 27 ~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~ 105 (284)
+.-+..++.|.+|+||.+++++|..+||..|||||+.+||++ ..| .||++.|.|||||||||.|||+.++......+.
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~a-i~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAA-IRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHh-hccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 344677888999999999999999999999999999999999 777 899999999999999999999998877644333
Q ss_pred HHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc----
Q 042526 106 KMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---- 180 (284)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---- 180 (284)
.... ....+..+.+||++||||||+||.+.+..++.+.+++++.++|| ....|++.|...|+|+|.+.
T Consensus 253 e~~~-------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 253 ELSN-------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred hhhh-------HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 2222 11122334599999999999999999999999999999888887 77888888999999988762
Q ss_pred --------cCCccccccccCCCCCCcccccccccchhhhccc
Q 042526 181 --------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 181 --------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
-+..+..|..||+||||+|..-|.|...-++++.
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~ 367 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKH 367 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHH
Confidence 2335778999999999999999988887777663
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=5.7e-30 Score=248.31 Aligned_cols=174 Identities=23% Similarity=0.320 Sum_probs=147.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
+|++|+|++.|+++|.++||..|||+|.+|||.+ +.|+|+|++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i-l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~------------ 68 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAV-LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQP------------ 68 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHhhhccc------------
Confidence 7999999999999999999999999999999999 899999999999999999999999999865421
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc---------cCCc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------KGGE 184 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~~~~ 184 (284)
.......+++|||+||||||.|++..+..+..+.++.+..++|+ +...|...+...++|++.+. ....
T Consensus 69 --~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~ 146 (456)
T PRK10590 69 --HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVK 146 (456)
T ss_pred --ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcc
Confidence 11122356899999999999999999999999988888666665 55667777778889887762 2235
Q ss_pred cccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 185 DEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
+.++..+|+||||.|++++|+.++..++..++...|...
T Consensus 147 l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~ 185 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLL 185 (456)
T ss_pred cccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEE
Confidence 788999999999999999999999888888877766443
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=5.2e-30 Score=248.65 Aligned_cols=170 Identities=28% Similarity=0.328 Sum_probs=147.4
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
+.+|++|+|++.++++|.++||..|||+|.+|||.+ +.|+|++++||||||||+||++|+++++...
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~-l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------ 69 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAI-LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------ 69 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------------
Confidence 468999999999999999999999999999999999 8999999999999999999999999987542
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCC-CcchHHHHHhcCCCcccccc---------c
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------K 181 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~ 181 (284)
...+++|||+||||||.|++..++.++... ++++..++|+ +...|...+..++++++.+. .
T Consensus 70 --------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~ 141 (460)
T PRK11776 70 --------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG 141 (460)
T ss_pred --------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC
Confidence 135789999999999999999999998765 6888777766 66677788888889877662 2
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
...+.++..+|+||||+|+++||.++...++..++...|..+
T Consensus 142 ~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 142 TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLL 183 (460)
T ss_pred CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEE
Confidence 235778999999999999999999999988888887777544
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=9.7e-30 Score=252.76 Aligned_cols=171 Identities=23% Similarity=0.220 Sum_probs=144.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|++|+|++.|+++|.++||+.|||||.+|||.+ +.|+|++++||||||||++|++|+++++......
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~-l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~--------- 77 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVA-LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL--------- 77 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---------
Confidence 347999999999999999999999999999999998 9999999999999999999999999988753200
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc----------c
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR----------K 181 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~----------~ 181 (284)
.......+++|||+||||||.|++..+..|+...++.+.+++|+ ....|...+..+++|+|.+. .
T Consensus 78 ----~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~ 153 (572)
T PRK04537 78 ----ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK 153 (572)
T ss_pred ----cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc
Confidence 01122358999999999999999999999999999988777766 55666667777788877762 1
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCC
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEG 217 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r 217 (284)
...+..+..+|+||||.|+++||..++..++..++.
T Consensus 154 ~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~ 189 (572)
T PRK04537 154 VVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 189 (572)
T ss_pred ccchhheeeeEecCHHHHhhcchHHHHHHHHHhccc
Confidence 245677888999999999999999999888876664
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=1.1e-29 Score=254.40 Aligned_cols=170 Identities=25% Similarity=0.313 Sum_probs=148.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|.+|+|++.|+++|.++||..|||+|.++||.+ +.|+|+|++||||||||+||++|+++.+...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~l-l~g~dvl~~ApTGsGKT~af~lpll~~l~~~------------ 71 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHL-LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------------ 71 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------------
Confidence 357999999999999999999999999999999999 8999999999999999999999999987543
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCC-CcchHHHHHhcCCCcccccc---------c
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------K 181 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~ 181 (284)
...+++|||+||||||.|++..+..+..+. ++.++.++|+ +...|...+..+++|+|.|. .
T Consensus 72 --------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 72 --------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred --------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 146899999999999999999999998876 6777666555 67778888888899988772 2
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
...+..|..+|+||||.|+++||..++..++..+|...|..+
T Consensus 144 ~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 144 TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEE
Confidence 234778899999999999999999999999998888887655
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=3.4e-29 Score=241.12 Aligned_cols=170 Identities=27% Similarity=0.343 Sum_probs=144.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
+|++|+|++.|+++|.++||..||++|.+|||.+ +.|+|++++||||||||++|++|+++++....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~-~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~------------- 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPA-LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP------------- 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 7999999999999999999999999999999999 89999999999999999999999999887531
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc---------cCCc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------KGGE 184 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~~~~ 184 (284)
......+++|||+||||||.|+++.+..++...++.+..++|+ ....+...+..+++|++.+. ....
T Consensus 68 ---~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 68 ---RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred ---ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcC
Confidence 1122457899999999999999999999999999999888876 56666667777888877763 2234
Q ss_pred cccccccCCCCCCcccccccccchhhhcccCCCCCCC
Q 042526 185 DEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~ 221 (284)
+..+..+|+||||+|+++||...+..+...++...|.
T Consensus 145 ~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~ 181 (434)
T PRK11192 145 CRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 181 (434)
T ss_pred cccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEE
Confidence 6788999999999999999998887776665554443
No 26
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-29 Score=225.64 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=147.2
Q ss_pred cccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHH
Q 042526 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK 106 (284)
Q Consensus 27 ~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~ 106 (284)
+.--.++.+|+++||.+.|++++++.||+.|+.||+.|||+| +.|+|||++|++|+|||.+|.+.+++.+....
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~I-lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~----- 93 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQI-LKGRDVIAQAQSGTGKTATFSISVLQSLDISV----- 93 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhh-hcccceEEEecCCCCceEEEEeeeeeeccccc-----
Confidence 344567889999999999999999999999999999999999 99999999999999999999999998775542
Q ss_pred HHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc------
Q 042526 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT------ 179 (284)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~------ 179 (284)
...+||||+||||||.||..++..|+.++++.+..+.|| +....+..+..+.+.+..+
T Consensus 94 ---------------r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~d 158 (400)
T KOG0328|consen 94 ---------------RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLD 158 (400)
T ss_pred ---------------ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHH
Confidence 357999999999999999999999999999999766665 5566666666666554432
Q ss_pred ---ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 180 ---RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 180 ---~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
+.......+..||+||||.|++-||-.|...+...+|.+.|
T Consensus 159 mikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Q 202 (400)
T KOG0328|consen 159 MIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQ 202 (400)
T ss_pred HHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCce
Confidence 11123456888999999999999999999988888888887
No 27
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.3e-29 Score=231.00 Aligned_cols=171 Identities=25% Similarity=0.319 Sum_probs=153.3
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|..+||+..++++|.+.||..|||||+.+||.| +.|+|++..|.||||||.||+||+++++....
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipli-Le~~dvv~martgsgktaaf~ipm~e~Lk~~s----------- 87 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLI-LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----------- 87 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccce-eeccccceeeecCCcchhhHHHHHHHHHhhcc-----------
Confidence 568999999999999999999999999999999999 99999999999999999999999999987642
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeC-CCcchHHHHHhcCCCcccccc---------cC
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG-SPLLTSEHSNRRKPNKRKRTR---------KG 182 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G-~~~~~q~~~l~~~~~i~v~~~---------~~ 182 (284)
..+.+|||++||||||.|+.++++.+++.+++++++++| .....|-..+..+||+++.+. ..
T Consensus 88 --------~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~ 159 (529)
T KOG0337|consen 88 --------QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT 159 (529)
T ss_pred --------ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee
Confidence 368899999999999999999999999999998876555 567788888888999988552 12
Q ss_pred CccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 183 GEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 183 ~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
..+.-+.|+||||||+++.|||.++.-.++.+.|..+|+.+
T Consensus 160 l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTll 200 (529)
T KOG0337|consen 160 LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLL 200 (529)
T ss_pred ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEE
Confidence 35778899999999999999999999999999999998776
No 28
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-29 Score=228.25 Aligned_cols=171 Identities=21% Similarity=0.293 Sum_probs=148.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
.-..|++++|.++|+..+.++||+.|+|||.++||.+ +.|+|+++.|.+|+|||.||++|+|+++....
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPia-LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~---------- 151 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIA-LTGRDILARAKNGTGKTAAYCIPVLEKIDPKK---------- 151 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCcccccccee-ecchhhhhhccCCCCCccceechhhhhcCccc----------
Confidence 3445999999999999999999999999999999998 99999999999999999999999999886653
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc--ccCC-----
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT--RKGG----- 183 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~--~~~~----- 183 (284)
...+++||+||||||.|+..++..+++++++.|.+.+|| +....+.++...+++++.+ +++|
T Consensus 152 ----------~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 152 ----------NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred ----------cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 578999999999999999999999999999999777766 5555555666666665544 2222
Q ss_pred --ccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 184 --EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 184 --~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
.++....+|+||||.+++..|-+.+-+++.-+|+.+|-.+
T Consensus 222 Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQill 263 (459)
T KOG0326|consen 222 VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILL 263 (459)
T ss_pred cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeE
Confidence 3556677999999999999999999999999999999776
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.5e-27 Score=232.48 Aligned_cols=174 Identities=25% Similarity=0.271 Sum_probs=144.2
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
....+|.+++|++.|+++|.++||..||++|.+|||.+ +.|+|+|++||||||||+||++|+++.+......
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~-~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~------- 155 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYT-LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP------- 155 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-------
Confidence 33467999999999999999999999999999999999 9999999999999999999999999998764210
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhc-CCCcccccc--------
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRR-KPNKRKRTR-------- 180 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~-~~~i~v~~~-------- 180 (284)
.......+++|||+|||+||.|+++.++.|.+.+++.+..++|+ ....|...+.. .+++++.+.
T Consensus 156 ------~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~ 229 (475)
T PRK01297 156 ------KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQ 229 (475)
T ss_pred ------cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 01112368999999999999999999999999999888777666 55666666654 477776652
Q ss_pred -cCCccccccccCCCCCCcccccccccchhhhcccCCCC
Q 042526 181 -KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGK 218 (284)
Q Consensus 181 -~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~ 218 (284)
....+.++..+|+||||.+.+++|++.+..++...+..
T Consensus 230 ~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 268 (475)
T PRK01297 230 RGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK 268 (475)
T ss_pred cCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC
Confidence 12357789999999999999999999998888877653
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.93 E-value=6.2e-26 Score=231.26 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=133.7
Q ss_pred ccccCccccCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 26 EAEISTEFDAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 26 ~~~~p~~~~~F~~l~--L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
...+|..-..|..++ |++.|.++|.++||+.||++|.+|||.+ +.|+|++++||||||||+||++|+|+.+...
T Consensus 4 ~~~~p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~i-l~G~nvvv~apTGSGKTla~~LPiL~~l~~~--- 79 (742)
T TIGR03817 4 VEHLPARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELA-HAGRHVVVATGTASGKSLAYQLPVLSALADD--- 79 (742)
T ss_pred eeecCCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHH-HCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---
Confidence 345666666666663 8999999999999999999999999999 9999999999999999999999999988653
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--- 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--- 180 (284)
.++++|||+||||||.|++..++.++ ..++++.+++|+....|...++.++++++.+.
T Consensus 80 ------------------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L 140 (742)
T TIGR03817 80 ------------------PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDML 140 (742)
T ss_pred ------------------CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHH
Confidence 35789999999999999999999997 45788888999888888778888888877653
Q ss_pred ---cC-------CccccccccCCCCCCcccccccccch
Q 042526 181 ---KG-------GEDEKLDSLKWNPLSQPKTTTLLPSS 208 (284)
Q Consensus 181 ---~~-------~~~d~l~~lv~dEAd~m~~~gflp~~ 208 (284)
.+ ..+.+|.++|+||||.|.++ |-+.+
T Consensus 141 ~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg~~~ 177 (742)
T TIGR03817 141 HRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGSHV 177 (742)
T ss_pred HHhhccchhHHHHHHhcCCEEEEeChhhccCc-cHHHH
Confidence 11 12678999999999999763 55554
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-26 Score=213.00 Aligned_cols=189 Identities=23% Similarity=0.300 Sum_probs=157.9
Q ss_pred CCCCccccccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHH
Q 042526 14 NGPDDAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPA 93 (284)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPi 93 (284)
+++...+.+.+.+++.-.-+.+|.+++|++.|++.++.+||+.||.||+.||+++ ..|.|++++|++|||||.||++++
T Consensus 6 ~g~~~~e~~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~-i~G~dv~~qaqsgTgKt~af~i~i 84 (397)
T KOG0327|consen 6 NGPDGMEPEGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPC-IKGHDVIAQAQSGTGKTAAFLISI 84 (397)
T ss_pred CCCcccCccccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhcccccc-ccCCceeEeeeccccchhhhHHHH
Confidence 4455555567778888888899999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeC-CCcchHHHHHhc-
Q 042526 94 LQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG-SPLLTSEHSNRR- 171 (284)
Q Consensus 94 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G-~~~~~q~~~l~~- 171 (284)
++.+.-.. ...+|||++||||||.|+..+...+..+++++|+.++| .....+..++..
T Consensus 85 Lq~iD~~~--------------------ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~ 144 (397)
T KOG0327|consen 85 LQQIDMSV--------------------KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKD 144 (397)
T ss_pred HhhcCcch--------------------HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhcc
Confidence 99885432 24679999999999999999999999999999976655 466646555555
Q ss_pred CCCcccccc--cC-------CccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 172 KPNKRKRTR--KG-------GEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 172 ~~~i~v~~~--~~-------~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
.+++++.++ +. ...+.+...++||||+|+..||..++..+...+|..-|--+
T Consensus 145 ~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l 205 (397)
T KOG0327|consen 145 KPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVL 205 (397)
T ss_pred CceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhee
Confidence 477766553 22 24456788999999999999999999999888887776444
No 32
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=2.5e-25 Score=211.51 Aligned_cols=168 Identities=21% Similarity=0.236 Sum_probs=138.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
...+|++|+|++.++++|.++||..|||+|.+|||.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i-~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------- 93 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPI-LDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------- 93 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----------
Confidence 4578999999999999999999999999999999999 9999999999999999999999999876431
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccccc---------
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTRK--------- 181 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~~--------- 181 (284)
..+.++|||+|||+||.|++..+..++...++.+..++|+ ....+...+..++++++.+.-
T Consensus 94 ---------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 164 (401)
T PTZ00424 94 ---------LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR 164 (401)
T ss_pred ---------CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC
Confidence 1357899999999999999999999998888877666665 455555666777788776531
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
...++++..+|+|||+.+.+.+|......++...+...+
T Consensus 165 ~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 165 HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcE
Confidence 235788999999999999988887766666655544443
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.8e-24 Score=202.18 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=124.6
Q ss_pred ccCcccCCCCHHHHHH----------HHHcCCCCCcHHHHHHHHHHH--------cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 33 FDAWNELRLHPLLMKS----------IYKLGFKESTSILKARIPALA--------HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~----------L~~~g~~~pT~iQ~~aip~il--------~~G~dviv~A~TGSGKTlafllPil 94 (284)
..-|+.++++..+... |..|++++.+|||.+++|.++ +.++||++.||||||||+||.|||+
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3447888877655544 899999999999999999873 3478999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc-chHHHHHhcCC
Q 042526 95 QRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL-LTSEHSNRRKP 173 (284)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~-~~q~~~l~~~~ 173 (284)
+.+... .....+||||+|||+||.||++++.++....|+.|+++.|..+ .....+|...+
T Consensus 206 Q~L~~R-------------------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 206 QLLSSR-------------------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred HHHccC-------------------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 987653 2356899999999999999999999999999999999999854 44445555554
Q ss_pred -----Cccccc----------ccCCccccccccCCCCCCccccccc
Q 042526 174 -----NKRKRT----------RKGGEDEKLDSLKWNPLSQPKTTTL 204 (284)
Q Consensus 174 -----~i~v~~----------~~~~~~d~l~~lv~dEAd~m~~~gf 204 (284)
||++.+ .+...|..|.+||.||||+|++..|
T Consensus 267 ~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 267 PECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred CccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHH
Confidence 454443 3455688899999999999888765
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=4.1e-23 Score=178.49 Aligned_cols=166 Identities=32% Similarity=0.405 Sum_probs=136.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042526 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEA 115 (284)
Q Consensus 36 F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~ 115 (284)
|+++++++.+.+.|.++||+.|+++|.++|+.+ +.|+|+++.||||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~-~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPL-LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 789999999999999999999999999999999 88999999999999999999999999887751
Q ss_pred hhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcc-hHHHHHhcCCCcccccc---------cCCcc
Q 042526 116 EKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLL-TSEHSNRRKPNKRKRTR---------KGGED 185 (284)
Q Consensus 116 ~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~-~q~~~l~~~~~i~v~~~---------~~~~~ 185 (284)
...++++||++||++|+.|+...++.+....++.+..+.|+... .....+..+.++++.+. ....+
T Consensus 66 ----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~ 141 (203)
T cd00268 66 ----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDL 141 (203)
T ss_pred ----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCCh
Confidence 12478999999999999999999999988888888888776544 33344444667766552 11346
Q ss_pred ccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 186 EKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 186 d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
..+..+++||++.|.+.+|......++...+++.+
T Consensus 142 ~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~ 176 (203)
T cd00268 142 SKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQ 176 (203)
T ss_pred hhCCEEEEeChHHhhccChHHHHHHHHHhCCcccE
Confidence 77889999999999988888777766666555443
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.90 E-value=1.2e-24 Score=210.46 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=149.1
Q ss_pred cccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHH
Q 042526 25 NEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104 (284)
Q Consensus 25 ~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~ 104 (284)
+++-.|....+|++|.|..+++..|++.+|..||+||..|||.+ +.+.|+|++|.+|+|||+.|.+.+++.+...
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~-~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---- 90 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAI-FSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---- 90 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhh-hcccceEEEecCCCCceEEEEeeeehhcCcc----
Confidence 44456778889999999999999999999999999999999999 9999999999999999999999998876553
Q ss_pred HHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCcchHHHHHhcCCCcccccc---
Q 042526 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--- 180 (284)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--- 180 (284)
...++++||+||||+|.||.+.+..++..+ |++|.+++||....+...-.+...|++.+.
T Consensus 91 ----------------~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi 154 (980)
T KOG4284|consen 91 ----------------SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRI 154 (980)
T ss_pred ----------------cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHH
Confidence 367999999999999999999999999865 899999999988887777777777665541
Q ss_pred ------cCCccccccccCCCCCCcccccc-cccchhhhcccCCCCCCC
Q 042526 181 ------KGGEDEKLDSLKWNPLSQPKTTT-LLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 181 ------~~~~~d~l~~lv~dEAd~m~~~g-flp~~~~~~~~~~r~~~~ 221 (284)
.......|.-+||||||++.+.+ |--++-.+++.+|..+|=
T Consensus 155 ~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv 202 (980)
T KOG4284|consen 155 AQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQV 202 (980)
T ss_pred HHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhhee
Confidence 11234467779999999977744 888888888888887763
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.9e-24 Score=204.30 Aligned_cols=180 Identities=26% Similarity=0.294 Sum_probs=142.9
Q ss_pred ccccccccccCccccCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 20 QEELVNEAEISTEFDAWNEL----RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 20 ~~~~~~~~~~p~~~~~F~~l----~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
....+.|.++|.|+-+|.+| ..++.|++++...||..|||+|.+|||.+ +.++|+++|||||||||+||++|+++
T Consensus 118 ~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvf-l~~r~~lAcapTGsgKtlaf~~Pil~ 196 (593)
T KOG0344|consen 118 NKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVF-LEKRDVLACAPTGSGKTLAFNLPILQ 196 (593)
T ss_pred ceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhh-hcccceEEeccCCCcchhhhhhHHHH
Confidence 34568899999999999984 69999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh--cCCCceeEEEeCCCcchHHH------
Q 042526 96 RLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL--KSNSLTLAMAAGSPLLTSEH------ 167 (284)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~--~~~~i~v~~~~G~~~~~q~~------ 167 (284)
+|.... ......+.+++||.||||||.|++.++..+. ...++.++.+.......|..
T Consensus 197 ~L~~~~---------------~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~ 261 (593)
T KOG0344|consen 197 HLKDLS---------------QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDE 261 (593)
T ss_pred HHHHhh---------------cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHH
Confidence 987764 2344578999999999999999999999999 66666666655543333311
Q ss_pred ---HHhcCCCcccccc----cCCccccccccCCCCCCccccc-ccccchhhhcccC
Q 042526 168 ---SNRRKPNKRKRTR----KGGEDEKLDSLKWNPLSQPKTT-TLLPSSLALMNLT 215 (284)
Q Consensus 168 ---~l~~~~~i~v~~~----~~~~~d~l~~lv~dEAd~m~~~-gflp~~~~~~~~~ 215 (284)
.+...|.-++... ..+.+..|.++|+||||+++.- +|.-|.-+++..+
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac 317 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSAC 317 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHh
Confidence 1222222222222 2357889999999999998887 8888887666543
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=6.1e-24 Score=186.95 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=151.7
Q ss_pred cccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
...|+++....+.|.++-|.|+|++++-+.||++|+.+|..|||.. .-|.||+++|.+|.|||..|.|..|+.+-..
T Consensus 31 d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqa-ilgmdvlcqaksgmgktavfvl~tlqqiepv-- 107 (387)
T KOG0329|consen 31 DKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-- 107 (387)
T ss_pred cccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHH-hhcchhheecccCCCceeeeehhhhhhcCCC--
Confidence 4566677777888999999999999999999999999999999998 6799999999999999999999998876443
Q ss_pred HHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCC-CcchHHHHHhcCCCccccc-
Q 042526 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGS-PLLTSEHSNRRKPNKRKRT- 179 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~- 179 (284)
.+.+.+||+|.|||||.||.+++.+|++++ ++++++++|| ++......+.+-|+|++.+
T Consensus 108 ------------------~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTP 169 (387)
T KOG0329|consen 108 ------------------DGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTP 169 (387)
T ss_pred ------------------CCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCc
Confidence 356889999999999999999999999998 6888887777 6777777777778887755
Q ss_pred --------ccCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCCCcc
Q 042526 180 --------RKGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 180 --------~~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~~~~ 223 (284)
.+...+..+.+.|+||.|.|+. ...--++..+...+|...|-|-
T Consensus 170 GrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmm 222 (387)
T KOG0329|consen 170 GRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 222 (387)
T ss_pred HHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeee
Confidence 2345688999999999998654 3366677777778888887554
No 38
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.8e-24 Score=195.15 Aligned_cols=175 Identities=24% Similarity=0.276 Sum_probs=142.0
Q ss_pred ccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQ--RKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 22 ~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
..++.+..-.++.+|++|+|.|+|+++|+.|+|..||.||..|+|.+ +. -+++|++|++|||||.||.|.+|.++..
T Consensus 78 k~~dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll-l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~ 156 (477)
T KOG0332|consen 78 KLADPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL-LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP 156 (477)
T ss_pred eecCCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh-hcCCchhhhhhhcCCCchhHHHHHHHHHhcCc
Confidence 34444444467789999999999999999999999999999999998 44 5799999999999999999999998765
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCc----
Q 042526 100 EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNK---- 175 (284)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i---- 175 (284)
. ...|+++.|+||||||.|+..++...+++.++++..+.-+. ...++..+
T Consensus 157 ~--------------------~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s------k~~rG~~i~eqI 210 (477)
T KOG0332|consen 157 D--------------------VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS------KAKRGNKLTEQI 210 (477)
T ss_pred c--------------------ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCc------ccccCCcchhhe
Confidence 4 35899999999999999999999999999888776655433 11112111
Q ss_pred cc----------ccccCCccccccccCCCCCCcccccc-cccchhhhcccCCCCCCCcc
Q 042526 176 RK----------RTRKGGEDEKLDSLKWNPLSQPKTTT-LLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 176 ~v----------~~~~~~~~d~l~~lv~dEAd~m~~~g-flp~~~~~~~~~~r~~~~~~ 223 (284)
++ ..++...+..+..+||||||.|++.. |-.++++++...|+..|-.+
T Consensus 211 viGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllL 269 (477)
T KOG0332|consen 211 VIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLL 269 (477)
T ss_pred eeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEe
Confidence 11 11344567788999999999988765 99999999999998888776
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.85 E-value=4.6e-21 Score=195.61 Aligned_cols=160 Identities=17% Similarity=0.092 Sum_probs=129.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
+|++++|++.+++.|.++||+.|+|+|.+||+..++.|+|++++||||||||++|.+|++..+...
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 689999999999999999999999999999997448999999999999999999999999877542
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCcc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGED 185 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~ 185 (284)
+.++|||+|||+||.|++..+..+. ..+++|..++|+.... ......+++++.+. ....+
T Consensus 68 --------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~--~~~~~~~~IiV~Tpe~~~~ll~~~~~~l 136 (720)
T PRK00254 68 --------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDST--DEWLGKYDIIIATAEKFDSLLRHGSSWI 136 (720)
T ss_pred --------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCc--hhhhccCCEEEEcHHHHHHHHhCCchhh
Confidence 4589999999999999999998875 3688998888875433 22345678776651 11346
Q ss_pred ccccccCCCCCCcccccccccchhhhcccCCCCC
Q 042526 186 EKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKP 219 (284)
Q Consensus 186 d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~ 219 (284)
.+|..+|+||++.+.+.++-+....++..+....
T Consensus 137 ~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 137 KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 7899999999999988777666655555444333
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=4.7e-21 Score=195.96 Aligned_cols=148 Identities=17% Similarity=0.076 Sum_probs=122.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
.|++|+||+.++++|.+.||..|+|+|.+||+..++.|+|++++||||||||++|.+|++..+..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 68999999999999999999999999999999855899999999999999999999999987742
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCcc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGED 185 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~ 185 (284)
+.++|||+|||+||.|++..++.+.. .++++.+++|+..... .....++|++.+. ....+
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~--~~l~~~~IiV~Tpek~~~llr~~~~~l 135 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD--EWLGDNDIIVATSEKVDSLLRNGAPWL 135 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc--cccCCCCEEEECHHHHHHHHhcChhhh
Confidence 35799999999999999999998764 4888988888754332 2334567766652 11346
Q ss_pred ccccccCCCCCCcccccccccch
Q 042526 186 EKLDSLKWNPLSQPKTTTLLPSS 208 (284)
Q Consensus 186 d~l~~lv~dEAd~m~~~gflp~~ 208 (284)
..+..+|+||++++.+.++-+..
T Consensus 136 ~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 136 DDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred hhcCEEEEECccccCCCcchHHH
Confidence 78899999999999876665444
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.82 E-value=2.9e-20 Score=189.00 Aligned_cols=139 Identities=13% Similarity=-0.039 Sum_probs=112.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEE-E
Q 042526 52 LGFKESTSILKARIPALAHQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI-I 129 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLI-L 129 (284)
+||+ |||+|.++||.+ +.|+ +++++||||||||.+|+++++.. .. ....|++|| +
T Consensus 12 ~G~~-PtpiQ~~~i~~i-l~G~~~v~~~apTGSGKTaa~aafll~~-~~--------------------~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERF-VAGQPPESCSTPTGLGKTSIIAAWLLAV-EI--------------------GAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHH-HcCCCcceEecCCCCcccHHHHHhhccc-cc--------------------cccccceEEEe
Confidence 6998 999999999999 8898 68889999999999777665532 11 124577887 5
Q ss_pred ecCHHHHHHHHHHHhhhhcCC-----------------------CceeEEEeCC-CcchHHHHHhcCCCcccccc-----
Q 042526 130 NPTRELALQVLMVASPSLKSN-----------------------SLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR----- 180 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~~~-----------------------~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~----- 180 (284)
+||||||.|++++++.+++.+ .+++++++|| +...|...+..+++|+|.|.
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~s 148 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGS 148 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcC
Confidence 599999999999999999865 3777776666 67789999999999988773
Q ss_pred cCC----------------ccccccccCCCCCCcccccccccchhhhcccC
Q 042526 181 KGG----------------EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLT 215 (284)
Q Consensus 181 ~~~----------------~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~ 215 (284)
... .+.++..+|||||| +++||..++..++...
T Consensus 149 r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l 197 (844)
T TIGR02621 149 RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQ 197 (844)
T ss_pred CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhc
Confidence 111 25788999999999 7899999999998854
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=8.1e-20 Score=189.66 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
|++.+.+.+.+ +|..|||+|.+|||.+ +.|+|++++||||||||+||++|+++.+..... ....
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~i-l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~--------------~~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLI-HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGR--------------EGEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHH-HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcc--------------ccCC
Confidence 67777777665 8999999999999998 999999999999999999999999998875421 1112
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhh-------hh----cCC-CceeEEEeCCCcchHH-HHHhcCCCccccccc------
Q 042526 121 KGHLRALIINPTRELALQVLMVASP-------SL----KSN-SLTLAMAAGSPLLTSE-HSNRRKPNKRKRTRK------ 181 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~-------l~----~~~-~i~v~~~~G~~~~~q~-~~l~~~~~i~v~~~~------ 181 (284)
..++++|||+|||+||.|++..+.. ++ ... ++++++.+|+....+. ..+...++|++++.-
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 3578999999999999999886653 22 223 6778888887655444 455567888776521
Q ss_pred -----CCccccccccCCCCCCcccccc
Q 042526 182 -----GGEDEKLDSLKWNPLSQPKTTT 203 (284)
Q Consensus 182 -----~~~~d~l~~lv~dEAd~m~~~g 203 (284)
...+.++..+|+||++.+.+..
T Consensus 162 ~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 162 NSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred cChhHHHHHhcCCEEEEechhhhccCc
Confidence 0135688999999999988643
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.79 E-value=1.2e-19 Score=192.00 Aligned_cols=139 Identities=18% Similarity=0.044 Sum_probs=104.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+ .||++|..+||.+ +.|+|++++||||||||+ |++|++..+.. .++++|||+|
T Consensus 77 ~G~-~pt~iQ~~~i~~i-l~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~alIL~P 131 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRL-LLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKSYIIFP 131 (1176)
T ss_pred cCC-CCcHHHHHHHHHH-HCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeEEEEec
Confidence 578 7999999999998 999999999999999995 77776654422 2678999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCc------chHHHHHhc-CCCcccccc-------cCCccccccccCCCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPL------LTSEHSNRR-KPNKRKRTR-------KGGEDEKLDSLKWNPLS 197 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~------~~q~~~l~~-~~~i~v~~~-------~~~~~d~l~~lv~dEAd 197 (284)
||+||.|++..++.++...++.+.+++|+.. ..+...+.+ .++|++.+. ......++..+|+||||
T Consensus 132 TreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD 211 (1176)
T PRK09401 132 TRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVD 211 (1176)
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChH
Confidence 9999999999999999988888766655432 222334444 478877662 11234568889999999
Q ss_pred cccc-----------ccccc-chhhhcccC
Q 042526 198 QPKT-----------TTLLP-SSLALMNLT 215 (284)
Q Consensus 198 ~m~~-----------~gflp-~~~~~~~~~ 215 (284)
.|++ +||.. ++..++..+
T Consensus 212 ~~L~~~k~id~~l~~lGF~~~~i~~i~~~i 241 (1176)
T PRK09401 212 AVLKSSKNIDKLLYLLGFSEEDIEKAMELI 241 (1176)
T ss_pred HhhhcccchhhHHHhCCCCHHHHHHHHHhc
Confidence 9986 89974 444444443
No 44
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=4.6e-19 Score=180.33 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=111.7
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHH
Q 042526 37 NELRLHPLLMKSIY-----KLGFKES---TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108 (284)
Q Consensus 37 ~~l~L~~~Ll~~L~-----~~g~~~p---T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~ 108 (284)
+.|++.+++...+. .+||..| ||+|.++||.+ ..++|+|++++||||||+||++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i-~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAI-AMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhh-hcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 45678999998887 6899999 99999999999 8899999999999999999999999877542
Q ss_pred hhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccccCC----
Q 042526 109 EEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTRKGG---- 183 (284)
Q Consensus 109 ~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~~~~---- 183 (284)
..++||+|||+||.|+++++..+.+++++++++++|+ +...|...+ +++|++.|..-.
T Consensus 136 ---------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDy 198 (970)
T PRK12899 136 ---------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDY 198 (970)
T ss_pred ---------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHH
Confidence 1389999999999999999999999999999887776 444444333 588876653211
Q ss_pred ------ccc-------cccccCCCCCCcccc
Q 042526 184 ------EDE-------KLDSLKWNPLSQPKT 201 (284)
Q Consensus 184 ------~~d-------~l~~lv~dEAd~m~~ 201 (284)
.++ .+.++++||||.|+.
T Consensus 199 Lrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 199 LRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 111 235789999999764
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.77 E-value=1.8e-18 Score=175.41 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=116.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
.|++|+|++.+++.+...+|. ++|+|.+|++.+ ..|+|++++||||||||++|.++++..+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 688999999999999999998 999999999998 999999999999999999999999876643
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCcc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGED 185 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~ 185 (284)
+.++|||+|||+||.|+++.+.++. ..++.+...+|+.... ....+.+++++.+. ....+
T Consensus 65 --------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~--~~~~~~~dIiv~Tpek~~~l~~~~~~~l 133 (674)
T PRK01172 65 --------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDP--PDFIKRYDVVILTSEKADSLIHHDPYII 133 (674)
T ss_pred --------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCC--hhhhccCCEEEECHHHHHHHHhCChhHH
Confidence 3479999999999999999999875 3678888887765432 12335567766552 11236
Q ss_pred ccccccCCCCCCccccccccc
Q 042526 186 EKLDSLKWNPLSQPKTTTLLP 206 (284)
Q Consensus 186 d~l~~lv~dEAd~m~~~gflp 206 (284)
.++..+|+||++++.+.++-+
T Consensus 134 ~~v~lvViDEaH~l~d~~rg~ 154 (674)
T PRK01172 134 NDVGLIVADEIHIIGDEDRGP 154 (674)
T ss_pred hhcCEEEEecchhccCCCccH
Confidence 778899999999987655443
No 46
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.76 E-value=1.3e-18 Score=184.18 Aligned_cols=140 Identities=19% Similarity=0.037 Sum_probs=104.5
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCe
Q 042526 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL 124 (284)
Q Consensus 45 Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (284)
+.+.+.+.....||++|+.+||.+ +.|+|++++||||||||+ |++|++..+.. .++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~i-l~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~g~ 122 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRV-LRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------------------KGK 122 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHH-hCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------------------cCC
Confidence 444455544457999999999998 999999999999999996 77888765432 257
Q ss_pred EEEEEecCHHHHHHHHHHHhhhhcCCCceeE---EEeCCCcc-hHH---HHHhc-CCCcccccccC-----Cccc-cccc
Q 042526 125 RALIINPTRELALQVLMVASPSLKSNSLTLA---MAAGSPLL-TSE---HSNRR-KPNKRKRTRKG-----GEDE-KLDS 190 (284)
Q Consensus 125 ~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~---~~~G~~~~-~q~---~~l~~-~~~i~v~~~~~-----~~~d-~l~~ 190 (284)
++|||+|||+||.|++..++.++...++.+. +++|+... .+. ..+.. .++|++.+.-. ..+. ++..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~ 202 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDF 202 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCE
Confidence 8999999999999999999999988776543 45566433 332 23344 47887766211 1122 6779
Q ss_pred cCCCCCCcccc-----------cccccch
Q 042526 191 LKWNPLSQPKT-----------TTLLPSS 208 (284)
Q Consensus 191 lv~dEAd~m~~-----------~gflp~~ 208 (284)
+++||||+|++ +||.++.
T Consensus 203 iVvDEaD~~L~~~k~vd~il~llGF~~e~ 231 (1171)
T TIGR01054 203 IFVDDVDALLKASKNVDKLLKLLGFSEEL 231 (1171)
T ss_pred EEEeChHhhhhccccHHHHHHHcCCCHHH
Confidence 99999999998 8998864
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=174.51 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
|++.+.+.+... |+.|||+|.+|||.| .+|+|+++.||||||||+|.+||+++.+.... ....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i-~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~~ 70 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEI-HSGENVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGKL 70 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHH-hCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCCC
Confidence 899999999988 999999999999999 89999999999999999999999999998851 1234
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhc-CCCccccccc-----------CCccccc
Q 042526 121 KGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRR-KPNKRKRTRK-----------GGEDEKL 188 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~-~~~i~v~~~~-----------~~~~d~l 188 (284)
..++.+|+|+|.|+|+..+...+..++..+|+.+.+-.|+....+.+...+ .|||+++|.- ...+..|
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 467999999999999999999999999999999999899866666555555 4777766521 1235678
Q ss_pred cccCCCCCCc
Q 042526 189 DSLKWNPLSQ 198 (284)
Q Consensus 189 ~~lv~dEAd~ 198 (284)
.+++.||.-.
T Consensus 151 r~VIVDEiHe 160 (814)
T COG1201 151 RYVIVDEIHA 160 (814)
T ss_pred cEEEeehhhh
Confidence 8888888444
No 48
>PRK14701 reverse gyrase; Provisional
Probab=99.75 E-value=6e-18 Score=182.97 Aligned_cols=142 Identities=17% Similarity=0.007 Sum_probs=107.0
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q 042526 44 LLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG 122 (284)
Q Consensus 44 ~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (284)
++.+.+++ +|| .||++|+.+||.+ +.|+|++++||||||||++|+++++... . .
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~i-l~G~d~li~APTGsGKTl~~~~~al~~~-~----------------------~ 121 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRI-LRGKSFSIVAPTGMGKSTFGAFIALFLA-L----------------------K 121 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHH-HcCCCEEEEEcCCCCHHHHHHHHHHHHH-h----------------------c
Confidence 44455665 899 5999999999999 9999999999999999996665554321 1 2
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCC--ceeEEEeCCCcchHH----HHHhcC-CCcccccccCC--cc-----ccc
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNS--LTLAMAAGSPLLTSE----HSNRRK-PNKRKRTRKGG--ED-----EKL 188 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~q~----~~l~~~-~~i~v~~~~~~--~~-----d~l 188 (284)
+.++|||+|||+||.|++..++.++..++ +.+++++|+....+. ..+..+ ++|++.+.-.. .+ .++
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i 201 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKF 201 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCC
Confidence 56899999999999999999999988764 566677777544332 234444 78877663211 11 357
Q ss_pred cccCCCCCCcccc-----------cccccchhh
Q 042526 189 DSLKWNPLSQPKT-----------TTLLPSSLA 210 (284)
Q Consensus 189 ~~lv~dEAd~m~~-----------~gflp~~~~ 210 (284)
..+++||||.|+. +||.++.+.
T Consensus 202 ~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 202 DFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred CEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 7899999999986 799999874
No 49
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.73 E-value=6.5e-18 Score=141.02 Aligned_cols=135 Identities=25% Similarity=0.264 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 58 TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 58 T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
||+|.++|+.+ .+|+++++.||||||||++|++|+++.+... ...++||++||++|+.
T Consensus 1 t~~Q~~~~~~i-~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~~ 58 (169)
T PF00270_consen 1 TPLQQEAIEAI-ISGKNVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALAE 58 (169)
T ss_dssp -HHHHHHHHHH-HTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHHH
T ss_pred CHHHHHHHHHH-HcCCCEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeecccccc
Confidence 79999999999 7999999999999999999999999877663 1348999999999999
Q ss_pred HHHHHHhhhhcCCCceeEEEeCCCcch--HHHHHhcCCCcccccc----------cCCccccccccCCCCCCcccccccc
Q 042526 138 QVLMVASPSLKSNSLTLAMAAGSPLLT--SEHSNRRKPNKRKRTR----------KGGEDEKLDSLKWNPLSQPKTTTLL 205 (284)
Q Consensus 138 Qi~~~~~~l~~~~~i~v~~~~G~~~~~--q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~dEAd~m~~~gfl 205 (284)
|+...+..+....++.+..++|+.... +...+..++++++.+. .. .+.++..+++||++.+.+.+|.
T Consensus 59 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~ 137 (169)
T PF00270_consen 59 QQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFR 137 (169)
T ss_dssp HHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHH
Confidence 999999999988888888888876533 3344545688866551 12 3455889999999998887666
Q ss_pred cchhhhcccC
Q 042526 206 PSSLALMNLT 215 (284)
Q Consensus 206 p~~~~~~~~~ 215 (284)
.....++...
T Consensus 138 ~~~~~i~~~~ 147 (169)
T PF00270_consen 138 AMLKSILRRL 147 (169)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 6555555543
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.72 E-value=4.8e-17 Score=168.78 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 40 RLHPLLMKSIYK-LGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 40 ~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+..++..+.+ ++|+ |||+|..||+.+ ..+ +|++++|+||||||++|++|++..+..
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I-~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------- 499 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEI-KADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------- 499 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------------
Confidence 345666666655 7995 999999999999 554 799999999999999999999876532
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH----HHHHhc-CCCcccccc----cCC
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS----EHSNRR-KPNKRKRTR----KGG 183 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q----~~~l~~-~~~i~v~~~----~~~ 183 (284)
+.+++||+||++||.|++..++.+....++++.++.|+....+ ...+.. .+++++.|. ...
T Consensus 500 ----------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v 569 (926)
T TIGR00580 500 ----------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDV 569 (926)
T ss_pred ----------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCC
Confidence 4689999999999999999999988888899888887644322 223334 478877663 223
Q ss_pred ccccccccCCCCCCcc
Q 042526 184 EDEKLDSLKWNPLSQP 199 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m 199 (284)
.+.+|..+|+||++++
T Consensus 570 ~f~~L~llVIDEahrf 585 (926)
T TIGR00580 570 KFKDLGLLIIDEEQRF 585 (926)
T ss_pred CcccCCEEEeeccccc
Confidence 5778999999999983
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=3.6e-17 Score=166.04 Aligned_cols=131 Identities=20% Similarity=0.134 Sum_probs=105.0
Q ss_pred HHHHHHH-HHcCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042526 43 PLLMKSI-YKLGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEA 115 (284)
Q Consensus 43 ~~Ll~~L-~~~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~ 115 (284)
..+++.+ ..++|+ ||++|..||+.| ..+ ++++++|+||||||++|++|++..+.
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I-~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------------- 308 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEI-LADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------------- 308 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHH-HHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------------
Confidence 4455544 557885 999999999999 665 48999999999999999999987652
Q ss_pred hhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH----HHHHhcC-CCccccccc----CCccc
Q 042526 116 EKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS----EHSNRRK-PNKRKRTRK----GGEDE 186 (284)
Q Consensus 116 ~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q----~~~l~~~-~~i~v~~~~----~~~~d 186 (284)
.+.+++||+||++||.|++..++.+...+++++++++|+....+ ...+..+ +++++.|.- ...+.
T Consensus 309 ------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~ 382 (681)
T PRK10917 309 ------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFH 382 (681)
T ss_pred ------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhc
Confidence 26789999999999999999999999989999999999865432 3344443 777776521 12477
Q ss_pred cccccCCCCCCc
Q 042526 187 KLDSLKWNPLSQ 198 (284)
Q Consensus 187 ~l~~lv~dEAd~ 198 (284)
++..+|+||+++
T Consensus 383 ~l~lvVIDE~Hr 394 (681)
T PRK10917 383 NLGLVIIDEQHR 394 (681)
T ss_pred ccceEEEechhh
Confidence 899999999997
No 52
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3e-17 Score=159.99 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=95.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.+||+.|+|+|.+|||.+ +.|+|+++++|||||||++|++|++.. ...+|||+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~-l~g~dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi~ 58 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAV-LLGRDCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVIS 58 (470)
T ss_pred hcCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEEe
Confidence 379999999999999999 899999999999999999999998741 23589999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----Hhc-CCCccccccc-----------CCccccccccCCC
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRR-KPNKRKRTRK-----------GGEDEKLDSLKWN 194 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~-~~~i~v~~~~-----------~~~~d~l~~lv~d 194 (284)
|||+|+.|+...+..+ ++.++.+.|+....+... +.. .+++++.+.- +....++..+|+|
T Consensus 59 P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViD 134 (470)
T TIGR00614 59 PLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVD 134 (470)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEe
Confidence 9999999988887653 677777777765543222 222 2455443310 0134677889999
Q ss_pred CCCcccccc--cccch
Q 042526 195 PLSQPKTTT--LLPSS 208 (284)
Q Consensus 195 EAd~m~~~g--flp~~ 208 (284)
||+.+.+.| |-++.
T Consensus 135 EaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 135 EAHCISQWGHDFRPDY 150 (470)
T ss_pred CCcccCccccccHHHH
Confidence 999998877 55543
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.69 E-value=9.8e-17 Score=161.59 Aligned_cols=131 Identities=20% Similarity=0.120 Sum_probs=103.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042526 43 PLLMKSIYKLGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAE 116 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~ 116 (284)
..+...+..++| .||++|..||+.| +.+ .+.+++|+||||||++|++|++..+..
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I-~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----------------- 283 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEI-LQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----------------- 283 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHH-HHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------------
Confidence 334556678999 5999999999999 554 368999999999999999999876532
Q ss_pred hcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH----HHHHhc-CCCcccccccC----Ccccc
Q 042526 117 KYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS----EHSNRR-KPNKRKRTRKG----GEDEK 187 (284)
Q Consensus 117 ~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q----~~~l~~-~~~i~v~~~~~----~~~d~ 187 (284)
+.+++||+||++||.|++..++.+...+++++++++|+..... ...+.. .+++++.+... ..+.+
T Consensus 284 ------g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~ 357 (630)
T TIGR00643 284 ------GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKR 357 (630)
T ss_pred ------CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccc
Confidence 5689999999999999999999999988999999988854433 223333 36776655221 34678
Q ss_pred ccccCCCCCCc
Q 042526 188 LDSLKWNPLSQ 198 (284)
Q Consensus 188 l~~lv~dEAd~ 198 (284)
+..+|+||+++
T Consensus 358 l~lvVIDEaH~ 368 (630)
T TIGR00643 358 LALVIIDEQHR 368 (630)
T ss_pred cceEEEechhh
Confidence 99999999997
No 54
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.68 E-value=8.4e-17 Score=165.92 Aligned_cols=136 Identities=22% Similarity=0.214 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
....+..+|.+.|+..++++|.+|+..+ .+|+||||+++||||||.||++||++.+++..
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~-~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------------------- 114 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLI-REGRNVVVTTGTGSGKTESFLLPILDHLLRDP------------------- 114 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHH-HCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------------------
Confidence 4556788899999999999999999999 99999999999999999999999999998863
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhhhhcCCC--ceeEEEeCCCcchHH-HHHhcCCCcccccccC-------------Cc
Q 042526 121 KGHLRALIINPTRELALQVLMVASPSLKSNS--LTLAMAAGSPLLTSE-HSNRRKPNKRKRTRKG-------------GE 184 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~q~-~~l~~~~~i~v~~~~~-------------~~ 184 (284)
.-+||+|.||++||+...+.++++...++ +.+..+.|....... ...+..|+|+++...+ ..
T Consensus 115 --~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 115 --SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred --CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 22899999999999999999999998887 777888888766666 4455567776654222 24
Q ss_pred cccccccCCCCCCc
Q 042526 185 DEKLDSLKWNPLSQ 198 (284)
Q Consensus 185 ~d~l~~lv~dEAd~ 198 (284)
+.+|.++|+||+=-
T Consensus 193 ~~~Lk~lVvDElHt 206 (851)
T COG1205 193 LRNLKYLVVDELHT 206 (851)
T ss_pred HhcCcEEEEeccee
Confidence 66799999999544
No 55
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.68 E-value=2.3e-16 Score=163.59 Aligned_cols=144 Identities=17% Similarity=0.094 Sum_probs=103.0
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 35 AWNE--LRLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 35 ~F~~--l~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
.|.. ++....|...+.. +||..++|+|.++|+++ +.|+|+++++|||+|||+||+||+|..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~ai-L~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINAT-MSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 4775 4455667666665 89999999999999999 999999999999999999999999841
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHh------cCCCcccccccC--
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNR------RKPNKRKRTRKG-- 182 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~------~~~~i~v~~~~~-- 182 (284)
...+|||+|+++|+.+....+.. .++.++.+.|+. ...|...++ ..+++++.+.-.
T Consensus 500 -----------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~ 564 (1195)
T PLN03137 500 -----------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVA 564 (1195)
T ss_pred -----------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhh
Confidence 23599999999999843333322 477777777664 444444333 235554444210
Q ss_pred --C----------ccccccccCCCCCCcccccc--cccchh
Q 042526 183 --G----------EDEKLDSLKWNPLSQPKTTT--LLPSSL 209 (284)
Q Consensus 183 --~----------~~d~l~~lv~dEAd~m~~~g--flp~~~ 209 (284)
+ ...+|..+|+|||+.+.+.| |-|+..
T Consensus 565 ~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 565 KSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred cchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 0 12346778999999999988 666553
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.65 E-value=5.7e-16 Score=163.93 Aligned_cols=132 Identities=17% Similarity=0.021 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042526 43 PLLMKSIYKLGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAE 116 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~ 116 (284)
....+....++| .||++|..|||.+ +.+ +|++++|+||||||.+|+.+++..+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~i-l~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------------ 647 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAV-LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------------ 647 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHH-HHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------------
Confidence 344455677899 5999999999999 666 89999999999999999988765431
Q ss_pred hcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHh----cCCCcccccccC----Ccccc
Q 042526 117 KYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNR----RKPNKRKRTRKG----GEDEK 187 (284)
Q Consensus 117 ~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~----~~~~i~v~~~~~----~~~d~ 187 (284)
.+.+++||+||++||.|++..++......++++.++.|+ +...+...+. ..++|++.|..+ ..+.+
T Consensus 648 -----~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~ 722 (1147)
T PRK10689 648 -----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKD 722 (1147)
T ss_pred -----cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhh
Confidence 267899999999999999999998777778888777665 4434433332 357887777422 23578
Q ss_pred ccccCCCCCCcc
Q 042526 188 LDSLKWNPLSQP 199 (284)
Q Consensus 188 l~~lv~dEAd~m 199 (284)
|..+|+||++++
T Consensus 723 L~lLVIDEahrf 734 (1147)
T PRK10689 723 LGLLIVDEEHRF 734 (1147)
T ss_pred CCEEEEechhhc
Confidence 899999999996
No 57
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.63 E-value=9.4e-16 Score=153.91 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 042526 40 RLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKY 118 (284)
Q Consensus 40 ~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~ 118 (284)
.++......|++ +||..|+|+|.++|+.+ +.|+|+++.+|||||||++|++|++..
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~i-l~g~dvlv~apTGsGKTl~y~lpal~~---------------------- 64 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAV-LSGRDCLVVMPTGGGKSLCYQIPALVL---------------------- 64 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCchHHHHHHHHHHHc----------------------
Confidence 344444555555 79999999999999999 899999999999999999999999742
Q ss_pred CCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----Hhc-CCCccccccc---------CCc
Q 042526 119 APKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRR-KPNKRKRTRK---------GGE 184 (284)
Q Consensus 119 ~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~-~~~i~v~~~~---------~~~ 184 (284)
...+|||+||++|+.|+...+..+ ++.+.++.++........ +.. ..++++.+.- ...
T Consensus 65 ----~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~ 136 (607)
T PRK11057 65 ----DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLA 136 (607)
T ss_pred ----CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHh
Confidence 125899999999999998888754 666766666654443222 222 2333332211 011
Q ss_pred cccccccCCCCCCcccccc--cccch
Q 042526 185 DEKLDSLKWNPLSQPKTTT--LLPSS 208 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~g--flp~~ 208 (284)
..++..+|+|||+.+.+.| |-|+.
T Consensus 137 ~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 137 HWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred hCCCCEEEEeCccccccccCcccHHH
Confidence 2357789999999998877 65554
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.62 E-value=2.9e-16 Score=147.15 Aligned_cols=68 Identities=37% Similarity=0.436 Sum_probs=64.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
|..|+++|+-|+|-.+..++.|+-||.+|+++||.| +.|-||+..|.||||||-||+||+|+.+.+..
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaipli-lgggdvlmaaetgsgktgaf~lpilqiv~etl 68 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLI-LGGGDVLMAAETGSGKTGAFCLPILQIVWETL 68 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEE-ecCCcEEEEeccCCCCccceehhhHHHHHHHH
Confidence 467999999999999999999999999999999999 99999999999999999999999999987653
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.8e-15 Score=151.05 Aligned_cols=102 Identities=22% Similarity=0.153 Sum_probs=89.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. .|||||..++|.+ +.|+ |+.++||+|||++|++|++.... .+++++||+|
T Consensus 100 lg~-~p~~VQ~~~~~~l-l~G~--Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvTp 152 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLAL-LSGR--LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVITV 152 (656)
T ss_pred hCC-CCChHHHHHHHHH-hCCC--eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEcC
Confidence 566 5999999999999 8998 99999999999999999997543 2678999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRK 181 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~ 181 (284)
|++||.|++..+..|...++++|++++|+.. .+...+..+++|++.+..
T Consensus 153 treLA~qdae~~~~l~~~lGlsv~~i~gg~~-~~~r~~~y~~dIvygT~~ 201 (656)
T PRK12898 153 NDYLAERDAELMRPLYEALGLTVGCVVEDQS-PDERRAAYGADITYCTNK 201 (656)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEeCCCC-HHHHHHHcCCCEEEECCC
Confidence 9999999999999999999999999998864 466777788899777643
No 60
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2.8e-15 Score=152.52 Aligned_cols=130 Identities=17% Similarity=0.084 Sum_probs=103.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|+ +|+++|..+++.+ +.|+ |+.++||+|||++|++|++...+. +.+++|++|
T Consensus 75 ~g~-~p~~vQl~~~~~l-~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------------------G~~v~VvTp 127 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL-HEGN--IAEMQTGEGKTLTATMPLYLNALE-----------------------GKGVHLITV 127 (790)
T ss_pred hCC-CCchHHHHhHHHH-cCCc--eeeecCCCcchHHHHHHHHHHHHc-----------------------CCCeEEEeC
Confidence 677 7999999999988 8887 999999999999999999854433 568999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccCC----------------ccccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGG----------------EDEKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~~----------------~~d~l~~lv~dE 195 (284)
|++||.|.+..+..+...+|++|++++|+....+.......++|++.+..-. -+..+.++++||
T Consensus 128 t~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDE 207 (790)
T PRK09200 128 NDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDE 207 (790)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEec
Confidence 9999999999999999999999999999876344445556788877652111 224567799999
Q ss_pred CCccc-ccccccch
Q 042526 196 LSQPK-TTTLLPSS 208 (284)
Q Consensus 196 Ad~m~-~~gflp~~ 208 (284)
||.|+ |-.--|-+
T Consensus 208 aDsiLiDea~tpli 221 (790)
T PRK09200 208 IDSILLDEAQTPLI 221 (790)
T ss_pred cccceeccCCCcee
Confidence 99954 33354533
No 61
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.59 E-value=4.2e-15 Score=148.77 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=96.1
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeE
Q 042526 47 KSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR 125 (284)
Q Consensus 47 ~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (284)
+.|++ +||..|+|+|.++|+.+ +.|+|+++++|||+|||++|++|++.. .-.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~i-l~g~dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~ 55 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHV-LDGRDVLVVMPTGGGKSLCYQVPALLL--------------------------KGL 55 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCccHhHHHHHHHHHc--------------------------CCc
Confidence 34554 89999999999999999 899999999999999999999998731 124
Q ss_pred EEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----Hhc-CCCccccccc---------CCcccccccc
Q 042526 126 ALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRR-KPNKRKRTRK---------GGEDEKLDSL 191 (284)
Q Consensus 126 aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~-~~~i~v~~~~---------~~~~d~l~~l 191 (284)
+|||+|+++|+.|....++.+ ++.+..+.|+....+... +.. ..++++.+.- .....++..+
T Consensus 56 ~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 56 TVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred EEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 899999999999998888764 667777777654443222 222 3444433211 1123467889
Q ss_pred CCCCCCcccccc--cccch
Q 042526 192 KWNPLSQPKTTT--LLPSS 208 (284)
Q Consensus 192 v~dEAd~m~~~g--flp~~ 208 (284)
|+|||+.+.+.| |-|..
T Consensus 132 ViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 132 AVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred EEeCCcccccccCccHHHH
Confidence 999999988866 55544
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.57 E-value=8.6e-15 Score=147.62 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCCchHH---------hHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 59 SILKARIPALAHQRKDVIGAAETESGKTRA---------FGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 59 ~iQ~~aip~il~~G~dviv~A~TGSGKTla---------fllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
.+|.+++|.+ +.|+|+|++|+||||||.+ |++|.+..+.... ......+++|+
T Consensus 167 ~iQ~qil~~i-~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----------------~~~~~~~ilvt 228 (675)
T PHA02653 167 DVQLKIFEAW-ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----------------PNFIERPIVLS 228 (675)
T ss_pred HHHHHHHHHH-HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----------------cccCCcEEEEE
Confidence 4899999999 9999999999999999987 6667766554311 11235689999
Q ss_pred ecCHHHHHHHHHHHhhhhcC---CCceeEEEeCCCcchHHHHHhcCCCcccccc--cCCccccccccCCCCCCccccccc
Q 042526 130 NPTRELALQVLMVASPSLKS---NSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--KGGEDEKLDSLKWNPLSQPKTTTL 204 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~~---~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--~~~~~d~l~~lv~dEAd~m~~~gf 204 (284)
+||||||.|+...+.....+ .+..+.+.+|+....+.....+..++++++. ....+.++..+|+||||++..++.
T Consensus 229 ~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~D 308 (675)
T PHA02653 229 LPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGD 308 (675)
T ss_pred CcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchh
Confidence 99999999999998876655 3566777777765444344444667766653 234688999999999999988884
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.55 E-value=1.8e-14 Score=145.11 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=97.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|+ +|+++|..+++.+ +.|+ |+.++||+|||++|++|++...+. +.+++|++|
T Consensus 53 lg~-~p~~vQlig~~~l-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvTp 105 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL-HKGK--IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVTV 105 (745)
T ss_pred hCC-CccchHHhhhhhh-cCCc--eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEcC
Confidence 676 5999999999987 7776 999999999999999999644332 335999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccC----------------CccccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKG----------------GEDEKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~----------------~~~d~l~~lv~dE 195 (284)
|++||.|.+..+..|...+|++|++++|+.... .+.....++|++.+..- ..+..+..+++||
T Consensus 106 t~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~-~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDE 184 (745)
T TIGR00963 106 NDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPE-ERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDE 184 (745)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHH-HHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeec
Confidence 999999999999999999999999998875543 34444567887766431 1345678899999
Q ss_pred CCcccc
Q 042526 196 LSQPKT 201 (284)
Q Consensus 196 Ad~m~~ 201 (284)
+|.|+-
T Consensus 185 aDs~LI 190 (745)
T TIGR00963 185 VDSILI 190 (745)
T ss_pred HHHHhH
Confidence 998665
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.53 E-value=3.2e-14 Score=143.90 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=100.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|..+++.+ ..| .|++++||+|||++|++|++...+. +..++||+|
T Consensus 67 lgl-rpydVQlig~l~l-~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------------------g~~V~VVTp 119 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-HQG--NIAEMKTGEGKTLTATMPLYLNALT-----------------------GKGAMLVTT 119 (762)
T ss_pred cCC-CccHHHHHHHHHh-cCC--ceeEecCCcchHHHHHHHHHHHhhc-----------------------CCceEEeCC
Confidence 677 7888888888876 666 6999999999999999998654432 346999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCC----CcchHHHHHhcCCCcccccccCC----------------cccccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGS----PLLTSEHSNRRKPNKRKRTRKGG----------------EDEKLDSL 191 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~----~~~~q~~~l~~~~~i~v~~~~~~----------------~~d~l~~l 191 (284)
|++||.|.+..+..|...+|++|.+++++ ....+......+++|++.+..-. .+..+.++
T Consensus 120 n~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~ 199 (762)
T TIGR03714 120 NDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYV 199 (762)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEE
Confidence 99999999999999999999999887665 23344455557788877663221 13457789
Q ss_pred CCCCCCcc-cccccccchh
Q 042526 192 KWNPLSQP-KTTTLLPSSL 209 (284)
Q Consensus 192 v~dEAd~m-~~~gflp~~~ 209 (284)
|.||||.| .|-.--|.++
T Consensus 200 IVDEaDsILiDeartplii 218 (762)
T TIGR03714 200 IVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred EEecHhhHhhccCcCCeee
Confidence 99999997 4554666554
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.52 E-value=3.9e-14 Score=144.66 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 042526 40 RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119 (284)
Q Consensus 40 ~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (284)
.+++.+...+...|+....+-|+.++...+..|.|++++||||||||+..++.+++.+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 4888999999999998888888888887767789999999999999999999999988773
Q ss_pred CCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccCCccccccccCCCCCCcc
Q 042526 120 PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 120 ~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~~~~d~l~~lv~dEAd~m 199 (284)
+-++|+|||+|.||.+++..+.+| ..+|++|...+|+..... ....+.+++|. +.+++.++..+..+++
T Consensus 76 ---~~k~vYivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~--~~l~~~~ViVt-----T~EK~Dsl~R~~~~~~ 144 (766)
T COG1204 76 ---GGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDD--ERLARYDVIVT-----TPEKLDSLTRKRPSWI 144 (766)
T ss_pred ---CCcEEEEeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccch--hhhccCCEEEE-----chHHhhHhhhcCcchh
Confidence 346999999999999999999955 447999999999876543 34456677777 5667777777777777
Q ss_pred cccc-cccchhhhcccCCCCCCCc
Q 042526 200 KTTT-LLPSSLALMNLTEGKPGKK 222 (284)
Q Consensus 200 ~~~g-flp~~~~~~~~~~r~~~~~ 222 (284)
.+.+ ++.+.+|++.+..|++--+
T Consensus 145 ~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 145 EEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred hcccEEEEeeeeecCCcccCceeh
Confidence 7777 7888899988877887543
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.42 E-value=7.1e-13 Score=130.39 Aligned_cols=122 Identities=13% Similarity=-0.053 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
...|+++|..|++.+ +.+++.+++||||||||++++. ++..+... ...++||||||+
T Consensus 112 ~~~~r~~Q~~av~~~-l~~~~~il~apTGsGKT~i~~~-l~~~~~~~---------------------~~~~vLilvpt~ 168 (501)
T PHA02558 112 KIEPHWYQYDAVYEG-LKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN---------------------YEGKVLIIVPTT 168 (501)
T ss_pred cCCCCHHHHHHHHHH-HhcCceEEEeCCCCCHHHHHHH-HHHHHHhc---------------------CCCeEEEEECcH
Confidence 357999999999998 7888999999999999987643 22222221 234799999999
Q ss_pred HHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc------ccCCccccccccCCCCCCccccccc
Q 042526 134 ELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT------RKGGEDEKLDSLKWNPLSQPKTTTL 204 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~------~~~~~~d~l~~lv~dEAd~m~~~gf 204 (284)
+|+.|+...+..+.......+..++|+.... ..+++++.+ .....++.+..+++|||+++..-.|
T Consensus 169 eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~------~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~ 239 (501)
T PHA02558 169 SLVTQMIDDFVDYRLFPREAMHKIYSGTAKD------TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSL 239 (501)
T ss_pred HHHHHHHHHHHHhccccccceeEEecCcccC------CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhH
Confidence 9999999999988754444454444443221 234554443 1112367888999999999875443
No 67
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=6.9e-13 Score=135.57 Aligned_cols=130 Identities=17% Similarity=0.082 Sum_probs=95.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|...--.+ ..|+ |+.++||+|||++|++|++..++. +..++||+|
T Consensus 79 lg~-~~ydvQliGg~~L-h~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvTp 131 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL-HEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVTV 131 (896)
T ss_pred cCC-CcchHHHhhhhhh-ccCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEcC
Confidence 455 5888888766554 5554 889999999999999999976543 235899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccCC-----------cc-----ccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGG-----------ED-----EKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~~-----------~~-----d~l~~lv~dE 195 (284)
|++||.|++.++..|...+|++|++++|+..... +.....++|++.|..-. .+ ..+.++++||
T Consensus 132 n~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~-r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDE 210 (896)
T PRK13104 132 NDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKE-KQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDE 210 (896)
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHH-HHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEecc
Confidence 9999999999999999999999999888754433 23334678866653211 12 3577889999
Q ss_pred CCccc-ccccccchh
Q 042526 196 LSQPK-TTTLLPSSL 209 (284)
Q Consensus 196 Ad~m~-~~gflp~~~ 209 (284)
||.|+ |-.--|.++
T Consensus 211 aDsiLIDeArtPLII 225 (896)
T PRK13104 211 VDSILIDEARTPLII 225 (896)
T ss_pred HhhhhhhccCCceee
Confidence 99954 333444444
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=126.35 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=118.9
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
....+|.+|+.+.+-|...||+.++|+|..|+..-++.|.|+++.++|+|||||.--++=|.+++..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~------------- 260 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG------------- 260 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------------
Confidence 4578899999999999999999999999999999989999999999999999999988888877663
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH-----HHhcCCCcccccccCCccccc
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH-----SNRRKPNKRKRTRKGGEDEKL 188 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~-----~l~~~~~i~v~~~~~~~~d~l 188 (284)
+-..|+|+|..+||+|-|..|+.-...+++++++-+|........ .--...||++.+ .+-+
T Consensus 261 ---------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGT-----YEGi 326 (830)
T COG1202 261 ---------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGT-----YEGI 326 (830)
T ss_pred ---------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEee-----chhH
Confidence 457899999999999999999987788899998888864332211 111223455542 3333
Q ss_pred cccCCCCCCcccccc-cccchhhhcccCCCCCC
Q 042526 189 DSLKWNPLSQPKTTT-LLPSSLALMNLTEGKPG 220 (284)
Q Consensus 189 ~~lv~dEAd~m~~~g-flp~~~~~~~~~~r~~~ 220 (284)
.++..-. ..+-|+| .+.+.+|.+++.+|++.
T Consensus 327 D~lLRtg-~~lgdiGtVVIDEiHtL~deERG~R 358 (830)
T COG1202 327 DYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPR 358 (830)
T ss_pred HHHHHcC-CcccccceEEeeeeeeccchhcccc
Confidence 3333333 3344444 45555666666666653
No 69
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.36 E-value=6.6e-12 Score=127.60 Aligned_cols=116 Identities=15% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHHcC---CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPALAHQ---RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~---G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.+|+.|.+|+..+ .. +++++++|+||||||.+|+.++...+.. +.++|||+||
T Consensus 144 ~Lt~~Q~~ai~~i-~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------------g~~vLvLvPt 199 (679)
T PRK05580 144 TLNPEQAAAVEAI-RAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------------GKQALVLVPE 199 (679)
T ss_pred CCCHHHHHHHHHH-HhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------------------CCeEEEEeCc
Confidence 4899999999999 55 4899999999999999999877654422 4579999999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH-HHH---Hh-cCCCccccccc--CCccccccccCCCCCCc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTS-EHS---NR-RKPNKRKRTRK--GGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q-~~~---l~-~~~~i~v~~~~--~~~~d~l~~lv~dEAd~ 198 (284)
++|+.|++..++.. ++..++++.|+....+ ... +. ..+++++.++. ..-+.++..+|+||++.
T Consensus 200 ~~L~~Q~~~~l~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 200 IALTPQMLARFRAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHD 269 (679)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCc
Confidence 99999999988764 3567878877744332 222 22 34677776642 23467888899999875
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.34 E-value=1.2e-12 Score=140.59 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=84.7
Q ss_pred EEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhc--------
Q 042526 77 GAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK-------- 148 (284)
Q Consensus 77 v~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~-------- 148 (284)
++||||||||+||+||+|+++...... .........++++|||+|||+|+.|+++.++....
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~----------~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGE----------DTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccc----------cccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 479999999999999999998864200 00001112468999999999999999999875221
Q ss_pred ----CCCceeEEEeCCCcchHHHHH-hcCCCcccccc---------c-CCccccccccCCCCCCccccc
Q 042526 149 ----SNSLTLAMAAGSPLLTSEHSN-RRKPNKRKRTR---------K-GGEDEKLDSLKWNPLSQPKTT 202 (284)
Q Consensus 149 ----~~~i~v~~~~G~~~~~q~~~l-~~~~~i~v~~~---------~-~~~~d~l~~lv~dEAd~m~~~ 202 (284)
..+++|.+++|+....+...+ ++.|+|++.|. . ...+..|..+|+||++.|.+.
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 247889899988766665544 55788877661 1 124778999999999998865
No 71
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.34 E-value=4.6e-12 Score=106.34 Aligned_cols=143 Identities=27% Similarity=0.175 Sum_probs=103.0
Q ss_pred HcCCCCCcHHHHHHHHHHHcCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 51 KLGFKESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
..++..|++.|..+++.+ ..+ +.+++.++||||||.+++.+++..+... ....+||+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~-~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~ 60 (201)
T smart00487 3 KFGFEPLRPYQKEAIEAL-LSGLRDVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVL 60 (201)
T ss_pred ccCCCCCCHHHHHHHHHH-HcCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEE
Confidence 457889999999999998 777 9999999999999999999998876543 13469999
Q ss_pred ecCHHHHHHHHHHHhhhhcCCC-ceeEEEeCCCcchHHHHHhcCC-Ccccccc---------cCCccccccccCCCCCCc
Q 042526 130 NPTRELALQVLMVASPSLKSNS-LTLAMAAGSPLLTSEHSNRRKP-NKRKRTR---------KGGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~~~~-i~v~~~~G~~~~~q~~~l~~~~-~i~v~~~---------~~~~~d~l~~lv~dEAd~ 198 (284)
+||+.++.|+...+..+..... .....+.|.........+..+. ++++.+. ......++..+++||++.
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 140 (201)
T smart00487 61 VPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHR 140 (201)
T ss_pred eCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHH
Confidence 9999999999999998877655 3344444544455555555554 5544330 112345677899999999
Q ss_pred ccccccccchhhhcccC
Q 042526 199 PKTTTLLPSSLALMNLT 215 (284)
Q Consensus 199 m~~~gflp~~~~~~~~~ 215 (284)
+..-.+......++...
T Consensus 141 ~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 141 LLDGGFGDQLEKLLKLL 157 (201)
T ss_pred HhcCCcHHHHHHHHHhC
Confidence 87644555554444433
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.23 E-value=6.3e-11 Score=122.15 Aligned_cols=123 Identities=16% Similarity=0.053 Sum_probs=95.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.-.|.++|..++..+ +.+ |+++++|||+|||++|++++...+.. .+.++|||+||+
T Consensus 13 ~~~~r~yQ~~~~~~~-l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------------------~~~~vLvl~Pt~ 68 (773)
T PRK13766 13 TIEARLYQQLLAATA-LKK-NTLVVLPTGLGKTAIALLVIAERLHK----------------------KGGKVLILAPTK 68 (773)
T ss_pred cCCccHHHHHHHHHH-hcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------------------CCCeEEEEeCcH
Confidence 346899999998887 666 99999999999999999999887621 245799999999
Q ss_pred HHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCccccccccCCCCCCccc
Q 042526 134 ELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGEDEKLDSLKWNPLSQPK 200 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~d~l~~lv~dEAd~m~ 200 (284)
+|+.|+...++.+....+..+..+.|+....+...+....++++.+. ....++.+..+|||||.++.
T Consensus 69 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 69 PLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc
Confidence 99999999999886654557778888876666556666667765542 12245678889999999864
No 73
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=6.7e-11 Score=120.86 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=92.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|....=.+ +.|+ |+.++||+|||++|++|++-..+. +..+-|++|
T Consensus 78 lg~-~~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~IvTp 130 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHVVTV 130 (830)
T ss_pred hCC-CCCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------------------CCCEEEEec
Confidence 566 5999998887665 7775 899999999999999999643322 223569999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccCC----------------ccccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGG----------------EDEKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~~----------------~~d~l~~lv~dE 195 (284)
|+.||.|.+..+..+...+|++|++++|+....+.... ..++|++.+..-. -...+.++++||
T Consensus 131 n~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~-y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDE 209 (830)
T PRK12904 131 NDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREA-YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDE 209 (830)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHh-cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEec
Confidence 99999999999999999999999999887544443333 3577766552211 123455688899
Q ss_pred CCcccc-cccccc
Q 042526 196 LSQPKT-TTLLPS 207 (284)
Q Consensus 196 Ad~m~~-~gflp~ 207 (284)
||.|+- -.--|-
T Consensus 210 aDsiLIDeArtpL 222 (830)
T PRK12904 210 VDSILIDEARTPL 222 (830)
T ss_pred hhhheeccCCCce
Confidence 998543 334443
No 74
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.18 E-value=9.8e-11 Score=121.96 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEK 117 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~ 117 (284)
+++.+...+...||+ +.|.|.+.+..+ +..|+++++.||||||||+||++|++..+. .
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------------- 291 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------------- 291 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----------------
Confidence 445778888889998 789999866633 377999999999999999999999987543 1
Q ss_pred cCCCCCeEEEEEecCHHHHHHHHH-HHhhhhcCCC--ceeEEEeCCC
Q 042526 118 YAPKGHLRALIINPTRELALQVLM-VASPSLKSNS--LTLAMAAGSP 161 (284)
Q Consensus 118 ~~~~~~~~aLIL~PTReLa~Qi~~-~~~~l~~~~~--i~v~~~~G~~ 161 (284)
+-++||.+||++|..|+.. .+..+.+.++ ++++++.|..
T Consensus 292 -----~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 292 -----EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred -----CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 2369999999999999865 6777777655 7777777763
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.18 E-value=5e-11 Score=112.61 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCCc--EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 60 ILKARIPALAHQRKD--VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 60 iQ~~aip~il~~G~d--viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
+|.++++.+ ..+.+ ++++||||||||++|++|++.. ...+++++||++|+.
T Consensus 1 hQ~~~~~~~-~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~ 53 (357)
T TIGR03158 1 HQVATFEAL-QSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIE 53 (357)
T ss_pred CHHHHHHHH-HcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHH
Confidence 499999999 77764 7889999999999999998831 235899999999999
Q ss_pred HHHHHHhhhhcCC----CceeEEEeCC
Q 042526 138 QVLMVASPSLKSN----SLTLAMAAGS 160 (284)
Q Consensus 138 Qi~~~~~~l~~~~----~i~v~~~~G~ 160 (284)
|+++.++.+...+ ++.+..+.|.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 54 DQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 9999999887433 4556666665
No 76
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.15 E-value=8.9e-11 Score=121.22 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=75.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHh-hhhc
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS-PSLK 148 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~-~l~~ 148 (284)
.++++++++|+||||||++|.+|+++... ...++||++|||++|.|++..+. .+..
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------------------INGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------------------cCCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 67899999999999999999999986421 12479999999999999999875 4555
Q ss_pred CCCceeEEEeCCCcchHHHHHhcCCCccccc--------ccCCccccccccCCCCCCc-ccccc
Q 042526 149 SNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT--------RKGGEDEKLDSLKWNPLSQ-PKTTT 203 (284)
Q Consensus 149 ~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~--------~~~~~~d~l~~lv~dEAd~-m~~~g 203 (284)
..+..|...+++.... .....|.+.| .....++.+.++||||++. +++..
T Consensus 75 ~~g~~VGy~vr~~~~~-----~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~D 133 (812)
T PRK11664 75 KPGETVGYRMRAESKV-----GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQAD 133 (812)
T ss_pred ccCceEEEEecCcccc-----CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccc
Confidence 5677777666553221 1122333322 1123678899999999997 55543
No 77
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.14 E-value=1.4e-10 Score=119.69 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=79.8
Q ss_pred HHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHh
Q 042526 65 IPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144 (284)
Q Consensus 65 ip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~ 144 (284)
+..+ ..+.++|++|+||||||.+|.+|+++... .+.++||+.|||++|.|++..+.
T Consensus 11 ~~~l-~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~rva 66 (819)
T TIGR01970 11 RDAL-AAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQRLA 66 (819)
T ss_pred HHHH-HcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 3444 77899999999999999999999987541 13579999999999999999875
Q ss_pred -hhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc--------ccCCccccccccCCCCCCc-ccccccccc
Q 042526 145 -PSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT--------RKGGEDEKLDSLKWNPLSQ-PKTTTLLPS 207 (284)
Q Consensus 145 -~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~--------~~~~~~d~l~~lv~dEAd~-m~~~gflp~ 207 (284)
.+....+..|...+++.. .....+.|.+.+ .....+..+..+||||++. +++.+|+-.
T Consensus 67 ~~~~~~~g~~VGy~vr~~~-----~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 67 SQLGEAVGQTVGYRVRGEN-----KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred HHhCCCcCcEEEEEEcccc-----ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHH
Confidence 444445666655444422 122334554433 1123577899999999994 777665433
No 78
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.11 E-value=2.9e-10 Score=117.74 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=70.6
Q ss_pred HHHcCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeE
Q 042526 49 IYKLGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR 125 (284)
Q Consensus 49 L~~~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (284)
+.-.||+ +.+-|....-.+ +..+..+++.|+||||||+||++|++... .+.+
T Consensus 239 ~~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~~ 293 (820)
T PRK07246 239 IALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------------DQRQ 293 (820)
T ss_pred hccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------------CCCc
Confidence 3334675 888998844433 46789999999999999999999988632 1457
Q ss_pred EEEEecCHHHHHHH-HHHHhhhhcCCCceeEEEeCCC
Q 042526 126 ALIINPTRELALQV-LMVASPSLKSNSLTLAMAAGSP 161 (284)
Q Consensus 126 aLIL~PTReLa~Qi-~~~~~~l~~~~~i~v~~~~G~~ 161 (284)
+||++|||+|+.|+ ...+..|.+.++++++++.|+.
T Consensus 294 vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 294 IIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 99999999999999 5888889988888887777664
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.11 E-value=2.2e-10 Score=117.18 Aligned_cols=104 Identities=22% Similarity=0.266 Sum_probs=87.0
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
-++|..+..+|+.++|.++.+.-|+|++||||||||..|+|.||..+.+.. .+.....+..+.++|+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-------------~~~~i~k~~fKiVYIa 171 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-------------EQGDIAKDDFKIVYIA 171 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-------------cccccccCCceEEEEe
Confidence 368899999999999999888999999999999999999999999887621 1133445678999999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH 167 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~ 167 (284)
|+++||..++.-+.+-...+|++|.-++|+.......
T Consensus 172 PmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te 208 (1230)
T KOG0952|consen 172 PMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE 208 (1230)
T ss_pred chHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH
Confidence 9999999999988877777899999999986544333
No 80
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.08 E-value=1.3e-10 Score=109.06 Aligned_cols=53 Identities=28% Similarity=0.170 Sum_probs=46.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
|+++.||||||||++|++|++..+... .+.+++|++|||+||.|+++.+..+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---------------------~~~~ii~v~P~~~L~~q~~~~l~~~f 53 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---------------------KADRVIIALPTRATINAMYRRAKELF 53 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---------------------CCCeEEEEeehHHHHHHHHHHHHHHh
Confidence 689999999999999999999765332 35689999999999999999999874
No 81
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=3.2e-10 Score=116.14 Aligned_cols=121 Identities=16% Similarity=0.038 Sum_probs=88.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. .|+++|...--.+ ..| -|+.++||+|||++|.+|++...+. +..+.||+|
T Consensus 79 lgm-~~ydVQliGgl~L-~~G--~IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT~ 131 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL-DSN--RIAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVITV 131 (908)
T ss_pred hCC-CcCchHHhcchHh-cCC--ccccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 565 5888887655444 444 4889999999999999999866544 334999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccCCcc----------------ccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKGGED----------------EKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~~~~----------------d~l~~lv~dE 195 (284)
|++||.|...++..|..++|++|.++.|+... +...-...++|+..+..-.-+ ..+.+.++||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~-~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDE 210 (908)
T PRK13107 132 NDYLARRDAENNRPLFEFLGLTVGINVAGLGQ-QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDE 210 (908)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCCCCH-HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecc
Confidence 99999999999999999999999998887554 333334467876655322111 2334467788
Q ss_pred CCccc
Q 042526 196 LSQPK 200 (284)
Q Consensus 196 Ad~m~ 200 (284)
+|.|+
T Consensus 211 vDsiL 215 (908)
T PRK13107 211 VDSIL 215 (908)
T ss_pred hhhhc
Confidence 88743
No 82
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.03 E-value=1.2e-09 Score=109.66 Aligned_cols=72 Identities=25% Similarity=0.153 Sum_probs=60.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh-c
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL-K 148 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~-~ 148 (284)
..++.+++.|+||||||+||++|++..+... .+.++||++||++|+.|+...+..+. +
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~ 72 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLTAE 72 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHHHh
Confidence 7789999999999999999999999876532 24679999999999999999999988 4
Q ss_pred CC--CceeEEEeCCCc
Q 042526 149 SN--SLTLAMAAGSPL 162 (284)
Q Consensus 149 ~~--~i~v~~~~G~~~ 162 (284)
.+ .++++++.|...
T Consensus 73 ~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 73 GLAGPVQAGFFPGSQE 88 (636)
T ss_pred hcCCCeeEEEEECCcc
Confidence 43 566777777643
No 83
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.82 E-value=1.9e-08 Score=79.39 Aligned_cols=112 Identities=28% Similarity=0.189 Sum_probs=76.9
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCc
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL 152 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i 152 (284)
+++++.++||||||..++..+...+... ....+||++|++.|+.|....+...... .+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~ 58 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------------------KGGQVLVLAPTRELANQVAERLKELFGE-GI 58 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-Cc
Confidence 4689999999999999988877654431 3467999999999999999999887765 66
Q ss_pred eeEEEeCCCcchH-HHHHhcCCCccccccc---------CCccccccccCCCCCCccccccccc
Q 042526 153 TLAMAAGSPLLTS-EHSNRRKPNKRKRTRK---------GGEDEKLDSLKWNPLSQPKTTTLLP 206 (284)
Q Consensus 153 ~v~~~~G~~~~~q-~~~l~~~~~i~v~~~~---------~~~~d~l~~lv~dEAd~m~~~gflp 206 (284)
.+..+.+.....+ ........++++.+.- .........+++||++.+....+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred EEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHH
Confidence 6767666644333 2233344555443311 0123467779999998876655433
No 84
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.82 E-value=2.3e-08 Score=91.90 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=59.4
Q ss_pred CCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 53 GFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 53 g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
-|. |+|.|.+.+..+ +..|.++++.||||||||++|++|++.++..... .....+++|+
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~ 67 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYL 67 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEE
Confidence 354 699999944433 2779999999999999999999999987654310 0023479999
Q ss_pred ecCHHHHHHHHHHHhhhh
Q 042526 130 NPTRELALQVLMVASPSL 147 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~ 147 (284)
++|..+..|....++++.
T Consensus 68 t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 68 SRTVSEIEKRLEELRKLM 85 (289)
T ss_pred eccHHHHHHHHHHHHhcc
Confidence 999999999888887764
No 85
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.82 E-value=2.3e-08 Score=91.90 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=59.4
Q ss_pred CCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 53 GFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 53 g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
-|. |+|.|.+.+..+ +..|.++++.||||||||++|++|++.++..... .....+++|+
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~ 67 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYL 67 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEE
Confidence 354 699999944433 2779999999999999999999999987654310 0023479999
Q ss_pred ecCHHHHHHHHHHHhhhh
Q 042526 130 NPTRELALQVLMVASPSL 147 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~ 147 (284)
++|..+..|....++++.
T Consensus 68 t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 68 SRTVSEIEKRLEELRKLM 85 (289)
T ss_pred eccHHHHHHHHHHHHhcc
Confidence 999999999888887764
No 86
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.77 E-value=2.1e-08 Score=100.83 Aligned_cols=120 Identities=17% Similarity=0.050 Sum_probs=82.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.-.+...|....-.. + |+|+|+++|||+|||+..+.-+++++-.. ..-++|+++||+
T Consensus 60 ~~~lR~YQ~eivq~A-L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------------------p~~KiVF~aP~~ 116 (746)
T KOG0354|consen 60 NLELRNYQEELVQPA-L-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------------------PKGKVVFLAPTR 116 (746)
T ss_pred cccccHHHHHHhHHh-h-cCCeEEEeecCCCccchHHHHHHHHHhcC---------------------CcceEEEeeCCc
Confidence 335677899988887 7 99999999999999999998888877553 236799999999
Q ss_pred HHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc-------c---cCCccccccccCCCCCCc
Q 042526 134 ELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT-------R---KGGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~-------~---~~~~~d~l~~lv~dEAd~ 198 (284)
-|+.|....+...+.. .++....|+ ....-...+-..+++.+.+ + ..+++..+..+|||||=+
T Consensus 117 pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 117 PLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR 190 (746)
T ss_pred hHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc
Confidence 9999988666655543 344333333 3333223333334443333 1 122345588899999988
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.71 E-value=5.9e-08 Score=93.43 Aligned_cols=119 Identities=17% Similarity=0.058 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|...|....-.. +. +|.+++-|||=|||+..++-+..++... .+ .+|+|+||+-|
T Consensus 15 e~R~YQ~~i~a~a-l~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~---------------------~~-kvlfLAPTKPL 70 (542)
T COG1111 15 EPRLYQLNIAAKA-LF-KNTLVVLPTGLGKTFIAAMVIANRLRWF---------------------GG-KVLFLAPTKPL 70 (542)
T ss_pred cHHHHHHHHHHHH-hh-cCeEEEecCCccHHHHHHHHHHHHHHhc---------------------CC-eEEEecCCchH
Confidence 4566777766665 43 4999999999999999888888777654 34 79999999999
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc---------ccCCccccccccCCCCCCc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT---------RKGGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~---------~~~~~~d~l~~lv~dEAd~ 198 (284)
+.|-+..|..+..-..-.++.+.|.........+-....+.+.| .-..+++++..++||||-+
T Consensus 71 V~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR 142 (542)
T COG1111 71 VLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR 142 (542)
T ss_pred HHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh
Confidence 99999999998776556778888876555433333333443333 1223688999999999988
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=1.3e-07 Score=93.43 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=66.0
Q ss_pred EEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeE
Q 042526 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155 (284)
Q Consensus 76 iv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~ 155 (284)
+++|+||||||.+|+..+ ..+.. .+-++|||+|+++|+.|++..++.. ++..++
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~----------------------~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLA----------------------LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHH----------------------cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEE
Confidence 468999999999996554 33332 2457999999999999999988764 355677
Q ss_pred EEeCCCcchHH----HHHhc-CCCccccccc--CCccccccccCCCCCCc
Q 042526 156 MAAGSPLLTSE----HSNRR-KPNKRKRTRK--GGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 156 ~~~G~~~~~q~----~~l~~-~~~i~v~~~~--~~~~d~l~~lv~dEAd~ 198 (284)
++.|+....+. ..+.. ..++++.++. ..-+.++..+++||+..
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~ 104 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFLPFKNLGLIIVDEEHD 104 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcCcccCCCEEEEECCCc
Confidence 77776443322 12222 3566665532 23467788899999754
No 89
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.7e-07 Score=97.66 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=66.6
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEE
Q 042526 47 KSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126 (284)
Q Consensus 47 ~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 126 (284)
......+|+ |-++|+.|+-++ .+|.+|+++||||||||+..-.++-..+.. +-++
T Consensus 111 ~~~~~~~F~-LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qrv 165 (1041)
T COG4581 111 PPAREYPFE-LDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQRV 165 (1041)
T ss_pred cHHHhCCCC-cCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCce
Confidence 334557886 889999999998 999999999999999998866665443332 3359
Q ss_pred EEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 127 LIINPTRELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 127 LIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
++.+|.++|.+|.+..+...-...--.+.+++|+
T Consensus 166 iYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 166 IYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred EeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 9999999999999998875543221123455554
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.53 E-value=3.7e-07 Score=91.01 Aligned_cols=145 Identities=19% Similarity=0.103 Sum_probs=109.3
Q ss_pred CCCCHHHHHH-HHHcCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 39 LRLHPLLMKS-IYKLGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 39 l~L~~~Ll~~-L~~~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
+.....++.. +..+.|. +|..|..+|..| ... .+=++++--|||||+..++.++..+..
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI-~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~------------ 310 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEI-LADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA------------ 310 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHH-HhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc------------
Confidence 3445555555 4678896 999999999998 332 345889999999999999999876533
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH----HHhcC-CCcccccc--cC--
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH----SNRRK-PNKRKRTR--KG-- 182 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~----~l~~~-~~i~v~~~--~~-- 182 (284)
|.|+..++||--||.|-+..+..+...++++|++++|.....+.. .+..+ .+++|.|- ..
T Consensus 311 -----------G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 311 -----------GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred -----------CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 678999999999999999999999999999999999885544433 34444 56666652 22
Q ss_pred CccccccccCCCCCCc--------cccccc-ccch
Q 042526 183 GEDEKLDSLKWNPLSQ--------PKTTTL-LPSS 208 (284)
Q Consensus 183 ~~~d~l~~lv~dEAd~--------m~~~gf-lp~~ 208 (284)
.++.+|-.++.||.-+ +...|. .|.+
T Consensus 380 V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~ 414 (677)
T COG1200 380 VEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHV 414 (677)
T ss_pred eeecceeEEEEeccccccHHHHHHHHHhCCCCCcE
Confidence 3577888888888665 555665 4555
No 91
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.51 E-value=2.1e-07 Score=77.88 Aligned_cols=67 Identities=21% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHc------CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 56 ESTSILKARIPALAH------QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 56 ~pT~iQ~~aip~il~------~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
.|.+.|.+|+-.++. ..+.+++.++||||||++++..+.... . .+||+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------------------------~~l~~ 56 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R-------------------------KVLIV 56 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-------------------------EEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c-------------------------ceeEe
Confidence 478999999998831 368999999999999988874333211 1 69999
Q ss_pred ecCHHHHHHHHHHHhhhhc
Q 042526 130 NPTRELALQVLMVASPSLK 148 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~ 148 (284)
||+..|+.|....+..+..
T Consensus 57 ~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 57 APNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp ESSHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999999966554
No 92
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.4e-07 Score=93.65 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=95.1
Q ss_pred HHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCe
Q 042526 46 MKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL 124 (284)
Q Consensus 46 l~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (284)
...|+. +||..+.|-|.++|..+ ++|+|+++.-|||.||++||-||.+-. .|
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~-l~g~d~lvvmPTGgGKSlCyQiPAll~-------------------------~G- 58 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDAL-LSGKDTLVVMPTGGGKSLCYQIPALLL-------------------------EG- 58 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHH-HcCCcEEEEccCCCCcchHhhhHHHhc-------------------------CC-
Confidence 345665 79999999999999999 999999999999999999999999753 13
Q ss_pred EEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-----CCccccc---------ccCCccccccc
Q 042526 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-----PNKRKRT---------RKGGEDEKLDS 190 (284)
Q Consensus 125 ~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-----~~i~v~~---------~~~~~~d~l~~ 190 (284)
-.|||+|...|-......++. .|+.++++.++-...+...+... .+++... +....--++..
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l 134 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISL 134 (590)
T ss_pred CEEEECchHHHHHHHHHHHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCce
Confidence 489999999998766666554 36778777777555554443332 1221111 00011224556
Q ss_pred cCCCCCCcccccc--cccchhhh
Q 042526 191 LKWNPLSQPKTTT--LLPSSLAL 211 (284)
Q Consensus 191 lv~dEAd~m~~~g--flp~~~~~ 211 (284)
+++|||=.....| |=|+-..+
T Consensus 135 ~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 135 VAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred EEechHHHHhhcCCccCHhHHHH
Confidence 7888888888777 77766444
No 93
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.50 E-value=9.4e-07 Score=91.08 Aligned_cols=103 Identities=23% Similarity=0.138 Sum_probs=74.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|| .|+..|+.+...+ ..|+++-+.||||.||| +|.+.+-..+.. .+-+++||+|
T Consensus 79 ~G~-~~ws~QR~WakR~-~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a~----------------------kgkr~yii~P 133 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRL-VRGKSFAIIAPTGVGKT-TFGLLMSLYLAK----------------------KGKRVYIIVP 133 (1187)
T ss_pred hCC-CchHHHHHHHHHH-HcCCceEEEcCCCCchh-HHHHHHHHHHHh----------------------cCCeEEEEec
Confidence 355 7999999999998 99999999999999999 555444333322 2467999999
Q ss_pred CHHHHHHHHHHHhhhhcCCC-ceeEE-EeCCCcchH----HHHHhc-CCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNS-LTLAM-AAGSPLLTS----EHSNRR-KPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~-i~v~~-~~G~~~~~q----~~~l~~-~~~i~v~~ 179 (284)
|+-|+.|+++.+..|+...+ ..+.+ +.|.-...+ ..++.+ ..+|++.+
T Consensus 134 T~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 134 TTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEe
Confidence 99999999999999997665 44433 555522222 223343 35666655
No 94
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.48 E-value=6.7e-07 Score=94.25 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 53 GFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 53 g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
|| .+.|-|.+.+..+ +..+..+++.|+||+|||+|||+|++...... +-+++|.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~----------------------~~~vvIs 311 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK----------------------EEPVVIS 311 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc----------------------CCeEEEE
Confidence 55 4889998855544 36788999999999999999999998654432 3569999
Q ss_pred ecCHHHHHHHHH-HHhhhhcCC--CceeEEEeCC
Q 042526 130 NPTRELALQVLM-VASPSLKSN--SLTLAMAAGS 160 (284)
Q Consensus 130 ~PTReLa~Qi~~-~~~~l~~~~--~i~v~~~~G~ 160 (284)
++|+.|-.|+.. .+-.|.+.+ .++++++-|.
T Consensus 312 T~T~~LQ~Ql~~kDiP~L~~~~~~~~~~~~lKGr 345 (928)
T PRK08074 312 TYTIQLQQQLLEKDIPLLQKIFPFPVEAALLKGR 345 (928)
T ss_pred cCCHHHHHHHHHhhHHHHHHHcCCCceEEEEEcc
Confidence 999999999865 343343333 4566666665
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=2e-06 Score=88.19 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=79.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|+ +|+++|..+-=.+ ..|+ |+.-.||+|||++..+|++..... +-++-|++|
T Consensus 77 ~g~-~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------------------G~~v~vvT~ 129 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT-----------------------GKGVHVVTV 129 (796)
T ss_pred hCC-CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------CCCeEEEec
Confidence 566 5999998887665 7776 889999999999999999876544 556899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
|--||.|=+..+..+...+|++|+++.|.....+. .-....+|.-.+
T Consensus 130 neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r-~~~y~~dI~Y~t 176 (796)
T PRK12906 130 NEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEK-RAAYNCDITYST 176 (796)
T ss_pred cHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHH-HHHhcCCCeecC
Confidence 99999999999999999999999999887544433 333345664443
No 96
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.38 E-value=3.1e-06 Score=85.60 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=79.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|+ +|+++|..+.-.+ +.|+ |+.-.||+|||++..+|++...+. +-.+-|++|
T Consensus 75 lg~-r~ydvQlig~l~L-l~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------------------G~~VhvvT~ 127 (764)
T PRK12326 75 LGL-RPFDVQLLGALRL-LAGD--VIEMATGEGKTLAGAIAAAGYALQ-----------------------GRRVHVITV 127 (764)
T ss_pred cCC-CcchHHHHHHHHH-hCCC--cccccCCCCHHHHHHHHHHHHHHc-----------------------CCCeEEEcC
Confidence 566 5999999999877 7773 668889999999999999865543 556899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
|--||.|=+..+..+...+|++|+++.+.....+ +.-....+|...+
T Consensus 128 NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~e-rr~aY~~DItYgT 174 (764)
T PRK12326 128 NDYLARRDAEWMGPLYEALGLTVGWITEESTPEE-RRAAYACDVTYAS 174 (764)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHH-HHHHHcCCCEEcC
Confidence 9999999999999999999999999988765444 3333356664443
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.35 E-value=1e-06 Score=93.96 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHH---c-CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA---H-QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~-~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.+.+.|..||..+. . ..+.++++.+||||||++. +.++.++.... ...++|||+|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~--------------------~~~rVLfLvD 471 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK--------------------RFRRILFLVD 471 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC--------------------ccCeEEEEec
Confidence 48999999998772 2 2468999999999999884 45556655431 2458999999
Q ss_pred CHHHHHHHHHHHhhhh
Q 042526 132 TRELALQVLMVASPSL 147 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~ 147 (284)
+++|+.|..+.+..+.
T Consensus 472 R~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 472 RSALGEQAEDAFKDTK 487 (1123)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998763
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.35 E-value=1.4e-06 Score=84.65 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHHHcC----CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 55 KESTSILKARIPALAHQ----RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~----G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
..|.+.|.+|+..+ .. ++..+++.|||+|||+.++..+-. + ...+||||
T Consensus 35 ~~lr~yQ~~al~a~-~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-------------------------~~~~Lvlv 87 (442)
T COG1061 35 FELRPYQEEALDAL-VKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-------------------------KRSTLVLV 87 (442)
T ss_pred CCCcHHHHHHHHHH-HhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-------------------------cCCEEEEE
Confidence 35899999999999 55 899999999999999877644321 1 12299999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
||++|+.|.+..+....... -.+..++|+
T Consensus 88 ~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~ 116 (442)
T COG1061 88 PTKELLDQWAEALKKFLLLN-DEIGIYGGG 116 (442)
T ss_pred CcHHHHHHHHHHHHHhcCCc-cccceecCc
Confidence 99999999986665543321 123445554
No 99
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.34 E-value=8.7e-07 Score=84.00 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=94.0
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC
Q 042526 44 LLMKSIYK-LGFKES-TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK 121 (284)
Q Consensus 44 ~Ll~~L~~-~g~~~p-T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (284)
.+..+|++ +|+..+ |+.|..|+..++....||.++-|||+||+|||-||.|-.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------------------- 60 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------------------- 60 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------------------
Confidence 45667776 688766 899999999997888899999999999999999998742
Q ss_pred CCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH----HHHHhc-CCCcccc--c-------------cc
Q 042526 122 GHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS----EHSNRR-KPNKRKR--T-------------RK 181 (284)
Q Consensus 122 ~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q----~~~l~~-~~~i~v~--~-------------~~ 181 (284)
.+ ..||+.|...|.....+.+.+|- +.+..+..--+... +..|.+ +|.+.+. + ..
T Consensus 61 ~g-ITIV~SPLiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 61 GG-ITIVISPLIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred CC-eEEEehHHHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 13 58999999999887777776652 22222222111111 112222 3444211 1 11
Q ss_pred CCccccccccCCCCCCcccccc--cccchhhhcc
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTT--LLPSSLALMN 213 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~g--flp~~~~~~~ 213 (284)
+..-+.|.+++.|||-....-| |=|+-+.+-.
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~ 169 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS 169 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhh
Confidence 1133568899999999877777 8888766533
No 100
>PRK09694 helicase Cas3; Provisional
Probab=98.28 E-value=2.6e-06 Score=88.77 Aligned_cols=86 Identities=23% Similarity=0.069 Sum_probs=62.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
...|+|+|..+.... ..+.-+|+.||||+|||.+.++.+. ++... ....+++|..||+
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~-~l~~~--------------------~~~~gi~~aLPT~ 341 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ--------------------GLADSIIFALPTQ 341 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh--------------------CCCCeEEEECcHH
Confidence 447999999886543 4566789999999999999876654 33332 1235789999999
Q ss_pred HHHHHHHHHHhhhhcCC--CceeEEEeCCC
Q 042526 134 ELALQVLMVASPSLKSN--SLTLAMAAGSP 161 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~--~i~v~~~~G~~ 161 (284)
.+++|++..+..+.... ...+.+..|..
T Consensus 342 Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a 371 (878)
T PRK09694 342 ATANAMLSRLEALASKLFPSPNLILAHGNS 371 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEeecCcc
Confidence 99999999998755432 34566666653
No 101
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.25 E-value=3.8e-06 Score=78.68 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=70.2
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042526 37 NELRLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEA 115 (284)
Q Consensus 37 ~~l~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~ 115 (284)
.+|+.+.+.-..|++ +..+.+.|.|.++|.+. +.|.|+++.-|||-||+|||-||+|- .
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~-ma~ed~~lil~tgggkslcyqlpal~---a---------------- 133 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINAT-MAGEDAFLILPTGGGKSLCYQLPALC---A---------------- 133 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhh-hccCceEEEEeCCCccchhhhhhHHh---c----------------
Confidence 346777777777766 67889999999999999 99999999999999999999999874 1
Q ss_pred hhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 116 EKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 116 ~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
.-.+||+||...|.....-+++.|+
T Consensus 134 -------dg~alvi~plislmedqil~lkqlg 158 (695)
T KOG0353|consen 134 -------DGFALVICPLISLMEDQILQLKQLG 158 (695)
T ss_pred -------CCceEeechhHHHHHHHHHHHHHhC
Confidence 2359999999999887766777663
No 102
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=5.2e-06 Score=85.74 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=77.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|...--.+ ..| -|+.-.||+|||++..+|++-..+. +..+-|++|
T Consensus 79 lGm-~~ydVQliGg~~L-h~G--~iaEM~TGEGKTLvA~l~a~l~al~-----------------------G~~VhvvT~ 131 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL-HEG--KIAEMRTGEGKTLVGTLAVYLNALS-----------------------GKGVHVVTV 131 (913)
T ss_pred hCC-CcchhHHHhhhHh-ccC--ccccccCCCCChHHHHHHHHHHHHc-----------------------CCCEEEEeC
Confidence 564 6899998765444 444 5778899999999999999765443 557899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR 180 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~ 180 (284)
|--||.|=+..+..+...+|++|+++.|.....+.+ -....+|+..+.
T Consensus 132 ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err-~~Y~~dI~YGT~ 179 (913)
T PRK13103 132 NDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKR-AAYAADITYGTN 179 (913)
T ss_pred CHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHH-HHhcCCEEEEcc
Confidence 999999999999999999999999998875544433 333366655553
No 103
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.22 E-value=1.4e-06 Score=93.27 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe--c----CHHHHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN--P----TRELAL 137 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~--P----TReLa~ 137 (284)
.|...+..++.+|++|+||||||. .||.+.. ... .+..+.|+| | +++||.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g--------------------~g~~g~I~~TQPRRlAArsLA~ 136 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICL--ELG--------------------RGVKGLIGHTQPRRLAARTVAN 136 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHH--HcC--------------------CCCCCceeeCCCcHHHHHHHHH
Confidence 343333667778888999999998 5784432 210 112223333 4 789999
Q ss_pred HHHHHHhh-hhcCCCceeEEEeCCCcchHHHHHhcCCCccccc--------ccCCccccccccCCCCCC-cccccccccc
Q 042526 138 QVLMVASP-SLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT--------RKGGEDEKLDSLKWNPLS-QPKTTTLLPS 207 (284)
Q Consensus 138 Qi~~~~~~-l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~--------~~~~~~d~l~~lv~dEAd-~m~~~gflp~ 207 (284)
||..++.. ++...|+.+ ....|. ...+.|++.| .....+.++..+|+|||| ++++++|+.+
T Consensus 137 RVA~El~~~lG~~VGY~v------rf~~~~---s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg 207 (1294)
T PRK11131 137 RIAEELETELGGCVGYKV------RFNDQV---SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG 207 (1294)
T ss_pred HHHHHHhhhhcceeceee------cCcccc---CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH
Confidence 99999875 444444322 111111 2234443333 112347889999999999 5999999876
Q ss_pred hh
Q 042526 208 SL 209 (284)
Q Consensus 208 ~~ 209 (284)
.+
T Consensus 208 ~L 209 (1294)
T PRK11131 208 YL 209 (1294)
T ss_pred HH
Confidence 44
No 104
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=5.7e-06 Score=84.41 Aligned_cols=79 Identities=8% Similarity=-0.056 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 56 ESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.+.|.|..|+..++..| +.-+++.|||+|||+..+..+. ++ .-.+||||||.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------------------------CCCEEEEeCcH
Confidence 47899999999884455 3778899999999988764332 21 12489999999
Q ss_pred HHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 134 ELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
+|+.|+.+.+..+.......+..++|+
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~ 335 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSD 335 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 999999999998865444556666665
No 105
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.20 E-value=1.1e-05 Score=82.83 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCCCcHHHHHHHHHHH---cC-----CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCe
Q 042526 53 GFKESTSILKARIPALA---HQ-----RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL 124 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il---~~-----G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (284)
||+ +.+-|.+.+-.+. .. ++.+++-|+||+|||+|||+|++-..... +-
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~k 79 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------------------KK 79 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------------------CC
Confidence 664 8888988665552 33 36789999999999999999998655442 34
Q ss_pred EEEEEecCHHHHHHHH-HHHhhhhcCCC--ceeEEEeCC
Q 042526 125 RALIINPTRELALQVL-MVASPSLKSNS--LTLAMAAGS 160 (284)
Q Consensus 125 ~aLIL~PTReLa~Qi~-~~~~~l~~~~~--i~v~~~~G~ 160 (284)
++||-+.|..|=.|+. +.+-.|.+.++ ++++++=|.
T Consensus 80 ~vVIST~T~~LQeQL~~kDlP~l~~~l~~~~~~~llKGr 118 (697)
T PRK11747 80 KLVISTATVALQEQLVSKDLPLLLKISGLDFKFTLAKGR 118 (697)
T ss_pred eEEEEcCCHHHHHHHHhhhhhHHHHHcCCCceEEEEcCc
Confidence 6999999999999984 45555555443 455555443
No 106
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.18 E-value=1.1e-05 Score=83.04 Aligned_cols=100 Identities=18% Similarity=0.087 Sum_probs=76.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|+. |+++|..+.=.+ . ..-|+...||.|||+++.+|+.-..+. +-.+-|+++
T Consensus 73 lG~r-~ydvQlig~l~L-~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------------------G~~VhVvT~ 125 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL-N--DGKIAEMKTGEGKTLVATLPAYLNALT-----------------------GKGVHIVTV 125 (870)
T ss_pred hCCC-CCchHhhhhHhh-c--CCccccccCCCCchHHHHHHHHHHHhc-----------------------CCceEEEeC
Confidence 6775 999998876433 3 457889999999999999999633322 456899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
+..||.+-+..+..+...+|++|.++.++....+ +.-....+|.-.+
T Consensus 126 NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~e-rr~aY~~DItYgT 172 (870)
T CHL00122 126 NDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEE-RKKNYLKDITYVT 172 (870)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHH-HHHhcCCCCEecC
Confidence 9999999999999999999999998877654433 4444455664443
No 107
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.18 E-value=5.9e-06 Score=83.90 Aligned_cols=74 Identities=27% Similarity=0.228 Sum_probs=60.8
Q ss_pred HcCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 51 KLGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
.+..-.|.+.|.+++-.+ +..|+.+++.||||||||++||+|+|...... +..++
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~vi 67 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKVI 67 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcEE
Confidence 345557999999988655 25567799999999999999999999876553 35799
Q ss_pred EEecCHHHHHHHHHHHhhh
Q 042526 128 IINPTRELALQVLMVASPS 146 (284)
Q Consensus 128 IL~PTReLa~Qi~~~~~~l 146 (284)
|.++|+.|-.|+......+
T Consensus 68 ist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 68 ISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EECCCHHHHHHHHHhhcch
Confidence 9999999999999888775
No 108
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.13 E-value=8.7e-06 Score=85.48 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 042526 40 RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119 (284)
Q Consensus 40 ~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (284)
.+|.+-..++. |+..+.+||....++.+....++++|||||+|||...++-+|+.+...... -...
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~------------dgs~ 360 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE------------DGSV 360 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc------------ccce
Confidence 46666666654 667799999999999855567999999999999999999999988664210 0222
Q ss_pred CCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc
Q 042526 120 PKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162 (284)
Q Consensus 120 ~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~ 162 (284)
+......++++|+..|+..+...+.+-...+|++|.-.+|...
T Consensus 361 nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 361 NLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred ecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 3345689999999999998888777777778999988888754
No 109
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=1.3e-05 Score=82.35 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=62.8
Q ss_pred cCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEE
Q 042526 52 LGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI 128 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLI 128 (284)
+-|..+.|.|.+.+..+ +..|.++++.||||||||+|.|.|+|..+.... ..++.++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------------------~~~kIiy 65 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------------------EVRKIIY 65 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------------------ccccEEE
Confidence 34676789998877655 367999999999999999999999998765421 2468999
Q ss_pred EecCHHHHHHHHHHHhhhh
Q 042526 129 INPTRELALQVLMVASPSL 147 (284)
Q Consensus 129 L~PTReLa~Qi~~~~~~l~ 147 (284)
.+.|..-..|+.++++++.
T Consensus 66 ~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 66 ASRTHSQLEQATEELRKLM 84 (705)
T ss_pred EcccchHHHHHHHHHHhhh
Confidence 9999999999999999865
No 110
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.02 E-value=8.7e-06 Score=83.54 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=61.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+.|+ |-++|++||-++ .+|..|+|.|+|-+|||+..-.++... +. .+.++++-+|
T Consensus 294 ~pFe-lD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAiala---q~--------------------h~TR~iYTSP 348 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALA---QK--------------------HMTRTIYTSP 348 (1248)
T ss_pred CCCC-ccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHH---Hh--------------------hccceEecch
Confidence 4564 778999999998 999999999999999998854443221 11 2557999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
-++|.+|-++.++.-....| +++|+
T Consensus 349 IKALSNQKfRDFk~tF~Dvg----LlTGD 373 (1248)
T KOG0947|consen 349 IKALSNQKFRDFKETFGDVG----LLTGD 373 (1248)
T ss_pred hhhhccchHHHHHHhccccc----eeecc
Confidence 99999999999987655444 55555
No 111
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.83 E-value=8.8e-05 Score=76.64 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=77.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|...--.+ +.| -|+.-.||-||||++.+|+.-..+. +..+-|+++
T Consensus 82 lG~-r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~-----------------------GkgVhVVTv 134 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT-----------------------GKGVHVVTV 134 (939)
T ss_pred hCC-CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc-----------------------CCCeEEEeC
Confidence 566 4899998766544 444 5789999999999999999764433 445899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
+--||..=+..+..+...+|++|+++.++. ..+.+......||...+
T Consensus 135 NdYLA~RDae~m~~vy~~LGLtvg~i~~~~-~~~err~aY~~DItYgT 181 (939)
T PRK12902 135 NDYLARRDAEWMGQVHRFLGLSVGLIQQDM-SPEERKKNYACDITYAT 181 (939)
T ss_pred CHHHHHhHHHHHHHHHHHhCCeEEEECCCC-ChHHHHHhcCCCeEEec
Confidence 999999999999999999999999887654 33445555667775544
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.80 E-value=8.3e-05 Score=75.99 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHcC---CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPALAHQ---RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~---G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
..++-|+.|+..+..+ -.-.++.+.||||||-+|+=. +...+.. +-++|||+|-
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~-i~~~L~~----------------------GkqvLvLVPE 254 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEA-IAKVLAQ----------------------GKQVLVLVPE 254 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHH-HHHHHHc----------------------CCEEEEEecc
Confidence 5678999999998433 267899999999999999644 4444442 5689999999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH-----HHHHhcCCCcccccccCCc--cccccccCCCC
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTS-----EHSNRRKPNKRKRTRKGGE--DEKLDSLKWNP 195 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q-----~~~l~~~~~i~v~~~~~~~--~d~l~~lv~dE 195 (284)
..|..|+...++.. ++..++++.++-+..+ .+.......+++.++.-.+ +.+|--++.||
T Consensus 255 I~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDE 321 (730)
T COG1198 255 IALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDE 321 (730)
T ss_pred ccchHHHHHHHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEec
Confidence 99999998888754 3456666666533222 2222334556666654433 56777766666
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.77 E-value=5e-05 Score=79.57 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=69.6
Q ss_pred HHHHH-HHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCC
Q 042526 45 LMKSI-YKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGH 123 (284)
Q Consensus 45 Ll~~L-~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (284)
++..| ..+|+..+.|-|.+||-.+ +.|+|+++..|||.||.+||-||++- .+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~-l~Gkd~fvlmpTG~GKSLCYQlPA~l--------------------------~~ 304 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINAT-LSGKDCFVLMPTGGGKSLCYQLPALL--------------------------LG 304 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHH-HcCCceEEEeecCCceeeEeeccccc--------------------------cC
Confidence 44444 4589999999999999988 99999999999999999999999863 12
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcch
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLT 164 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~ 164 (284)
...|||.|...|.......+ ...+|..+.+.|+....
T Consensus 305 gitvVISPL~SLm~DQv~~L----~~~~I~a~~L~s~q~~~ 341 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHL----SKKGIPACFLSSIQTAA 341 (941)
T ss_pred CceEEeccHHHHHHHHHHhh----hhcCcceeeccccccHH
Confidence 26899999999976544444 23477777777776554
No 114
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.68 E-value=0.00017 Score=65.57 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=67.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+ .|.++|..++=.+ ..|+ |+.=.||-|||++..+|++-..+. +-.+=|++.
T Consensus 74 ~g~-~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------------------G~~V~vvT~ 126 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNALQ-----------------------GKGVHVVTS 126 (266)
T ss_dssp TS-----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------------SS-EEEEES
T ss_pred cCC-cccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------------cCCcEEEec
Confidence 566 5999999999766 6676 889999999999998888654433 456889999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
+.-||..=+..+..|...+|++|.++.++....+
T Consensus 127 NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 127 NDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEE 160 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHH
T ss_pred cHHHhhccHHHHHHHHHHhhhccccCccccCHHH
Confidence 9999999999999999999999999988766544
No 115
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.67 E-value=5.6e-05 Score=81.38 Aligned_cols=129 Identities=18% Similarity=0.118 Sum_probs=68.9
Q ss_pred cCCCCCcHHHH--HHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 52 LGFKESTSILK--ARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 52 ~g~~~pT~iQ~--~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
..|....||.. ..|...+..+..+|++|+||||||. .+|.+.. ... . ......++.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~~-----------------~-~~~~~I~~t 117 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL--ELG-----------------R-GSHGLIGHT 117 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--HcC-----------------C-CCCceEecC
Confidence 46766677766 3444443667788999999999997 4575532 210 0 011122233
Q ss_pred ecCHHHHHHHHHHHhhhhcCCCceeEEEeCC--CcchHHHHHhcCCCccccc--------ccCCccccccccCCCCCC-c
Q 042526 130 NPTRELALQVLMVASPSLKSNSLTLAMAAGS--PLLTSEHSNRRKPNKRKRT--------RKGGEDEKLDSLKWNPLS-Q 198 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~--~~~~q~~~l~~~~~i~v~~--------~~~~~~d~l~~lv~dEAd-~ 198 (284)
-|-|--|..++. +++..++..+...+|- ....+. .....|.+.| .....+.++.++|+|||+ +
T Consensus 118 QPRRlAA~svA~---RvA~elg~~lG~~VGY~vR~~~~~---s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHER 191 (1283)
T TIGR01967 118 QPRRLAARTVAQ---RIAEELGTPLGEKVGYKVRFHDQV---SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHER 191 (1283)
T ss_pred CccHHHHHHHHH---HHHHHhCCCcceEEeeEEcCCccc---CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchh
Confidence 355544444333 2333334333333332 111111 1223332222 122357889999999999 5
Q ss_pred ccccccccch
Q 042526 199 PKTTTLLPSS 208 (284)
Q Consensus 199 m~~~gflp~~ 208 (284)
+++++|+-+.
T Consensus 192 sL~~D~LL~l 201 (1283)
T TIGR01967 192 SLNIDFLLGY 201 (1283)
T ss_pred hccchhHHHH
Confidence 9999988764
No 116
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.65 E-value=0.00043 Score=73.14 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHH---HcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 40 RLHPLLMKSIYK-LGFKESTSILKARIPAL---AHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 40 ~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~i---l~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
..+......+.+ ++|+ -||=|..||..+ +.++ .|=++|+--|-|||-..+=++.-.+
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------------- 640 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------------- 640 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh----------------
Confidence 345555555544 6775 899999999988 2334 4889999999999977664443322
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHh----c-CCCcccccccCC----c
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNR----R-KPNKRKRTRKGG----E 184 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~----~-~~~i~v~~~~~~----~ 184 (284)
..+.|+.|||||--||.|-++.++.=...++++|..+.-.....+..... . ..||+|.|-.+. .
T Consensus 641 -------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~ 713 (1139)
T COG1197 641 -------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK 713 (1139)
T ss_pred -------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE
Confidence 24689999999999999999999876677788888877665444443332 2 377887773332 3
Q ss_pred cccccccCCCCCCc
Q 042526 185 DEKLDSLKWNPLSQ 198 (284)
Q Consensus 185 ~d~l~~lv~dEAd~ 198 (284)
+..|--|+.||--+
T Consensus 714 FkdLGLlIIDEEqR 727 (1139)
T COG1197 714 FKDLGLLIIDEEQR 727 (1139)
T ss_pred EecCCeEEEechhh
Confidence 44555566666433
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.65 E-value=0.00013 Score=74.46 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=52.9
Q ss_pred CcHHHHHHHHHHH---cC------CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 57 STSILKARIPALA---HQ------RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 57 pT~iQ~~aip~il---~~------G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
|.+.|..|+..++ .. .+..++..+||||||++.+.-+. .+... ...+++|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~--------------------~~~~~vl 297 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL--------------------LKNPKVF 297 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh--------------------cCCCeEE
Confidence 5678988887762 22 35688889999999987655443 22221 1467899
Q ss_pred EEecCHHHHHHHHHHHhhhhc
Q 042526 128 IINPTRELALQVLMVASPSLK 148 (284)
Q Consensus 128 IL~PTReLa~Qi~~~~~~l~~ 148 (284)
||+|+++|..|+.+.+..+..
T Consensus 298 ~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 298 FVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred EEECcHHHHHHHHHHHHhhCC
Confidence 999999999999999998753
No 118
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.62 E-value=0.00018 Score=62.24 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHcCCCc-EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 57 STSILKARIPALAHQRKD-VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~d-viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
+.+-|..||-.+ +.... .++++|+|||||. .+..++..+..... ......+...||++||..-
T Consensus 2 ln~~Q~~Ai~~~-~~~~~~~~i~GpPGTGKT~-~l~~~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~a 65 (236)
T PF13086_consen 2 LNESQREAIQSA-LSSNGITLIQGPPGTGKTT-TLASIIAQLLQRFK--------------SRSADRGKKILVVSPSNAA 65 (236)
T ss_dssp --HHHHHHHHHH-CTSSE-EEEE-STTSSHHH-HHHHHHHHH---------------------HCCCSS-EEEEESSHHH
T ss_pred CCHHHHHHHHHH-HcCCCCEEEECCCCCChHH-HHHHHHHHhccchh--------------hhhhhccccceeecCCchh
Confidence 568899999988 78888 9999999999993 33445554432100 0112356789999999999
Q ss_pred HHHHHHHHhh
Q 042526 136 ALQVLMVASP 145 (284)
Q Consensus 136 a~Qi~~~~~~ 145 (284)
+.++...+..
T Consensus 66 vd~~~~~l~~ 75 (236)
T PF13086_consen 66 VDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998887
No 119
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.56 E-value=7.1e-05 Score=78.90 Aligned_cols=99 Identities=22% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
|....|||.++++.+.....+|++.||+|||||.+.-+.++. . ...-+|++++|.-
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~---------------------~~~~~~vyi~p~~ 1196 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P---------------------DTIGRAVYIAPLE 1196 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C---------------------ccceEEEEecchH
Confidence 334489999999999777889999999999999999888775 1 1356899999999
Q ss_pred HHHHHHHHHHh-hhhcCCCceeEEEeCCCcchHHHHHhcCCCcccc
Q 042526 134 ELALQVLMVAS-PSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKR 178 (284)
Q Consensus 134 eLa~Qi~~~~~-~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~ 178 (284)
+.+.-.+..+. +|....|..+.-++|..... ..+....++++.
T Consensus 1197 ~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~--lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1197 EIADEQYRDWEKKFSKLLGLRIVKLTGETSLD--LKLLQKGQVIIS 1240 (1674)
T ss_pred HHHHHHHHHHHHhhccccCceEEecCCccccc--hHHhhhcceEEe
Confidence 99998777765 56666788888888886554 333444444443
No 120
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.55 E-value=0.00046 Score=59.84 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHHHcCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 56 ESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
++|+-|..|+-.++.++ +-++++++.|||||.+ +-.+...+.. .+..+++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~---------------------~g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA---------------------AGKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH---------------------TT--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh---------------------CCCeEEEECCcHH
Confidence 46888999999984444 3477889999999953 3333333332 2467999999999
Q ss_pred HHHHHHHHH
Q 042526 135 LALQVLMVA 143 (284)
Q Consensus 135 La~Qi~~~~ 143 (284)
.+..+...+
T Consensus 58 Aa~~L~~~~ 66 (196)
T PF13604_consen 58 AAKELREKT 66 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 988877763
No 121
>PF13245 AAA_19: Part of AAA domain
Probab=97.55 E-value=0.00038 Score=51.24 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=36.5
Q ss_pred CCc-EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHH
Q 042526 72 RKD-VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143 (284)
Q Consensus 72 G~d-viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~ 143 (284)
+.. +++.|++|||||...+- ++..+.... ... +-++||++||+..+..+.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~-----------------~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAA-RIAELLAAR-----------------ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHH-HHHHHHHHh-----------------cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 445 45599999999965543 333333221 111 557999999999999998887
No 122
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.49 E-value=0.00013 Score=73.52 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
+-|+|..||-.+ -++.+|++.|.|.+|||.+.-.+|...+... -++|+-+|-++|.
T Consensus 130 LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------------------QRVIYTSPIKALS 185 (1041)
T KOG0948|consen 130 LDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------------------QRVIYTSPIKALS 185 (1041)
T ss_pred cCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------------------CeEEeeChhhhhc
Confidence 568999999999 9999999999999999998777776655443 2699999999999
Q ss_pred HHHHHHHhhhhcCCC
Q 042526 137 LQVLMVASPSLKSNS 151 (284)
Q Consensus 137 ~Qi~~~~~~l~~~~~ 151 (284)
+|-|+++..=.+..|
T Consensus 186 NQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 186 NQKYRELLEEFKDVG 200 (1041)
T ss_pred chhHHHHHHHhcccc
Confidence 999998865434333
No 123
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.26 E-value=0.00091 Score=60.69 Aligned_cols=70 Identities=20% Similarity=0.069 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
+|+-|..+|-. ...+++|.|..|||||.+.+--++..+... .....+.|+|++|+..|
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-------------------~~~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-------------------GVPPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-------------------SSTGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccc-------------------cCChHHheecccCHHHH
Confidence 47889998864 477999999999999977655544333221 12344699999999999
Q ss_pred HHHHHHHhhhhc
Q 042526 137 LQVLMVASPSLK 148 (284)
Q Consensus 137 ~Qi~~~~~~l~~ 148 (284)
..+...+..+..
T Consensus 59 ~e~~~ri~~~l~ 70 (315)
T PF00580_consen 59 QEMRERIRELLE 70 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999998887654
No 124
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.17 E-value=0.0019 Score=65.77 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+++.|..|+..++.....+++++|+|||||.+. .-++..+.. .+.++||++||..-
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~----------------------~g~~VLv~a~sn~A 213 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK----------------------RGLRVLVTAPSNIA 213 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH----------------------cCCCEEEEcCcHHH
Confidence 4588999999988333367889999999999544 344433333 24589999999999
Q ss_pred HHHHHHHHhh
Q 042526 136 ALQVLMVASP 145 (284)
Q Consensus 136 a~Qi~~~~~~ 145 (284)
|.++...+..
T Consensus 214 vd~l~e~l~~ 223 (637)
T TIGR00376 214 VDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHh
Confidence 9998887765
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.002 Score=63.15 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHH----cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA----HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il----~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+.=|-.||..+. ..-+.-++.+-||||||++.. -+|. +. +.| +|||+|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~---~~---------------------~rP-tLV~Ah 65 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIA---KV---------------------QRP-TLVLAH 65 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHH---Hh---------------------CCC-eEEEec
Confidence 36666777776652 223467788899999996643 1222 21 122 899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCce
Q 042526 132 TRELALQVLMVASPSLKSNSLT 153 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~ 153 (284)
.+-||-|+|++++.|....-+.
T Consensus 66 NKTLAaQLy~Efk~fFP~NaVE 87 (663)
T COG0556 66 NKTLAAQLYSEFKEFFPENAVE 87 (663)
T ss_pred chhHHHHHHHHHHHhCcCcceE
Confidence 9999999999999998765543
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.98 E-value=0.0021 Score=66.49 Aligned_cols=77 Identities=23% Similarity=0.158 Sum_probs=60.3
Q ss_pred CcHHHHHHHHHHH--cCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 57 STSILKARIPALA--HQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 57 pT~iQ~~aip~il--~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
+.+.|..++..+. .... .+++.||||.|||.+.+++++..+... .....+.+++.|+|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~~ 256 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPFR 256 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccHH
Confidence 3788888887762 1234 789999999999999999988765542 12467899999999
Q ss_pred HHHHHHHHHHhhhhcCCCc
Q 042526 134 ELALQVLMVASPSLKSNSL 152 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i 152 (284)
.++.++++.++......++
T Consensus 257 t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 257 TIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred HHHHHHHHHHHhhhccccc
Confidence 9999999999987665443
No 127
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.78 E-value=0.0042 Score=56.07 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~ 150 (284)
..+..+++-.+|+|||+..+.-+. .+.... .....-.+|||||+ .+..|...++..+....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~-----------------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~ 84 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEF-----------------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD 84 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCC-----------------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhcc-----------------ccccccceeEeecc-chhhhhhhhhccccccc
Confidence 457889999999999977654433 333311 11111249999999 88899999999998655
Q ss_pred CceeEEEeCCC
Q 042526 151 SLTLAMAAGSP 161 (284)
Q Consensus 151 ~i~v~~~~G~~ 161 (284)
.+.+.++.|..
T Consensus 85 ~~~v~~~~~~~ 95 (299)
T PF00176_consen 85 SLRVIIYDGDS 95 (299)
T ss_dssp TS-EEEESSSC
T ss_pred ccccccccccc
Confidence 66777777776
No 128
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.72 E-value=0.003 Score=65.41 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=82.5
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARI--PALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~ai--p~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~ 108 (284)
+....|..-+++....-.....|+..++..|..|+ |.+ +.+.++|..+||+-|||++.-|-++..++..+
T Consensus 198 tl~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~-~e~~nliys~Pts~gktlvaeilml~~~l~~r------- 269 (1008)
T KOG0950|consen 198 TLLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRL-LERKNLIYSLPTSAGKTLVAEILMLREVLCRR------- 269 (1008)
T ss_pred hhhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhh-hcccceEEeCCCccchHHHHHHHHHHHHHHHh-------
Confidence 33334444333333334445689999999999988 677 78999999999999999999999998877653
Q ss_pred hhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC
Q 042526 109 EEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP 161 (284)
Q Consensus 109 ~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~ 161 (284)
-.++.+.|....+..-...+..|+...|+.|-.++|..
T Consensus 270 ---------------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~ 307 (1008)
T KOG0950|consen 270 ---------------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRF 307 (1008)
T ss_pred ---------------hceeEecceeehhHHHHhhhhhhccccCCcchhhcccC
Confidence 13777778888877777788888888999998888764
No 129
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.71 E-value=0.0033 Score=52.03 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=38.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
.|.=-++--.+|+|||--.+.-++..... .+.+.|||.|||.+|..++..++.+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----------------------~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----------------------RRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----------------------TT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----------------------ccCeEEEecccHHHHHHHHHHHhcC
Confidence 45556778889999998777666654444 2568999999999999999988755
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.61 E-value=0.0097 Score=61.83 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=74.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|...-=.+ ..|+ |+.-.||-||||+..+|+.-..+. |-.+-|++.
T Consensus 75 lG~-r~ydVQliGglvL-h~G~--IAEMkTGEGKTLvAtLpayLnAL~-----------------------GkgVhVVTv 127 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL-DLGS--VAEMKTGEGKTITSIAPVYLNALT-----------------------GKGVIVSTV 127 (925)
T ss_pred hCC-CcCchHHHHHHHH-hcCC--eeeecCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 566 6999998877655 6664 788999999999999998654333 334778888
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
+-=||..=...+..+...+|++|+++..+....+ +.-....+|...+
T Consensus 128 NdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~-rr~aY~~DItYgT 174 (925)
T PRK12903 128 NEYLAERDAEEMGKVFNFLGLSVGINKANMDPNL-KREAYACDITYSV 174 (925)
T ss_pred chhhhhhhHHHHHHHHHHhCCceeeeCCCCChHH-HHHhccCCCeeec
Confidence 8999999899999999999999988876543333 3334456664443
No 131
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0061 Score=56.97 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
++||.|..+-..+ +.+..|++++|-||+|||-. +.+.++..+++ |-++.|.+|-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~----------------------G~~vciASPR 153 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ----------------------GGRVCIASPR 153 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc----------------------CCeEEEecCc
Confidence 6788887765544 26688999999999999953 45666666553 5678888999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc--ccCCccccccccCCCCCCc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT--RKGGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~--~~~~~~d~l~~lv~dEAd~ 198 (284)
.+.|..++..++.-.. ++.+.+++|++..... . .+++.+ ..+.+-+...-+..||.|-
T Consensus 154 vDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-----~-plvVaTtHQLlrFk~aFD~liIDEVDA 213 (441)
T COG4098 154 VDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-----A-PLVVATTHQLLRFKQAFDLLIIDEVDA 213 (441)
T ss_pred ccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-----c-cEEEEehHHHHHHHhhccEEEEecccc
Confidence 9999988888775433 4677788887654432 2 333333 1223444555566677665
No 132
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.42 E-value=0.0089 Score=55.85 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 45 Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
-+..|-..|+ +++.|...+..++..+.+++++++|||||| +++-.++..+
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhh
Confidence 4455555665 567788888766588999999999999999 6666666544
No 133
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.42 E-value=0.0071 Score=60.11 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHcCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 56 ESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
.+.+-|.+|+... ... .-+++++|+|||||.+...-+.+ +... +-++||.+||++
T Consensus 185 ~ln~SQk~Av~~~-~~~k~l~~I~GPPGTGKT~TlvEiI~q-lvk~----------------------~k~VLVcaPSn~ 240 (649)
T KOG1803|consen 185 NLNSSQKAAVSFA-INNKDLLIIHGPPGTGKTRTLVEIISQ-LVKQ----------------------KKRVLVCAPSNV 240 (649)
T ss_pred cccHHHHHHHHHH-hccCCceEeeCCCCCCceeeHHHHHHH-HHHc----------------------CCeEEEEcCchH
Confidence 3456889999887 444 45688999999999776554444 4442 357999999999
Q ss_pred HHHHHHHHH
Q 042526 135 LALQVLMVA 143 (284)
Q Consensus 135 La~Qi~~~~ 143 (284)
-+.-|.+.+
T Consensus 241 AVdNiverl 249 (649)
T KOG1803|consen 241 AVDNIVERL 249 (649)
T ss_pred HHHHHHHHh
Confidence 888887753
No 134
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.40 E-value=0.03 Score=57.89 Aligned_cols=67 Identities=24% Similarity=0.130 Sum_probs=46.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.++ .+++-|..|+-.+ ...+-+++.+.+|||||... -.++.. .... .....+++++|
T Consensus 320 ~~~-~l~~~Q~~Ai~~~-~~~~~~iitGgpGTGKTt~l-~~i~~~-~~~~-------------------~~~~~v~l~Ap 376 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTA-IQHKVVILTGGPGTGKTTIT-RAIIEL-AEEL-------------------GGLLPVGLAAP 376 (720)
T ss_pred cCC-CCCHHHHHHHHHH-HhCCeEEEECCCCCCHHHHH-HHHHHH-HHHc-------------------CCCceEEEEeC
Confidence 454 5899999999998 78889999999999999432 223322 2210 01145778899
Q ss_pred CHHHHHHHHH
Q 042526 132 TRELALQVLM 141 (284)
Q Consensus 132 TReLa~Qi~~ 141 (284)
|---|..+..
T Consensus 377 Tg~AA~~L~e 386 (720)
T TIGR01448 377 TGRAAKRLGE 386 (720)
T ss_pred chHHHHHHHH
Confidence 9888776554
No 135
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.39 E-value=0.02 Score=57.83 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHH
Q 042526 59 SILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQ 138 (284)
Q Consensus 59 ~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Q 138 (284)
..|+.|+-.+ +..+-+++.+++|||||... ..++..+.... .....+++++.+||---|..
T Consensus 148 ~~Qk~A~~~a-l~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA~r 208 (586)
T TIGR01447 148 NWQKVAVALA-LKSNFSLITGGPGTGKTTTV-ARLLLALVKQS-----------------PKQGKLRIALAAPTGKAAAR 208 (586)
T ss_pred HHHHHHHHHH-hhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------------cccCCCcEEEECCcHHHHHH
Confidence 6788899888 78889999999999999543 23333333221 00013578899999888877
Q ss_pred HHHHHhh
Q 042526 139 VLMVASP 145 (284)
Q Consensus 139 i~~~~~~ 145 (284)
+...+..
T Consensus 209 L~e~~~~ 215 (586)
T TIGR01447 209 LAESLRK 215 (586)
T ss_pred HHHHHHh
Confidence 7666544
No 136
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.24 E-value=0.02 Score=60.50 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=40.1
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~ 144 (284)
.++.+.-+||||||.+|+-.|+...... +....||+||+.+.-..+.+-++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------------------~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---------------------GLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---------------------CCcEEEEEeCCHHHHHHHHHHhh
Confidence 4789999999999999987776543221 35679999999999888877665
No 137
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.14 E-value=0.014 Score=54.64 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 47 KSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 47 ~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..+-..|. .++-|...+-.++..+.+++++++|||||| +++-.++..+
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT-Tll~aL~~~i 168 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT-TLANAVIAEI 168 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHH
Confidence 34445554 567788777777688899999999999999 4445555544
No 138
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.03 Score=55.08 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccC-CCCc--hHHhHHHHHHHHHHHHHHHHHHHhh-hh-------hhhhhcCCCCC
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAET-ESGK--TRAFGLPALQRLLEEREKAAKMLEE-KG-------EEAEKYAPKGH 123 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~T-GSGK--TlafllPil~~l~~~~~~~~~~~~~-~~-------~~~~~~~~~~~ 123 (284)
..+|+.|.+.+-+. .+-+|++..-.| ++|. +-.|++-+|+++++.+.+.-.+... .+ ...-.......
T Consensus 215 ~pltalQ~~L~~~m-~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIM-FNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHH-HhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 46799999999887 889999764333 3455 5679999999998875532222111 11 11112234567
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhc
Q 042526 124 LRALIINPTRELALQVLMVASPSLK 148 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~ 148 (284)
|.+|||||+||-|..|.+.+..++.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~ 318 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLS 318 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998854
No 139
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.07 E-value=0.035 Score=57.07 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..+|+-|+.|+- ....+++|.|..|||||.+.+ .-+.++.... ....-++|+|+.||.
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~------------------~~~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLV-ARAGWLLARG------------------QAQPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHH-HHHHHHHHhC------------------CCCHHHeEEEeccHH
Confidence 468999999984 334578999999999996554 3333333321 112336999999999
Q ss_pred HHHHHHHHHhhhhcCCCceeEEEe
Q 042526 135 LALQVLMVASPSLKSNSLTLAMAA 158 (284)
Q Consensus 135 La~Qi~~~~~~l~~~~~i~v~~~~ 158 (284)
.|..+...+.......++.+..+.
T Consensus 253 AA~em~eRL~~~lg~~~v~v~TFH 276 (684)
T PRK11054 253 AAEEMDERIRERLGTEDITARTFH 276 (684)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeHH
Confidence 999998887765543344444443
No 140
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.05 E-value=0.041 Score=55.83 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 58 TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 58 T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
++.|+.|+-.. +..+-+++.+++|||||.+. .-++..+.... ......+++.+||.--|.
T Consensus 154 ~d~Qk~Av~~a-~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~------------------~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVA-LTRRISVISGGPGTGKTTTV-AKLLAALIQLA------------------DGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHH-hcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc------------------CCCCcEEEEECCcHHHHH
Confidence 57899999887 88889999999999999543 22233222210 012356888899998888
Q ss_pred HHHHHHhhhh
Q 042526 138 QVLMVASPSL 147 (284)
Q Consensus 138 Qi~~~~~~l~ 147 (284)
.+...+....
T Consensus 214 rL~e~~~~~~ 223 (615)
T PRK10875 214 RLTESLGKAL 223 (615)
T ss_pred HHHHHHHhhh
Confidence 8887665433
No 141
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.00 E-value=0.012 Score=60.00 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHH---cCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA---HQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+--|..+|..+. ..| +..++.+-||||||+... -++ ... +..+|||+|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~----~~~---------------------~~p~Lvi~~ 62 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVI----AQV---------------------NRPTLVIAH 62 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHH----HHh---------------------CCCEEEEEC
Confidence 48899999998772 223 366789999999996643 222 211 123899999
Q ss_pred CHHHHHHHHHHHhhhhcC
Q 042526 132 TRELALQVLMVASPSLKS 149 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~ 149 (284)
+..+|.|+++.++.|...
T Consensus 63 n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 63 NKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999998754
No 142
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.019 Score=53.10 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 44 LLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 44 ~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.-+..|...|. +++-|...+..++..+.+++++++|||||| +++-.++..+
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~al~~~i 156 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKT-TLANALLAEI 156 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHh
Confidence 34455555554 556667777666577889999999999999 4444555444
No 143
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.93 E-value=0.032 Score=57.70 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHH---cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh--------------hhhhc
Q 042526 56 ESTSILKARIPALA---HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE--------------EAEKY 118 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~--------------~~~~~ 118 (284)
.|+|.|...+-.++ ..+.+.++-+||||||||+.|...|........+.......... .....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 48999988876662 55778999999999999999988887765543111111100000 00000
Q ss_pred -----CCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 119 -----APKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 119 -----~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
....-|...+=+-|..-..|+.+++++....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0123566677777777788888888877654
No 144
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.83 E-value=0.035 Score=55.97 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=58.0
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 48 SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 48 ~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
.+...|+..+..-|..|+.++ ++..=-++++|+|||||++-.--+++.+.. ..-.+|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~V-L~rplsLIQGPPGTGKTvtsa~IVyhl~~~----------------------~~~~VL 458 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHV-LQRPLSLIQGPPGTGKTVTSATIVYHLARQ----------------------HAGPVL 458 (935)
T ss_pred hhcCCCchhhchHHHHHHHHH-HcCCceeeecCCCCCceehhHHHHHHHHHh----------------------cCCceE
Confidence 344567788889999999999 877788999999999998765444443222 133489
Q ss_pred EEecCHHHHHHHHHHHhhh
Q 042526 128 IINPTRELALQVLMVASPS 146 (284)
Q Consensus 128 IL~PTReLa~Qi~~~~~~l 146 (284)
|.+|+.--+.|++.-+.+.
T Consensus 459 vcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 459 VCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred EEcccchhHHHHHHHHHhc
Confidence 9999999999988777643
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.79 E-value=0.021 Score=58.40 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=58.3
Q ss_pred EEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeE
Q 042526 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLA 155 (284)
Q Consensus 76 iv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~ 155 (284)
+..+.+|||||-.|+-.+-. .+. .+-++|||+|...|+.|+...++.... +..++
T Consensus 164 i~~~~~GSGKTevyl~~i~~-~l~----------------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~ 218 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAA-TLR----------------------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVA 218 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHH-HHH----------------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEE
Confidence 33444699999999754433 333 245799999999999999999885432 14566
Q ss_pred EEeCCCcchH----HHHHhcC-CCcccccccCCc--ccccccc-CCCCCCc
Q 042526 156 MAAGSPLLTS----EHSNRRK-PNKRKRTRKGGE--DEKLDSL-KWNPLSQ 198 (284)
Q Consensus 156 ~~~G~~~~~q----~~~l~~~-~~i~v~~~~~~~--~d~l~~l-v~dEAd~ 198 (284)
++.+.....+ ...+..+ ..|++.++...+ +.+|--+ ++||.|.
T Consensus 219 ~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 219 VLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEeccCCCCEEEEEcCCch
Confidence 6766643332 2223333 567776654332 3344333 3444443
No 146
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.79 E-value=0.019 Score=50.30 Aligned_cols=45 Identities=27% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
+...|+-|..++.++ +...-+++.+|.|||||+..+...++.+..
T Consensus 2 I~p~~~~Q~~~~~al-~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 2 IKPKNEEQKFALDAL-LNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ----SHHHHHHHHHH-HH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHH-HhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 345688999999998 677888999999999998888887776654
No 147
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.76 E-value=0.053 Score=57.98 Aligned_cols=123 Identities=15% Similarity=-0.006 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHH---cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPALA---HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.+.|+|..++.-++ ..|.+.|++-..|.|||+-. +.++..+.... ...+ ..|||||.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~------------------~~~g-p~LIVvP~ 228 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR------------------GITG-PHMVVAPK 228 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc------------------CCCC-CEEEEeCh
Confidence 57788998886542 36788899999999999764 34444443321 0112 37999996
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH--H-H-hcCCCcccccc--cC---Cccc--cccccCCCCCCcccc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH--S-N-RRKPNKRKRTR--KG---GEDE--KLDSLKWNPLSQPKT 201 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~--~-l-~~~~~i~v~~~--~~---~~~d--~l~~lv~dEAd~m~~ 201 (284)
.|..|+..++.+++. .+.+..++|........ . + ....++++.+- .. ..+. .-..+|+|||-++.+
T Consensus 229 -SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 229 -STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN 305 (1033)
T ss_pred -HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC
Confidence 556778888888865 45666777764332211 1 1 12234444321 00 0111 234689999877555
No 148
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.73 E-value=0.019 Score=58.87 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+++-|.+|+-.. ...++|.|.+|||||.+..--+. ++.... ....-+.|+|+.||..
T Consensus 2 ~Ln~~Q~~av~~~---~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~------------------~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV---TGPCLVLAGAGSGKTRVITNKIA-HLIRGC------------------GYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHH-HHHHhc------------------CCCHHHeeeEechHHH
Confidence 3789999998643 45788899999999977543333 333221 0112358999999999
Q ss_pred HHHHHHHHhhhhc
Q 042526 136 ALQVLMVASPSLK 148 (284)
Q Consensus 136 a~Qi~~~~~~l~~ 148 (284)
|..+...+..+..
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 9999888877643
No 149
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.68 E-value=0.018 Score=53.16 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=39.9
Q ss_pred cccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHH
Q 042526 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100 (284)
Q Consensus 27 ~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~ 100 (284)
..+|..+.+|++|++|+-+.+.+.. ..-=|+|.+|||||||.+ +.++|+++.+.
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3578999999999999987773321 112478999999999855 45778877664
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.56 E-value=0.039 Score=58.38 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+++|...=-.+ ..| -|+.-.||-||||+..+|+.-..+.. -.+-|++.+-=|
T Consensus 169 ~~yDVQliGgivL-h~G--~IAEM~TGEGKTLvAtlp~yLnAL~G-----------------------kgVHvVTVNDYL 222 (1112)
T PRK12901 169 VHYDVQLIGGVVL-HQG--KIAEMATGEGKTLVATLPVYLNALTG-----------------------NGVHVVTVNDYL 222 (1112)
T ss_pred cccchHHhhhhhh-cCC--ceeeecCCCCchhHHHHHHHHHHHcC-----------------------CCcEEEEechhh
Confidence 5777776654433 444 46788899999999999997655442 236677888889
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc------------------------ccCCcccccccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT------------------------RKGGEDEKLDSL 191 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~------------------------~~~~~~d~l~~l 191 (284)
|..=...+..+...+|++|.|+.......+.+.-....||...+ .-....|.+.|+
T Consensus 223 A~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 223 AKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred hhccHHHHHHHHHHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 98888888888889999999887644445555555666664333 112246677777
Q ss_pred CCCCCCccccc-ccccc
Q 042526 192 KWNPLSQPKTT-TLLPS 207 (284)
Q Consensus 192 v~dEAd~m~~~-gflp~ 207 (284)
..|||--.+.+ |-.|.
T Consensus 303 LIDEARTPLIISGp~~~ 319 (1112)
T PRK12901 303 LIDDARTPLIISGPVPK 319 (1112)
T ss_pred hhccccCcEEEeCCCCC
Confidence 77887774444 34343
No 151
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.38 E-value=0.035 Score=56.69 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
++|-|.+|+-. ...+++|.|..|||||.+.+--+. ++.... .......|+|+.|+.-|
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~------------------~~~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIA-YLIQNC------------------GYKARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHH-HHHHhc------------------CCCHHHeEEEeccHHHH
Confidence 67889998853 356899999999999966544333 333220 01233589999999999
Q ss_pred HHHHHHHhhhhc
Q 042526 137 LQVLMVASPSLK 148 (284)
Q Consensus 137 ~Qi~~~~~~l~~ 148 (284)
.++...+..+..
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 999998877654
No 152
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.35 E-value=0.057 Score=57.01 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+++|...=-.+ ..| -|+.-.||-||||+..+|+.-..+.. -.+=|++.+-=|
T Consensus 138 ~~ydVQLiGgivL-h~G--~IAEM~TGEGKTLvatlp~yLnAL~G-----------------------~gVHvVTvNDYL 191 (1025)
T PRK12900 138 VPYDVQLIGGIVL-HSG--KISEMATGEGKTLVSTLPTFLNALTG-----------------------RGVHVVTVNDYL 191 (1025)
T ss_pred cccchHHhhhHHh-hcC--CccccCCCCCcchHhHHHHHHHHHcC-----------------------CCcEEEeechHh
Confidence 5788887655444 444 46788899999999999997655442 235677777889
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc------------------------cCCcccccccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------------------------KGGEDEKLDSL 191 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------------------------~~~~~d~l~~l 191 (284)
|..=...+..+...+|++|.|+..++.. ..++-....||...+. -....|.+.|+
T Consensus 192 A~RDaewm~p~y~flGLtVg~i~~~~~~-~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 192 AQRDKEWMNPVFEFHGLSVGVILNTMRP-EERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred hhhhHHHHHHHHHHhCCeeeeeCCCCCH-HHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 9988888899999999999988665433 3445555666643331 11245667777
Q ss_pred CCCCCCccccc-ccccch
Q 042526 192 KWNPLSQPKTT-TLLPSS 208 (284)
Q Consensus 192 v~dEAd~m~~~-gflp~~ 208 (284)
..|||--.+.+ |-.|..
T Consensus 271 LIDeARTPLIISgp~~~~ 288 (1025)
T PRK12900 271 LIDEARTPLIISGPVPNA 288 (1025)
T ss_pred hhccccCceEEeCCCCCc
Confidence 77777664444 344433
No 153
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.12 E-value=0.16 Score=52.83 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
+++..+...-..++ .+++-|..|+-.++.+++-+++++++|||||. ++-.+..+...
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTt--ll~~i~~~~~~-------------------- 394 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKST--MLKAAREAWEA-------------------- 394 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHH--HHHHHHHHHHh--------------------
Confidence 44444433322343 48999999999883335677999999999984 33333333332
Q ss_pred CCCeEEEEEecCHHHHHHHHH
Q 042526 121 KGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~ 141 (284)
.+..+++++||---|..+..
T Consensus 395 -~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 395 -AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred -CCCeEEEEeCcHHHHHHHHh
Confidence 25678899999877766643
No 154
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.07 E-value=0.041 Score=56.27 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHH---cCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA---HQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|++.|..+|..++ ..| +..++.+.+|||||+.+. .+ .... +..+|||+|
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l----~~~~---------------------~r~vLIVt~ 65 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NV----IARL---------------------QRPTLVLAH 65 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HH----HHHh---------------------CCCEEEEEC
Confidence 59999999999872 123 256799999999997643 22 2211 224999999
Q ss_pred CHHHHHHHHHHHhhhhcC
Q 042526 132 TRELALQVLMVASPSLKS 149 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~ 149 (284)
+.++|.|+++.+..+...
T Consensus 66 ~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 66 NKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999888653
No 155
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.06 E-value=0.037 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=19.8
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
+..+++++||||||| +++-.++..+..
T Consensus 149 ~GlilI~G~TGSGKT-T~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKS-TLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHH-HHHHHHHHHHHh
Confidence 447899999999999 444566666543
No 156
>PRK10536 hypothetical protein; Provisional
Probab=94.95 E-value=0.047 Score=49.50 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=36.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.++..-+..|...+-.+ ..+.-+++.+++|||||+..+.-.++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al-~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLKAI-ESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45666788999999988 7788899999999999977666555544
No 157
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.91 E-value=0.063 Score=54.37 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 56 ESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 56 ~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
+|+.||...+..+ +..|+=-|.-+||||||||+.+..++.+|.....
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ee 64 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDFEE 64 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHhHH
Confidence 4888998777655 3678888999999999999999999999877643
No 158
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.87 E-value=0.078 Score=53.12 Aligned_cols=92 Identities=15% Similarity=0.014 Sum_probs=59.8
Q ss_pred CCCCHH-HHHHHHHcCCCCC-------cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 39 LRLHPL-LMKSIYKLGFKES-------TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 39 l~L~~~-Ll~~L~~~g~~~p-------T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
.++.++ |..+|.+.-=..+ -+=|-+.|.. -.+.-+||++..|||||.+.|--+.-.++..+
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~--ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--------- 255 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF--EKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--------- 255 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc--cCCCeEEEecCCCCCchhHHHHHHHHHHhccc---------
Confidence 445554 4456665433322 2334455542 44678899999999999877655544444432
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
.....++ +|||.|.|-++.-|.+++-.|+..
T Consensus 256 -------~~l~~k~-vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 256 -------GPLQAKP-VLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred -------cccccCc-eEEEcCcHHHHHHHHHhchhhccC
Confidence 1111222 899999999999999999998764
No 159
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.86 E-value=0.093 Score=54.20 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..++|-|.+|+-. ....++|.|..|||||.+.. --+.++.... ....-+.|+|+.|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~-~Ria~Li~~~------------------~v~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLT-HRIAWLLSVE------------------NASPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHH-HHHHHHHHcC------------------CCCHHHeEeeeccHH
Confidence 4589999999854 35689999999999997643 3333333320 112336899999999
Q ss_pred HHHHHHHHHhhhhc
Q 042526 135 LALQVLMVASPSLK 148 (284)
Q Consensus 135 La~Qi~~~~~~l~~ 148 (284)
.|..+...+..+..
T Consensus 61 AA~em~~Rl~~~~~ 74 (715)
T TIGR01075 61 AAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888765
No 160
>COG4889 Predicted helicase [General function prediction only]
Probab=94.83 E-value=0.071 Score=55.50 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=60.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-----CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR-----KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G-----~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
.|+.+.- .++..+|.-..=..|.|+|+.||... .+| |.=++.| .|+|||++.| -+.+.+.
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a-~~~F~~n~RGkLIMA-cGTGKTfTsL-kisEala----------- 205 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAA-KEGFSDNDRGKLIMA-CGTGKTFTSL-KISEALA----------- 205 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHH-HhhcccccCCcEEEe-cCCCccchHH-HHHHHHh-----------
Confidence 4555432 34455554445568999999999988 443 3445555 5899998765 2222222
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEE
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMA 157 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~ 157 (284)
..+.|+|+|+..|..|..+.+..=. .+.++...+
T Consensus 206 -------------~~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aV 239 (1518)
T COG4889 206 -------------AARILFLVPSISLLSQTLREWTAQK-ELDFRASAV 239 (1518)
T ss_pred -------------hhheEeecchHHHHHHHHHHHhhcc-CccceeEEE
Confidence 2469999999999999988876432 245544333
No 161
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.82 E-value=0.047 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..+.-+++++|||||||... -.++..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 35678999999999999543 4455444
No 162
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.80 E-value=0.08 Score=54.64 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHH---cCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA---HQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|...|..||..+. ..|+ -++++-.||||||.+. +.++.+|++.. ..-++|+|+-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~--------------------~~KRVLFLaD 223 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG--------------------WVKRVLFLAD 223 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc--------------------hhheeeEEec
Confidence 57789999997662 3333 3777777999999776 57888887753 2347999999
Q ss_pred CHHHHHHHHHHHhhhhcC
Q 042526 132 TRELALQVLMVASPSLKS 149 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~ 149 (284)
.+.|+.|.+..+..+...
T Consensus 224 R~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 224 RNALVDQAYGAFEDFLPF 241 (875)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 999999999988887664
No 163
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.73 E-value=0.068 Score=58.51 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
.|+-|..||- ..|++++|.|.-|||||.+..--++..+... ..--+.|||+-|+.-|
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~aa 58 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAAA 58 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHHH
Confidence 5899999995 5699999999999999977665555544321 0112589999999999
Q ss_pred HHHHHHHhh
Q 042526 137 LQVLMVASP 145 (284)
Q Consensus 137 ~Qi~~~~~~ 145 (284)
..+...+..
T Consensus 59 ~e~~~ri~~ 67 (1232)
T TIGR02785 59 REMKERIEE 67 (1232)
T ss_pred HHHHHHHHH
Confidence 776665554
No 164
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.63 E-value=0.086 Score=54.53 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..++|-|.+|+-.. ...++|.|..|||||.+..-=+ .++.... ....-+.|+|+.|+.
T Consensus 8 ~~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~vl~~Ri-a~Li~~~------------------~v~p~~IL~lTFT~k 65 (721)
T PRK11773 8 DSLNDKQREAVAAP---LGNMLVLAGAGSGKTRVLVHRI-AWLMQVE------------------NASPYSIMAVTFTNK 65 (721)
T ss_pred HhcCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHH-HHHHHcC------------------CCChhHeEeeeccHH
Confidence 35899999998543 4589999999999996653332 2333210 112236899999999
Q ss_pred HHHHHHHHHhhhhc
Q 042526 135 LALQVLMVASPSLK 148 (284)
Q Consensus 135 La~Qi~~~~~~l~~ 148 (284)
.|..+...+..+..
T Consensus 66 AA~Em~~Rl~~~~~ 79 (721)
T PRK11773 66 AAAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887764
No 165
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.60 E-value=0.059 Score=50.17 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=33.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
+..+++.|.+-+..++..+++++++++|||||| +++.+++..+-
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip 168 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIP 168 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCC
Confidence 456778887777666688999999999999999 55556555443
No 166
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=94.49 E-value=0.15 Score=54.32 Aligned_cols=68 Identities=25% Similarity=0.168 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHc-CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 56 ESTSILKARIPALAH-QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 56 ~pT~iQ~~aip~il~-~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
.|.|+|..+.-.++. ....+++.-..|-|||+-.++-+-..+... ..-++|||||+ .
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---------------------~~~rvLIVvP~-s 209 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---------------------RAERVLILVPE-T 209 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---------------------CCCcEEEEcCH-H
Confidence 489999998876522 234689999999999987755443332221 22369999998 8
Q ss_pred HHHHHHHHHhh
Q 042526 135 LALQVLMVASP 145 (284)
Q Consensus 135 La~Qi~~~~~~ 145 (284)
|..|...++.+
T Consensus 210 L~~QW~~El~~ 220 (956)
T PRK04914 210 LQHQWLVEMLR 220 (956)
T ss_pred HHHHHHHHHHH
Confidence 99999888854
No 167
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=94.47 E-value=0.027 Score=55.65 Aligned_cols=97 Identities=21% Similarity=0.197 Sum_probs=58.9
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCC
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNS 151 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~ 151 (284)
.+=++-++||-||||. -+|+++.... .+++--|.|-||+.|++.++.+ |
T Consensus 191 RkIi~H~GPTNSGKTy----~ALqrl~~ak-----------------------sGvycGPLrLLA~EV~~r~na~----g 239 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTY----RALQRLKSAK-----------------------SGVYCGPLRLLAHEVYDRLNAL----G 239 (700)
T ss_pred heEEEEeCCCCCchhH----HHHHHHhhhc-----------------------cceecchHHHHHHHHHHHhhhc----C
Confidence 3345667899999994 4566666542 3778889999999999999875 6
Q ss_pred ceeEEEeCCCcchHHHHHhcCC-CcccccccCCc-cccccccCCCCCCcccc
Q 042526 152 LTLAMAAGSPLLTSEHSNRRKP-NKRKRTRKGGE-DEKLDSLKWNPLSQPKT 201 (284)
Q Consensus 152 i~v~~~~G~~~~~q~~~l~~~~-~i~v~~~~~~~-~d~l~~lv~dEAd~m~~ 201 (284)
+.|-+++|......... ..+ ..+-++.-+.. -.....-|+||..||.|
T Consensus 240 ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~D 289 (700)
T KOG0953|consen 240 IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRD 289 (700)
T ss_pred CCccccccceeeecCCC--CCcccceEEEEEEeecCCceEEEEehhHHhhcC
Confidence 66777777643321110 111 11222222222 12344567788777665
No 168
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.5 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=17.4
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 042526 70 HQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafl 90 (284)
..|..+++.+|||+|||....
T Consensus 135 ~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 347789999999999996654
No 169
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.20 E-value=0.086 Score=44.98 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
..+.++++.+++|+|||... ..+...+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa-~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLA-VAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHH-HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHH-HHHHHHhcc
Confidence 66899999999999999543 344444443
No 170
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.15 E-value=0.29 Score=52.33 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCc-EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 52 LGFKESTSILKARIPALAHQRKD-VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~d-viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.|+ .+++-|..|+..+ +.+++ +++++..|||||.. +-.+..+... .+..++.++
T Consensus 343 ~g~-~Ls~eQr~Av~~i-l~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~---------------------~G~~V~~~A 397 (988)
T PRK13889 343 RGL-VLSGEQADALAHV-TDGRDLGVVVGYAGTGKSAM--LGVAREAWEA---------------------AGYEVRGAA 397 (988)
T ss_pred cCC-CCCHHHHHHHHHH-hcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------------------cCCeEEEec
Confidence 454 4899999999988 66554 68999999999964 3333333332 256789999
Q ss_pred cCHHHHHHHH
Q 042526 131 PTRELALQVL 140 (284)
Q Consensus 131 PTReLa~Qi~ 140 (284)
||---|..+.
T Consensus 398 pTGkAA~~L~ 407 (988)
T PRK13889 398 LSGIAAENLE 407 (988)
T ss_pred CcHHHHHHHh
Confidence 9987766554
No 171
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.97 E-value=0.047 Score=51.45 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=37.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
-++|.+.+|||||+..+ -++..+.. ...+..+++|+++..|...++..+..-.
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~--------------------~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQN--------------------SEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhc--------------------cccCCceEEEEecchHHHHHHHHHhhhc
Confidence 37899999999996543 23322211 1135678999999999998888876543
No 172
>PRK13764 ATPase; Provisional
Probab=93.89 E-value=0.11 Score=52.48 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=21.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
..+.+++++++|||||| +|+-.++..+.
T Consensus 255 ~~~~~ILIsG~TGSGKT-Tll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKS-TFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 44678999999999999 45556666553
No 173
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.88 E-value=0.21 Score=51.69 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..++|-|..|+-.. ...++|.|..|||||.+..-=+. ++.... ....-+.|+|+-|+.
T Consensus 3 ~~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~~l~~ria-~Li~~~------------------~i~P~~IL~lTFT~k 60 (726)
T TIGR01073 3 AHLNPEQREAVKTT---EGPLLIMAGAGSGKTRVLTHRIA-HLIAEK------------------NVAPWNILAITFTNK 60 (726)
T ss_pred cccCHHHHHHHhCC---CCCEEEEeCCCCCHHHHHHHHHH-HHHHcC------------------CCCHHHeeeeeccHH
Confidence 45889999998643 46899999999999966544333 333210 011235899999999
Q ss_pred HHHHHHHHHhhhhc
Q 042526 135 LALQVLMVASPSLK 148 (284)
Q Consensus 135 La~Qi~~~~~~l~~ 148 (284)
-|..+...+..+..
T Consensus 61 AA~em~~Rl~~~~~ 74 (726)
T TIGR01073 61 AAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHhc
Confidence 99988888877654
No 174
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.68 E-value=0.048 Score=53.18 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=38.0
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
.++++.|+||||||.+|++|.|- .. .+ .+||.=|--||+......++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~---------------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY---------------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc---------------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999999999763 21 12 4788889999988777766654
No 175
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.66 E-value=0.057 Score=51.01 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHHhHHHHHHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTlafllPil~~ 96 (284)
.+..++..+.+++++++|||||| +++-.++..
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKT-Tll~aLl~~ 185 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKT-TMSKTLISA 185 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHH-HHHHHHHcc
Confidence 33333477999999999999999 444444443
No 176
>PRK05973 replicative DNA helicase; Provisional
Probab=93.54 E-value=0.17 Score=45.30 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHcCCCC----------CcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 39 LRLHPLLMKSIYKLGFKE----------STSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 39 l~L~~~Ll~~L~~~g~~~----------pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+.||..|=+.-.+.||.. +||... .+.-+ ..|.-+++.|++|+|||.-
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl-~~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQL-KPGDLVLLGARPGHGKTLL 80 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCC-CCCCEEEEEeCCCCCHHHH
Confidence 345555555555567764 444322 33344 6788899999999999943
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=93.50 E-value=0.033 Score=58.56 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
....|+|.+.+-.++....++++-+|||||||++|-+.+...+.. ..+-++++++|-..
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---------------------~p~~kvvyIap~ka 984 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---------------------YPGSKVVYIAPDKA 984 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---------------------CCCccEEEEcCCch
Confidence 355677877776655557788999999999999999888754433 24578999999999
Q ss_pred HHHHHHHHHhhhhcCCCceeEEEeCCCcch
Q 042526 135 LALQVLMVASPSLKSNSLTLAMAAGSPLLT 164 (284)
Q Consensus 135 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~ 164 (284)
|+..-.+.+.......|+++.-+.|.....
T Consensus 985 lvker~~Dw~~r~~~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 985 LVKERSDDWSKRDELPGIKVIELTGDVTPD 1014 (1230)
T ss_pred hhcccccchhhhcccCCceeEeccCccCCC
Confidence 998888887766555588887777775443
No 178
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.44 E-value=0.44 Score=50.16 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=52.8
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
+.+..-....+.|.+... -+..+..-|++|+-.++....-.++.+=+|||||...+ .|-+++-.
T Consensus 648 P~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~--~LIkiL~~---------- 711 (1100)
T KOG1805|consen 648 PKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS--LLIKILVA---------- 711 (1100)
T ss_pred chhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH--HHHHHHHH----------
Confidence 333333334455665553 23467789999999884445556889999999996543 22233332
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHh
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~ 144 (284)
.+-++|+.+-|..-+.-|.--+.
T Consensus 712 -----------~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 712 -----------LGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred -----------cCCeEEEEehhhHHHHHHHHHHh
Confidence 24567777777665555544444
No 179
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.25 E-value=0.035 Score=52.90 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=36.8
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
++++.|+||||||.+|++|-+-.. .-.+||+=|--|+........+.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999999976421 124788889999998777666543
No 180
>PRK06921 hypothetical protein; Provisional
Probab=93.23 E-value=0.53 Score=42.77 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.+..+++.+++|+|||... ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 4778999999999999432 34444443
No 181
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=93.21 E-value=0.22 Score=52.42 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|-..|...+..+ =.+..+++.|||-+|||++- .-+++.+++.. ..=-+|+++||..|
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfis-fY~iEKVLRes--------------------D~~VVIyvaPtKaL 568 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFIS-FYAIEKVLRES--------------------DSDVVIYVAPTKAL 568 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceecc-HHHHHHHHhhc--------------------CCCEEEEecchHHH
Confidence 4778899999887 88999999999999999642 34456666643 22347889999999
Q ss_pred HHHHHHHHh
Q 042526 136 ALQVLMVAS 144 (284)
Q Consensus 136 a~Qi~~~~~ 144 (284)
+.|+...+.
T Consensus 569 VnQvsa~Vy 577 (1330)
T KOG0949|consen 569 VNQVSANVY 577 (1330)
T ss_pred hhhhhHHHH
Confidence 999866554
No 182
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.13 E-value=0.21 Score=47.06 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..+..+++++|||||||... -.++..+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 34668999999999999543 3444443
No 183
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.05 E-value=0.13 Score=48.40 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.+..++..+.+++++++|||||| +++-.++..+
T Consensus 152 ~L~~~v~~~~nili~G~tgSGKT-Tll~aL~~~i 184 (332)
T PRK13900 152 FLEHAVISKKNIIISGGTSTGKT-TFTNAALREI 184 (332)
T ss_pred HHHHHHHcCCcEEEECCCCCCHH-HHHHHHHhhC
Confidence 33433477999999999999999 5555555544
No 184
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.96 E-value=0.18 Score=47.36 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=30.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
..|..+++-|+..+..++..+.++++++-||||||.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT 188 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT 188 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH
Confidence 357889999999999885555699999999999993
No 185
>PRK10436 hypothetical protein; Provisional
Probab=92.89 E-value=0.18 Score=49.53 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.+.-+++++|||||||.+. ..+|..+
T Consensus 217 ~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3457899999999999654 4455554
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.79 E-value=0.36 Score=45.36 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=30.4
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~ 141 (284)
.+.++++.++||+|||+ .+..+...+... +..+ +..+..+|..++..
T Consensus 182 ~~~~Lll~G~~GtGKTh-La~aIa~~l~~~----------------------g~~V-~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF-LSNCIAKELLDR----------------------GKSV-IYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHH-HHHHHHHHHHHC----------------------CCeE-EEEEHHHHHHHHHH
Confidence 46899999999999995 333444444331 3334 45566777777654
No 187
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.74 E-value=0.26 Score=44.48 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=45.5
Q ss_pred cCCCCCcHHHHHHHHHH------HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeE
Q 042526 52 LGFKESTSILKARIPAL------AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR 125 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~i------l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (284)
+.|.....++..++-.+ +.++.++++.+++|+|||.-. .++...+.. .+.
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~----------------------~g~- 134 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLA-IAIGNELLK----------------------AGI- 134 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHHH----------------------cCC-
Confidence 34445555555544433 246889999999999999433 334444442 133
Q ss_pred EEEEecCHHHHHHHHHHHhh
Q 042526 126 ALIINPTRELALQVLMVASP 145 (284)
Q Consensus 126 aLIL~PTReLa~Qi~~~~~~ 145 (284)
.++++++.+|+.++...+..
T Consensus 135 sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 135 SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred eEEEEEHHHHHHHHHHHHhc
Confidence 56677999999999887664
No 188
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.68 E-value=0.26 Score=44.75 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHc-CCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 48 SIYKLGFKESTSILKARIPALAH-QRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 48 ~L~~~g~~~pT~iQ~~aip~il~-~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.|..+|| ++-|.+.|-.++. .+.-+++.++||||||. ++-.++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhh
Confidence 3555564 2445555544423 34468999999999994 444555554
No 189
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.66 E-value=0.18 Score=47.56 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 44 LLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 44 ~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
.-+..|.+.|+ +++-+...+..++..+.+++++++||||||.
T Consensus 152 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 152 FTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred CCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 34555666666 4456666666665778899999999999984
No 190
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.65 E-value=0.16 Score=43.39 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
..++-|...+...+..|..+++.++||||||..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3566677777767688999999999999999543
No 191
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.64 E-value=0.078 Score=53.72 Aligned_cols=49 Identities=18% Similarity=0.036 Sum_probs=39.0
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
..+++.||||||||.+|++|-|... .-.+||+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4789999999999999999987542 123788889999998777766653
No 192
>PRK08181 transposase; Validated
Probab=92.59 E-value=0.38 Score=43.89 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..+.++++.+|+|+|||.
T Consensus 104 ~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSH 121 (269)
T ss_pred hcCceEEEEecCCCcHHH
Confidence 578899999999999994
No 193
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=92.55 E-value=1.2 Score=39.60 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=67.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc--CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAH--QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~--~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
..|.-+..|.+|+=.+.. ++ ...+.|......++. +|.|.+.+--.|.||| +-++|++..++.+.
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKT-sVI~Pmla~~LAdg---------- 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKT-SVIVPMLALALADG---------- 69 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCcc-chHHHHHHHHHcCC----------
Confidence 357777778888766653 34 367889988877732 3789999999999999 66789998777642
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh-hhcCCCcee
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASP-SLKSNSLTL 154 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~-l~~~~~i~v 154 (284)
.-.+.++|| +.|..|....++. |+.-++..|
T Consensus 70 -----------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i 101 (229)
T PF12340_consen 70 -----------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRI 101 (229)
T ss_pred -----------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCee
Confidence 234555555 5588998888875 444334444
No 194
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.39 E-value=0.2 Score=50.49 Aligned_cols=46 Identities=37% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHc-CCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 48 SIYKLGFKESTSILKARIPALAH-QRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 48 ~L~~~g~~~pT~iQ~~aip~il~-~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.|.++||. +-|...|-.++. ...-+++++|||||||.+. ..++..+
T Consensus 294 ~l~~lg~~---~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGFE---PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCCC---HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 35566653 445555554423 2346789999999999653 4555554
No 195
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.30 E-value=0.13 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..+.+++++++|||||| +++-.++..+
T Consensus 125 ~~~~~ili~G~tGSGKT-T~l~all~~i 151 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKT-TLLNALLEEI 151 (270)
T ss_dssp HTTEEEEEEESTTSSHH-HHHHHHHHHC
T ss_pred ccceEEEEECCCccccc-hHHHHHhhhc
Confidence 56889999999999999 4445555443
No 196
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.29 E-value=1 Score=48.66 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 042526 40 RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119 (284)
Q Consensus 40 ~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (284)
++++..+.+....++ .+|+-|..|+..+...++-++++++.|||||.. +-.+..+...
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------------------- 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------------------- 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH-------------------
Confidence 455666655444444 589999999998744466789999999999943 3333333332
Q ss_pred CCCCeEEEEEecCHHHHHHHHH
Q 042526 120 PKGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 120 ~~~~~~aLIL~PTReLa~Qi~~ 141 (284)
.+..++.++||---|..+..
T Consensus 424 --~G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 424 --AGYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred --cCCeEEEEcCcHHHHHHHHH
Confidence 35678899999777766544
No 197
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.15 E-value=0.61 Score=47.65 Aligned_cols=109 Identities=22% Similarity=0.148 Sum_probs=67.0
Q ss_pred CcHHHHHHHHHHHc----CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 57 STSILKARIPALAH----QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 57 pT~iQ~~aip~il~----~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
+-|.|.+++.-++. .+..-|+.-.-|=|||++.+--++..=.....+ ........ ..|||||-
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~------------~~~~~~a~-~TLII~Pa 392 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAR------------EKKGESAS-KTLIICPA 392 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhh------------cccccccC-CeEEeCcH
Confidence 45788887765421 234456677789999976543333321111100 01111111 38999996
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~ 179 (284)
+ |.+|++.++.+-....-++|.+++|.........-.+..|+++.+
T Consensus 393 S-li~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTT 438 (901)
T KOG4439|consen 393 S-LIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITT 438 (901)
T ss_pred H-HHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEe
Confidence 5 667888888776666678999999988655555666677776655
No 198
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.89 E-value=0.11 Score=53.29 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=37.6
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
.++++.||||||||.+|++|-|-.. .-.+||+=|--|+........+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999986532 11478888999998877666654
No 199
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.57 E-value=1.4 Score=40.30 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.++.+++.+|||+|||.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999554
No 200
>PF12846 AAA_10: AAA-like domain
Probab=91.49 E-value=0.54 Score=42.09 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=30.8
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
+++++.|+||||||.+.. .++..+... ++.++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------------------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR----------------------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc----------------------CCCEEEEcCCchHHH
Confidence 578999999999996555 555555442 567788878777666
No 201
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.47 E-value=0.37 Score=40.40 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=29.6
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
+++.+++|||||. +++-++..... .+..+++++ +-+-+.++...+..+
T Consensus 2 ~li~G~~G~GKT~-l~~~~~~~~~~----------------------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTT-FALQFLYAGLA----------------------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHH-HHHHHHHHHHH----------------------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 6889999999994 33333222222 244566664 556677777777665
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.40 E-value=0.39 Score=45.56 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHH-----cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 57 STSILKARIPALA-----HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 57 pT~iQ~~aip~il-----~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+++=|+.++..++ ..+..+++.++-||||| |++=.|...... .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc---------------------ccceEEEecc
Confidence 4566777766551 56889999999999999 555444443332 2456899999
Q ss_pred CHHHHHHH
Q 042526 132 TRELALQV 139 (284)
Q Consensus 132 TReLa~Qi 139 (284)
|---|..|
T Consensus 59 tg~AA~~i 66 (364)
T PF05970_consen 59 TGIAAFNI 66 (364)
T ss_pred hHHHHHhc
Confidence 98877776
No 203
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.96 E-value=0.36 Score=47.75 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=27.3
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCC-cEEEEccCCCCchHHhHHHHHHHH
Q 042526 48 SIYKLGFKESTSILKARIPALAHQRK-DVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 48 ~L~~~g~~~pT~iQ~~aip~il~~G~-dviv~A~TGSGKTlafllPil~~l 97 (284)
.|..+||. +-|.+.|-.++...+ -+++++|||||||.+. -.++..+
T Consensus 220 ~l~~Lg~~---~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGMS---PELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCCC---HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 34555652 445555544433344 4689999999999543 3445544
No 204
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.56 E-value=0.18 Score=51.73 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=37.2
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
.++++.||||||||.+|++|-|-... -.+||+=|--||........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~-------------------------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP-------------------------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC-------------------------CCEEEEeCcchHHHHHHHHHHh
Confidence 58999999999999999999875321 1377888889987766665544
No 205
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.53 E-value=0.29 Score=49.89 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe--cCHHH
Q 042526 58 TSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN--PTREL 135 (284)
Q Consensus 58 T~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~--PTReL 135 (284)
+.++.+.+..| ...+-||+.+.||||||.- +-++|+.. ....+ .+|-| |-|.-
T Consensus 358 f~~R~~ll~~i-r~n~vvvivgETGSGKTTQ----l~QyL~ed-----------------GY~~~---GmIGcTQPRRvA 412 (1042)
T KOG0924|consen 358 FACRDQLLSVI-RENQVVVIVGETGSGKTTQ----LAQYLYED-----------------GYADN---GMIGCTQPRRVA 412 (1042)
T ss_pred HHHHHHHHHHH-hhCcEEEEEecCCCCchhh----hHHHHHhc-----------------ccccC---CeeeecCchHHH
Confidence 44555555555 6677889999999999943 33455553 12222 34444 77777
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcc-----hHHHHHhc--CCCcccccccCCccccccccCCCCCCc-----ccccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLL-----TSEHSNRR--KPNKRKRTRKGGEDEKLDSLKWNPLSQ-----PKTTT 203 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~-----~q~~~l~~--~~~i~v~~~~~~~~d~l~~lv~dEAd~-----m~~~g 203 (284)
|..++..+ +..++..+...+|=.+. .+.-.++. ..-++...+.-..|++-..+++|||-. ..-||
T Consensus 413 AiSVAkrV---a~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfG 489 (1042)
T KOG0924|consen 413 AISVAKRV---AEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFG 489 (1042)
T ss_pred HHHHHHHH---HHHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHH
Confidence 77665544 33333222222221110 00000000 000111223445677778888999876 45566
Q ss_pred cccch
Q 042526 204 LLPSS 208 (284)
Q Consensus 204 flp~~ 208 (284)
||-.+
T Consensus 490 llk~~ 494 (1042)
T KOG0924|consen 490 LLKKV 494 (1042)
T ss_pred HHHHH
Confidence 66555
No 206
>PRK12377 putative replication protein; Provisional
Probab=90.50 E-value=0.91 Score=40.89 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~ 143 (284)
..++++.+++|+|||. .+..+...+... +.. ++.++..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKTh-La~AIa~~l~~~----------------------g~~-v~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNH-LAAAIGNRLLAK----------------------GRS-VIVVTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHHHHc----------------------CCC-eEEEEHHHHHHHHHHHH
Confidence 4689999999999993 223444444331 223 35556778888776543
No 207
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.23 E-value=0.19 Score=45.20 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHH
Q 042526 44 LLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 44 ~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil 94 (284)
+++++|..-|+.+..+.--..+--+ ..|.-+++.|++|+|||. |++-++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~-~~g~~~~i~g~~G~GKT~-l~~~~~ 51 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGL-RKGELIILTAGTGVGKTT-FLREYA 51 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEE-cCCcEEEEEcCCCCCHHH-HHHHHH
Confidence 4555665444443333222233334 678899999999999994 433333
No 208
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=90.21 E-value=0.24 Score=51.96 Aligned_cols=20 Identities=45% Similarity=0.449 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
....-+|+.|+||||||...
T Consensus 63 ~~~~vvii~getGsGKTTql 82 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQL 82 (845)
T ss_pred HhCCEEEEeCCCCCChHHHH
Confidence 66778999999999999553
No 209
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.19 E-value=0.73 Score=40.49 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=21.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
..|.-+++.|+||+||| +|++-++..+..
T Consensus 11 ~~G~l~lI~G~~G~GKT-~~~~~~~~~~~~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKT-AFALNIAENIAK 39 (242)
T ss_pred CCCeEEEEEeCCCCCHH-HHHHHHHHHHHH
Confidence 56888999999999999 555555544433
No 210
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.92 E-value=0.66 Score=45.74 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcCCC-cEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 49 IYKLGFKESTSILKARIPALAHQRK-DVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 49 L~~~g~~~pT~iQ~~aip~il~~G~-dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
|.++||. +.|...+-.++...+ =+++.+|||||||.+ +..+|+.+..
T Consensus 237 l~~Lg~~---~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 237 LEKLGMS---PFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred HHHhCCC---HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4444543 666666666534433 367889999999955 4566665544
No 211
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.84 E-value=0.41 Score=42.99 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l 97 (284)
.+++.|++||||| +|++-+|..+
T Consensus 15 r~viIG~sGSGKT-~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHHhh
Confidence 7899999999999 6666666443
No 212
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=89.63 E-value=0.54 Score=40.10 Aligned_cols=15 Identities=27% Similarity=-0.013 Sum_probs=9.2
Q ss_pred CcchHHHHHhcCCCc
Q 042526 161 PLLTSEHSNRRKPNK 175 (284)
Q Consensus 161 ~~~~q~~~l~~~~~i 175 (284)
......+.|..+|.|
T Consensus 60 ~d~ssLrslIekPPi 74 (178)
T PF10278_consen 60 QDNSSLRSLIEKPPI 74 (178)
T ss_pred cCcchHHHHhhCCCC
Confidence 344445677777777
No 213
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=89.55 E-value=0.57 Score=48.78 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=33.8
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~ 141 (284)
-++=|.-.||||||.+|+=-|...... ..-...||+|||.+.-.-+..
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~---------------------YG~~KFIivVPs~AIkeGv~~ 122 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK---------------------YGLFKFIIVVPSLAIKEGVFL 122 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH---------------------hCceeEEEEeccHHHHhhhHH
Confidence 467778899999999998666543222 245678999999776554433
No 214
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.32 E-value=0.2 Score=51.11 Aligned_cols=46 Identities=24% Similarity=0.176 Sum_probs=35.4
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~ 143 (284)
..+++.||||||||.+|++|.|-.. +-.+||+=|-.|+..-+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------------------------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------------------------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------------------------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987521 224788889999976555443
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.31 E-value=1.4 Score=39.69 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.6
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
..+++.+++|+|||... ..+...+.
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~ 124 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELL 124 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 47999999999999433 34444443
No 216
>PRK06526 transposase; Provisional
Probab=89.25 E-value=0.5 Score=42.66 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..+.++++.+|+|+|||...
T Consensus 96 ~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred hcCceEEEEeCCCCchHHHH
Confidence 56789999999999999543
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.25 E-value=0.26 Score=37.94 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
+..+++.+|+|||||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567999999999999443
No 218
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.19 E-value=0.26 Score=50.40 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
...+++.|+||||||.++++|-+-.. +-.++|+=|-.|++..+....++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~-------------------------~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW-------------------------GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC-------------------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 35789999999999999999975311 12367777999998766665544
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.18 E-value=1.5 Score=40.67 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.++.+++.+++|+|||.
T Consensus 155 ~~~gl~L~G~~G~GKTh 171 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSY 171 (306)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 46789999999999993
No 220
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.18 E-value=0.25 Score=50.25 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=37.5
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
..+++.||||||||.++++|-+-.. +-.++|+=|..|++..+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999964321 113788889999987777655544
No 221
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.17 E-value=0.45 Score=41.06 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=15.8
Q ss_pred EEEEccCCCCchHHhHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l 97 (284)
+++++|||||||... -.++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 688999999999553 4444444
No 222
>PRK08116 hypothetical protein; Validated
Probab=89.09 E-value=1.6 Score=39.59 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVA 143 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~ 143 (284)
+..+++.+++|||||... ..+.+.+... +.. ++..+..+|...+...+
T Consensus 114 ~~gl~l~G~~GtGKThLa-~aia~~l~~~----------------------~~~-v~~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLA-ACIANELIEK----------------------GVP-VIFVNFPQLLNRIKSTY 161 (268)
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHHHc----------------------CCe-EEEEEHHHHHHHHHHHH
Confidence 345999999999999433 3455544432 222 44556677777775543
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.66 E-value=0.9 Score=35.27 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
++.+++.+++|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 7889999999999993
No 224
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.25 Score=46.22 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
++-.|+++.+|||||||+
T Consensus 95 L~KSNILLiGPTGsGKTl 112 (408)
T COG1219 95 LSKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeeccEEEECCCCCcHHH
Confidence 345689999999999995
No 225
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=1.3 Score=41.74 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.8
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
.-.|=+++++|+||||| +.+=.+.|++.-
T Consensus 175 t~NRliLlhGPPGTGKT-SLCKaLaQkLSI 203 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKT-SLCKALAQKLSI 203 (423)
T ss_pred eeeeEEEEeCCCCCChh-HHHHHHHHhhee
Confidence 33567899999999999 666666666643
No 226
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.42 E-value=0.65 Score=44.47 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=32.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~ 141 (284)
...+++++.+.||||||. ++-++|..+... +-++||.=|.-++....++
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~----------------------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRAR----------------------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT----------------------T-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHc----------------------CCEEEEEECCchHHHHhcC
Confidence 567899999999999996 445666665443 4468888888887665544
No 227
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=88.34 E-value=2.3 Score=45.64 Aligned_cols=91 Identities=18% Similarity=0.002 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHc-CCC------CCcHHHHHHHHHHHc-------------CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 39 LRLHPLLMKSIYKL-GFK------ESTSILKARIPALAH-------------QRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 39 l~L~~~Ll~~L~~~-g~~------~pT~iQ~~aip~il~-------------~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
+.=++.|+.-|..+ =|. ..-++|.++-+.++. .++.-+|.--+|||||++-+..+- .+.
T Consensus 220 ~l~~~~ll~~i~~f~vf~~~~~~~~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~-~l~ 298 (962)
T COG0610 220 FLAPERLLDIIRNFIVFDKSDDGLVKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLAR-LLL 298 (962)
T ss_pred HhCHHHHHHHHHheEEEeecCCcccchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHH-HHH
Confidence 34456677777552 122 344566555553311 134567777799999987543221 111
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC
Q 042526 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150 (284)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~ 150 (284)
.. ...|.++|||--++|-.|+.+.+..+....
T Consensus 299 ~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~ 330 (962)
T COG0610 299 EL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA 330 (962)
T ss_pred hc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhh
Confidence 11 367899999999999999999999987754
No 228
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=88.25 E-value=0.52 Score=45.48 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=33.3
Q ss_pred HHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHH
Q 042526 65 IPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139 (284)
Q Consensus 65 ip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi 139 (284)
||.- ...+++++.|+||||||.. +..++..+... +-+++|+=|..++....
T Consensus 36 ~~~~-~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----------------------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKD-AEEAHTMIIGTTGTGKTTQ-IRELLASIRAR----------------------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcc-hhhccEEEEcCCCCCHHHH-HHHHHHHHHhc----------------------CCCEEEEeCCcchhHhh
Confidence 4544 5578999999999999964 44444444332 33577777777765443
No 229
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.12 E-value=1 Score=39.96 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=34.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
..|.-+++.+++|||||.-.+--+...+ . .+-.+++++ +-+-+.|+.+.+..+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------------------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------------------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------------------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4578999999999999953322222222 1 234567666 5666777777666554
No 230
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=87.78 E-value=0.78 Score=47.74 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=37.0
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
=.++.||.|||||.+..-+ |..... ...-.+|+|+.-|.|+.++...++.-
T Consensus 51 V~vVRSpMGTGKTtaLi~w-Lk~~l~---------------------~~~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRW-LKDALK---------------------NPDKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred eEEEECCCCCCcHHHHHHH-HHHhcc---------------------CCCCeEEEEEhHHHHHHHHHHHHhhc
Confidence 4578999999999666433 322211 13457999999999999999988743
No 231
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.64 E-value=0.55 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTla 88 (284)
.+..++..++.+++++|+|||||..
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHH
Confidence 3344457899999999999999953
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=87.57 E-value=1.3 Score=40.09 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.++++.+|+|+|||..
T Consensus 100 ~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hcCCeEEEEeCCCCCHHHH
Confidence 6789999999999999943
No 233
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.53 E-value=1.3 Score=38.72 Aligned_cols=55 Identities=15% Similarity=-0.029 Sum_probs=32.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
-.|.-+++.+++|||||.-.+--+.+.+... +-.+++++ +-+-..++.+.++.+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 4578999999999999943322222222220 22355555 5555677777777664
No 234
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=0.4 Score=48.34 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=47.5
Q ss_pred CCCccccccccccccCccccCcccCC-CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 15 GPDDAQEELVNEAEISTEFDAWNELR-LHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~F~~l~-L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
...+.....+.+...|.+-.+|+++| ++..+..-+.- .-+.+|-.++..-+ .--+.|++|+|+|+|||.
T Consensus 168 ~a~~~~r~~~~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~ 238 (802)
T KOG0733|consen 168 LARGILRQFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTS 238 (802)
T ss_pred hcchhhhhhhcccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHH
Confidence 33344455677788888888999996 55544443322 23777877776654 345789999999999994
No 235
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.29 E-value=0.61 Score=43.20 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=17.3
Q ss_pred HcCCCcEEEEccCCCCchHH
Q 042526 69 AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTla 88 (284)
+..|.++++.++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 36789999999999999943
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.08 E-value=0.75 Score=41.53 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|+++++.+++|+|||...
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHH
Confidence 77999999999999999544
No 237
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.66 E-value=2.7 Score=47.30 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHh--HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALAHQ--RKDVIGAAETESGKTRAF--GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlaf--llPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.+|+-|..|+-.+ +. .+-+++++..|||||... ++.++..+.. ..+..++.++|
T Consensus 835 ~Lt~~Qr~Av~~i-Lts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---------------------~~g~~V~glAP 892 (1623)
T PRK14712 835 KLTSGQRAATRMI-LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---------------------SERPRVVGLGP 892 (1623)
T ss_pred ccCHHHHHHHHHH-HhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---------------------ccCceEEEEec
Confidence 6899999999988 54 478999999999999543 1222221111 13467888999
Q ss_pred CHHHHHHHH
Q 042526 132 TRELALQVL 140 (284)
Q Consensus 132 TReLa~Qi~ 140 (284)
|---|..+.
T Consensus 893 TgkAa~~L~ 901 (1623)
T PRK14712 893 THRAVGEMR 901 (1623)
T ss_pred hHHHHHHHH
Confidence 977666553
No 238
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=86.52 E-value=0.74 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=19.9
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRLLEE 100 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~~~ 100 (284)
.++.+|+||||| +|+..+.+.+...
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~~ 29 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSAI 29 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHHh
Confidence 478899999999 8888877766543
No 239
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=86.30 E-value=1.5 Score=38.78 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|+|||..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 5688999999999999944
No 240
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.02 E-value=0.57 Score=46.94 Aligned_cols=72 Identities=10% Similarity=-0.103 Sum_probs=55.5
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 48 SIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 48 ~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
.+..+-.+....+|..+|..+ ..|+++++...|-+||.++|-+..+..+... .....+
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---------------------~~s~~~ 335 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFA-SEGRADGGNEARQAGKGTCPTSGSRKFQTLC---------------------HATNSL 335 (1034)
T ss_pred HHhcccccchhhhhHHHHhhh-hhcccccccchhhcCCccCcccchhhhhhcC---------------------ccccee
Confidence 345566777889999999988 9999999999999999999998877655442 123467
Q ss_pred EEecCHHHHHHHHH
Q 042526 128 IINPTRELALQVLM 141 (284)
Q Consensus 128 IL~PTReLa~Qi~~ 141 (284)
++.||.+|+..-..
T Consensus 336 ~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 336 LPSEMVEHLRNGSK 349 (1034)
T ss_pred cchhHHHHhhccCC
Confidence 77888888765433
No 241
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=85.78 E-value=2.6 Score=45.27 Aligned_cols=89 Identities=21% Similarity=0.081 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHH-------cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 58 TSILKARIPALA-------HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 58 T~iQ~~aip~il-------~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
+..|-.|+..+. ..|--+|-.|.||+|||+|=+ +++.. -.....+++..|-.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-----RImya----------------Lsd~~~g~RfsiAL 468 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-----RAMYA----------------LRDDKQGARFAIAL 468 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-----HHHHH----------------hCCCCCCceEEEEc
Confidence 346766766551 225557778999999997753 22221 11223567888888
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH 167 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~ 167 (284)
-.|.|..|..+.++.-..-..-.+++++|+....+..
T Consensus 469 GLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~ 505 (1110)
T TIGR02562 469 GLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLF 505 (1110)
T ss_pred cccceeccchHHHHHhcCCCccceEEEECHHHHHHHH
Confidence 9999999999999986655455778888886555444
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.76 E-value=3.3 Score=36.66 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+..+++.+|+|+|||.
T Consensus 44 ~~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 44 HSGYIYLWSREGAGRSH 60 (235)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 45689999999999994
No 243
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=85.75 E-value=2.8 Score=48.33 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 55 KESTSILKARIPALAHQ--RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
..+|+-|..|+-.+ +. ++-+++++..|||||... ..++..+.... ...+..++.++||
T Consensus 1018 ~~Lt~~Q~~Ai~~i-l~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~------------------~~~g~~v~glApT 1077 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLI-ISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAF------------------ESEQLQVIGLAPT 1077 (1960)
T ss_pred CCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHH------------------HhcCCeEEEEeCh
Confidence 36899999999998 54 356788999999999443 22222222210 0135678889999
Q ss_pred HHHHHHHH
Q 042526 133 RELALQVL 140 (284)
Q Consensus 133 ReLa~Qi~ 140 (284)
-.-|.++.
T Consensus 1078 ~~Aa~~L~ 1085 (1960)
T TIGR02760 1078 HEAVGELK 1085 (1960)
T ss_pred HHHHHHHH
Confidence 77776553
No 244
>PRK08727 hypothetical protein; Validated
Probab=85.57 E-value=2 Score=38.01 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=13.2
Q ss_pred CcEEEEccCCCCchH
Q 042526 73 KDVIGAAETESGKTR 87 (284)
Q Consensus 73 ~dviv~A~TGSGKTl 87 (284)
..+++.+++|||||.
T Consensus 42 ~~l~l~G~~G~GKTh 56 (233)
T PRK08727 42 DWLYLSGPAGTGKTH 56 (233)
T ss_pred CeEEEECCCCCCHHH
Confidence 459999999999994
No 245
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=85.50 E-value=1.3 Score=45.97 Aligned_cols=108 Identities=19% Similarity=0.058 Sum_probs=65.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
..+-+-|+.-.-|=||| +-.|+.+..|.+.. ..+| -|||||+--| .++++.|.++
T Consensus 416 k~~l~gILADEMGLGKT-iQvIaFlayLkq~g-------------------~~gp-HLVVvPsSTl----eNWlrEf~kw 470 (941)
T KOG0389|consen 416 KKKLNGILADEMGLGKT-IQVIAFLAYLKQIG-------------------NPGP-HLVVVPSSTL----ENWLREFAKW 470 (941)
T ss_pred HccccceehhhccCcch-hHHHHHHHHHHHcC-------------------CCCC-cEEEecchhH----HHHHHHHHHh
Confidence 44566689999999999 45566666665531 2455 4889997766 4455566655
Q ss_pred C-CceeEEEeCCCcch-HHH-HHhcC---CCccccc----------ccCCccccccccCCCCCCccccc
Q 042526 150 N-SLTLAMAAGSPLLT-SEH-SNRRK---PNKRKRT----------RKGGEDEKLDSLKWNPLSQPKTT 202 (284)
Q Consensus 150 ~-~i~v~~~~G~~~~~-q~~-~l~~~---~~i~v~~----------~~~~~~d~l~~lv~dEAd~m~~~ 202 (284)
. .++|..|+|..... +.+ .+.++ .++++++ +...---++.+++|||+-++-++
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc
Confidence 5 68899999985322 222 22222 2333333 11111236888999998875544
No 246
>PRK04328 hypothetical protein; Provisional
Probab=85.50 E-value=1.8 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
-.|.-+++.+++|+|||.
T Consensus 21 p~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSI 38 (249)
T ss_pred cCCcEEEEEcCCCCCHHH
Confidence 357889999999999984
No 247
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=85.12 E-value=0.83 Score=43.43 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.|+-+++.+|+||||| |..+.+.+-|
T Consensus 63 ~aGrgiLi~GppgTGKT-AlA~gIa~eL 89 (450)
T COG1224 63 MAGRGILIVGPPGTGKT-ALAMGIAREL 89 (450)
T ss_pred ccccEEEEECCCCCcHH-HHHHHHHHHh
Confidence 56899999999999999 5555555544
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.06 E-value=4.1 Score=39.17 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHhH
Q 042526 72 RKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafl 90 (284)
++.+++.+|||+|||.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997654
No 249
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.91 E-value=2.9 Score=40.33 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.++-+.+.+|||.|||.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred cCcEEEEECCCCCcHHHHHH
Confidence 37889999999999997654
No 250
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.59 E-value=0.54 Score=45.34 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=35.5
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.|-.+|.+++-.....+.|.+. -+.+|.-++..-+ ...+.+++.+|+|||||+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl----~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI----DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC----CCCceEEEECCCCCCHHHHH
Confidence 4456799997666666666542 3344443333222 34678999999999999643
No 251
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=84.50 E-value=2 Score=46.98 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=38.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLM 141 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~ 141 (284)
-.+.+++|.|..|||||.+...-+|..+.... ...-...|||+.|+.=|..+..
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~ 67 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKE 67 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHH
Confidence 45789999999999999887777766665520 1223468999998755554433
No 252
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.41 E-value=8.1 Score=38.82 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+++.++||+|||...
T Consensus 348 ~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999654
No 253
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=84.36 E-value=2.5 Score=40.30 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=44.3
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH-HHHHHHHHHhhhhcCCCc
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE-LALQVLMVASPSLKSNSL 152 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe-La~Qi~~~~~~l~~~~~i 152 (284)
-.++.+..|||||.+.++-++..+.... .+.++||+-||.. |..-++..+......+++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------------------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------------------KQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------------------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 3578899999999999988887776630 2467899999965 777788888766655444
No 254
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.27 E-value=1.8 Score=39.01 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|+|||.
T Consensus 34 p~gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSL 51 (259)
T ss_pred ECCcEEEEEcCCCCCHHH
Confidence 457889999999999994
No 255
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=84.25 E-value=1.1 Score=37.09 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=13.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..++.+++.+++|+|||. ++--++.++
T Consensus 22 ~~~~~~ll~G~~G~GKT~-ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTS-LLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHH-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHH-HHHHHHHHH
Confidence 346789999999999993 333344433
No 256
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.23 E-value=2.4 Score=43.40 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=38.1
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH--HHHHHHHHHhhhhcC
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE--LALQVLMVASPSLKS 149 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe--La~Qi~~~~~~l~~~ 149 (284)
..++++.|+||+|||..+ ..++...... +..++|+=|-.+ |...++..++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~-~~l~~q~i~~----------------------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLA-ELLITQDIRR----------------------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHHHc----------------------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 467899999999999666 4454444332 345667777754 888888888776543
No 257
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.17 E-value=1.6 Score=38.13 Aligned_cols=19 Identities=26% Similarity=0.072 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|..+++.+++|+|||..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l 36 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIF 36 (229)
T ss_pred cCCeEEEEECCCCCChHHH
Confidence 4588999999999999843
No 258
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.90 E-value=1.4 Score=39.50 Aligned_cols=55 Identities=22% Similarity=0.103 Sum_probs=36.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhc
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~ 148 (284)
-.|+.+++.+++||||| .|++=.+...... +- -++.+.|.|...++...+..+.-
T Consensus 21 p~g~~~lI~G~pGsGKT-~f~~qfl~~~~~~----------------------ge-~vlyvs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKT-IFALQFLYEGARE----------------------GE-PVLYVSTEESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHH-HHHHHHHHHHHhc----------------------CC-cEEEEEecCCHHHHHHHHHHcCC
Confidence 45889999999999999 3433332222221 22 35566788888888888877654
No 259
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=83.75 E-value=2.1 Score=44.44 Aligned_cols=84 Identities=19% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.+.|+|+.++.-+ ..++..=|+.-.-|=|||.- .+..|..|.... . ..-.||||||.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~------------------k-~~~paLIVCP~ 264 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG------------------K-LTKPALIVCPA 264 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc------------------c-ccCceEEEccH
Confidence 3457788776544 24566667788899999932 122222222210 0 01239999997
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPL 162 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~ 162 (284)
- +..|+.+++..+.. .++|.+++|...
T Consensus 265 T-ii~qW~~E~~~w~p--~~rv~ilh~t~s 291 (923)
T KOG0387|consen 265 T-IIHQWMKEFQTWWP--PFRVFILHGTGS 291 (923)
T ss_pred H-HHHHHHHHHHHhCc--ceEEEEEecCCc
Confidence 5 45677777777744 567777777644
No 260
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=83.63 E-value=0.78 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~ 96 (284)
..|+-+++.+|+||||| |..+.+.+.
T Consensus 48 ~aGr~iLiaGppGtGKT-AlA~~ia~e 73 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKT-ALAMAIAKE 73 (398)
T ss_dssp -TT-EEEEEE-TTSSHH-HHHHHHHHH
T ss_pred ccCcEEEEeCCCCCCch-HHHHHHHHH
Confidence 46999999999999999 444555443
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=83.47 E-value=0.67 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=11.6
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
+++-+++.|++|+|||..
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 466789999999999944
No 262
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.27 E-value=7.1 Score=37.95 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.|+.+++.+|||+|||.+.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36788999999999996543
No 263
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=83.11 E-value=0.74 Score=44.95 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=30.2
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|..+|.+++=-...++.|.+. -+.+|--+...- + ..++.+++.+|+|||||+..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g---i-~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG---I-KPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC---C-CCCcEEEEECCCCCCHHHHH
Confidence 446788885333444444432 122222111111 2 45678999999999999654
No 264
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.09 E-value=5.8 Score=45.13 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 56 ESTSILKARIPALAHQ--RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.+|+-|..|+-.+ +. .+-+++++..|+|||... -.++..+... ....+..++.++||-
T Consensus 967 ~Lt~~Q~~Av~~i-l~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l------------------~~~~~~~V~glAPTg 1026 (1747)
T PRK13709 967 GLTSGQRAATRMI-LESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL------------------PESERPRVVGLGPTH 1026 (1747)
T ss_pred CCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh------------------hcccCceEEEECCcH
Confidence 5899999999998 55 467899999999999442 2333222111 011345688899997
Q ss_pred HHHHHHH
Q 042526 134 ELALQVL 140 (284)
Q Consensus 134 eLa~Qi~ 140 (284)
--|..+.
T Consensus 1027 rAAk~L~ 1033 (1747)
T PRK13709 1027 RAVGEMR 1033 (1747)
T ss_pred HHHHHHH
Confidence 6665543
No 265
>PF05729 NACHT: NACHT domain
Probab=83.02 E-value=2.8 Score=33.75 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=17.1
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
=+++.|++|+|||. ++--++..+..
T Consensus 2 ~l~I~G~~G~GKSt-ll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKST-LLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHH-HHHHHHHHHHh
Confidence 47899999999994 44444444443
No 266
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=82.75 E-value=4.2 Score=36.29 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=19.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
..|.=+++.|+||.||| +|++-++..+..
T Consensus 17 ~~g~L~vi~a~pg~GKT-~~~l~ia~~~a~ 45 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKT-AFALQIALNAAL 45 (259)
T ss_dssp -TT-EEEEEESTTSSHH-HHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCch-HHHHHHHHHHHH
Confidence 45666888999999999 566666555544
No 267
>PRK05595 replicative DNA helicase; Provisional
Probab=82.59 E-value=4.1 Score=39.68 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.8
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|+||+||| +|++-++..+
T Consensus 199 ~~g~liviaarpg~GKT-~~al~ia~~~ 225 (444)
T PRK05595 199 QKGDMILIAARPSMGKT-TFALNIAEYA 225 (444)
T ss_pred CCCcEEEEEecCCCChH-HHHHHHHHHH
Confidence 45666778999999999 6666665543
No 268
>PHA02533 17 large terminase protein; Provisional
Probab=82.55 E-value=6.6 Score=39.38 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|.|.|...+-.+ ..++-.++..+-..|||.+.++-++-..... .+..+++++|+++-
T Consensus 59 ~L~p~Q~~i~~~~-~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---------------------~~~~v~i~A~~~~Q 116 (534)
T PHA02533 59 QMRDYQKDMLKIM-HKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---------------------KDKNVGILAHKASM 116 (534)
T ss_pred CCcHHHHHHHHHH-hcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---------------------CCCEEEEEeCCHHH
Confidence 4788999988876 5566667777789999977665444333221 24589999999999
Q ss_pred HHHHHHHHhhhhcC
Q 042526 136 ALQVLMVASPSLKS 149 (284)
Q Consensus 136 a~Qi~~~~~~l~~~ 149 (284)
|..+.+.++.+...
T Consensus 117 A~~vF~~ik~~ie~ 130 (534)
T PHA02533 117 AAEVLDRTKQAIEL 130 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888765543
No 269
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.49 E-value=4.1 Score=41.50 Aligned_cols=72 Identities=15% Similarity=0.001 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+++-|.+|+... ...++|.|..|||||-+..-=+...+... ....-+.|.++-|+--
T Consensus 2 ~Ln~~Q~~av~~~---~gp~lV~AGaGsGKT~vlt~Ria~li~~~-------------------~v~p~~Il~vTFTnkA 59 (655)
T COG0210 2 KLNPEQREAVLHP---DGPLLVLAGAGSGKTRVLTERIAYLIAAG-------------------GVDPEQILAITFTNKA 59 (655)
T ss_pred CCCHHHHHHHhcC---CCCeEEEECCCCCchhhHHHHHHHHHHcC-------------------CcChHHeeeeechHHH
Confidence 5789999999654 56888889999999966554443333221 0112248999999999
Q ss_pred HHHHHHHHhhhhcC
Q 042526 136 ALQVLMVASPSLKS 149 (284)
Q Consensus 136 a~Qi~~~~~~l~~~ 149 (284)
|..+...+..+...
T Consensus 60 A~em~~Rl~~~~~~ 73 (655)
T COG0210 60 AAEMRERLLKLLGL 73 (655)
T ss_pred HHHHHHHHHHHhCc
Confidence 99988888888763
No 270
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=82.48 E-value=4.2 Score=39.23 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=27.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
|+.+..+---..+.-+ ..|.=+++.|+||+||| +|++-++..+
T Consensus 176 gi~tG~~~LD~~~~G~-~~g~liviag~pg~GKT-~~al~ia~~~ 218 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGL-VKGDLIVIGARPSMGKT-TLALNIAENV 218 (421)
T ss_pred ceeCCChhHHHHhcCC-CCCceEEEEeCCCCCHH-HHHHHHHHHH
Confidence 4444444444444444 66778899999999999 6666665443
No 271
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=82.24 E-value=1.4 Score=38.57 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=14.5
Q ss_pred HcCCCcEEEEccCCCCchHH
Q 042526 69 AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTla 88 (284)
+..+.++++.+|+|||||+.
T Consensus 19 AaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHCC--EEEES-CCCTHHHH
T ss_pred HcCCCCeEEECCCCCCHHHH
Confidence 46789999999999999954
No 272
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=82.13 E-value=7.2 Score=40.70 Aligned_cols=90 Identities=16% Similarity=0.024 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHH--c-------CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEE
Q 042526 56 ESTSILKARIPALA--H-------QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRA 126 (284)
Q Consensus 56 ~pT~iQ~~aip~il--~-------~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 126 (284)
.+.|+|++.+.-+. + .....|+.-..|+|||+- +|++|..+++..+ .....--++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P---------------~~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFP---------------QAKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCc---------------Ccccccccc
Confidence 46689999886551 1 223455666689999964 4677777776531 111122568
Q ss_pred EEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc
Q 042526 127 LIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162 (284)
Q Consensus 127 LIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~ 162 (284)
|||+|. -|+.-+++++.++.....+.+..++|...
T Consensus 302 lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~ 336 (776)
T KOG0390|consen 302 LVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKK 336 (776)
T ss_pred EEEccH-HHHHHHHHHHHHhccccccceeeeecccc
Confidence 999996 45566777777766654556666677654
No 273
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.97 E-value=4.8 Score=33.81 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=19.9
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.|.=+++.|++|+||| +|++-++..+.
T Consensus 31 ~g~l~~i~g~~g~GKT-~~~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKT-TLALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHH-HHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 5777899999999999 45555555444
No 274
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=81.97 E-value=4.4 Score=39.17 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=20.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
..|.=+++.|+||+||| +|++-++.++.
T Consensus 193 ~~G~l~vi~g~pg~GKT-~~~l~~a~~~a 220 (434)
T TIGR00665 193 QPSDLIILAARPSMGKT-AFALNIAENAA 220 (434)
T ss_pred CCCeEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 55777889999999999 66665555443
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=81.89 E-value=0.93 Score=35.25 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=12.0
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
|++.+|+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999943
No 276
>PRK05748 replicative DNA helicase; Provisional
Probab=81.87 E-value=4.7 Score=39.30 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=21.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|+||+||| +|++-++..+
T Consensus 201 ~~G~livIaarpg~GKT-~~al~ia~~~ 227 (448)
T PRK05748 201 QPNDLIIVAARPSVGKT-AFALNIAQNV 227 (448)
T ss_pred CCCceEEEEeCCCCCch-HHHHHHHHHH
Confidence 56777899999999999 6666665544
No 277
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.68 E-value=1.5 Score=42.65 Aligned_cols=55 Identities=27% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH----HHHHHHHhhh
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA----LQVLMVASPS 146 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa----~Qi~~~~~~l 146 (284)
.-.|||+.+||||||||- .-.|.+++ +-|.||.=|.|---| ..|..++.+|
T Consensus 225 eKSNvLllGPtGsGKTll--aqTLAr~l-----------------------dVPfaIcDcTtLTQAGYVGeDVEsvi~KL 279 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLL--AQTLARVL-----------------------DVPFAICDCTTLTQAGYVGEDVESVIQKL 279 (564)
T ss_pred ecccEEEECCCCCchhHH--HHHHHHHh-----------------------CCCeEEecccchhhcccccccHHHHHHHH
Confidence 345899999999999943 23333333 245666666554433 3466677777
Q ss_pred hcCC
Q 042526 147 LKSN 150 (284)
Q Consensus 147 ~~~~ 150 (284)
....
T Consensus 280 l~~A 283 (564)
T KOG0745|consen 280 LQEA 283 (564)
T ss_pred HHHc
Confidence 6543
No 278
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=81.67 E-value=4 Score=41.78 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH--HHHHHHHHHHhhhhcC
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR--ELALQVLMVASPSLKS 149 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR--eLa~Qi~~~~~~l~~~ 149 (284)
....++.++||+|||..+.+-+.+.+ . .+..++|+=|-. +|..-++..++..++.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i-~----------------------~g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDI-R----------------------RGDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHH-H----------------------cCCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 45789999999999977665444433 2 144677777885 7888888888887764
No 279
>PRK04296 thymidine kinase; Provisional
Probab=81.09 E-value=2.3 Score=36.34 Aligned_cols=25 Identities=20% Similarity=-0.032 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l 97 (284)
|.=+++.+++|+|||. .++-++.++
T Consensus 2 g~i~litG~~GsGKTT-~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKST-ELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHH-HHHHHHHHH
Confidence 4456889999999994 344444443
No 280
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=81.09 E-value=1.5 Score=40.80 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=21.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.||-+++.+|+||||| |..+.+-+-+
T Consensus 62 maGravLlaGppgtGKT-AlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKT-ALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchh-HHHHHHHHHh
Confidence 67999999999999999 4455555444
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.09 E-value=7.2 Score=33.66 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|||||..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l 35 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNI 35 (218)
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3466789999999999943
No 282
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.00 E-value=1.9 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+..+++.+++|||||..
T Consensus 36 ~~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCCeEEEECCCCCCHHHH
Confidence 4567999999999999944
No 283
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=80.84 E-value=6 Score=45.69 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHcC-CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 56 ESTSILKARIPALAHQ-RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~-G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
.+++-|..|+-.++.+ .+=++++++.|+|||. ++-.+-.+.+. .+..+++++||.-
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt--~l~~l~~~~~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTE--IAQLLLHLASE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHH--HHHHHHHHHHh---------------------cCCeEEEEeCCHH
Confidence 4789999999988433 3678899999999993 33333333332 3567999999987
Q ss_pred HHHHHHHH
Q 042526 135 LALQVLMV 142 (284)
Q Consensus 135 La~Qi~~~ 142 (284)
-|.++...
T Consensus 486 AA~~L~e~ 493 (1960)
T TIGR02760 486 SAQELRQK 493 (1960)
T ss_pred HHHHHHHH
Confidence 77666554
No 284
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=80.84 E-value=2.6 Score=41.76 Aligned_cols=88 Identities=20% Similarity=0.081 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHc----CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALAH----QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il~----~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.+.|+|.+.+--+.. .-..-|+.-.-|.|||.-.+.-+ +... .+...|||+|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLl----lae~--------------------~ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALL----LAEV--------------------DRAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHH----Hhcc--------------------ccCCeeEEcc
Confidence 345777765532211 11223667789999995433222 2221 2233899999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHH
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSN 169 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l 169 (284)
+.+| .|..+++.++.. ...++.+++|.........+
T Consensus 240 ~VAl-mQW~nEI~~~T~-gslkv~~YhG~~R~~nikel 275 (791)
T KOG1002|consen 240 TVAL-MQWKNEIERHTS-GSLKVYIYHGAKRDKNIKEL 275 (791)
T ss_pred HHHH-HHHHHHHHHhcc-CceEEEEEecccccCCHHHh
Confidence 9998 678888888877 45778888887544444443
No 285
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.63 E-value=1.8 Score=39.81 Aligned_cols=47 Identities=30% Similarity=0.380 Sum_probs=29.0
Q ss_pred cCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 29 ~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
+...+++|++|+||+-+-+- | + ...-=||+.++|||||+.+. ..++.
T Consensus 103 I~~~IPt~eeL~LPevlk~l---------------a---~-~kRGLviiVGaTGSGKSTtm-AaMi~ 149 (375)
T COG5008 103 IETKIPTFEELKLPEVLKDL---------------A---L-AKRGLVIIVGATGSGKSTTM-AAMIG 149 (375)
T ss_pred hhccCCcHHhcCCcHHHHHh---------------h---c-ccCceEEEECCCCCCchhhH-HHHhc
Confidence 34567778888887754331 1 1 22225778899999998554 34443
No 286
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.56 E-value=3.9 Score=35.02 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 042526 70 HQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafl 90 (284)
..|.=+.+.+++|||||...+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346778999999999995443
No 287
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=80.47 E-value=0.89 Score=43.58 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=30.3
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
|-.+|.+++--+...+.|... .+.+|-.++..-+ ..-+.+++.+|+|||||+.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~----~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI----EPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCceEEECCCCCChHHH
Confidence 345678876444445555442 2333332222211 2346799999999999954
No 288
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=1.6 Score=42.90 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.8
Q ss_pred HcCCCcEEEEccCCCCchHH
Q 042526 69 AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTla 88 (284)
+..|+++++.+|+|||||+.
T Consensus 195 AAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 195 AAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HhcCCcEEEecCCCCchHHh
Confidence 46799999999999999954
No 289
>PHA02244 ATPase-like protein
Probab=80.32 E-value=1.8 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.5
Q ss_pred HHcCCCcEEEEccCCCCchH
Q 042526 68 LAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 68 il~~G~dviv~A~TGSGKTl 87 (284)
++..+.+|++.+|||+|||.
T Consensus 115 ~l~~~~PVLL~GppGtGKTt 134 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNH 134 (383)
T ss_pred HHhcCCCEEEECCCCCCHHH
Confidence 34779999999999999993
No 290
>PLN03025 replication factor C subunit; Provisional
Probab=80.29 E-value=2.4 Score=39.29 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=25.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+|.++--++.++..|+.+ +. - .....+++.+|+|+|||..
T Consensus 11 ~l~~~~g~~~~~~~L~~~-----------~~--~-~~~~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVI-----------AR--D-GNMPNLILSGPPGTGKTTS 50 (319)
T ss_pred CHHHhcCcHHHHHHHHHH-----------Hh--c-CCCceEEEECCCCCCHHHH
Confidence 466665566666665542 00 0 1224689999999999943
No 291
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=2.3 Score=40.41 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=35.5
Q ss_pred cccCcccCC-CCHHHHHHHH--HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELR-LHPLLMKSIY--KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~-L~~~Ll~~L~--~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|-.+|+++| |...|.+.=. ++-..+|=-++..-|. .-+.|++.+|+||||||..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~----PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID----PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC----CCCceEeeCCCCCcHHHHH
Confidence 446799995 7666554322 2455566555555443 3468999999999999644
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.18 E-value=4.5 Score=32.23 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=11.9
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
+++.+++|+|||..
T Consensus 2 ~~i~G~~G~GKT~l 15 (165)
T cd01120 2 ILVFGPTGSGKTTL 15 (165)
T ss_pred eeEeCCCCCCHHHH
Confidence 57899999999943
No 293
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.05 E-value=1.5 Score=30.99 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
|...++.+++|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56799999999999943
No 294
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=80.00 E-value=1.1 Score=44.69 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=31.9
Q ss_pred cccCcccCC-CCHHHHHHHHH--cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELR-LHPLLMKSIYK--LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~-L~~~Ll~~L~~--~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
|-.+|.+++ |++.+-..... +-+.+|-.++..-++ ..+.+++.+|+|+|||+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~----~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK----PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC----CCcceEEECCCCCcHHHH
Confidence 346799986 65544333222 234444444443333 346799999999999963
No 295
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=79.88 E-value=2.9 Score=45.71 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
-.++++|.|.-|||||....--++..+... ...-..|+|+.|+.=|..+...+..
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~--------------------~~~~~i~~~t~t~~aa~em~~Ri~~ 63 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNG--------------------VPPSKILCLTYTKAAAAEMQNRVFD 63 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcC--------------------CCCCeEEEEecCHHHHHHHHHHHHH
Confidence 357899999999999976655554443321 1123689999998777776554443
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=79.88 E-value=8.7 Score=36.33 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=25.9
Q ss_pred ccccCccccCcccCCCCHHHHHHHHHcCCCCC
Q 042526 26 EAEISTEFDAWNELRLHPLLMKSIYKLGFKES 57 (284)
Q Consensus 26 ~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~p 57 (284)
....+.++.....+||++.+++.|++.||.+-
T Consensus 24 ~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv 55 (344)
T PLN03187 24 EEDLFESIDKLISQGINAGDVKKLQDAGIYTC 55 (344)
T ss_pred hhhcccCHHHHhhCCCCHHHHHHHHHcCCCcH
Confidence 33457778888888999999999999999743
No 297
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=79.84 E-value=1.7 Score=42.28 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCC--cHHH-----HHHHHHHHcCCCcEEEEccCCCCchHHhH
Q 042526 43 PLLMKSIYKLGFKES--TSIL-----KARIPALAHQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~p--T~iQ-----~~aip~il~~G~dviv~A~TGSGKTlafl 90 (284)
+++---|..+||+.. +.-| ...+|-+ .++.|++..+|+|+|||..|.
T Consensus 174 EWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fv-e~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 174 EWIDVLIRSIGYEPEGFEARQKLLLLARLLPLV-EPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHhcCCCcccCChHHHHHHHHhhHHHH-hcCCcEEEECCCCCCHHHHHH
Confidence 344444677888622 2211 1122544 788999999999999996665
No 298
>PTZ00301 uridine kinase; Provisional
Probab=79.69 E-value=3.1 Score=36.41 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=15.2
Q ss_pred EEEEccCCCCchHHhHHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~ 98 (284)
|-+.+++||||| ++.-.+.+.+.
T Consensus 6 IgIaG~SgSGKT-Tla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKS-SLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHH-HHHHHHHHHHH
Confidence 567899999999 44444444443
No 299
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=79.52 E-value=1.8 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHH--HHH---------HcCCCcEEEEccCCCCchH
Q 042526 54 FKESTSILKARI--PAL---------AHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 54 ~~~pT~iQ~~ai--p~i---------l~~G~dviv~A~TGSGKTl 87 (284)
+.+|+.||..-+ |.+ ++..-=||||+.||||||.
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTT 286 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTT 286 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccc
Confidence 467888985433 322 1556668999999999994
No 300
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=79.44 E-value=4.7 Score=38.59 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=37.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-Cc-EEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 52 LGFKESTSILKARIPALAHQR-KD-VIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G-~d-viv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
+|+..-+--|..|+..+ +.- -+ |.+.++-|||||+-.|.+.+......+
T Consensus 224 wGi~prn~eQ~~ALdlL-ld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~ 274 (436)
T COG1875 224 WGIRPRNAEQRVALDLL-LDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK 274 (436)
T ss_pred hccCcccHHHHHHHHHh-cCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh
Confidence 68887788899999887 432 22 466789999999988888888777654
No 301
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.18 E-value=1.3 Score=41.75 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=31.3
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|.+++-.+...+.|.+. .+.+|.... .+. + ...+.+++.+|+|+|||+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~--~~g-~-~~p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFE--EVG-I-EPPKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHH--hcC-C-CCCceEEEECCCCCCHHHH
Confidence 3455788886555555555442 223322221 121 1 3456799999999999954
No 302
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=79.01 E-value=16 Score=34.19 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHcCCC---cEEEEccCCCCchHHhHHHHHHHHHHHHHH--HHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 57 STSILKARIPALAHQRK---DVIGAAETESGKTRAFGLPALQRLLEEREK--AAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~---dviv~A~TGSGKTlafllPil~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.+|.|...|..++.+|+ -+++++|.|+|||... ..+...+.-.... ..+..+ ..=........|-..++.|
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC~~~~~~~~Cg~C---~sC~~~~~g~HPD~~~i~~ 79 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLCEAPQGGGACGSC---KGCQLLRAGSHPDNFVLEP 79 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCC---HHHHHHhcCCCCCEEEEec
Confidence 46778888877754544 5889999999998432 2333333321000 000000 0000112335677788887
Q ss_pred C----HHHHHHHHHHHhhhhc---CCCceeEEEeCC
Q 042526 132 T----RELALQVLMVASPSLK---SNSLTLAMAAGS 160 (284)
Q Consensus 132 T----ReLa~Qi~~~~~~l~~---~~~i~v~~~~G~ 160 (284)
. .--+.||......+.. ..+.+|.++...
T Consensus 80 ~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a 115 (328)
T PRK05707 80 EEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPA 115 (328)
T ss_pred cCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECCh
Confidence 4 2345677776655543 235677777554
No 303
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=78.89 E-value=1.7 Score=42.96 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 56 ESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.+.|.|..++..++-+| |.-|+.-|-|+|||+.-+-++. .+ .-++||||.+-
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-------------------------kK~clvLcts~ 355 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-------------------------KKSCLVLCTSA 355 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-------------------------cccEEEEecCc
Confidence 67789999999885444 4678888999999977543332 12 22499999999
Q ss_pred HHHHHHHHHHhhhhc
Q 042526 134 ELALQVLMVASPSLK 148 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~ 148 (284)
--+.|+...+..++-
T Consensus 356 VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 356 VSVEQWKQQFKQWST 370 (776)
T ss_pred cCHHHHHHHHHhhcc
Confidence 999999888877654
No 304
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=78.82 E-value=9.9 Score=39.62 Aligned_cols=129 Identities=18% Similarity=0.027 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.+.++|.+-+.-+ ...|-+.|..-.-|=|||+- .|++|.++.... ...|| -||+||-
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~------------------~~~GP-fLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK------------------GIPGP-FLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc------------------CCCCC-eEEEeeH
Confidence 3556665544322 36788999999999999954 456666665532 22456 5899998
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC------CCcccccc--cC---Cccc--cccccCCCCCCcc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK------PNKRKRTR--KG---GEDE--KLDSLKWNPLSQP 199 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~------~~i~v~~~--~~---~~~d--~l~~lv~dEAd~m 199 (284)
--|.+ ..+++.+|+. ++.+.+++|+... .+.+++. -++++++- .+ ..+. .-.++|.|||-+.
T Consensus 227 StL~N-W~~Ef~rf~P--~l~~~~~~Gdk~e--R~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 227 STLDN-WMNEFKRFTP--SLNVVVYHGDKEE--RAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred hhHHH-HHHHHHHhCC--CcceEEEeCCHHH--HHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhh
Confidence 88754 5556666655 5778889998532 2232222 22222220 11 1122 2356888888886
Q ss_pred cccc-cccchh
Q 042526 200 KTTT-LLPSSL 209 (284)
Q Consensus 200 ~~~g-flp~~~ 209 (284)
-+.. .|...+
T Consensus 302 KN~~s~L~~~l 312 (971)
T KOG0385|consen 302 KNEKSKLSKIL 312 (971)
T ss_pred cchhhHHHHHH
Confidence 6554 443433
No 305
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=78.41 E-value=3.2 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
++.+.|.|.||||||.+. --++..+.
T Consensus 23 ~~H~~I~G~TGsGKS~~~-~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV-KVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999543 34455554
No 306
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=78.29 E-value=5.6 Score=43.32 Aligned_cols=106 Identities=21% Similarity=0.113 Sum_probs=64.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
...-|-|+.-.-|=|||. -.|.+|.++.-. ....||. ||+|||--+.+ +.-+|++++.
T Consensus 632 eknlNGILADEmGLGKTI-QtISllAhLACe------------------egnWGPH-LIVVpTsviLn-WEMElKRwcP- 689 (1958)
T KOG0391|consen 632 EKNLNGILADEMGLGKTI-QTISLLAHLACE------------------EGNWGPH-LIVVPTSVILN-WEMELKRWCP- 689 (1958)
T ss_pred Hhcccceehhhhcccchh-HHHHHHHHHHhc------------------ccCCCCc-eEEeechhhhh-hhHHHhhhCC-
Confidence 334567888999999994 345555555433 1235664 78889876643 6667777766
Q ss_pred CCceeEEEeCCCcchHHHHHhcC----CCc-ccccc----cCCc-----cccccccCCCCCCcccc
Q 042526 150 NSLTLAMAAGSPLLTSEHSNRRK----PNK-RKRTR----KGGE-----DEKLDSLKWNPLSQPKT 201 (284)
Q Consensus 150 ~~i~v~~~~G~~~~~q~~~l~~~----~~i-~v~~~----~~~~-----~d~l~~lv~dEAd~m~~ 201 (284)
+++|..|+|..... ...++ |+- +|++. +... =.+-.|||+|||....+
T Consensus 690 -glKILTYyGs~kEr---keKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn 751 (1958)
T KOG0391|consen 690 -GLKILTYYGSHKER---KEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN 751 (1958)
T ss_pred -cceEeeecCCHHHH---HHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc
Confidence 78899999985433 33332 332 33332 1111 12567899999877443
No 307
>PRK08506 replicative DNA helicase; Provisional
Probab=78.27 E-value=5.1 Score=39.46 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=20.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|+||.||| +|++-++..+
T Consensus 190 ~~G~LivIaarpg~GKT-~fal~ia~~~ 216 (472)
T PRK08506 190 NKGDLIIIAARPSMGKT-TLCLNMALKA 216 (472)
T ss_pred CCCceEEEEcCCCCChH-HHHHHHHHHH
Confidence 55777888999999999 6666665544
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.21 E-value=1.3 Score=40.57 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.+.++++.+|+|||||...
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4568999999999999654
No 309
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=78.17 E-value=1.5 Score=37.61 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchHHhHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLP 92 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllP 92 (284)
...|++.+|.|||||.-|..-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L 23 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQL 23 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 568999999999999766543
No 310
>PRK10867 signal recognition particle protein; Provisional
Probab=78.04 E-value=13 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
-+++++++|||||.+.
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999654
No 311
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=78.03 E-value=3.4 Score=35.98 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.|.-+++.+++|+|||.
T Consensus 15 ~g~~~li~G~~G~GKt~ 31 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTT 31 (224)
T ss_pred CCeEEEEECCCCCCHHH
Confidence 47788999999999984
No 312
>PRK06904 replicative DNA helicase; Validated
Probab=77.89 E-value=9.2 Score=37.73 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=20.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+|+.|.||.||| +|++-++..+
T Consensus 219 ~~G~LiiIaarPg~GKT-afalnia~~~ 245 (472)
T PRK06904 219 QPSDLIIVAARPSMGKT-TFAMNLCENA 245 (472)
T ss_pred CCCcEEEEEeCCCCChH-HHHHHHHHHH
Confidence 56777788999999999 5666665544
No 313
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.85 E-value=1.4 Score=35.15 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.5
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
+|++.+++|+|||.
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 58999999999994
No 314
>PRK05642 DNA replication initiation factor; Validated
Probab=77.79 E-value=5.7 Score=35.13 Aligned_cols=16 Identities=6% Similarity=0.015 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+.+++.+++|+|||.-
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999943
No 315
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.74 E-value=5.3 Score=35.03 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=18.4
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
-+++.+++|+|||. .+-.+.+.+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~ 60 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQK 60 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHH
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHh
Confidence 58999999999996 44555555544
No 316
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=77.60 E-value=1.5 Score=33.99 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=11.5
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
+++.+++|||||.
T Consensus 2 I~I~G~~gsGKST 14 (121)
T PF13207_consen 2 IIISGPPGSGKST 14 (121)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999993
No 317
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=77.55 E-value=4.2 Score=43.47 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=51.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
++-..||-|-.+|-.- ..-.++++.+|+|+|||-..+ =+|..++.+ .+.++++|++.+
T Consensus 735 n~v~ft~~qveai~sg-~qpgltmvvgppgtgktd~av-qil~~lyhn--------------------~p~qrTlivths 792 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSG-MQPGLTMVVGPPGTGKTDVAV-QILSVLYHN--------------------SPNQRTLIVTHS 792 (1320)
T ss_pred chhccCHHHHHHHHhc-CCCCceeeecCCCCCCcchhh-hhhhhhhhc--------------------CCCcceEEEEec
Confidence 3445688999999887 667799999999999995443 444444443 357889999998
Q ss_pred HHHHHHHHHHHhh
Q 042526 133 RELALQVLMVASP 145 (284)
Q Consensus 133 ReLa~Qi~~~~~~ 145 (284)
..--+|...-+.+
T Consensus 793 nqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 793 NQALNQLFEKIMA 805 (1320)
T ss_pred ccchhHHHHHHHh
Confidence 8777776655443
No 318
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=77.49 E-value=4.3 Score=40.09 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
-.|.-+++.+++|+|||.
T Consensus 261 ~~gs~~li~G~~G~GKt~ 278 (484)
T TIGR02655 261 FKDSIILATGATGTGKTL 278 (484)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 447789999999999995
No 319
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=77.35 E-value=2.1 Score=43.24 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
...+++++.|+||||||. ++-.+|..+
T Consensus 174 ~e~~h~li~G~tGsGKs~-~i~~ll~~~ 200 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSV-AIRKLLRWI 200 (566)
T ss_pred ccccceEEEcCCCCCHHH-HHHHHHHHH
Confidence 456799999999999995 333344433
No 320
>PRK08840 replicative DNA helicase; Provisional
Probab=77.24 E-value=8.5 Score=37.89 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
|+.+..+---..+.-+ ..|.=+++.|.||.||| +|++-++..+
T Consensus 199 gi~TG~~~LD~~~~G~-~~g~LiviaarPg~GKT-afalnia~~~ 241 (464)
T PRK08840 199 GVDTGFTDLNKKTAGL-QGSDLIIVAARPSMGKT-TFAMNLCENA 241 (464)
T ss_pred CcCCCcHHHHHhhcCC-CCCceEEEEeCCCCchH-HHHHHHHHHH
Confidence 4444443333444444 66777888999999999 5655555443
No 321
>PRK07004 replicative DNA helicase; Provisional
Probab=77.13 E-value=6 Score=38.87 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=20.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|.||+||| +|++-++.++
T Consensus 211 ~~g~liviaarpg~GKT-~~al~ia~~~ 237 (460)
T PRK07004 211 HGGELIIVAGRPSMGKT-AFSMNIGEYV 237 (460)
T ss_pred CCCceEEEEeCCCCCcc-HHHHHHHHHH
Confidence 55777888999999999 5666555443
No 322
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=77.12 E-value=2.9 Score=41.05 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 60 ILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 60 iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.....+..+ ..++++++.+++|+|||...
T Consensus 183 ~le~l~~~L-~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRL-TIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHH-hcCCCEEEECCCCCCHHHHH
Confidence 444455555 78999999999999999544
No 323
>PRK06749 replicative DNA helicase; Provisional
Probab=77.02 E-value=6.7 Score=38.18 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.+--+ ..|.=+++.|.||.||| +|++-+..++.
T Consensus 179 ~t~Gl-~~G~LiiIaarPgmGKT-afal~ia~~~a 211 (428)
T PRK06749 179 MTCGL-QEGDFVVLGARPSMGKT-AFALNVGLHAA 211 (428)
T ss_pred HhCCC-CCCcEEEEEeCCCCCch-HHHHHHHHHHH
Confidence 34333 56667888999999999 67766665543
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=76.72 E-value=5.1 Score=39.20 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=17.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil 94 (284)
..|.-+++.+++|+|||. |++-++
T Consensus 78 ~~Gs~~lI~G~pG~GKTt-L~lq~a 101 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKST-LLLQVA 101 (446)
T ss_pred cCCEEEEEECCCCCCHHH-HHHHHH
Confidence 346788999999999994 333333
No 325
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.67 E-value=2.9 Score=35.83 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchHHhHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil 94 (284)
...++++.+.||||||.+...-+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~ 60 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLL 60 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCccHHHHHHHH
Confidence 345899999999999965544333
No 326
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.54 E-value=2.5 Score=41.22 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=37.1
Q ss_pred cCccccCcccCCCCHHHHHHHHH-c-CCCCCcH-HHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 29 ISTEFDAWNELRLHPLLMKSIYK-L-GFKESTS-ILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 29 ~p~~~~~F~~l~L~~~Ll~~L~~-~-g~~~pT~-iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
+|.| .+|..+.+.+.+-+.|.+ + .|..=-. ......| . .|..++-+|+||||| +|+.+|.+.+
T Consensus 194 f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka-w---KRGYLLYGPPGTGKS-S~IaAmAn~L 259 (457)
T KOG0743|consen 194 FPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA-W---KRGYLLYGPPGTGKS-SFIAAMANYL 259 (457)
T ss_pred CCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc-h---hccceeeCCCCCCHH-HHHHHHHhhc
Confidence 4566 889999888877766533 1 1111111 1111111 1 356889999999999 6666666554
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=76.37 E-value=2.7 Score=37.35 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHH---cCCC-cEEEEccCCCCchHHh
Q 042526 56 ESTSILKARIPALA---HQRK-DVIGAAETESGKTRAF 89 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~-dviv~A~TGSGKTlaf 89 (284)
.+++.+..++-.+. ..+. .+++.+++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 46666666665541 2233 6889999999999443
No 328
>PRK08006 replicative DNA helicase; Provisional
Probab=76.11 E-value=9.3 Score=37.70 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=20.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|.||.||| +|++-++..+
T Consensus 222 ~~G~LiiIaarPgmGKT-afalnia~~~ 248 (471)
T PRK08006 222 QPSDLIIVAARPSMGKT-TFAMNLCENA 248 (471)
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHH
Confidence 56777788999999999 6666665544
No 329
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=76.07 E-value=2.3 Score=44.19 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=34.0
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|..+|.+++..+.+.+.|.+. .+.+|..++..-+ ...+.+++.+|+|||||+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI----RPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCceEEEECCCCCCHHHH
Confidence 3456788888777777777653 2233332222211 2346799999999999954
No 330
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=75.97 E-value=1.4 Score=39.59 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=13.2
Q ss_pred cccCcccCCCCHHHHHHHHH
Q 042526 32 EFDAWNELRLHPLLMKSIYK 51 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~ 51 (284)
|..-|+.+.|+...-+||..
T Consensus 73 P~klwErikLSkNyekALeQ 92 (303)
T KOG3064|consen 73 PRKLWERIKLSKNYEKALEQ 92 (303)
T ss_pred cHHHHHHHhcchhHHHHHHH
Confidence 33447777777777777654
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=75.73 E-value=1.6 Score=34.69 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.6
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
+++++++|||||.
T Consensus 2 ii~~G~pgsGKSt 14 (143)
T PF13671_consen 2 IILCGPPGSGKST 14 (143)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999993
No 332
>PRK06893 DNA replication initiation factor; Validated
Probab=75.66 E-value=3.7 Score=36.16 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.2
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
...+++.+|+|+|||.
T Consensus 39 ~~~l~l~G~~G~GKTh 54 (229)
T PRK06893 39 QPFFYIWGGKSSGKSH 54 (229)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3457999999999993
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.44 E-value=5.3 Score=34.77 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=15.2
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..++.+++.+++|||||.
T Consensus 40 ~~~~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSH 57 (227)
T ss_pred CCCCeEEEECCCCCCHHH
Confidence 346789999999999993
No 334
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=75.21 E-value=3 Score=35.26 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.7
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
++++.+|||+|||.
T Consensus 5 ~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68999999999993
No 335
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=74.88 E-value=2 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
..++++.+|+|||||...
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 458999999999999543
No 336
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=74.41 E-value=5.9 Score=32.84 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=13.9
Q ss_pred EEEEccCCCCchHHhHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~ 96 (284)
+.+.+++|||||. ++--++..
T Consensus 2 i~i~G~~gsGKTt-l~~~l~~~ 22 (155)
T TIGR00176 2 LQIVGPKNSGKTT-LIERLVKA 22 (155)
T ss_pred EEEECCCCCCHHH-HHHHHHHH
Confidence 4678999999993 33333433
No 337
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=74.23 E-value=5.4 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.3
Q ss_pred CCCcEEEEccCCCCch
Q 042526 71 QRKDVIGAAETESGKT 86 (284)
Q Consensus 71 ~G~dviv~A~TGSGKT 86 (284)
.+|-+++.+|+|||||
T Consensus 1 ~~r~ivl~Gpsg~GK~ 16 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKS 16 (183)
T ss_dssp SSSEEEEESSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3678999999999999
No 338
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.74 E-value=6.4 Score=39.00 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=40.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
+..|..++.++.-.+.|++. ..-|-=-|.+-+-.++.+.+-+++.+.||||||.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt 77 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT 77 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCccc
Confidence 67799999999888888764 2334334555555555888899999999999994
No 339
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.74 E-value=2.2 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.2
Q ss_pred EEEEccCCCCchHHhH
Q 042526 75 VIGAAETESGKTRAFG 90 (284)
Q Consensus 75 viv~A~TGSGKTlafl 90 (284)
+++.+|||+|||.+..
T Consensus 4 i~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCchHhHHH
Confidence 6789999999996643
No 340
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=73.60 E-value=7.9 Score=40.35 Aligned_cols=66 Identities=14% Similarity=-0.028 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHH
Q 042526 60 ILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQV 139 (284)
Q Consensus 60 iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi 139 (284)
-|+.|.-.. +..+=-|+++|+|||||+.-+.. ++.|+.+. ....... -.||+|-|..-+.|+
T Consensus 382 Sq~~A~qs~-ltyelsliqgppGTgkt~vtlka-v~tLL~n~---------------s~~~~~e-pIlvvC~Tnhavdq~ 443 (1025)
T KOG1807|consen 382 SQQFAKQSK-LTYELSLIQGPPGTGKTLVTLKA-VDTLLLNS---------------SGYTEPE-PILVVCLTNHAVDQY 443 (1025)
T ss_pred HHHHHHHHH-hhhhhheeecCCCCCceeehHHH-HHHHHhcc---------------ccccccc-ceeeeehhhHHHHHH
Confidence 477887776 67777899999999999877644 44444432 1111122 378999998888886
Q ss_pred HHHH
Q 042526 140 LMVA 143 (284)
Q Consensus 140 ~~~~ 143 (284)
...+
T Consensus 444 ligi 447 (1025)
T KOG1807|consen 444 LIGI 447 (1025)
T ss_pred HHHH
Confidence 5543
No 341
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=73.41 E-value=2.2 Score=32.97 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=11.8
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
|++.+++|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 67899999999943
No 342
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.34 E-value=1.6 Score=36.96 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=13.9
Q ss_pred EEEEccCCCCchHHhHH
Q 042526 75 VIGAAETESGKTRAFGL 91 (284)
Q Consensus 75 viv~A~TGSGKTlafll 91 (284)
.|+.+++|||||..|..
T Consensus 5 ~IvaG~NGsGKstv~~~ 21 (187)
T COG4185 5 DIVAGPNGSGKSTVYAS 21 (187)
T ss_pred EEEecCCCCCceeeeec
Confidence 46789999999987754
No 343
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=73.31 E-value=5.9 Score=37.74 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=13.3
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
.+=+++.+|+|||||.
T Consensus 78 r~il~L~GPPGsGKSt 93 (361)
T smart00763 78 KQILYLLGPVGGGKSS 93 (361)
T ss_pred CcEEEEECCCCCCHHH
Confidence 3567999999999993
No 344
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=73.26 E-value=5.6 Score=32.40 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=17.8
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~~ 99 (284)
|.++++.+|||| +++--++..+..
T Consensus 3 v~VvG~~~sGKT-Tl~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKT-TLIRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHH-HHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HHHHHHHHHHhH
Confidence 678999999999 555566665554
No 345
>CHL00181 cbbX CbbX; Provisional
Probab=73.22 E-value=2.6 Score=38.72 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.|.++++.+|+|||||...-
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36679999999999995543
No 346
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=73.21 E-value=8.1 Score=36.98 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
+..+++.+++|+|||... ..+...+.
T Consensus 136 ~n~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 346899999999999433 34444443
No 347
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=73.09 E-value=1.7 Score=42.99 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=33.0
Q ss_pred ccccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLG--FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|+++.-.+.+...|.+.- +..|...+.... ...+.+++.+|+|||||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~----~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGA----KIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC----CCCCcEEEECCCCCCHHHH
Confidence 45568999976666665554320 233333332211 2345799999999999954
No 348
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=73.08 E-value=3.5 Score=39.97 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
..++++.+|||||||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999543
No 349
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=72.80 E-value=5.3 Score=32.01 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
.....|++.+++||||+.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp CSSS-EEEECCTTSSHHHH
T ss_pred CCCCcEEEEcCCCCCHHHH
Confidence 6788999999999999964
No 350
>PHA00729 NTP-binding motif containing protein
Probab=72.73 E-value=3.7 Score=36.56 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=16.4
Q ss_pred cEEEEccCCCCchHHhHHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l 97 (284)
++++.+++|+|||. ++..+...+
T Consensus 19 nIlItG~pGvGKT~-LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTT-YALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHH
Confidence 79999999999993 333444443
No 351
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=72.71 E-value=7.1 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
-.|+-+.+.+|+||||| .+++.++...
T Consensus 53 p~G~iteI~G~~GsGKT-tLaL~~~~~~ 79 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKT-TLALHAIAEA 79 (321)
T ss_pred cCCeEEEEECCCCCCHH-HHHHHHHHHH
Confidence 45778899999999999 4445544443
No 352
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.64 E-value=4.2 Score=37.40 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
.+++.+|+|||||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999543
No 353
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=72.49 E-value=20 Score=33.48 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHHH---cCCC---cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 54 FKESTSILKARIPALA---HQRK---DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il---~~G~---dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
+..++|.|..+|..+. .+|+ -+++++|.|+||+.. ...+...++-.... .+. .... -........|-..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~-~~~-~c~~--c~~~~~g~HPD~~ 76 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPD-PAA-AQRT--RQLIAAGTHPDLQ 76 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCC-CCC-cchH--HHHHhcCCCCCEE
Confidence 4567888888887762 2344 589999999999743 23334444321100 000 0000 0012234566677
Q ss_pred EE--ecCH--------HHHHHHHHHHhhhhcC---CCceeEEEeCCC
Q 042526 128 II--NPTR--------ELALQVLMVASPSLKS---NSLTLAMAAGSP 161 (284)
Q Consensus 128 IL--~PTR--------eLa~Qi~~~~~~l~~~---~~i~v~~~~G~~ 161 (284)
+| .|.. --..||......+... .+.+|+++....
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae 123 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPAD 123 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHh
Confidence 77 5642 2366777666555432 356787877653
No 354
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=72.45 E-value=3.9 Score=42.36 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 43 PLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.+.|++.|-..+..|=---||.- ...+++++.+-||||||.++ --+|..+
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~-~E~~H~li~GttGSGKS~~i-~~LL~~i 209 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRD-SEIQNFCLHGTVGAGKSEVI-RRLANYA 209 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcc-hhhcceEEeCCCCCCHHHHH-HHHHHHH
Confidence 56677777766444433322223333 56789999999999999743 3444433
No 355
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.40 E-value=9.7 Score=37.06 Aligned_cols=20 Identities=25% Similarity=0.041 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.|.-+.+.+|||+|||....
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46668899999999997664
No 356
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=72.39 E-value=9.2 Score=37.26 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=16.8
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.+++.+++|+|||.. +-.+...+
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5699999999999943 23344443
No 357
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=72.29 E-value=10 Score=37.22 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=17.0
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
+.+++.|++|+|||. .+-.+.+.+.
T Consensus 142 npl~i~G~~G~GKTH-Ll~Ai~~~l~ 166 (450)
T PRK14087 142 NPLFIYGESGMGKTH-LLKAAKNYIE 166 (450)
T ss_pred CceEEECCCCCcHHH-HHHHHHHHHH
Confidence 468999999999992 2234444333
No 358
>PRK00131 aroK shikimate kinase; Reviewed
Probab=72.08 E-value=2.6 Score=34.58 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
+.+..+++.+++|||||..
T Consensus 2 ~~~~~i~l~G~~GsGKstl 20 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTI 20 (175)
T ss_pred CCCCeEEEEcCCCCCHHHH
Confidence 5678899999999999944
No 359
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=72.05 E-value=12 Score=35.30 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 60 ILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 60 iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
+|-+.|+.++..|..+++.++.|.|||++.+.-.|.
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~Ia 112 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIA 112 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHH
Confidence 566777877677888899999999999877655444
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.86 E-value=7.1 Score=38.54 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
-.|+-+++.+++|||||.-.
T Consensus 19 p~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 45889999999999999443
No 361
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=71.54 E-value=4.3 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
..++++.+|||+|||...
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 357999999999999543
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.39 E-value=8.3 Score=40.32 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchHHhHH
Q 042526 72 RKDVIGAAETESGKTRAFGL 91 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafll 91 (284)
|+-+.+.+|||+|||.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45578999999999977654
No 363
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=71.35 E-value=3.7 Score=38.22 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=38.3
Q ss_pred ccccCcccCC-CCHHHHHHHHH--cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 31 TEFDAWNELR-LHPLLMKSIYK--LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 31 ~~~~~F~~l~-L~~~Ll~~L~~--~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.|..+|.++| |...|.+.-.. +-.++|--++..-| ..-+.||+.+++|+||||-.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHH
Confidence 5678899995 66655544333 45666666666555 33578999999999999643
No 364
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=71.27 E-value=6.6 Score=38.65 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
.+.++++|++.|.+.|. .+.+.+++.+++|+||| +|+-++.+.+..
T Consensus 244 ~~ledY~L~dkl~eRL~-------------------eraeGILIAG~PGaGKs-TFaqAlAefy~~ 289 (604)
T COG1855 244 LSLEDYGLSDKLKERLE-------------------ERAEGILIAGAPGAGKS-TFAQALAEFYAS 289 (604)
T ss_pred echhhcCCCHHHHHHHH-------------------hhhcceEEecCCCCChh-HHHHHHHHHHHh
Confidence 45667778888777664 33567999999999999 777777766654
No 365
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=71.12 E-value=6.6 Score=34.41 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.2
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
-.|.-+++.+++|||||.
T Consensus 23 ~~g~~~~i~G~~GsGKt~ 40 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSV 40 (234)
T ss_pred cCCcEEEEECCCCCChHH
Confidence 347788999999999994
No 366
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=71.03 E-value=9.8 Score=37.12 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=17.3
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
..+++.+++|+|||.. +-.+.+.+.
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHH
Confidence 4699999999999943 334444443
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.81 E-value=12 Score=37.19 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCchHHhHH
Q 042526 71 QRKDVIGAAETESGKTRAFGL 91 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafll 91 (284)
.|.-+.+.+|||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 356688999999999976543
No 368
>PRK13531 regulatory ATPase RavA; Provisional
Probab=70.79 E-value=6.2 Score=39.14 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=27.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 45 Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|...|.+.=+.+-.-|.... -++ +.|.+|++.+|+|+|||+..
T Consensus 14 l~~~l~~~i~gre~vI~lll-~aa-lag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 14 LSSALEKGLYERSHAIRLCL-LAA-LSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHhhhccCcHHHHHHHH-HHH-ccCCCEEEECCCChhHHHHH
Confidence 44455543344434443332 233 78999999999999999544
No 369
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=70.75 E-value=6.8 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+.+.+++|||||...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34678899999999998443
No 370
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=70.34 E-value=3.7 Score=38.26 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=15.8
Q ss_pred EEEEccCCCCchHHhHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l 97 (284)
+++.+||+|||| +..+-+..++
T Consensus 6 i~I~GPTAsGKT-~lai~LAk~~ 27 (308)
T COG0324 6 IVIAGPTASGKT-ALAIALAKRL 27 (308)
T ss_pred EEEECCCCcCHH-HHHHHHHHHc
Confidence 688999999999 4444444443
No 371
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=70.24 E-value=5.2 Score=39.03 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCcEEEEccCCCCch
Q 042526 72 RKDVIGAAETESGKT 86 (284)
Q Consensus 72 G~dviv~A~TGSGKT 86 (284)
.+++++.+|||+|||
T Consensus 50 ~~~ILliGp~G~GKT 64 (443)
T PRK05201 50 PKNILMIGPTGVGKT 64 (443)
T ss_pred CceEEEECCCCCCHH
Confidence 478999999999999
No 372
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=69.97 E-value=3.1 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
|..+++.+|+|||||..
T Consensus 2 g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56789999999999943
No 373
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.96 E-value=3 Score=43.34 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=32.9
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+-.+|++++-....++.|.++ -+.+|--++... + ..++.+++.+|+|||||+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i-~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---I-EPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---C-CCCceEEEECCCCCChHHH
Confidence 446788987666666665542 222322222222 1 4467899999999999944
No 374
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=69.86 E-value=4.3 Score=37.93 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.++++.+|+|+|||.. +--++..+
T Consensus 40 ~~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHHH
Confidence 36899999999999943 33344433
No 375
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=69.79 E-value=20 Score=35.91 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCcccccccccchhhhcccCCCCCCCcc
Q 042526 184 EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~~ 223 (284)
++.+=..+|||||-..++......++.+-..+-+++++-+
T Consensus 222 els~~svVvFDEAHNIDnvCIeslSv~i~r~~l~ra~~~l 261 (755)
T KOG1131|consen 222 ELSKESVVVFDEAHNIDNVCIESLSVDITRRTLERASRNL 261 (755)
T ss_pred hhCcCcEEEecccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 4445566999999999998888888777665555555444
No 376
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=69.66 E-value=9.1 Score=40.31 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=17.2
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.+.+|++|||+||| +++-.++....
T Consensus 437 ghT~I~G~tGaGKT-vLl~~llaq~~ 461 (796)
T COG3451 437 GHTLIIGPTGAGKT-VLLSFLLAQAL 461 (796)
T ss_pred CCeEEECCCCCCHH-HHHHHHHHHHH
Confidence 47899999999999 33334444333
No 377
>PHA02535 P terminase ATPase subunit; Provisional
Probab=69.57 E-value=15 Score=37.14 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 042526 40 RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119 (284)
Q Consensus 40 ~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (284)
.+++.....|...=...+.+.|...+..- ...+.-++.-.--+|+|++|..-++...+..
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~-~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~------------------- 181 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAG-LHHRTRNILKSRQIGATYYFAREALEDALLT------------------- 181 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCc-cccceeeEeeecccchHHHHHHHHHHHHHhc-------------------
Confidence 37777777777765678999999988542 2234344444456999999998777655542
Q ss_pred CCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 120 PKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 120 ~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
+-..++|+|+++.|.+....+..+++.
T Consensus 182 ---G~nqiflSas~~QA~~f~~yi~~~a~~ 208 (581)
T PHA02535 182 ---GRNQIFLSASKAQAHVFKQYIIAFARE 208 (581)
T ss_pred ---CCceEEECCCHHHHHHHHHHHHHHHHh
Confidence 224688999999999988888888664
No 378
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=69.25 E-value=3.7 Score=34.92 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 63 ARIPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 63 ~aip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
.++..+ +.|.| +++.++||||||.+.
T Consensus 14 ~~v~~~-~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSA-LDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHH-hCCcceeEEEECCCCCcceEec
Confidence 445555 67765 577799999999664
No 379
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.19 E-value=15 Score=35.82 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchHHhHH
Q 042526 72 RKDVIGAAETESGKTRAFGL 91 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafll 91 (284)
.+.+.+.+|||+|||.+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred CcEEEEECCCCCcHHHHHHH
Confidence 35788999999999965443
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=68.87 E-value=25 Score=34.24 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
-+++++++|||||.+.
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4788999999999654
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.42 E-value=13 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=11.9
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
+++.+++|+|||..
T Consensus 3 ~~~~G~~G~GKTt~ 16 (173)
T cd03115 3 ILLVGLQGVGKTTT 16 (173)
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999955
No 382
>PRK14530 adenylate kinase; Provisional
Probab=68.41 E-value=3.3 Score=35.91 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+..+++.+++|||||.
T Consensus 2 ~~~~I~i~G~pGsGKsT 18 (215)
T PRK14530 2 SQPRILLLGAPGAGKGT 18 (215)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999983
No 383
>PHA02542 41 41 helicase; Provisional
Probab=68.41 E-value=9.6 Score=37.64 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=18.5
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
.|.=+++.|+||.||| +|++-+...+
T Consensus 189 ~G~LiiIaarPgmGKT-tfalniA~~~ 214 (473)
T PHA02542 189 RKTLNVLLAGVNVGKS-LGLCSLAADY 214 (473)
T ss_pred CCcEEEEEcCCCccHH-HHHHHHHHHH
Confidence 3556788999999999 5555555443
No 384
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=68.28 E-value=20 Score=29.00 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=13.2
Q ss_pred CCcEE--EEccCCCCchHHh
Q 042526 72 RKDVI--GAAETESGKTRAF 89 (284)
Q Consensus 72 G~dvi--v~A~TGSGKTlaf 89 (284)
.+.++ .+++||+|||.+-
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CCCEEEEeecCCCCcHHHHH
Confidence 34455 7899999999543
No 385
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=68.16 E-value=10 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
-.|+-+.+.+|+||||| .+++.++...
T Consensus 53 p~G~iteI~Gp~GsGKT-tLal~~~~~~ 79 (325)
T cd00983 53 PKGRIIEIYGPESSGKT-TLALHAIAEA 79 (325)
T ss_pred cCCeEEEEECCCCCCHH-HHHHHHHHHH
Confidence 34778889999999999 5555555443
No 386
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.06 E-value=3.3 Score=38.00 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
-++|+..+|+|||||+.
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 57999999999999964
No 387
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=67.96 E-value=14 Score=38.44 Aligned_cols=72 Identities=25% Similarity=0.128 Sum_probs=49.5
Q ss_pred HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhc
Q 042526 69 AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLK 148 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~ 148 (284)
+-+|-+-|+.-.-|=|||. -.|+++.+|.+.. +-.|| .||++|.--| .+....+++
T Consensus 583 YdqGiNGILADeMGLGKTV-QsisvlAhLaE~~------------------nIwGP-FLVVtpaStL----~NWaqEisr 638 (1185)
T KOG0388|consen 583 YDQGINGILADEMGLGKTV-QSISVLAHLAETH------------------NIWGP-FLVVTPASTL----HNWAQEISR 638 (1185)
T ss_pred HHccccceehhhhccchhH-HHHHHHHHHHHhc------------------cCCCc-eEEeehHHHH----hHHHHHHHH
Confidence 3568888999999999994 4577888877753 23566 5888886665 334444444
Q ss_pred CC-CceeEEEeCCCcch
Q 042526 149 SN-SLTLAMAAGSPLLT 164 (284)
Q Consensus 149 ~~-~i~v~~~~G~~~~~ 164 (284)
.+ .++|+-+-|++...
T Consensus 639 FlP~~k~lpywGs~~eR 655 (1185)
T KOG0388|consen 639 FLPSFKVLPYWGSPSER 655 (1185)
T ss_pred hCccceeecCcCChhhh
Confidence 44 57787787876544
No 388
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=5.9 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
.++++-++||||||++-
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 37999999999999653
No 389
>PRK06321 replicative DNA helicase; Provisional
Probab=67.81 E-value=19 Score=35.60 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=19.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|+||+||| +|++-+...+
T Consensus 224 ~~G~LiiiaarPgmGKT-afal~ia~~~ 250 (472)
T PRK06321 224 SPSNLMILAARPAMGKT-ALALNIAENF 250 (472)
T ss_pred CCCcEEEEEeCCCCChH-HHHHHHHHHH
Confidence 44656688999999999 5666555544
No 390
>PRK08760 replicative DNA helicase; Provisional
Probab=67.71 E-value=8.6 Score=37.95 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|+||+||| +|++-++..+
T Consensus 227 ~~G~LivIaarPg~GKT-afal~iA~~~ 253 (476)
T PRK08760 227 QPTDLIILAARPAMGKT-TFALNIAEYA 253 (476)
T ss_pred CCCceEEEEeCCCCChh-HHHHHHHHHH
Confidence 55667788999999999 6666665544
No 391
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=67.67 E-value=4.7 Score=37.46 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=16.7
Q ss_pred cCCCc--EEEEccCCCCchHHhHHH
Q 042526 70 HQRKD--VIGAAETESGKTRAFGLP 92 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlafllP 92 (284)
+.|.| |++.++||||||.+..=+
T Consensus 71 l~G~n~~i~ayG~tgSGKT~Tm~G~ 95 (335)
T PF00225_consen 71 LDGYNATIFAYGQTGSGKTYTMFGS 95 (335)
T ss_dssp HTT-EEEEEEEESTTSSHHHHHTBS
T ss_pred hcCCceEEEeecccccccccccccc
Confidence 67776 566789999999775544
No 392
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=5.8 Score=39.80 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=37.7
Q ss_pred ccCccccCcccCC---CCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 28 EISTEFDAWNELR---LHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 28 ~~p~~~~~F~~l~---L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+-.|=-.|++|| |..+.-..+++. ..-.|--+-+.-|+++ +.+++-+|+|+||||..
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV----KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV----KGILLYGPPGTGKTLIA 273 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce----eeEEEECCCCCChhHHH
Confidence 3445556799985 677665555442 2223444555555554 68999999999999754
No 393
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=67.56 E-value=3.5 Score=38.26 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=13.1
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
.+=+++.+|||||||.
T Consensus 4 ~~ii~I~GpTasGKS~ 19 (300)
T PRK14729 4 NKIVFIFGPTAVGKSN 19 (300)
T ss_pred CcEEEEECCCccCHHH
Confidence 3457899999999993
No 394
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=67.53 E-value=5.5 Score=35.35 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.0
Q ss_pred EEEEccCCCCchHHhHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~ 95 (284)
+++.+|||||||. ..+.+.+
T Consensus 4 ~~i~GpT~tGKt~-~ai~lA~ 23 (233)
T PF01745_consen 4 YLIVGPTGTGKTA-LAIALAQ 23 (233)
T ss_dssp EEEE-STTSSHHH-HHHHHHH
T ss_pred EEEECCCCCChhH-HHHHHHH
Confidence 4778999999993 3344433
No 395
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=67.50 E-value=11 Score=31.69 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCCC-----cHHHHHHHHHHHcCCCcEEEEccCCCCch
Q 042526 43 PLLMKSIYKLGFKES-----TSILKARIPALAHQRKDVIGAAETESGKT 86 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~p-----T~iQ~~aip~il~~G~dviv~A~TGSGKT 86 (284)
+.++....++||.-. +.-....+... +.++-+++.+++|.||+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~-l~~k~~vl~G~SGvGKS 49 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKEL-LKGKTSVLLGQSGVGKS 49 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHH-HTTSEEEEECSTTSSHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHH-hcCCEEEEECCCCCCHH
Confidence 356677777887622 33444555666 77899999999999998
No 396
>PRK05636 replicative DNA helicase; Provisional
Probab=67.48 E-value=14 Score=36.85 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~ 96 (284)
..|.=+++.|+||+||| +|.+-++..
T Consensus 263 ~~G~Liiiaarpg~GKT-~~al~~a~~ 288 (505)
T PRK05636 263 RGGQMIIVAARPGVGKS-TLALDFMRS 288 (505)
T ss_pred CCCceEEEEeCCCCCHH-HHHHHHHHH
Confidence 44555688999999999 455544443
No 397
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=67.44 E-value=7.5 Score=40.60 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchHHhH
Q 042526 73 KDVIGAAETESGKTRAFG 90 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafl 90 (284)
.+++|.|+||||||...-
T Consensus 431 ~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred cceEEEcCCCCCHHHHHH
Confidence 479999999999995543
No 398
>PF11595 DUF3245: Protein of unknown function (DUF3245); InterPro: IPR021641 This is a family of proteins conserved in fungi. The function is not known, and there is no S. cerevisiae member.
Probab=67.39 E-value=3.4 Score=34.36 Aligned_cols=7 Identities=43% Similarity=0.420 Sum_probs=3.5
Q ss_pred HHHHhhh
Q 042526 253 EEERNLK 259 (284)
Q Consensus 253 ~e~~~~~ 259 (284)
+|++-.-
T Consensus 132 eesRss~ 138 (149)
T PF11595_consen 132 EESRSSL 138 (149)
T ss_pred hhhhHHH
Confidence 3555554
No 399
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=67.12 E-value=7.3 Score=41.51 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..+++|.|+||||||+... -++..+... .+++++|+=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l~~-~li~q~~~~---------------------~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLT-NLLMQVMAV---------------------HRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHHHH-HHHHHHHHh---------------------cCCEEEEEcCCCC
Confidence 3478999999999995543 333333321 2567888888776
No 400
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=67.04 E-value=3.8 Score=38.78 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
..++++.+++|+|||..
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999954
No 401
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=67.00 E-value=32 Score=35.96 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYA 119 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (284)
.++..-..|..+..+.+..-|.+.+-.++..+. -+++.|.-|-||+.+..|.+.. +....
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~------------------ 259 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA------------------ 259 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc------------------
Confidence 334344446666677776666666666633333 6889999999999998887732 22210
Q ss_pred CCCCeEEEEEecCHHHHHHHHHHHhhhhcCCC
Q 042526 120 PKGHLRALIINPTRELALQVLMVASPSLKSNS 151 (284)
Q Consensus 120 ~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~ 151 (284)
...+++|.+||.+=+..+..-+.+-...+|
T Consensus 260 --~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 260 --GSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred --CCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 146789999999887777666655444443
No 402
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.87 E-value=5.3 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
..+++.+|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999943
No 403
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=66.64 E-value=13 Score=35.48 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.=+++.+++|+|||.-
T Consensus 80 ~~GslvLI~G~pG~GKStL 98 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTL 98 (372)
T ss_pred cCCeEEEEEeCCCCCHHHH
Confidence 3467789999999999943
No 404
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=66.61 E-value=13 Score=36.41 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=16.9
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.+++.+++|+|||. .+-.+.+.+
T Consensus 142 npl~L~G~~G~GKTH-Ll~Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTH-LMQAAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHH-HHHHHHHHH
Confidence 469999999999994 333444444
No 405
>PRK06620 hypothetical protein; Validated
Probab=66.59 E-value=3.5 Score=36.11 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
+.+++.+|+|||||.-.
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999543
No 406
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=66.36 E-value=8.7 Score=31.24 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil 94 (284)
..|.-+++.++.|+||| +|+-.++
T Consensus 20 ~~~~~i~l~G~lGaGKT-tl~~~l~ 43 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKT-TLVQGLL 43 (133)
T ss_pred CCCCEEEEEcCCCCCHH-HHHHHHH
Confidence 45667889999999999 4444443
No 407
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.22 E-value=18 Score=34.17 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=41.7
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe-cC-HHHHHHHHHHHhhhhcCCC
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN-PT-RELALQVLMVASPSLKSNS 151 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~-PT-ReLa~Qi~~~~~~l~~~~~ 151 (284)
-+++.+.+|+|||.+.. =|.+.+.. .+-++|+.+ -| |+=|.....+ +++..|
T Consensus 141 Vil~vGVNG~GKTTTIa--KLA~~l~~---------------------~g~~VllaA~DTFRAaAiEQL~~---w~er~g 194 (340)
T COG0552 141 VILFVGVNGVGKTTTIA--KLAKYLKQ---------------------QGKSVLLAAGDTFRAAAIEQLEV---WGERLG 194 (340)
T ss_pred EEEEEecCCCchHhHHH--HHHHHHHH---------------------CCCeEEEEecchHHHHHHHHHHH---HHHHhC
Confidence 36788999999996643 22222232 244454444 44 7666544333 334456
Q ss_pred ceeEE-EeCC-C----cchHHHHHhcCCCcccc
Q 042526 152 LTLAM-AAGS-P----LLTSEHSNRRKPNKRKR 178 (284)
Q Consensus 152 i~v~~-~~G~-~----~~~q~~~l~~~~~i~v~ 178 (284)
+.+.. -.|. + +..-..+..++.|+++.
T Consensus 195 v~vI~~~~G~DpAaVafDAi~~Akar~~Dvvli 227 (340)
T COG0552 195 VPVISGKEGADPAAVAFDAIQAAKARGIDVVLI 227 (340)
T ss_pred CeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 65533 1333 3 22234455667777665
No 408
>PRK14974 cell division protein FtsY; Provisional
Probab=66.15 E-value=17 Score=34.21 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchHHhH
Q 042526 73 KDVIGAAETESGKTRAFG 90 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafl 90 (284)
.=+++.+++|+|||.+..
T Consensus 141 ~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 347889999999996543
No 409
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=66.14 E-value=6 Score=33.69 Aligned_cols=12 Identities=42% Similarity=0.326 Sum_probs=10.6
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
|-+.+++|||||
T Consensus 2 IgI~G~sgSGKT 13 (194)
T PF00485_consen 2 IGIAGPSGSGKT 13 (194)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 467899999999
No 410
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=66.07 E-value=3.2 Score=39.48 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=29.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH--H----cCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPAL--A----HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~i--l----~~G~dviv~A~TGSGKTla 88 (284)
.+.+|.+| .+.|+..|.+ .++-.-+|+.-+|.+ + ..|.=.++.+|||||||.-
T Consensus 231 ~i~sf~~m--Re~ilseL~N--~e~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTF 289 (514)
T KOG2373|consen 231 GIRSFTDM--REGILSELLN--TERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTF 289 (514)
T ss_pred hhhhHHHH--HHHHHHHHhh--hhhhhceeehhhhHHHHHhccCCCCceEEEecCCCCCceeE
Confidence 44555543 4444444432 222333355555654 1 2355679999999999943
No 411
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=66.02 E-value=4.4 Score=33.87 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
|+-+++++++|||||..
T Consensus 2 ~~~i~l~G~~gsGKst~ 18 (175)
T cd00227 2 GRIIILNGGSSAGKSSI 18 (175)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 67899999999999944
No 412
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=65.99 E-value=5.9 Score=39.24 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHH------HcCCCcEEEEccCCCCchHH
Q 042526 57 STSILKARIPAL------AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 57 pT~iQ~~aip~i------l~~G~dviv~A~TGSGKTla 88 (284)
-++||....+++ +..|.=+.+++|+|||||.-
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTL 48 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEI 48 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHH
Confidence 467888777665 24588899999999999943
No 413
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=65.74 E-value=12 Score=36.78 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+++.+++|+|||.-.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~ 111 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLL 111 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHH
Confidence 34678899999999999443
No 414
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.72 E-value=5.8 Score=40.48 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=42.5
Q ss_pred cccccCccccCcccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 25 NEAEISTEFDAWNELRLHPLLMKSIYK---LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 25 ~~~~~p~~~~~F~~l~L~~~Ll~~L~~---~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
++.-++.|-.+|+++|=-+.+-..|+. +...+|-.+....| ..-+-|++.+|+|.|||+.+
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi----~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI----SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC----CCCceEEEECCCCcchHHHH
Confidence 344467777899999866666666654 44555555555543 34578999999999999764
No 415
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.68 E-value=4.3 Score=37.88 Aligned_cols=21 Identities=14% Similarity=-0.097 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCchHHhHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLP 92 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllP 92 (284)
+-+++..+|+|||||-+.++-
T Consensus 57 lp~~LFyGPpGTGKTStalaf 77 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAF 77 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHH
Confidence 347899999999999766543
No 416
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=65.60 E-value=7.3 Score=36.54 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.3
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.+ |++-++||||||.+.
T Consensus 84 ~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 84 LNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HCCCCceEEeeCCCCCCCeEEE
Confidence 56765 577899999999886
No 417
>CHL00195 ycf46 Ycf46; Provisional
Probab=65.36 E-value=6.7 Score=38.91 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=29.3
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+-.+|++++=-..+.+.|...- ...+.+...+. + ...+.+++.+|+|||||+..
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~--~~~~~~~~~~g-l-~~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRS--TSFSKQASNYG-L-PTPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH--HHhhHHHHhcC-C-CCCceEEEECCCCCcHHHHH
Confidence 34456888754455555554310 00111111111 1 33578999999999999543
No 418
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.31 E-value=29 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.0
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
-+++++++|+|||.+.
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998543
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.21 E-value=7.9 Score=37.35 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.++-+++.+|+|+|||....
T Consensus 205 ~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46788999999999996544
No 420
>PLN02165 adenylate isopentenyltransferase
Probab=64.96 E-value=4.7 Score=37.99 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+++.+|||||||...
T Consensus 41 ~~g~iivIiGPTGSGKStLA 60 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLS 60 (334)
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 45777999999999999544
No 421
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=64.82 E-value=5 Score=31.66 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+++|||||.
T Consensus 9 ~~g~~~~i~G~nGsGKSt 26 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKST 26 (137)
T ss_dssp ETTSEEEEEESTTSSHHH
T ss_pred cCCCEEEEEccCCCcccc
Confidence 568889999999999993
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=64.44 E-value=4.3 Score=34.61 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+|+|||||.
T Consensus 3 ~~g~~i~i~G~sGsGKst 20 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKST 20 (205)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457889999999999993
No 423
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=64.35 E-value=5.3 Score=36.84 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=11.2
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
+++.+|||||||
T Consensus 2 i~i~G~t~~GKs 13 (287)
T TIGR00174 2 IFIMGPTAVGKS 13 (287)
T ss_pred EEEECCCCCCHH
Confidence 688999999999
No 424
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=64.32 E-value=5.1 Score=35.74 Aligned_cols=21 Identities=29% Similarity=0.162 Sum_probs=15.6
Q ss_pred EEccCCCCchHHhHHHHHHHHH
Q 042526 77 GAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 77 v~A~TGSGKTlafllPil~~l~ 98 (284)
|.+|.||||| +|+-.+-+++.
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHHT
T ss_pred CCCCCCCCHH-HHHHHHHHHHH
Confidence 4689999999 77777666553
No 425
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=64.27 E-value=2.2 Score=42.48 Aligned_cols=83 Identities=7% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHH------cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC-
Q 042526 60 ILKARIPALA------HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT- 132 (284)
Q Consensus 60 iQ~~aip~il------~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT- 132 (284)
-|..|+.++- ..|-||.+.+++|+||+ .|+.-+|...........+ -+.. ........|.+|.|-|-
T Consensus 12 GQ~RA~~Al~~gl~i~~~GYNIfv~G~~GtGr~-t~v~~~l~~~a~~~~~P~D-~cYV----~NF~~p~~P~~l~LpaG~ 85 (509)
T PF13654_consen 12 GQERAVEALEFGLGIRKPGYNIFVMGPPGTGRR-TYVRRFLEERAKKKPTPPD-WCYV----NNFDDPRKPKALSLPAGQ 85 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-cccc----cccccccccccccccccc
Confidence 3566665541 34889999999999998 5666666655443211000 0000 12234457888888776
Q ss_pred -HHHHHHHHHHHhhhhc
Q 042526 133 -RELALQVLMVASPSLK 148 (284)
Q Consensus 133 -ReLa~Qi~~~~~~l~~ 148 (284)
+.|...+...+..+..
T Consensus 86 G~~f~~~m~~lie~l~~ 102 (509)
T PF13654_consen 86 GKKFKKDMEELIEELKE 102 (509)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 5555555555555543
No 426
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=64.19 E-value=4.9 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=23.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
-.|+.+++.+.+||||| .|.|-+++.+..
T Consensus 8 ~~G~TLLIKG~PGTGKT-tfaLelL~~l~~ 36 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKT-TFALELLNSLKD 36 (484)
T ss_pred CCCcEEEEecCCCCCce-eeehhhHHHHhc
Confidence 45899999999999999 566677766554
No 427
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=64.18 E-value=4.1 Score=41.04 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCch
Q 042526 70 HQRKDVIGAAETESGKT 86 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKT 86 (284)
-+|++++|++|+|+|||
T Consensus 459 ~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKT 475 (659)
T ss_pred cCCCeEEEECCCCCchh
Confidence 67999999999999999
No 428
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.15 E-value=6.7 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.9
Q ss_pred cEEEEccCCCCchHHhHH
Q 042526 74 DVIGAAETESGKTRAFGL 91 (284)
Q Consensus 74 dviv~A~TGSGKTlafll 91 (284)
++|+.+|+|+|||.+.+.
T Consensus 50 ~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILC 67 (333)
T ss_pred ceEeeCCCCCchhhHHHH
Confidence 899999999999987654
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=64.14 E-value=8.8 Score=36.06 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++++++.+++|+|||..
T Consensus 62 ~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred hcCCcEEEEeCCCChHHHH
Confidence 6689999999999999943
No 430
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=64.03 E-value=5.2 Score=43.02 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=41.8
Q ss_pred ccccCcccCCCCHHHHHHHHHcCC---CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH--hHHHHHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGF---KESTSILKARIPALAHQRKDVIGAAETESGKTRA--FGLPALQ 95 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~---~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla--fllPil~ 95 (284)
..+.+|.++|.-...++.|++|-+ ..|.-+|...| ..-+.|+.++|+|||||+. ++.+.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i----tpPrgvL~~GppGTGkTl~araLa~~~s 324 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI----TPPRGVLFHGPPGTGKTLMARALAAACS 324 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc----CCCcceeecCCCCCchhHHHHhhhhhhc
Confidence 345679999988888888888643 33443443333 4467899999999999964 4444444
No 431
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=63.93 E-value=6 Score=32.85 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|+-+++.+++|+|||..
T Consensus 12 ~~g~gvLi~G~sG~GKStl 30 (149)
T cd01918 12 VGGIGVLITGPSGIGKSEL 30 (149)
T ss_pred ECCEEEEEEcCCCCCHHHH
Confidence 3588999999999999943
No 432
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=63.89 E-value=41 Score=27.87 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=45.7
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH----HHHHHHHHHhhhhc
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE----LALQVLMVASPSLK 148 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe----La~Qi~~~~~~l~~ 148 (284)
.-+++.+|.|+||+ .++.-++..++....... .+..-..-........|..+++.|... -..||......+..
T Consensus 20 ha~L~~G~~g~gk~-~~a~~~a~~ll~~~~~~~--~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 20 HALLFHGPSGSGKK-TLALAFARALLCSNPNED--PCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp SEEEEECSTTSSHH-HHHHHHHHHHC-TT-CTT----SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred eeEEEECCCCCCHH-HHHHHHHHHHcCCCCCCC--CCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 35799999999987 333444444443211000 000000000112245677888888854 56778866665543
Q ss_pred C---CCceeEEEeCCC
Q 042526 149 S---NSLTLAMAAGSP 161 (284)
Q Consensus 149 ~---~~i~v~~~~G~~ 161 (284)
. .+.+|.++....
T Consensus 97 ~~~~~~~KviiI~~ad 112 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEAD 112 (162)
T ss_dssp S-TTSSSEEEEEETGG
T ss_pred HHhcCCceEEEeehHh
Confidence 2 246788887664
No 433
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=63.82 E-value=6.6 Score=32.72 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.9
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
+++.+++|||||..
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999953
No 434
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=63.65 E-value=9 Score=37.39 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+++++.+|||+|||..
T Consensus 48 ~~ILLiGppG~GKT~l 63 (441)
T TIGR00390 48 KNILMIGPTGVGKTEI 63 (441)
T ss_pred ceEEEECCCCCCHHHH
Confidence 6899999999999943
No 435
>PLN02796 D-glycerate 3-kinase
Probab=63.48 E-value=11 Score=35.79 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=12.0
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
+-+.+++|||||..
T Consensus 103 IGI~G~sGSGKSTL 116 (347)
T PLN02796 103 IGISAPQGCGKTTL 116 (347)
T ss_pred EEEECCCCCcHHHH
Confidence 78889999999943
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=63.36 E-value=4.2 Score=32.84 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=11.4
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
+++.+|||||||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 5788999999994
No 437
>PF14516 AAA_35: AAA-like domain
Probab=62.98 E-value=19 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 59 SILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 59 ~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
|+...++-.+...|.-+.+.||-.+||| +.+.-+++++
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKT-Sll~~l~~~l 55 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKT-SLLLRLLERL 55 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHH-HHHHHHHHHH
Confidence 6888999888334999999999999999 4444444444
No 438
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=62.79 E-value=6.9 Score=36.35 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=26.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+|.++--.+.+++.|..+= +. +...- .....+++.+|+|+|||...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l-------~~-~~~~~-~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFI-------EA-AKKRG-EALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CHHHhcCcHHHHHHHHHHH-------HH-HHhcC-CCCCcEEEECCCCccHHHHH
Confidence 6777755666666554210 00 00000 12357999999999999543
No 439
>PRK05541 adenylylsulfate kinase; Provisional
Probab=62.64 E-value=8.2 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|||||.
T Consensus 5 ~~~~~I~i~G~~GsGKst 22 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTT 22 (176)
T ss_pred CCCCEEEEEcCCCCCHHH
Confidence 467789999999999984
No 440
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=62.58 E-value=20 Score=37.36 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=40.9
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHh---------cCCCccccccc
Q 042526 121 KGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNR---------RKPNKRKRTRK 181 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~---------~~~~i~v~~~~ 181 (284)
..+.+++|||.|..-|..+|..++.... .++++.+.-......... +.+.|+|.|.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 4567899999999999999999987654 678888875443333322 34666776655
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=62.51 E-value=4.7 Score=33.55 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
|+=+++.+|+|||||.
T Consensus 1 g~ii~l~G~~GsGKsT 16 (180)
T TIGR03263 1 GLLIVISGPSGVGKST 16 (180)
T ss_pred CcEEEEECCCCCCHHH
Confidence 4557899999999994
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=62.31 E-value=5.3 Score=33.28 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
|+-+++.+++|||||...
T Consensus 1 ~~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLL 18 (179)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345789999999999543
No 443
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.28 E-value=5.6 Score=35.65 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCc-hHHhHH
Q 042526 70 HQRKDVIGAAETESGK-TRAFGL 91 (284)
Q Consensus 70 ~~G~dviv~A~TGSGK-Tlafll 91 (284)
..|.-..+.+|+|||| ||+|.|
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i 50 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTI 50 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 4466668889999999 466654
No 444
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=62.22 E-value=8.1 Score=30.99 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=17.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..|.=|++.++-|+||| +|.=.++.
T Consensus 13 ~~g~vi~L~GdLGaGKT-tf~r~l~~ 37 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKT-TFVRGLAR 37 (123)
T ss_dssp SS-EEEEEEESTTSSHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHH-HHHHHHHH
Confidence 55666788999999999 55444443
No 445
>PRK10689 transcription-repair coupling factor; Provisional
Probab=62.09 E-value=20 Score=39.34 Aligned_cols=92 Identities=9% Similarity=-0.072 Sum_probs=62.6
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----Hhc-CCCcccccc---cCCccccccccCCC
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRR-KPNKRKRTR---KGGEDEKLDSLKWN 194 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~-~~~i~v~~~---~~~~~d~l~~lv~d 194 (284)
+-+++|+||+++-+..++..+..+.. ++.+.++.|+....+... ++. ..+++++|. .+.++..+..++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 34799999999988888888877643 457777888855544322 333 466666663 44556677888877
Q ss_pred CCCcccccccccchhhhcccCCCCCC
Q 042526 195 PLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 195 EAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
.||+. | +++-+++.++.-|...
T Consensus 887 ~ad~f---g-laq~~Qr~GRvGR~g~ 908 (1147)
T PRK10689 887 RADHF---G-LAQLHQLRGRVGRSHH 908 (1147)
T ss_pred cCCCC---C-HHHHHHHhhccCCCCC
Confidence 77652 3 3677888888777653
No 446
>PRK05480 uridine/cytidine kinase; Provisional
Probab=61.74 E-value=7.7 Score=33.30 Aligned_cols=15 Identities=33% Similarity=0.104 Sum_probs=12.5
Q ss_pred CCcEEEEccCCCCch
Q 042526 72 RKDVIGAAETESGKT 86 (284)
Q Consensus 72 G~dviv~A~TGSGKT 86 (284)
+.-|.+.+++|||||
T Consensus 6 ~~iI~I~G~sGsGKT 20 (209)
T PRK05480 6 PIIIGIAGGSGSGKT 20 (209)
T ss_pred CEEEEEECCCCCCHH
Confidence 345778899999999
No 447
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=61.74 E-value=57 Score=30.00 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
+=+++.+++|||||.+.
T Consensus 7 ~~i~i~G~~GsGKtt~~ 23 (288)
T PRK05416 7 RLVIVTGLSGAGKSVAL 23 (288)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45889999999999654
No 448
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=61.69 E-value=8.1 Score=29.41 Aligned_cols=12 Identities=25% Similarity=0.471 Sum_probs=11.1
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
|++.++.|+|||
T Consensus 2 I~V~G~~g~GKT 13 (119)
T PF08477_consen 2 IVVLGDSGVGKT 13 (119)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 688999999999
No 449
>PRK08118 topology modulation protein; Reviewed
Probab=61.65 E-value=4.9 Score=33.65 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.4
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+++|||||.
T Consensus 3 rI~I~G~~GsGKST 16 (167)
T PRK08118 3 KIILIGSGGSGKST 16 (167)
T ss_pred EEEEECCCCCCHHH
Confidence 48899999999994
No 450
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=61.52 E-value=47 Score=30.01 Aligned_cols=19 Identities=21% Similarity=0.018 Sum_probs=15.2
Q ss_pred CCc-EEEEccCCCCchHHhH
Q 042526 72 RKD-VIGAAETESGKTRAFG 90 (284)
Q Consensus 72 G~d-viv~A~TGSGKTlafl 90 (284)
+.. +++.+|+|+|||.+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL 42 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH
Confidence 445 8999999999996543
No 451
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.48 E-value=22 Score=36.17 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=75.1
Q ss_pred ccccccCccccCcccC--CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 24 VNEAEISTEFDAWNEL--RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 24 ~~~~~~p~~~~~F~~l--~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
|.-.-+|..-..+-++ ++.+.--.++.+.|....+..|..++..+ +. |.++|-.|+.+.+....
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~-L~-------------~~~~~~~~~~~~~~~~~ 418 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAA-LA-------------KSLCYNVPVFEELCKDT 418 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHH-hh-------------hccccccHHHHHHHhcc
Confidence 3333444444444444 68888888999999999999999999888 32 45788888887666542
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC--CceeEEEeCCCcch
Q 042526 102 EKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN--SLTLAMAAGSPLLT 164 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~--~i~v~~~~G~~~~~ 164 (284)
.-.+|++.||..||..+.+.+..|.+.+ ++...++.|.....
T Consensus 419 ---------------------~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K 462 (1034)
T KOG4150|consen 419 ---------------------NSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYK 462 (1034)
T ss_pred ---------------------cceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcC
Confidence 3468999999999999988888887743 44455666654333
No 452
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=61.17 E-value=4.8 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.1
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++.++||||||.+.
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HcCccceEEEeCCCCCCceEEe
Confidence 66765 578899999999874
No 453
>PRK07261 topology modulation protein; Provisional
Probab=61.00 E-value=5.6 Score=33.39 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.5
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+++.+++|||||..
T Consensus 2 ri~i~G~~GsGKSTl 16 (171)
T PRK07261 2 KIAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEEcCCCCCHHHH
Confidence 378999999999943
No 454
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=60.95 E-value=9.9 Score=31.97 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
.....|++.+++||||++.
T Consensus 20 ~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TSTS-EEEECSTTSSHHHH
T ss_pred CCCCCEEEEcCCCCcHHHH
Confidence 5567999999999999954
No 455
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=60.86 E-value=28 Score=33.74 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
-.|+-.++.||.|+|||.
T Consensus 167 GkGQR~lIvgppGvGKTT 184 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTV 184 (416)
T ss_pred ccCceEEEeCCCCCChhH
Confidence 568889999999999993
No 456
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=60.81 E-value=5.5 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=12.3
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
=.++.|++|+|||..+
T Consensus 21 ~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 21 LNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567899999999443
No 457
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=60.78 E-value=9.8 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 119 APKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 119 ~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
.....|++|||+|+|.-|.++.+.+-.++..
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~ 63 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPP 63 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCc
Confidence 3456799999999999999999998887764
No 458
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=60.68 E-value=14 Score=30.21 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=11.0
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
+.+.+++|+|||.
T Consensus 2 i~~~G~~GsGKTt 14 (148)
T cd03114 2 IGITGVPGAGKST 14 (148)
T ss_pred EEEECCCCCcHHH
Confidence 5678999999994
No 459
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=60.46 E-value=9.3 Score=33.33 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchHHhHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~ 96 (284)
-+-+.+|.||||| +.+.-++..
T Consensus 15 ~i~v~Gp~GSGKT-aLie~~~~~ 36 (202)
T COG0378 15 RIGVGGPPGSGKT-ALIEKTLRA 36 (202)
T ss_pred EEEecCCCCcCHH-HHHHHHHHH
Confidence 5677899999999 333333333
No 460
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=60.37 E-value=23 Score=36.15 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++++++.+++|+|||..
T Consensus 35 ~~~~~~ll~G~pG~GKT~l 53 (608)
T TIGR00764 35 KQKRNVLLIGEPGVGKSML 53 (608)
T ss_pred HcCCCEEEECCCCCCHHHH
Confidence 5678999999999999943
No 461
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=60.34 E-value=4.9 Score=32.92 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=10.6
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
+++.+++|||||
T Consensus 1 i~l~G~~GsGKS 12 (163)
T TIGR01313 1 FVLMGVAGSGKS 12 (163)
T ss_pred CEEECCCCCCHH
Confidence 468899999998
No 462
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=60.18 E-value=7.7 Score=38.83 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHH-------HcCCCc--EEEEccCCCCchHHh
Q 042526 55 KESTSILKARIPAL-------AHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 55 ~~pT~iQ~~aip~i-------l~~G~d--viv~A~TGSGKTlaf 89 (284)
..|+.-|.++...+ ++.|.+ |+..++||||||.+.
T Consensus 57 F~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm 100 (607)
T KOG0240|consen 57 FSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTM 100 (607)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceee
Confidence 35777666655322 256664 677788999999653
No 463
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=60.15 E-value=5.6 Score=36.92 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=17.7
Q ss_pred HHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 65 IPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 65 ip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
++.+ +.|.| +++.++||||||.+.
T Consensus 73 v~~~-~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 73 VPHL-LSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHH-hCCCceEEEEECCCCCCCcEEE
Confidence 3344 67876 466689999999876
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=60.12 E-value=6.5 Score=30.79 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCCchHHhHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGL 91 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafll 91 (284)
..|.-+.+.+|+|||||....+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHH
Confidence 4567789999999999965443
No 465
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=59.97 E-value=15 Score=33.84 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=18.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..+.-+.+.+++|+||| +++.-+..
T Consensus 32 ~~~~~i~i~G~~G~GKt-tl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKS-TLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHH-HHHHHHHH
Confidence 35778899999999999 44444433
No 466
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=59.92 E-value=5.5 Score=35.45 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 29 ~~Ge~vaI~GpSGSGKST 46 (226)
T COG1136 29 EAGEFVAIVGPSGSGKST 46 (226)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 678889999999999983
No 467
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.79 E-value=5.1 Score=38.99 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=27.9
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 36 F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|...=|||.|-..|..+-+.+-..--.+ .--||++..+|+|+|||++.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~------apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQ------APFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccccc------chhhheeeeCCCCCCchHHH
Confidence 5555577777666655432211110000 01379999999999999654
No 468
>PRK04195 replication factor C large subunit; Provisional
Probab=59.76 E-value=9.7 Score=37.49 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=27.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+|.++-.++..+..|...= ..|..- ...+.+++.+|+|+|||..
T Consensus 12 ~l~dlvg~~~~~~~l~~~l---------~~~~~g-~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWI---------ESWLKG-KPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CHHHhcCCHHHHHHHHHHH---------HHHhcC-CCCCeEEEECCCCCCHHHH
Confidence 5777777777777665420 111111 1156899999999999944
No 469
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=59.52 E-value=53 Score=30.07 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=35.4
Q ss_pred EEEEccCCCCchHHh-----------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 75 VIGAAETESGKTRAF-----------------GLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 75 viv~A~TGSGKTlaf-----------------llPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
|||.+-+|+|||.|. ++|-+..+... .......+-+.|=+-+|+...
T Consensus 4 vIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~~----------------~~~~~~kvAv~iDiRs~~~~~ 67 (286)
T COG1660 4 VIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLMLT----------------LESRITKVAVVIDVRSREFFG 67 (286)
T ss_pred EEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHhh----------------cccCCceEEEEEecccchhHH
Confidence 789999999999873 23333322211 111122333444457788888
Q ss_pred HHHHHHhhhhcC
Q 042526 138 QVLMVASPSLKS 149 (284)
Q Consensus 138 Qi~~~~~~l~~~ 149 (284)
++...+..+...
T Consensus 68 ~l~~~l~~l~~~ 79 (286)
T COG1660 68 DLEEVLDELKDN 79 (286)
T ss_pred HHHHHHHHHHhc
Confidence 888888777655
No 470
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=59.47 E-value=13 Score=39.49 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
..+++|.|+||+|||..
T Consensus 438 n~N~~I~G~sGsGKS~l 454 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFF 454 (829)
T ss_pred cCceEEECCCCCCHHHH
Confidence 46889999999999943
No 471
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=59.45 E-value=6.2 Score=37.15 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=15.9
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.+ |++-++||||||.+.
T Consensus 85 l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 85 LKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred hCCCceEEEEeCCCCCCCeEEe
Confidence 66765 566799999999885
No 472
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=59.44 E-value=9.2 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.094 Sum_probs=17.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
+.|+.+++.+++|+|||..
T Consensus 41 ~~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HcCCCEEEECCCCccHHHH
Confidence 7899999999999999943
No 473
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=59.42 E-value=6.3 Score=37.18 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.1
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++.++||||||.+.
T Consensus 85 l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 85 FEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred hCCCceEEEEecCCCCCCeEEe
Confidence 67775 567799999999865
No 474
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=59.29 E-value=5.9 Score=37.15 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=15.8
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEe
Confidence 67776 567789999999665
No 475
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=59.22 E-value=18 Score=37.57 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=33.8
Q ss_pred CcccCCC-CHHHHHHHHHcCCC----CCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHhH
Q 042526 35 AWNELRL-HPLLMKSIYKLGFK----ESTSILKARIPALAHQ--RKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 35 ~F~~l~L-~~~Ll~~L~~~g~~----~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlafl 90 (284)
.|..+++ ++..++........ +++.+=..|+..++.. .+.||+.+.+|+|||.+.=
T Consensus 42 Pyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 42 PYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 3444543 56666554433222 2344556666665333 4579999999999997753
No 476
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=59.14 E-value=17 Score=33.21 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=16.5
Q ss_pred EEEccCCCCchHHhHHHHHHHHHH
Q 042526 76 IGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 76 iv~A~TGSGKTlafllPil~~l~~ 99 (284)
++.++.|+|||...++-++..+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~ 24 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT 24 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS
T ss_pred CCcCCccccHHHHHHHHHHHHHhh
Confidence 456889999999888777776554
No 477
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=59.05 E-value=64 Score=30.16 Aligned_cols=98 Identities=15% Similarity=0.003 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHc-CC---CcEEEEccCCCCchHHhHHHHHHHHHHHHHH---HHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 58 TSILKARIPALAH-QR---KDVIGAAETESGKTRAFGLPALQRLLEEREK---AAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 58 T~iQ~~aip~il~-~G---~dviv~A~TGSGKTlafllPil~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
+|.|..+|..+.. .| .-+++.+|.|+|||.... -+...+.-.... ..+..+ ..=........|-..++.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~-~~a~~llC~~~~~~~~~Cg~C---~~C~~~~~~~HpD~~~~~ 78 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR-FAAQALLCETPAPGHKPCGEC---MSCHLFGQGSHPDFYEIT 78 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCcC---HHHHHHhcCCCCCEEEEe
Confidence 4556666666521 22 368899999999984432 222222211000 000000 000011234567788888
Q ss_pred cCH-----------HHHHHHHHHHhhhhc---CCCceeEEEeC
Q 042526 131 PTR-----------ELALQVLMVASPSLK---SNSLTLAMAAG 159 (284)
Q Consensus 131 PTR-----------eLa~Qi~~~~~~l~~---~~~i~v~~~~G 159 (284)
|+. --+.||......+.. ..+.+|.++--
T Consensus 79 p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp 121 (325)
T PRK08699 79 PLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHP 121 (325)
T ss_pred cccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEec
Confidence 852 246677776555432 23466766543
No 478
>PRK09354 recA recombinase A; Provisional
Probab=59.03 E-value=19 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil 94 (284)
-.|+-+.+.+|+|||||.- ++.++
T Consensus 58 p~G~IteI~G~~GsGKTtL-al~~~ 81 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTL-ALHAI 81 (349)
T ss_pred cCCeEEEEECCCCCCHHHH-HHHHH
Confidence 3467888999999999954 44443
No 479
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=58.99 E-value=11 Score=28.86 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=16.0
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~~ 99 (284)
|.+.+++|+|||...- .++..+..
T Consensus 1 I~i~G~~G~GKS~l~~-~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK-ELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4678999999995433 34444444
No 480
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=58.79 E-value=6.4 Score=36.61 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=13.1
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.=+++++|||||||..
T Consensus 5 ~~i~i~GptgsGKt~l 20 (307)
T PRK00091 5 KVIVIVGPTASGKTAL 20 (307)
T ss_pred eEEEEECCCCcCHHHH
Confidence 4578999999999943
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.75 E-value=12 Score=34.49 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=31.9
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|=.+|++.|=..+-++.|++. -.-+|-.+-...| -.-+.|++-+|+||||||+.
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgi----dppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI----DPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC----CCCCceEEeCCCCCchhHHH
Confidence 334677777666666666542 2222222211111 33467999999999999875
No 482
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=58.69 E-value=17 Score=33.77 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-C--CcEEEEccCCCCchH
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQ-R--KDVIGAAETESGKTR 87 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~-G--~dviv~A~TGSGKTl 87 (284)
|...+.++|.+.++..+++- ...|..+ .. . --+++.+++|||||.
T Consensus 60 l~~~V~~~L~~~~~~~~~~~-y~~~~~i-~~~~~p~iIlI~G~sgsGKSt 107 (301)
T PRK04220 60 LRRRVYYKLIEKDYEEVAEK-YLLWRRI-RKSKEPIIILIGGASGVGTST 107 (301)
T ss_pred HHHHHHHHHHHhCcHhHHHH-HHHHHHH-hcCCCCEEEEEECCCCCCHHH
Confidence 44556677777777665432 3333333 22 1 257889999999995
No 483
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=58.66 E-value=10 Score=34.54 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHcCC--CcEEEEccCCCCchHH
Q 042526 62 KARIPALAHQR--KDVIGAAETESGKTRA 88 (284)
Q Consensus 62 ~~aip~il~~G--~dviv~A~TGSGKTla 88 (284)
...++.+...+ .++++.++||+|||..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 33455553334 6889999999999943
No 484
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=58.54 E-value=11 Score=32.34 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil 94 (284)
..|+-+++.+|+|+|||. |+-.+.
T Consensus 27 ~~~~~~~l~G~Ng~GKSt-ll~~i~ 50 (202)
T cd03243 27 GSGRLLLITGPNMGGKST-YLRSIG 50 (202)
T ss_pred cCCeEEEEECCCCCccHH-HHHHHH
Confidence 445678999999999994 443333
No 485
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=58.53 E-value=11 Score=34.63 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=32.6
Q ss_pred ccccCcccC-CCCHHHHHHHHHc--CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhH
Q 042526 31 TEFDAWNEL-RLHPLLMKSIYKL--GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 31 ~~~~~F~~l-~L~~~Ll~~L~~~--g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafl 90 (284)
.|..+|+++ ||...|.+-+... -.+++-.+-..-| ..-+.++.-+|+|+|||+..-
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMAR 223 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHH
Confidence 455778888 4766655544431 2222222221111 335689999999999997543
No 486
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=58.42 E-value=12 Score=34.91 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=17.2
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..+..|++.+++||||+...
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 66889999999999998543
No 487
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.34 E-value=5.4 Score=38.50 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=34.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCC-CCCc--------------HHHHHH-H----HHHHcCC-----CcEEEEccCCCCch
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGF-KEST--------------SILKAR-I----PALAHQR-----KDVIGAAETESGKT 86 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~-~~pT--------------~iQ~~a-i----p~il~~G-----~dviv~A~TGSGKT 86 (284)
....|..++....|+++|..-=+ .+|. -++.++ + |.+ +.| +.|+..+|+|||||
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~-F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEF-FKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHH-HhhcccccceeeeeCCCCCcHH
Confidence 45668888888899988865111 1111 122222 2 333 333 58999999999999
Q ss_pred HH
Q 042526 87 RA 88 (284)
Q Consensus 87 la 88 (284)
+-
T Consensus 260 lL 261 (491)
T KOG0738|consen 260 LL 261 (491)
T ss_pred HH
Confidence 64
No 488
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=58.33 E-value=3.3 Score=39.70 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEE 100 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~ 100 (284)
+-.++.+..|||||.+++.-++..++..
T Consensus 3 r~~v~~GGrGS~KS~~~a~~li~~~~~~ 30 (387)
T PF04466_consen 3 RYIVLKGGRGSGKSSFIAQKLILRAMQY 30 (387)
T ss_dssp ----------------------------
T ss_pred cEEEEECCCCchHHHHHHHHHHHHHHhC
Confidence 3457788899999999888887776554
No 489
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=58.16 E-value=25 Score=35.96 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=16.3
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHH
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l 97 (284)
+.+++.+++|+|||. .+..+.+.+
T Consensus 315 NpL~LyG~sGsGKTH-LL~AIa~~a 338 (617)
T PRK14086 315 NPLFIYGESGLGKTH-LLHAIGHYA 338 (617)
T ss_pred CcEEEECCCCCCHHH-HHHHHHHHH
Confidence 358999999999993 223444433
No 490
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=58.06 E-value=4.6 Score=40.01 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=14.9
Q ss_pred CcEEEEccCC-------------CCchHHhHHHHH
Q 042526 73 KDVIGAAETE-------------SGKTRAFGLPAL 94 (284)
Q Consensus 73 ~dviv~A~TG-------------SGKTlafllPil 94 (284)
++|++..|.| -|||.=|=||.=
T Consensus 205 ~~i~~lTPRGRYdI~iy~t~lrL~GkTyDyKI~y~ 239 (615)
T KOG0526|consen 205 EEILCLTPRGRYDIKIYPTFLRLHGKTYDYKIPYK 239 (615)
T ss_pred eeeeeecCCccceeEEehhhhhhcccccceecchh
Confidence 4666666666 588887777753
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=58.05 E-value=9.1 Score=32.92 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.2
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
|.=+.+.+++|||||.
T Consensus 6 g~vi~I~G~sGsGKST 21 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTT 21 (207)
T ss_pred eEEEEEECCCCCCHHH
Confidence 4557789999999993
No 492
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=57.90 E-value=13 Score=39.17 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 74 DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
+.+|.|+||||||...-. ++..+... .+.+++|+
T Consensus 443 n~~I~G~tGsGKS~l~~~-l~~~~~~~---------------------~g~~v~i~ 476 (811)
T PRK13873 443 HTLVVGPTGAGKSVLLAL-MALQFRRY---------------------PGAQVFAF 476 (811)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhhhc---------------------CCCeEEEE
No 493
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=57.85 E-value=37 Score=30.93 Aligned_cols=89 Identities=16% Similarity=0.058 Sum_probs=0.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042526 36 WNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEA 115 (284)
Q Consensus 36 F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~ 115 (284)
|+.++++..+...+.-.-=.+--.++..-+-.. .++.=+.++++-|||||+.-- .++..+...
T Consensus 16 ~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~R-al~~s~~~d--------------- 78 (269)
T COG3267 16 FSRLPFSWDIQPGLDYWAADHNEALLMLHAAIA-DGQGILAVTGEVGSGKTVLRR-ALLASLNED--------------- 78 (269)
T ss_pred hccCCCccchhhhhhhhhhhhhHHHHHHHHHHh-cCCceEEEEecCCCchhHHHH-HHHHhcCCC---------------
Q ss_pred hhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 116 EKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 116 ~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
...-.+|-.||-..+.=+...+-.|.
T Consensus 79 ------~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 79 ------QVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred ------ceEEEEecCcchhHHHHHHHHHHHhc
No 494
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=57.84 E-value=9.7 Score=33.42 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHhHHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l 97 (284)
+-+.+++||||| +++--+...+
T Consensus 2 igI~G~sGSGKT-Tla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKS-TTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHH-HHHHHHHHHH
No 495
>PRK08233 hypothetical protein; Provisional
Probab=57.72 E-value=6.3 Score=32.63 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=0.0
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
|.+.+++|||||.
T Consensus 6 I~I~G~~GsGKtT 18 (182)
T PRK08233 6 ITIAAVSGGGKTT 18 (182)
T ss_pred EEEECCCCCCHHH
No 496
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=57.39 E-value=10 Score=35.41 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+..+..++-... ..+..|++.+++||||++..
T Consensus 8 m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 8 FLEVLEQVSRLA-PLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred HHHHHHHHHHHh-CCCCCEEEECCCCChHHHHH
No 497
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.38 E-value=7.9 Score=40.36 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred CcccCCCCHHHHHHHHH--cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 35 AWNELRLHPLLMKSIYK--LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~--~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+|.+..--.+...-|.+ .=+.+|-.+|..-+..- +.+++++|+||||||..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiP----kGvLL~GPPGTGKTLLA 361 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIP----KGVLLVGPPGTGKTLLA 361 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCc----CceEEECCCCCcHHHHH
No 498
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=57.36 E-value=6.5 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HcCCCcEEEEccCCCCchH
Q 042526 69 AHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTl 87 (284)
+..|.=+++++|+|||||.
T Consensus 25 v~~Gevv~iiGpSGSGKST 43 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST 43 (240)
T ss_pred EcCCCEEEEECCCCCCHHH
No 499
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=57.32 E-value=20 Score=32.79 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC----
Q 042526 75 VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN---- 150 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~---- 150 (284)
+++.+|+|+||| +++-.+...+... .+.+.++..-..++...+..+....
T Consensus 46 lll~G~~G~GKT-~la~~l~~~~~~~-------------------------~~~i~~~~~~~~~i~~~l~~~~~~~~~~~ 99 (316)
T PHA02544 46 LLHSPSPGTGKT-TVAKALCNEVGAE-------------------------VLFVNGSDCRIDFVRNRLTRFASTVSLTG 99 (316)
T ss_pred EEeeCcCCCCHH-HHHHHHHHHhCcc-------------------------ceEeccCcccHHHHHHHHHHHHHhhcccC
Q ss_pred CceeEEE
Q 042526 151 SLTLAMA 157 (284)
Q Consensus 151 ~i~v~~~ 157 (284)
+.++.++
T Consensus 100 ~~~vlii 106 (316)
T PHA02544 100 GGKVIII 106 (316)
T ss_pred CCeEEEE
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=57.30 E-value=11 Score=31.74 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred cEEEEccCCCCchHHhHHHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~~l 97 (284)
.+++.+++|+||| +.+.-+++.+
T Consensus 1 ~i~iTG~pG~GKT-Tll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKT-TLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHH-HHHHHHHHHH
T ss_pred CEEEECcCCCCHH-HHHHHHHHHh
Done!