Query 042526
Match_columns 284
No_of_seqs 242 out of 1755
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 6.8E-32 2.3E-36 238.2 11.0 186 21-222 16-211 (242)
2 2db3_A ATP-dependent RNA helic 100.0 1.1E-31 3.8E-36 256.5 13.3 178 22-215 44-231 (434)
3 3fmo_B ATP-dependent RNA helic 100.0 2.3E-30 8E-35 236.6 11.1 169 32-223 90-272 (300)
4 3iuy_A Probable ATP-dependent 100.0 7.7E-30 2.6E-34 222.5 10.2 180 25-220 10-200 (228)
5 2pl3_A Probable ATP-dependent 100.0 5.6E-29 1.9E-33 218.1 12.8 175 30-221 21-205 (236)
6 2oxc_A Probable ATP-dependent 100.0 3E-29 1E-33 219.6 10.7 176 24-220 14-200 (230)
7 3ber_A Probable ATP-dependent 100.0 3.4E-29 1.2E-33 222.6 10.6 171 30-221 39-220 (249)
8 1wrb_A DJVLGB; RNA helicase, D 100.0 2.6E-29 8.8E-34 222.7 7.6 181 22-214 9-201 (253)
9 3bor_A Human initiation factor 100.0 2.9E-29 9.9E-34 220.9 7.3 178 22-220 18-206 (237)
10 2i4i_A ATP-dependent RNA helic 100.0 2.4E-28 8.3E-33 229.3 13.7 189 23-214 4-202 (417)
11 1qde_A EIF4A, translation init 100.0 9.4E-29 3.2E-33 214.6 9.2 176 24-220 4-188 (224)
12 3ly5_A ATP-dependent RNA helic 100.0 1.5E-28 5.3E-33 220.0 10.6 171 34-221 52-235 (262)
13 1vec_A ATP-dependent RNA helic 99.9 3.6E-28 1.2E-32 208.1 10.0 166 34-220 3-179 (206)
14 1q0u_A Bstdead; DEAD protein, 99.9 1.3E-28 4.4E-33 213.7 6.5 168 32-220 2-183 (219)
15 3dkp_A Probable ATP-dependent 99.9 2E-28 6.9E-33 215.7 7.7 173 23-215 14-206 (245)
16 1t6n_A Probable ATP-dependent 99.9 2.2E-27 7.5E-32 205.6 8.5 176 24-220 4-192 (220)
17 2gxq_A Heat resistant RNA depe 99.9 7.1E-27 2.4E-31 199.9 10.3 166 35-220 2-177 (207)
18 2j0s_A ATP-dependent RNA helic 99.9 1.8E-26 6E-31 216.6 10.8 173 27-220 30-212 (410)
19 3eiq_A Eukaryotic initiation f 99.9 2.9E-25 9.9E-30 207.8 10.9 182 18-220 24-216 (414)
20 3fmp_B ATP-dependent RNA helic 99.9 6.6E-25 2.3E-29 211.1 9.8 169 32-223 90-272 (479)
21 1s2m_A Putative ATP-dependent 99.9 1.1E-24 3.7E-29 203.6 9.1 172 28-220 15-196 (400)
22 1fuu_A Yeast initiation factor 99.9 8.1E-25 2.8E-29 203.3 7.0 172 28-220 15-195 (394)
23 3sqw_A ATP-dependent RNA helic 99.9 1.6E-24 5.4E-29 213.8 9.1 164 34-214 17-202 (579)
24 3fht_A ATP-dependent RNA helic 99.9 3.7E-24 1.3E-28 199.9 9.9 168 30-220 21-202 (412)
25 1xti_A Probable ATP-dependent 99.9 4.2E-24 1.4E-28 198.5 9.1 166 34-220 8-186 (391)
26 3pey_A ATP-dependent RNA helic 99.9 5.2E-24 1.8E-28 197.3 8.8 165 32-220 3-179 (395)
27 1hv8_A Putative ATP-dependent 99.9 1E-23 3.6E-28 193.4 9.9 167 32-220 4-180 (367)
28 3i5x_A ATP-dependent RNA helic 99.9 6.5E-24 2.2E-28 207.9 8.7 164 34-214 68-253 (563)
29 2z0m_A 337AA long hypothetical 99.9 5.4E-22 1.9E-26 180.2 11.1 153 41-220 1-162 (337)
30 1tf5_A Preprotein translocase 99.9 4.6E-22 1.6E-26 201.6 7.5 138 51-216 79-248 (844)
31 3oiy_A Reverse gyrase helicase 99.8 1.6E-21 5.6E-26 183.8 6.0 145 44-214 9-178 (414)
32 2fsf_A Preprotein translocase 99.8 6.2E-21 2.1E-25 193.1 5.4 127 52-206 71-214 (853)
33 4ddu_A Reverse gyrase; topoiso 99.8 5.6E-20 1.9E-24 193.6 8.4 139 51-215 74-236 (1104)
34 1gku_B Reverse gyrase, TOP-RG; 99.8 1E-19 3.5E-24 191.0 10.3 148 35-209 31-208 (1054)
35 2v1x_A ATP-dependent DNA helic 99.8 1.9E-19 6.6E-24 178.6 11.2 150 30-210 15-190 (591)
36 1nkt_A Preprotein translocase 99.8 4.2E-20 1.4E-24 187.6 6.4 138 51-216 107-276 (922)
37 2va8_A SSO2462, SKI2-type heli 99.8 3E-19 1E-23 180.1 12.0 150 33-207 7-165 (715)
38 2zj8_A DNA helicase, putative 99.8 2.4E-19 8.4E-24 181.0 10.5 148 35-207 2-158 (720)
39 3fho_A ATP-dependent RNA helic 99.8 1.7E-20 5.8E-25 182.5 0.6 168 29-220 114-293 (508)
40 1oyw_A RECQ helicase, ATP-depe 99.8 4.1E-19 1.4E-23 173.7 9.5 145 33-208 1-162 (523)
41 4a2p_A RIG-I, retinoic acid in 99.8 3.9E-19 1.3E-23 172.3 8.2 137 52-207 3-150 (556)
42 2ykg_A Probable ATP-dependent 99.8 9.3E-19 3.2E-23 175.2 11.0 137 45-200 2-149 (696)
43 3tbk_A RIG-I helicase domain; 99.8 9E-19 3.1E-23 169.2 10.3 129 56-203 4-143 (555)
44 2p6r_A Afuhel308 helicase; pro 99.7 3.7E-19 1.2E-23 179.3 5.0 145 35-206 2-157 (702)
45 2ipc_A Preprotein translocase 99.7 8.6E-19 2.9E-23 177.9 7.4 130 52-209 76-225 (997)
46 3l9o_A ATP-dependent RNA helic 99.7 4.8E-19 1.6E-23 186.6 4.8 153 33-219 161-322 (1108)
47 4a2q_A RIG-I, retinoic acid in 99.7 3.6E-18 1.2E-22 174.4 10.1 138 51-207 243-391 (797)
48 3b6e_A Interferon-induced heli 99.7 3.3E-18 1.1E-22 146.1 7.1 140 52-210 29-185 (216)
49 4f92_B U5 small nuclear ribonu 99.7 1.5E-17 5.2E-22 181.2 9.4 139 41-202 911-1061(1724)
50 1gm5_A RECG; helicase, replica 99.7 5E-17 1.7E-21 165.6 11.1 132 43-199 356-502 (780)
51 4a2w_A RIG-I, retinoic acid in 99.7 2.5E-17 8.7E-22 171.1 7.2 135 51-204 243-388 (936)
52 2whx_A Serine protease/ntpase/ 99.6 9.1E-18 3.1E-22 167.3 -3.6 142 36-214 151-303 (618)
53 4a4z_A Antiviral helicase SKI2 99.6 1.1E-15 3.6E-20 159.8 11.5 136 51-219 35-179 (997)
54 4gl2_A Interferon-induced heli 99.6 4.2E-16 1.4E-20 156.0 8.0 134 56-208 7-157 (699)
55 2xgj_A ATP-dependent RNA helic 99.6 3.6E-16 1.2E-20 163.4 7.6 125 49-208 80-213 (1010)
56 4f92_B U5 small nuclear ribonu 99.6 5.7E-16 1.9E-20 168.9 8.7 133 53-199 76-219 (1724)
57 3llm_A ATP-dependent RNA helic 99.6 1.5E-16 5E-21 139.6 0.8 137 53-212 58-202 (235)
58 2jlq_A Serine protease subunit 99.6 2.5E-16 8.5E-21 151.1 1.9 68 53-144 1-69 (451)
59 1rif_A DAR protein, DNA helica 99.6 3.9E-15 1.3E-19 133.7 8.4 121 56-201 113-239 (282)
60 2eyq_A TRCF, transcription-rep 99.6 1.5E-14 5.1E-19 153.1 12.9 136 39-199 586-737 (1151)
61 1wp9_A ATP-dependent RNA helic 99.6 8.4E-15 2.9E-19 137.6 9.7 123 56-202 9-140 (494)
62 2oca_A DAR protein, ATP-depend 99.6 6.4E-15 2.2E-19 142.3 8.9 122 55-201 112-239 (510)
63 2wv9_A Flavivirin protease NS2 99.5 8.8E-17 3E-21 161.6 -5.7 127 48-209 202-359 (673)
64 3o8b_A HCV NS3 protease/helica 99.5 2E-15 7E-20 150.9 0.8 129 57-221 217-351 (666)
65 3crv_A XPD/RAD3 related DNA he 99.5 7.3E-14 2.5E-18 137.2 9.9 81 53-160 1-84 (551)
66 2fwr_A DNA repair protein RAD2 99.5 1.1E-13 3.7E-18 132.4 9.2 124 43-205 62-210 (472)
67 2xau_A PRE-mRNA-splicing facto 99.4 1.2E-13 4.1E-18 140.9 8.7 149 30-203 68-225 (773)
68 2z83_A Helicase/nucleoside tri 99.4 4.4E-14 1.5E-18 135.8 3.6 119 53-209 6-139 (459)
69 2fz4_A DNA repair protein RAD2 99.4 1.3E-12 4.5E-17 114.9 11.0 110 56-204 93-209 (237)
70 1yks_A Genome polyprotein [con 99.4 3.1E-14 1.1E-18 136.2 -0.7 105 70-208 6-125 (440)
71 3rc3_A ATP-dependent RNA helic 99.3 9.2E-13 3.1E-17 132.4 5.6 137 42-215 130-267 (677)
72 4a15_A XPD helicase, ATP-depen 99.3 4.8E-12 1.6E-16 126.1 9.5 83 56-160 3-88 (620)
73 2v6i_A RNA helicase; membrane, 99.3 2.4E-12 8.3E-17 122.7 5.3 96 71-199 1-105 (431)
74 2vl7_A XPD; helicase, unknown 99.2 3.7E-11 1.3E-15 117.7 8.1 78 52-160 4-84 (540)
75 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 3.8E-11 1.3E-15 125.6 5.5 137 42-204 250-418 (1038)
76 3h1t_A Type I site-specific re 99.1 2.5E-11 8.4E-16 119.6 3.6 122 56-202 178-317 (590)
77 1w36_D RECD, exodeoxyribonucle 98.8 2.7E-09 9.4E-14 106.0 3.5 73 58-152 151-225 (608)
78 1z63_A Helicase of the SNF2/RA 98.7 1.2E-08 4.2E-13 97.9 6.0 121 55-203 36-165 (500)
79 3jux_A Protein translocase sub 98.6 1.2E-07 4E-12 95.3 9.0 81 52-159 72-152 (822)
80 1z3i_X Similar to RAD54-like; 98.4 7.1E-07 2.4E-11 89.0 9.8 128 56-201 55-206 (644)
81 3dmq_A RNA polymerase-associat 98.4 1.4E-07 4.7E-12 98.4 4.6 124 55-203 152-289 (968)
82 3mwy_W Chromo domain-containin 98.2 3E-06 1E-10 86.5 7.9 123 56-201 236-381 (800)
83 2xzl_A ATP-dependent helicase 97.0 0.0022 7.6E-08 65.5 9.8 69 55-146 359-427 (802)
84 4b3f_X DNA-binding protein smu 97.0 0.0018 6.2E-08 64.3 8.9 66 56-145 189-255 (646)
85 2gk6_A Regulator of nonsense t 97.0 0.0016 5.6E-08 64.5 8.4 69 55-146 179-247 (624)
86 1c4o_A DNA nucleotide excision 96.9 0.00073 2.5E-08 67.6 5.1 69 53-148 6-78 (664)
87 3upu_A ATP-dependent DNA helic 96.8 0.0031 1.1E-07 59.9 8.6 72 50-143 19-94 (459)
88 2wjy_A Regulator of nonsense t 96.8 0.0033 1.1E-07 64.2 8.7 68 56-146 356-423 (800)
89 3lfu_A DNA helicase II; SF1 he 96.7 0.0036 1.2E-07 61.6 8.4 72 55-148 8-79 (647)
90 3e1s_A Exodeoxyribonuclease V, 96.5 0.0072 2.5E-07 59.4 9.0 64 56-143 189-252 (574)
91 1uaa_A REP helicase, protein ( 96.4 0.0049 1.7E-07 61.3 7.0 71 56-148 2-72 (673)
92 1pjr_A PCRA; DNA repair, DNA r 95.8 0.016 5.6E-07 58.2 7.4 72 55-148 10-81 (724)
93 3u4q_A ATP-dependent helicase/ 95.7 0.016 5.6E-07 61.7 7.6 70 56-145 10-79 (1232)
94 3cpe_A Terminase, DNA packagin 94.6 0.094 3.2E-06 51.4 8.6 73 56-150 163-235 (592)
95 2d7d_A Uvrabc system protein B 94.4 0.042 1.4E-06 54.8 5.7 67 56-148 12-82 (661)
96 2o0j_A Terminase, DNA packagin 94.1 0.12 4.2E-06 48.1 7.8 71 56-148 163-233 (385)
97 3ec2_A DNA replication protein 93.1 0.2 6.7E-06 40.6 6.5 19 70-88 36-54 (180)
98 4b4t_M 26S protease regulatory 92.3 0.046 1.6E-06 51.8 1.8 55 30-88 174-231 (434)
99 3cf0_A Transitional endoplasmi 90.2 0.13 4.6E-06 45.6 2.6 57 31-88 9-65 (301)
100 3co5_A Putative two-component 89.6 0.29 9.8E-06 38.4 3.8 19 70-88 25-43 (143)
101 3h4m_A Proteasome-activating n 89.2 0.18 6.2E-06 43.8 2.6 53 32-88 12-67 (285)
102 1e9r_A Conjugal transfer prote 88.7 0.33 1.1E-05 45.2 4.2 45 70-137 51-95 (437)
103 3vkw_A Replicase large subunit 88.5 0.22 7.5E-06 47.3 2.8 45 73-145 162-206 (446)
104 4b4t_J 26S protease regulatory 88.5 0.13 4.5E-06 48.3 1.3 54 31-88 142-198 (405)
105 3jvv_A Twitching mobility prot 88.5 0.73 2.5E-05 42.3 6.3 19 70-88 121-139 (356)
106 3n70_A Transport activator; si 88.4 0.35 1.2E-05 37.9 3.6 20 70-89 22-41 (145)
107 4b4t_L 26S protease subunit RP 88.3 0.12 4.2E-06 49.0 0.9 54 31-88 175-231 (437)
108 2dr3_A UPF0273 protein PH0284; 87.5 0.65 2.2E-05 38.9 5.0 19 70-88 21-39 (247)
109 4b4t_H 26S protease regulatory 87.4 0.25 8.6E-06 47.2 2.4 54 31-88 203-259 (467)
110 2eyu_A Twitching motility prot 87.2 0.39 1.3E-05 42.0 3.4 40 30-88 2-41 (261)
111 1p9r_A General secretion pathw 87.1 0.62 2.1E-05 43.8 5.0 19 70-88 165-183 (418)
112 2zts_A Putative uncharacterize 86.6 0.62 2.1E-05 39.1 4.3 24 70-94 28-51 (251)
113 1xwi_A SKD1 protein; VPS4B, AA 86.5 0.83 2.8E-05 41.0 5.3 51 32-88 7-61 (322)
114 4b4t_I 26S protease regulatory 86.1 0.28 9.6E-06 46.4 2.0 54 31-88 176-232 (437)
115 2qz4_A Paraplegin; AAA+, SPG7, 86.0 0.38 1.3E-05 40.9 2.7 51 34-88 3-55 (262)
116 1lv7_A FTSH; alpha/beta domain 85.2 0.85 2.9E-05 39.0 4.5 52 33-88 8-61 (257)
117 4b4t_K 26S protease regulatory 84.7 0.26 8.9E-06 46.6 1.0 54 31-88 166-222 (428)
118 2oap_1 GSPE-2, type II secreti 84.6 0.79 2.7E-05 44.2 4.4 41 46-88 236-276 (511)
119 2w58_A DNAI, primosome compone 84.1 1.4 4.9E-05 35.9 5.3 16 73-88 55-70 (202)
120 1ixz_A ATP-dependent metallopr 84.1 0.3 1E-05 41.8 1.1 53 31-88 10-65 (254)
121 1u0j_A DNA replication protein 84.1 2 6.9E-05 37.9 6.5 44 43-90 73-122 (267)
122 3eie_A Vacuolar protein sortin 83.9 1.3 4.6E-05 39.3 5.4 51 32-88 13-67 (322)
123 3uk6_A RUVB-like 2; hexameric 83.5 1 3.5E-05 40.4 4.5 49 31-88 38-86 (368)
124 2x8a_A Nuclear valosin-contain 83.3 0.26 8.8E-06 43.4 0.3 54 32-88 5-60 (274)
125 1tue_A Replication protein E1; 83.1 1.5 5.3E-05 37.3 5.1 50 44-97 29-82 (212)
126 2kjq_A DNAA-related protein; s 82.9 1.1 3.7E-05 35.5 4.0 17 71-87 35-51 (149)
127 3hws_A ATP-dependent CLP prote 82.0 1.8 6.3E-05 39.0 5.6 18 71-88 50-67 (363)
128 3b9p_A CG5977-PA, isoform A; A 81.5 2.2 7.7E-05 37.0 5.8 51 32-88 16-70 (297)
129 1iy2_A ATP-dependent metallopr 80.9 0.46 1.6E-05 41.3 1.1 52 32-88 35-89 (278)
130 2w0m_A SSO2452; RECA, SSPF, un 80.5 1.7 5.8E-05 35.8 4.5 18 70-87 21-38 (235)
131 3bh0_A DNAB-like replicative h 80.3 3.3 0.00011 36.8 6.6 25 70-95 66-90 (315)
132 1jbk_A CLPB protein; beta barr 80.3 0.75 2.6E-05 36.3 2.1 17 72-88 43-59 (195)
133 2orw_A Thymidine kinase; TMTK, 79.7 2.3 7.8E-05 34.8 4.9 20 71-90 2-21 (184)
134 4a1f_A DNAB helicase, replicat 79.2 4 0.00014 37.1 6.8 27 70-97 44-70 (338)
135 3bos_A Putative DNA replicatio 79.1 0.9 3.1E-05 37.6 2.3 18 71-88 51-68 (242)
136 3d8b_A Fidgetin-like protein 1 78.5 2.6 8.8E-05 38.2 5.4 19 71-89 116-134 (357)
137 2bjv_A PSP operon transcriptio 78.5 1.5 5.1E-05 37.6 3.6 19 70-88 27-45 (265)
138 2r6a_A DNAB helicase, replicat 77.6 3.2 0.00011 38.9 5.9 27 70-97 201-227 (454)
139 2p65_A Hypothetical protein PF 77.5 0.77 2.6E-05 36.3 1.3 17 72-88 43-59 (187)
140 3b85_A Phosphate starvation-in 77.5 2.5 8.4E-05 35.5 4.6 34 54-88 5-38 (208)
141 1ofh_A ATP-dependent HSL prote 77.4 2.3 7.7E-05 36.8 4.5 18 71-88 49-66 (310)
142 2r62_A Cell division protease 77.4 0.98 3.3E-05 38.7 2.1 17 72-88 44-60 (268)
143 2qgz_A Helicase loader, putati 77.0 2.5 8.7E-05 37.6 4.8 17 72-88 152-168 (308)
144 3nbx_X ATPase RAVA; AAA+ ATPas 77.0 2.8 9.7E-05 40.2 5.3 42 45-88 16-57 (500)
145 4ag6_A VIRB4 ATPase, type IV s 76.8 2.4 8.2E-05 38.7 4.7 44 70-136 33-76 (392)
146 2zan_A Vacuolar protein sortin 76.8 0.73 2.5E-05 43.4 1.1 52 31-88 128-183 (444)
147 3bgw_A DNAB-like replicative h 76.6 3.1 0.00011 39.1 5.5 27 70-97 195-221 (444)
148 3syl_A Protein CBBX; photosynt 76.5 1.1 3.6E-05 39.2 2.0 18 72-89 67-84 (309)
149 2b8t_A Thymidine kinase; deoxy 76.5 2.4 8.1E-05 36.2 4.2 20 70-89 10-29 (223)
150 2c9o_A RUVB-like 1; hexameric 76.4 2.4 8.1E-05 39.8 4.6 49 32-89 32-80 (456)
151 3te6_A Regulatory protein SIR3 76.4 0.7 2.4E-05 41.8 0.8 19 71-89 44-62 (318)
152 2q6t_A DNAB replication FORK h 76.2 3.2 0.00011 38.8 5.4 27 70-97 198-224 (444)
153 3hjh_A Transcription-repair-co 75.1 2.1 7.1E-05 41.0 3.8 54 70-149 12-65 (483)
154 1kgd_A CASK, peripheral plasma 74.6 1.4 5E-05 35.5 2.3 18 70-87 3-20 (180)
155 3vfd_A Spastin; ATPase, microt 73.9 5.9 0.0002 36.1 6.5 53 33-88 111-164 (389)
156 1sxj_A Activator 1 95 kDa subu 73.8 3.8 0.00013 39.1 5.3 48 35-89 37-94 (516)
157 2qmh_A HPR kinase/phosphorylas 73.7 1.6 5.4E-05 37.0 2.3 17 70-86 32-48 (205)
158 3pfi_A Holliday junction ATP-d 73.7 4.7 0.00016 35.5 5.7 45 35-88 27-71 (338)
159 3iij_A Coilin-interacting nucl 73.5 1.3 4.6E-05 35.4 1.8 19 70-88 9-27 (180)
160 1xx6_A Thymidine kinase; NESG, 73.0 3.4 0.00012 34.3 4.2 41 70-133 6-46 (191)
161 3vkg_A Dynein heavy chain, cyt 73.0 3.1 0.00011 48.4 5.1 48 42-90 874-924 (3245)
162 2z43_A DNA repair and recombin 72.8 3 0.0001 37.2 4.1 19 70-88 105-123 (324)
163 1lvg_A Guanylate kinase, GMP k 72.7 1.6 5.5E-05 36.0 2.1 19 70-88 2-20 (198)
164 1ojl_A Transcriptional regulat 72.5 2.5 8.5E-05 37.5 3.5 19 70-88 23-41 (304)
165 2ewv_A Twitching motility prot 72.5 2.5 8.4E-05 38.8 3.5 19 70-88 134-152 (372)
166 3hu3_A Transitional endoplasmi 72.4 2 6.8E-05 41.1 2.9 52 34-89 201-255 (489)
167 2r44_A Uncharacterized protein 72.2 1.3 4.5E-05 39.2 1.6 19 70-88 44-62 (331)
168 2ze6_A Isopentenyl transferase 71.6 2.5 8.4E-05 36.4 3.2 14 74-87 3-16 (253)
169 1cr0_A DNA primase/helicase; R 71.6 2.7 9.2E-05 36.6 3.4 19 70-88 33-51 (296)
170 1l8q_A Chromosomal replication 71.5 1.9 6.4E-05 38.2 2.4 18 71-88 36-53 (324)
171 1xp8_A RECA protein, recombina 71.5 3.3 0.00011 38.0 4.1 27 70-97 72-98 (366)
172 2qby_B CDC6 homolog 3, cell di 71.5 7 0.00024 34.8 6.3 17 72-88 45-61 (384)
173 2chg_A Replication factor C sm 71.4 1.9 6.5E-05 34.8 2.3 16 73-88 39-54 (226)
174 3lda_A DNA repair protein RAD5 71.3 5.6 0.00019 36.9 5.7 27 30-56 80-106 (400)
175 3exa_A TRNA delta(2)-isopenten 71.2 1.7 5.9E-05 39.4 2.1 15 73-87 4-18 (322)
176 3vaa_A Shikimate kinase, SK; s 71.2 1.8 6.3E-05 35.4 2.1 19 70-88 23-41 (199)
177 1qhx_A CPT, protein (chloramph 70.8 1.9 6.7E-05 34.2 2.2 17 72-88 3-19 (178)
178 3foz_A TRNA delta(2)-isopenten 70.6 2 7E-05 38.8 2.4 14 74-87 12-25 (316)
179 1w36_B RECB, exodeoxyribonucle 70.6 4.6 0.00016 42.7 5.5 64 70-145 15-78 (1180)
180 1d2n_A N-ethylmaleimide-sensit 70.5 1.6 5.3E-05 37.6 1.6 17 72-88 64-80 (272)
181 2gza_A Type IV secretion syste 70.4 2.3 7.8E-05 38.8 2.8 19 69-87 172-190 (361)
182 1u94_A RECA protein, recombina 70.3 3.7 0.00013 37.5 4.2 26 70-96 61-86 (356)
183 1zp6_A Hypothetical protein AT 70.0 1.6 5.4E-05 35.1 1.5 18 70-87 7-24 (191)
184 3tr0_A Guanylate kinase, GMP k 70.0 2.1 7.2E-05 34.8 2.2 19 70-88 5-23 (205)
185 3cf2_A TER ATPase, transitiona 69.8 1.7 5.8E-05 44.3 1.9 58 28-89 468-528 (806)
186 1nlf_A Regulatory protein REPA 69.5 2.8 9.6E-05 36.3 3.1 20 70-89 28-47 (279)
187 1ex7_A Guanylate kinase; subst 69.4 1.8 6.2E-05 35.8 1.7 15 73-87 2-16 (186)
188 1kag_A SKI, shikimate kinase I 69.4 2.3 8E-05 33.5 2.4 18 71-88 3-20 (173)
189 1njg_A DNA polymerase III subu 69.2 2.9 0.0001 34.0 3.0 16 73-88 46-61 (250)
190 2v1u_A Cell division control p 69.2 1.9 6.6E-05 38.4 2.0 19 70-88 42-60 (387)
191 3tau_A Guanylate kinase, GMP k 69.2 2.2 7.5E-05 35.3 2.2 19 70-88 6-24 (208)
192 2j41_A Guanylate kinase; GMP, 68.9 2.3 7.8E-05 34.5 2.2 18 70-87 4-21 (207)
193 3d3q_A TRNA delta(2)-isopenten 68.8 2.5 8.6E-05 38.6 2.6 14 74-87 9-22 (340)
194 4akg_A Glutathione S-transfera 68.6 4.6 0.00016 46.4 5.2 49 41-90 890-941 (2695)
195 2hjv_A ATP-dependent RNA helic 68.5 16 0.00054 28.6 7.2 39 123-165 35-73 (163)
196 2qor_A Guanylate kinase; phosp 68.3 2.1 7.1E-05 35.2 1.9 18 70-87 10-27 (204)
197 2zr9_A Protein RECA, recombina 68.2 4.3 0.00015 36.9 4.1 25 70-95 59-83 (349)
198 3eph_A TRNA isopentenyltransfe 68.2 3 0.0001 39.1 3.1 13 74-86 4-16 (409)
199 3trf_A Shikimate kinase, SK; a 68.0 2.3 7.9E-05 34.0 2.0 17 72-88 5-21 (185)
200 3t15_A Ribulose bisphosphate c 67.6 2.1 7.1E-05 37.7 1.8 18 71-88 35-52 (293)
201 1hqc_A RUVB; extended AAA-ATPa 67.5 2.3 8E-05 37.2 2.1 45 35-88 10-54 (324)
202 1bg2_A Kinesin; motor protein, 67.4 3.5 0.00012 37.3 3.3 20 70-89 74-95 (325)
203 2z4s_A Chromosomal replication 67.3 7.5 0.00026 36.3 5.7 17 72-88 130-146 (440)
204 2pt7_A CAG-ALFA; ATPase, prote 66.9 2.4 8.4E-05 38.2 2.2 18 70-87 169-186 (330)
205 3a00_A Guanylate kinase, GMP k 66.9 2.7 9.2E-05 34.0 2.3 16 72-87 1-16 (186)
206 3lw7_A Adenylate kinase relate 66.9 2.3 7.9E-05 33.0 1.8 14 74-87 3-16 (179)
207 4gp7_A Metallophosphoesterase; 66.7 2.1 7.1E-05 34.4 1.5 21 70-90 7-27 (171)
208 1iqp_A RFCS; clamp loader, ext 66.6 4.8 0.00016 34.9 4.0 15 74-88 48-62 (327)
209 1g8p_A Magnesium-chelatase 38 66.6 2.8 9.7E-05 37.0 2.5 17 72-88 45-61 (350)
210 2qp9_X Vacuolar protein sortin 66.4 2.6 8.8E-05 38.2 2.2 52 31-88 45-100 (355)
211 3nwn_A Kinesin-like protein KI 66.3 3.6 0.00012 37.8 3.2 20 70-89 101-122 (359)
212 1ry6_A Internal kinesin; kines 66.3 3.5 0.00012 37.8 3.1 19 71-89 82-102 (360)
213 3hr8_A Protein RECA; alpha and 66.1 5 0.00017 36.7 4.1 27 70-97 59-85 (356)
214 1um8_A ATP-dependent CLP prote 66.0 2.8 9.5E-05 38.0 2.4 18 71-88 71-88 (376)
215 2chq_A Replication factor C sm 66.0 5.8 0.0002 34.3 4.4 40 35-88 15-54 (319)
216 1y63_A LMAJ004144AAA protein; 66.0 2.7 9.4E-05 33.9 2.1 19 70-88 8-26 (184)
217 2ce7_A Cell division protein F 65.5 1.8 6.2E-05 41.3 1.1 54 32-89 11-66 (476)
218 2ehv_A Hypothetical protein PH 65.4 4.2 0.00014 33.8 3.3 21 70-90 28-48 (251)
219 1np6_A Molybdopterin-guanine d 65.1 4.9 0.00017 32.7 3.5 21 74-95 8-28 (174)
220 1s96_A Guanylate kinase, GMP k 64.9 3 0.0001 35.2 2.2 19 70-88 14-32 (219)
221 1xjc_A MOBB protein homolog; s 64.7 5.1 0.00017 32.6 3.5 14 74-87 6-19 (169)
222 1kht_A Adenylate kinase; phosp 64.5 2.9 0.0001 33.3 2.0 16 72-87 3-18 (192)
223 3crm_A TRNA delta(2)-isopenten 64.4 3.2 0.00011 37.5 2.4 15 73-87 6-20 (323)
224 1z6g_A Guanylate kinase; struc 64.3 3.3 0.00011 34.6 2.4 19 70-88 21-39 (218)
225 4fcw_A Chaperone protein CLPB; 64.1 2.7 9.3E-05 36.5 1.9 17 73-89 48-64 (311)
226 1sxj_C Activator 1 40 kDa subu 63.9 7.9 0.00027 34.3 5.0 39 35-89 23-63 (340)
227 4eun_A Thermoresistant glucoki 63.9 3.3 0.00011 33.9 2.2 19 70-88 27-45 (200)
228 1znw_A Guanylate kinase, GMP k 63.7 3.3 0.00011 34.1 2.2 22 67-89 16-37 (207)
229 3ney_A 55 kDa erythrocyte memb 63.6 3.4 0.00012 34.6 2.3 18 70-87 17-34 (197)
230 1goj_A Kinesin, kinesin heavy 63.6 4.7 0.00016 36.9 3.4 20 70-89 77-98 (355)
231 4a14_A Kinesin, kinesin-like p 63.5 4.6 0.00016 36.8 3.3 20 70-89 80-101 (344)
232 3cm0_A Adenylate kinase; ATP-b 63.5 2.4 8.1E-05 33.9 1.2 18 71-88 3-20 (186)
233 3t0q_A AGR253WP; kinesin, alph 63.2 4.8 0.00017 36.7 3.4 25 64-89 77-103 (349)
234 2y65_A Kinesin, kinesin heavy 63.2 4.6 0.00016 37.1 3.3 20 70-89 81-102 (365)
235 4etp_A Kinesin-like protein KA 63.1 5 0.00017 37.4 3.6 25 64-89 132-158 (403)
236 1knq_A Gluconate kinase; ALFA/ 63.1 3 0.0001 33.0 1.8 18 71-88 7-24 (175)
237 3dc4_A Kinesin-like protein NO 63.1 4 0.00014 37.2 2.9 20 70-89 91-112 (344)
238 2h58_A Kinesin-like protein KI 62.9 4.8 0.00016 36.4 3.3 25 64-89 72-98 (330)
239 1sxj_E Activator 1 40 kDa subu 62.8 7.2 0.00025 34.5 4.5 42 35-89 12-53 (354)
240 3lre_A Kinesin-like protein KI 62.7 5 0.00017 36.7 3.4 20 70-89 102-123 (355)
241 1ly1_A Polynucleotide kinase; 62.5 3.1 0.00011 32.7 1.8 15 74-88 4-18 (181)
242 2cvh_A DNA repair and recombin 62.4 3.7 0.00013 33.5 2.3 20 70-89 18-37 (220)
243 2vvg_A Kinesin-2; motor protei 62.4 4.9 0.00017 36.7 3.3 20 70-89 86-107 (350)
244 3a8t_A Adenylate isopentenyltr 62.3 2.7 9.3E-05 38.3 1.5 16 72-87 40-55 (339)
245 1m7g_A Adenylylsulfate kinase; 62.2 5.5 0.00019 32.7 3.4 29 57-87 12-40 (211)
246 3kb2_A SPBC2 prophage-derived 62.0 3.3 0.00011 32.4 1.8 14 74-87 3-16 (173)
247 1sxj_D Activator 1 41 kDa subu 62.0 4.9 0.00017 35.4 3.2 16 73-88 59-74 (353)
248 3b6u_A Kinesin-like protein KI 61.9 4.9 0.00017 37.1 3.2 20 70-89 98-119 (372)
249 1x88_A Kinesin-like protein KI 61.6 4.8 0.00016 36.9 3.1 20 70-89 85-106 (359)
250 1ko7_A HPR kinase/phosphatase; 61.4 15 0.00051 33.0 6.3 49 41-89 92-162 (314)
251 2zfi_A Kinesin-like protein KI 61.3 5.2 0.00018 36.7 3.3 20 70-89 86-107 (366)
252 3cob_A Kinesin heavy chain-lik 61.3 4.3 0.00015 37.4 2.7 24 65-89 72-97 (369)
253 1v8k_A Kinesin-like protein KI 61.1 5.3 0.00018 37.3 3.3 20 70-89 151-172 (410)
254 2nr8_A Kinesin-like protein KI 61.0 5.2 0.00018 36.7 3.2 20 70-89 100-121 (358)
255 3gbj_A KIF13B protein; kinesin 60.8 5.3 0.00018 36.5 3.2 20 70-89 89-110 (354)
256 3u06_A Protein claret segregat 60.7 4.8 0.00016 37.6 3.0 25 64-89 130-156 (412)
257 1t5c_A CENP-E protein, centrom 60.6 5.4 0.00018 36.4 3.2 20 70-89 74-95 (349)
258 2qby_A CDC6 homolog 1, cell di 60.3 4 0.00014 36.2 2.3 18 71-88 44-61 (386)
259 3u4q_B ATP-dependent helicase/ 60.1 5.1 0.00017 42.2 3.3 48 76-144 5-52 (1166)
260 1fuk_A Eukaryotic initiation f 60.1 25 0.00087 27.3 6.9 39 123-165 30-68 (165)
261 1fnn_A CDC6P, cell division co 59.8 4 0.00014 36.4 2.2 15 74-88 46-60 (389)
262 1n0w_A DNA repair protein RAD5 59.7 5.5 0.00019 33.0 2.9 21 70-90 22-42 (243)
263 3fht_A ATP-dependent RNA helic 59.7 56 0.0019 28.8 10.0 39 123-165 266-304 (412)
264 2v54_A DTMP kinase, thymidylat 59.4 3.9 0.00013 33.0 1.9 19 70-88 2-20 (204)
265 2heh_A KIF2C protein; kinesin, 58.8 5.9 0.0002 36.7 3.2 20 70-89 131-152 (387)
266 3u61_B DNA polymerase accessor 58.7 10 0.00035 33.1 4.7 43 34-89 23-65 (324)
267 2rb4_A ATP-dependent RNA helic 58.6 18 0.00061 28.6 5.8 40 123-166 34-73 (175)
268 1jr3_A DNA polymerase III subu 58.6 12 0.00041 33.1 5.2 16 73-88 39-54 (373)
269 3bfn_A Kinesin-like protein KI 58.4 5.5 0.00019 37.0 2.9 20 70-89 95-116 (388)
270 4a74_A DNA repair and recombin 58.3 4 0.00014 33.5 1.8 20 70-89 23-42 (231)
271 2bdt_A BH3686; alpha-beta prot 58.3 3.3 0.00011 33.3 1.2 17 72-88 2-18 (189)
272 2rhm_A Putative kinase; P-loop 58.2 3.6 0.00012 32.9 1.4 18 71-88 4-21 (193)
273 3lnc_A Guanylate kinase, GMP k 58.0 3.8 0.00013 34.2 1.7 19 70-88 25-43 (231)
274 2cdn_A Adenylate kinase; phosp 57.3 3.9 0.00013 33.2 1.6 18 71-88 19-36 (201)
275 2r2a_A Uncharacterized protein 57.2 6.5 0.00022 32.7 3.0 15 74-88 7-21 (199)
276 2c95_A Adenylate kinase 1; tra 57.1 5 0.00017 32.1 2.2 19 70-88 7-25 (196)
277 2owm_A Nckin3-434, related to 56.6 6.9 0.00024 36.9 3.3 20 70-89 133-154 (443)
278 3c8u_A Fructokinase; YP_612366 56.5 4.8 0.00017 33.1 2.0 18 70-87 20-37 (208)
279 3uie_A Adenylyl-sulfate kinase 56.3 4.7 0.00016 32.9 1.9 30 57-88 12-41 (200)
280 3tqf_A HPR(Ser) kinase; transf 56.2 5.2 0.00018 33.2 2.1 18 70-87 14-31 (181)
281 1t5i_A C_terminal domain of A 55.9 27 0.00093 27.6 6.5 39 123-165 31-69 (172)
282 1yks_A Genome polyprotein [con 55.8 12 0.00041 34.8 4.8 54 123-180 177-231 (440)
283 1gvn_B Zeta; postsegregational 55.7 4.9 0.00017 35.3 2.0 17 72-88 33-49 (287)
284 3cmu_A Protein RECA, recombina 55.7 17 0.0006 40.7 6.7 20 71-90 1426-1445(2050)
285 2v6i_A RNA helicase; membrane, 55.5 11 0.00038 34.8 4.6 53 124-180 172-225 (431)
286 3kta_A Chromosome segregation 55.5 4.9 0.00017 32.0 1.8 15 74-88 28-42 (182)
287 4akg_A Glutathione S-transfera 55.5 6.6 0.00022 45.2 3.4 25 64-88 1259-1283(2695)
288 2zpa_A Uncharacterized protein 55.3 8.1 0.00028 38.4 3.7 61 56-143 175-237 (671)
289 1ak2_A Adenylate kinase isoenz 55.2 5.2 0.00018 33.5 2.0 18 70-87 14-31 (233)
290 3pxg_A Negative regulator of g 55.0 5.5 0.00019 37.5 2.4 18 71-88 200-217 (468)
291 3tif_A Uncharacterized ABC tra 54.7 5.1 0.00017 34.1 1.9 18 70-87 29-46 (235)
292 2plr_A DTMP kinase, probable t 54.6 5 0.00017 32.4 1.8 17 71-87 3-19 (213)
293 3nwj_A ATSK2; P loop, shikimat 54.6 6 0.00021 34.1 2.4 19 70-88 46-64 (250)
294 3eaq_A Heat resistant RNA depe 54.5 40 0.0014 27.6 7.5 38 124-165 32-69 (212)
295 1ye8_A Protein THEP1, hypothet 54.3 6.3 0.00022 32.0 2.3 15 74-88 2-16 (178)
296 1tev_A UMP-CMP kinase; ploop, 53.9 5.1 0.00017 31.9 1.7 17 72-88 3-19 (196)
297 3k1j_A LON protease, ATP-depen 53.8 8 0.00027 37.6 3.4 20 70-89 58-77 (604)
298 3pvs_A Replication-associated 53.6 5.3 0.00018 37.6 2.0 16 73-88 51-66 (447)
299 2qt1_A Nicotinamide riboside k 53.5 3.9 0.00013 33.4 1.0 18 70-87 19-36 (207)
300 1w4r_A Thymidine kinase; type 53.4 13 0.00044 31.1 4.1 18 71-88 19-36 (195)
301 3t61_A Gluconokinase; PSI-biol 53.4 5.6 0.00019 32.3 1.9 17 72-88 18-34 (202)
302 1aky_A Adenylate kinase; ATP:A 53.1 5.9 0.0002 32.7 2.0 17 71-87 3-19 (220)
303 1f9v_A Kinesin-like protein KA 53.1 5.8 0.0002 36.2 2.1 25 64-89 76-102 (347)
304 2pez_A Bifunctional 3'-phospho 53.0 5.7 0.0002 31.5 1.9 17 71-87 4-20 (179)
305 2ius_A DNA translocase FTSK; n 53.0 9.8 0.00034 36.6 3.8 20 70-89 165-184 (512)
306 1in4_A RUVB, holliday junction 53.0 6.6 0.00023 35.0 2.5 17 73-89 52-68 (334)
307 2j9r_A Thymidine kinase; TK1, 52.9 14 0.00049 31.2 4.4 41 71-134 27-67 (214)
308 1f2t_A RAD50 ABC-ATPase; DNA d 52.9 6 0.0002 31.0 1.9 14 75-88 26-39 (149)
309 3asz_A Uridine kinase; cytidin 52.7 5.6 0.00019 32.4 1.8 18 71-88 5-22 (211)
310 3f9v_A Minichromosome maintena 52.1 7.1 0.00024 38.1 2.7 15 74-88 329-343 (595)
311 1nks_A Adenylate kinase; therm 51.7 5.5 0.00019 31.6 1.6 14 74-87 3-16 (194)
312 2v9p_A Replication protein E1; 51.4 9.8 0.00033 34.0 3.3 18 70-87 124-141 (305)
313 3qf7_A RAD50; ABC-ATPase, ATPa 51.3 6 0.00021 36.0 1.9 16 74-89 25-40 (365)
314 2p6n_A ATP-dependent RNA helic 50.8 23 0.0008 28.7 5.4 38 124-165 55-92 (191)
315 1ypw_A Transitional endoplasmi 50.7 2.3 7.8E-05 43.2 -1.2 56 29-88 469-527 (806)
316 1q57_A DNA primase/helicase; d 50.6 6.1 0.00021 37.4 1.9 25 70-95 240-264 (503)
317 3fb4_A Adenylate kinase; psych 50.5 6.4 0.00022 32.2 1.8 15 74-88 2-16 (216)
318 2yvu_A Probable adenylyl-sulfa 50.4 6.7 0.00023 31.4 1.9 19 70-88 11-29 (186)
319 3m6a_A ATP-dependent protease 50.4 6.7 0.00023 37.7 2.2 18 71-88 107-124 (543)
320 4h1g_A Maltose binding protein 50.3 8.5 0.00029 38.4 3.0 25 64-89 454-480 (715)
321 2i3b_A HCR-ntpase, human cance 50.3 8.6 0.00029 31.6 2.6 18 72-89 1-18 (189)
322 1nn5_A Similar to deoxythymidy 50.3 7.2 0.00025 31.6 2.1 19 70-88 7-25 (215)
323 1zd8_A GTP:AMP phosphotransfer 50.3 6.8 0.00023 32.5 2.0 18 71-88 6-23 (227)
324 2px0_A Flagellar biosynthesis 50.1 8 0.00027 34.2 2.5 19 71-89 104-122 (296)
325 1g41_A Heat shock protein HSLU 50.0 7.6 0.00026 36.7 2.4 17 72-88 50-66 (444)
326 2iyv_A Shikimate kinase, SK; t 49.9 7.7 0.00026 30.8 2.2 16 73-88 3-18 (184)
327 3pxi_A Negative regulator of g 49.8 7 0.00024 39.0 2.3 18 71-88 200-217 (758)
328 1zak_A Adenylate kinase; ATP:A 49.7 7.1 0.00024 32.2 2.0 18 71-88 4-21 (222)
329 2wbe_C Bipolar kinesin KRP-130 49.7 6.4 0.00022 36.2 1.8 20 70-89 97-118 (373)
330 1knx_A Probable HPR(Ser) kinas 49.6 7.2 0.00024 35.1 2.1 20 70-89 145-165 (312)
331 1via_A Shikimate kinase; struc 49.6 7.4 0.00025 30.7 2.0 14 74-87 6-19 (175)
332 3dl0_A Adenylate kinase; phosp 49.2 6.9 0.00024 32.0 1.8 15 74-88 2-16 (216)
333 1qf9_A UMP/CMP kinase, protein 49.0 6.9 0.00024 31.0 1.7 16 73-88 7-22 (194)
334 2bwj_A Adenylate kinase 5; pho 48.9 8.2 0.00028 30.8 2.2 19 70-88 10-28 (199)
335 1e6c_A Shikimate kinase; phosp 48.9 7.3 0.00025 30.4 1.8 16 73-88 3-18 (173)
336 3dm5_A SRP54, signal recogniti 48.7 24 0.00083 33.2 5.7 17 73-89 101-117 (443)
337 3vkg_A Dynein heavy chain, cyt 48.7 9.9 0.00034 44.4 3.5 26 62-87 1294-1319(3245)
338 2h57_A ADP-ribosylation factor 48.4 6 0.00021 31.4 1.3 15 72-86 21-35 (190)
339 2cbz_A Multidrug resistance-as 47.9 8.6 0.00029 32.7 2.2 18 70-87 29-46 (237)
340 1sgw_A Putative ABC transporte 47.9 9.1 0.00031 32.1 2.4 19 70-88 33-51 (214)
341 3io5_A Recombination and repai 47.8 25 0.00087 31.8 5.4 26 71-98 28-53 (333)
342 1cke_A CK, MSSA, protein (cyti 47.8 7.8 0.00027 31.8 1.9 17 72-88 5-21 (227)
343 2wwf_A Thymidilate kinase, put 47.6 8.5 0.00029 31.1 2.1 18 70-87 8-25 (212)
344 1zuh_A Shikimate kinase; alpha 47.6 8 0.00027 30.2 1.9 16 73-88 8-23 (168)
345 2pcj_A ABC transporter, lipopr 47.6 7.4 0.00025 32.7 1.8 18 70-87 28-45 (224)
346 1ji0_A ABC transporter; ATP bi 47.4 7.7 0.00026 33.0 1.9 19 70-88 30-48 (240)
347 2if2_A Dephospho-COA kinase; a 47.4 7.8 0.00027 31.4 1.8 15 74-88 3-17 (204)
348 2fna_A Conserved hypothetical 47.3 38 0.0013 29.2 6.5 15 73-87 31-45 (357)
349 1a5t_A Delta prime, HOLB; zinc 47.2 12 0.00042 33.2 3.3 32 58-89 4-41 (334)
350 1g6h_A High-affinity branched- 47.2 7.8 0.00027 33.3 1.9 19 70-88 31-49 (257)
351 2rep_A Kinesin-like protein KI 47.1 7.4 0.00025 35.9 1.8 20 70-89 112-133 (376)
352 2vli_A Antibiotic resistance p 47.0 7.3 0.00025 30.7 1.6 18 71-88 4-21 (183)
353 2bbw_A Adenylate kinase 4, AK4 46.7 8.8 0.0003 32.3 2.1 18 71-88 26-43 (246)
354 1rj9_A FTSY, signal recognitio 46.6 10 0.00034 33.7 2.6 19 71-89 101-119 (304)
355 1ypw_A Transitional endoplasmi 46.4 7 0.00024 39.6 1.7 19 70-88 236-254 (806)
356 1b0u_A Histidine permease; ABC 46.4 8.2 0.00028 33.4 1.9 19 70-88 30-48 (262)
357 2pze_A Cystic fibrosis transme 46.4 9.4 0.00032 32.2 2.2 19 70-88 32-50 (229)
358 2ff7_A Alpha-hemolysin translo 46.2 9.3 0.00032 32.7 2.2 19 70-88 33-51 (247)
359 3kl4_A SRP54, signal recogniti 46.1 40 0.0014 31.5 6.7 18 72-89 97-114 (433)
360 3a4m_A L-seryl-tRNA(SEC) kinas 46.1 8 0.00027 33.1 1.8 16 72-87 4-19 (260)
361 1jjv_A Dephospho-COA kinase; P 46.0 8.6 0.00029 31.2 1.9 15 74-88 4-18 (206)
362 2ghi_A Transport protein; mult 46.0 9.5 0.00032 32.9 2.2 19 70-88 44-62 (260)
363 3be4_A Adenylate kinase; malar 46.0 8.6 0.00029 31.7 1.9 17 71-87 4-20 (217)
364 1ukz_A Uridylate kinase; trans 45.9 8.4 0.00029 31.1 1.8 16 73-88 16-31 (203)
365 2dhr_A FTSH; AAA+ protein, hex 45.6 8.4 0.00029 36.9 2.0 53 32-89 26-81 (499)
366 3auy_A DNA double-strand break 45.5 8.1 0.00028 35.0 1.8 15 74-88 27-41 (371)
367 3tlx_A Adenylate kinase 2; str 45.5 10 0.00034 32.1 2.3 17 71-87 28-44 (243)
368 2nq2_C Hypothetical ABC transp 45.3 8.7 0.0003 33.1 1.9 19 70-88 29-47 (253)
369 3e2i_A Thymidine kinase; Zn-bi 45.3 20 0.00069 30.5 4.1 42 70-134 26-67 (219)
370 3b9q_A Chloroplast SRP recepto 45.2 9.6 0.00033 33.8 2.2 19 71-89 99-117 (302)
371 2eyq_A TRCF, transcription-rep 45.2 6.4 0.00022 41.6 1.2 52 70-147 15-66 (1151)
372 2zu0_C Probable ATP-dependent 45.2 8.8 0.0003 33.3 1.9 19 70-88 44-62 (267)
373 2pt5_A Shikimate kinase, SK; a 45.1 8.9 0.00031 29.8 1.8 15 74-88 2-16 (168)
374 2jaq_A Deoxyguanosine kinase; 45.1 8.3 0.00028 30.8 1.6 14 74-87 2-15 (205)
375 1mv5_A LMRA, multidrug resista 45.0 8.8 0.0003 32.6 1.9 19 70-88 26-44 (243)
376 1r6b_X CLPA protein; AAA+, N-t 44.9 8.8 0.0003 38.2 2.1 18 71-88 206-223 (758)
377 3gfo_A Cobalt import ATP-bindi 44.9 10 0.00034 33.2 2.3 19 70-88 32-50 (275)
378 2p5t_B PEZT; postsegregational 44.8 7.1 0.00024 33.2 1.2 17 71-87 31-47 (253)
379 3qks_A DNA double-strand break 44.5 9.4 0.00032 31.5 1.9 15 74-88 25-39 (203)
380 1gtv_A TMK, thymidylate kinase 44.5 7.3 0.00025 31.6 1.2 13 75-87 3-15 (214)
381 1tf7_A KAIC; homohexamer, hexa 44.5 15 0.00051 35.0 3.5 28 70-97 37-64 (525)
382 2wv9_A Flavivirin protease NS2 44.4 24 0.00083 34.9 5.2 53 123-179 410-463 (673)
383 2qen_A Walker-type ATPase; unk 44.4 13 0.00044 32.3 2.9 18 70-87 29-46 (350)
384 1htw_A HI0065; nucleotide-bind 44.3 8.8 0.0003 30.6 1.6 18 70-87 31-48 (158)
385 2d2e_A SUFC protein; ABC-ATPas 44.0 11 0.00036 32.3 2.2 19 70-88 27-45 (250)
386 2h17_A ADP-ribosylation factor 43.8 7.5 0.00026 30.6 1.2 17 70-86 19-35 (181)
387 4g1u_C Hemin import ATP-bindin 43.7 11 0.00036 32.8 2.2 19 70-88 35-53 (266)
388 1zd9_A ADP-ribosylation factor 43.6 5.8 0.0002 31.6 0.4 31 56-86 6-36 (188)
389 2pbr_A DTMP kinase, thymidylat 43.5 9.7 0.00033 30.2 1.8 14 74-87 2-15 (195)
390 2yz2_A Putative ABC transporte 43.1 11 0.00038 32.5 2.2 19 70-88 31-49 (266)
391 3sr0_A Adenylate kinase; phosp 42.9 9.4 0.00032 31.8 1.7 14 74-87 2-15 (206)
392 2iut_A DNA translocase FTSK; n 42.9 18 0.0006 35.3 3.8 19 72-90 214-232 (574)
393 4e22_A Cytidylate kinase; P-lo 42.8 11 0.00038 32.0 2.2 19 70-88 25-43 (252)
394 2qi9_C Vitamin B12 import ATP- 42.7 11 0.00039 32.3 2.2 19 70-88 24-42 (249)
395 1vpl_A ABC transporter, ATP-bi 42.6 12 0.00039 32.4 2.3 19 70-88 39-57 (256)
396 1r6b_X CLPA protein; AAA+, N-t 42.3 14 0.00046 36.8 3.0 16 74-89 490-505 (758)
397 1rz3_A Hypothetical protein rb 42.3 10 0.00034 30.9 1.7 18 71-88 21-38 (201)
398 1qvr_A CLPB protein; coiled co 42.2 14 0.00047 37.5 3.1 16 72-87 191-206 (854)
399 1ek0_A Protein (GTP-binding pr 41.9 16 0.00054 27.8 2.8 13 74-86 5-17 (170)
400 2ixe_A Antigen peptide transpo 41.7 12 0.00041 32.5 2.2 18 70-87 43-60 (271)
401 2z0h_A DTMP kinase, thymidylat 41.5 11 0.00037 30.0 1.8 14 75-88 3-16 (197)
402 1e4v_A Adenylate kinase; trans 41.3 11 0.00036 31.0 1.7 14 74-87 2-15 (214)
403 1sxj_B Activator 1 37 kDa subu 41.2 11 0.00036 32.6 1.8 15 74-88 44-58 (323)
404 2olj_A Amino acid ABC transpor 41.2 12 0.00043 32.3 2.3 19 70-88 48-66 (263)
405 2i1q_A DNA repair and recombin 40.9 13 0.00046 32.6 2.5 18 71-88 97-114 (322)
406 3qkt_A DNA double-strand break 40.9 11 0.00038 33.7 1.9 15 75-89 26-40 (339)
407 2jeo_A Uridine-cytidine kinase 40.9 11 0.00038 31.7 1.8 20 70-89 23-42 (245)
408 2wsm_A Hydrogenase expression/ 40.9 17 0.0006 29.4 3.0 16 72-87 30-45 (221)
409 1uf9_A TT1252 protein; P-loop, 40.6 11 0.00038 30.2 1.7 16 73-88 9-24 (203)
410 1v5w_A DMC1, meiotic recombina 40.5 14 0.0005 33.0 2.7 17 72-88 122-138 (343)
411 1vht_A Dephospho-COA kinase; s 40.5 11 0.00038 30.8 1.8 17 72-88 4-20 (218)
412 3umf_A Adenylate kinase; rossm 40.3 11 0.00038 31.8 1.7 18 70-87 27-44 (217)
413 2ihy_A ABC transporter, ATP-bi 40.0 13 0.00045 32.4 2.2 19 70-88 45-63 (279)
414 2jgn_A DBX, DDX3, ATP-dependen 39.9 30 0.001 27.8 4.3 36 123-162 46-81 (185)
415 3cf2_A TER ATPase, transitiona 39.9 11 0.00038 38.3 2.0 17 72-88 238-254 (806)
416 3pxi_A Negative regulator of g 39.7 18 0.00063 36.0 3.5 16 74-89 523-538 (758)
417 2byk_A Chrac-16; nucleosome sl 39.5 9.9 0.00034 30.1 1.2 10 201-210 88-97 (140)
418 3bs4_A Uncharacterized protein 39.5 30 0.001 30.0 4.5 25 70-95 19-43 (260)
419 2xb4_A Adenylate kinase; ATP-b 39.3 12 0.00041 31.0 1.8 14 74-87 2-15 (223)
420 3cmw_A Protein RECA, recombina 39.3 21 0.00072 39.3 4.0 26 70-96 730-755 (1706)
421 1ltq_A Polynucleotide kinase; 39.0 13 0.00043 32.2 1.9 15 74-88 4-18 (301)
422 2hf9_A Probable hydrogenase ni 38.9 20 0.00067 29.2 3.1 15 72-86 38-52 (226)
423 2og2_A Putative signal recogni 38.8 13 0.00046 33.8 2.2 18 72-89 157-174 (359)
424 1qvr_A CLPB protein; coiled co 38.7 14 0.00047 37.5 2.4 16 73-88 589-604 (854)
425 3i32_A Heat resistant RNA depe 38.7 85 0.0029 27.5 7.4 39 123-165 28-66 (300)
426 2v3c_C SRP54, signal recogniti 38.3 30 0.001 32.2 4.5 17 73-89 100-116 (432)
427 2vhj_A Ntpase P4, P4; non- hyd 38.0 17 0.00059 32.9 2.7 18 70-87 121-138 (331)
428 2onk_A Molybdate/tungstate ABC 37.9 14 0.00046 31.6 1.9 16 73-88 25-40 (240)
429 2r8r_A Sensor protein; KDPD, P 37.9 14 0.00049 31.6 2.0 17 74-90 8-24 (228)
430 2jlq_A Serine protease subunit 37.6 39 0.0013 31.3 5.2 51 125-179 190-241 (451)
431 1w5s_A Origin recognition comp 37.6 17 0.00058 32.5 2.7 17 72-88 50-68 (412)
432 1z06_A RAS-related protein RAB 37.6 10 0.00034 30.0 1.0 14 73-86 21-34 (189)
433 2d7d_A Uvrabc system protein B 37.3 76 0.0026 31.1 7.5 89 123-218 445-544 (661)
434 2bbs_A Cystic fibrosis transme 37.3 15 0.00051 32.3 2.2 19 70-88 62-80 (290)
435 2f1r_A Molybdopterin-guanine d 37.0 7.7 0.00026 31.4 0.2 15 74-88 4-18 (171)
436 1vma_A Cell division protein F 37.0 15 0.0005 32.7 2.1 18 72-89 104-121 (306)
437 3mm4_A Histidine kinase homolo 36.4 45 0.0015 26.8 4.9 67 70-146 18-84 (206)
438 2pjz_A Hypothetical protein ST 36.3 18 0.00061 31.3 2.4 19 70-89 29-47 (263)
439 3aez_A Pantothenate kinase; tr 36.1 14 0.00049 32.8 1.8 19 70-88 88-106 (312)
440 1svm_A Large T antigen; AAA+ f 36.1 16 0.00055 33.5 2.2 18 70-87 167-184 (377)
441 1q3t_A Cytidylate kinase; nucl 36.0 17 0.00059 30.2 2.3 20 70-89 14-33 (236)
442 1sq5_A Pantothenate kinase; P- 35.9 25 0.00085 30.8 3.4 18 71-88 79-96 (308)
443 1nij_A Hypothetical protein YJ 35.8 15 0.00052 32.5 2.0 14 75-88 7-20 (318)
444 3e70_C DPA, signal recognition 35.5 17 0.00057 32.7 2.2 18 71-88 128-145 (328)
445 3nh6_A ATP-binding cassette SU 35.3 11 0.00038 33.5 1.0 19 70-88 78-96 (306)
446 1pzn_A RAD51, DNA repair and r 35.1 18 0.00063 32.5 2.5 21 36-56 37-58 (349)
447 1g8x_A Myosin II heavy chain f 35.1 37 0.0013 35.4 4.9 31 60-90 158-190 (1010)
448 1odf_A YGR205W, hypothetical 3 35.1 16 0.00054 32.1 1.9 16 73-88 32-47 (290)
449 3con_A GTPase NRAS; structural 34.9 23 0.0008 27.7 2.8 14 73-86 22-35 (190)
450 3sop_A Neuronal-specific septi 34.8 15 0.00052 31.8 1.8 14 74-87 4-17 (270)
451 2vp4_A Deoxynucleoside kinase; 34.8 16 0.00054 30.4 1.8 18 70-87 18-35 (230)
452 2z83_A Helicase/nucleoside tri 34.8 38 0.0013 31.5 4.6 52 124-179 191-243 (459)
453 1g5t_A COB(I)alamin adenosyltr 34.5 36 0.0012 28.3 4.0 23 72-94 28-50 (196)
454 1pui_A ENGB, probable GTP-bind 34.4 16 0.00054 29.3 1.7 18 70-87 24-41 (210)
455 1hv8_A Putative ATP-dependent 34.1 56 0.0019 28.1 5.5 40 122-165 237-276 (367)
456 3clv_A RAB5 protein, putative; 34.0 25 0.00084 27.4 2.8 13 74-86 9-21 (208)
457 1uj2_A Uridine-cytidine kinase 34.0 16 0.00056 30.8 1.8 15 74-88 24-38 (252)
458 4eaq_A DTMP kinase, thymidylat 33.9 15 0.00052 30.8 1.6 18 70-87 24-41 (229)
459 3ake_A Cytidylate kinase; CMP 33.9 17 0.0006 29.0 1.9 15 74-88 4-18 (208)
460 3cr8_A Sulfate adenylyltranfer 33.4 25 0.00084 34.0 3.2 48 39-87 328-384 (552)
461 2dyk_A GTP-binding protein; GT 32.9 17 0.00057 27.4 1.5 13 74-86 3-15 (161)
462 3i5x_A ATP-dependent RNA helic 32.6 1.5E+02 0.0052 27.6 8.6 43 122-165 338-380 (563)
463 1lkx_A Myosin IE heavy chain; 32.2 25 0.00086 35.1 3.0 57 33-89 48-111 (697)
464 1e69_A Chromosome segregation 32.2 19 0.00065 31.8 2.0 15 74-88 26-40 (322)
465 1z47_A CYSA, putative ABC-tran 32.1 18 0.00062 32.9 1.9 19 70-88 39-57 (355)
466 3fvq_A Fe(3+) IONS import ATP- 32.1 18 0.00061 33.1 1.8 18 70-87 28-45 (359)
467 1c4o_A DNA nucleotide excision 31.9 1E+02 0.0035 30.2 7.4 89 123-218 439-538 (664)
468 2grj_A Dephospho-COA kinase; T 31.8 19 0.00066 29.5 1.8 16 73-88 13-28 (192)
469 2f6r_A COA synthase, bifunctio 31.7 18 0.00061 31.4 1.7 15 74-88 77-91 (281)
470 2yhs_A FTSY, cell division pro 31.7 20 0.00069 34.3 2.2 18 72-89 293-310 (503)
471 2yyz_A Sugar ABC transporter, 31.5 19 0.00065 32.8 1.9 19 70-88 27-45 (359)
472 2ce2_X GTPase HRAS; signaling 31.5 17 0.00059 27.2 1.4 13 74-86 5-17 (166)
473 2it1_A 362AA long hypothetical 31.5 19 0.00065 32.8 1.9 19 70-88 27-45 (362)
474 2h92_A Cytidylate kinase; ross 31.4 22 0.00076 28.9 2.2 17 72-88 3-19 (219)
475 3zvl_A Bifunctional polynucleo 31.3 19 0.00065 33.2 1.9 16 73-88 259-274 (416)
476 1z2a_A RAS-related protein RAB 31.3 18 0.00062 27.4 1.5 13 74-86 7-19 (168)
477 2orv_A Thymidine kinase; TP4A 31.2 36 0.0012 29.2 3.5 19 71-89 18-36 (234)
478 3tqc_A Pantothenate kinase; bi 31.1 20 0.00068 32.1 1.9 15 74-88 94-108 (321)
479 1wp9_A ATP-dependent RNA helic 31.0 96 0.0033 27.5 6.7 33 123-159 361-393 (494)
480 4anj_A Unconventional myosin-V 31.0 26 0.00089 36.7 3.0 26 72-98 144-169 (1052)
481 2i4i_A ATP-dependent RNA helic 30.7 80 0.0027 27.9 6.0 40 122-165 275-314 (417)
482 1g29_1 MALK, maltose transport 30.6 20 0.00068 32.8 1.9 19 70-88 27-45 (372)
483 2o5v_A DNA replication and rep 30.2 21 0.00071 32.5 1.9 15 74-88 28-42 (359)
484 1v43_A Sugar-binding transport 30.0 21 0.00072 32.7 1.9 19 70-88 35-53 (372)
485 2j0s_A ATP-dependent RNA helic 29.9 1.5E+02 0.0051 26.1 7.7 38 124-165 277-314 (410)
486 2f9l_A RAB11B, member RAS onco 29.8 23 0.00077 28.3 1.9 13 74-86 7-19 (199)
487 1xti_A Probable ATP-dependent 29.8 83 0.0028 27.5 5.9 39 123-165 250-288 (391)
488 3gd7_A Fusion complex of cysti 29.8 23 0.00078 32.6 2.2 19 70-88 45-63 (390)
489 2fh5_B SR-beta, signal recogni 29.7 31 0.0011 27.6 2.8 14 73-86 8-21 (214)
490 1ny5_A Transcriptional regulat 29.6 36 0.0012 30.9 3.5 20 70-89 158-177 (387)
491 1zu4_A FTSY; GTPase, signal re 29.4 23 0.00079 31.5 2.1 18 72-89 105-122 (320)
492 1ky3_A GTP-binding protein YPT 29.2 21 0.00071 27.5 1.5 13 74-86 10-22 (182)
493 2l8b_A Protein TRAI, DNA helic 29.2 59 0.002 26.9 4.3 64 57-142 35-99 (189)
494 3r20_A Cytidylate kinase; stru 29.1 23 0.00079 30.1 1.9 17 72-88 9-25 (233)
495 1s2m_A Putative ATP-dependent 29.1 79 0.0027 27.8 5.6 39 123-165 258-296 (400)
496 1z0j_A RAB-22, RAS-related pro 29.0 21 0.00072 27.0 1.5 12 75-86 9-20 (170)
497 1kao_A RAP2A; GTP-binding prot 28.9 21 0.00073 26.8 1.5 12 75-86 6-17 (167)
498 1i84_S Smooth muscle myosin he 28.9 37 0.0013 35.9 3.8 56 33-88 123-185 (1184)
499 2v26_A Myosin VI; calmodulin-b 28.8 30 0.001 35.0 3.0 33 56-88 122-156 (784)
500 3dz8_A RAS-related protein RAB 28.7 35 0.0012 26.8 2.9 21 75-96 26-46 (191)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=6.8e-32 Score=238.21 Aligned_cols=186 Identities=21% Similarity=0.185 Sum_probs=158.7
Q ss_pred cccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHH
Q 042526 21 EELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEE 100 (284)
Q Consensus 21 ~~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~ 100 (284)
...+.+.+.|.|+.+|.+++|++.++++|.++||..|||+|.++||.+ +.|+|++++||||||||++|++|++.++...
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~ 94 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVA-LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 94 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHH-HHTCCEEEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCcCHHHHHHHHHHHHHHHhc
Confidence 346678889999999999999999999999999999999999999998 8999999999999999999999999987643
Q ss_pred HHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCccccc
Q 042526 101 REKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRT 179 (284)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~ 179 (284)
. ......++++|||+|||+||.|+++.++.+....++.+.+++|+ ....+...+..++++++.+
T Consensus 95 ~---------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T 159 (242)
T 3fe2_A 95 P---------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 159 (242)
T ss_dssp C---------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEEC
T ss_pred c---------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEEC
Confidence 1 11223578899999999999999999999999889988888776 4555667777888887766
Q ss_pred c---------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCCc
Q 042526 180 R---------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGKK 222 (284)
Q Consensus 180 ~---------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~~ 222 (284)
. ....+.++..+|+|||++|.+.||.+....++...+...|..
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~ 211 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 211 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEE
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEE
Confidence 2 223577889999999999999999999999988876665543
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=1.1e-31 Score=256.47 Aligned_cols=178 Identities=23% Similarity=0.296 Sum_probs=154.2
Q ss_pred ccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 22 ~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
..+.+.++|.|+.+|.+++|++.++++|.++||..|||+|.+|||.+ +.|+|++++|+||||||++|++|+++++....
T Consensus 44 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i-~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVI-SSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp EEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 45788899999999999999999999999999999999999999999 89999999999999999999999999887642
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc
Q 042526 102 EKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR 180 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~ 180 (284)
......++++|||+|||+||.|++++++.++...++++++++|+ ....|...+..++++++.+.
T Consensus 123 ---------------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp 187 (434)
T 2db3_A 123 ---------------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATP 187 (434)
T ss_dssp ---------------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECH
T ss_pred ---------------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEECh
Confidence 11234578999999999999999999999999888888777776 45556677778888877661
Q ss_pred ---------cCCccccccccCCCCCCcccccccccchhhhcccC
Q 042526 181 ---------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLT 215 (284)
Q Consensus 181 ---------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~ 215 (284)
....+.++..+|+||||+|.++||.++...++...
T Consensus 188 ~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 188 GRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp HHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred HHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 12347788999999999999999999998888764
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=236.65 Aligned_cols=169 Identities=23% Similarity=0.289 Sum_probs=140.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
++.+|.+++|++.|+++|..+||..|||+|.+|||.+ +.| +|++++||||||||+||++|+++++...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i-l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---------
Confidence 4678999999999999999999999999999999999 776 9999999999999999999999876432
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCcchHHHHHhcCCCcccccc--------
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPLLTSEHSNRRKPNKRKRTR-------- 180 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~-------- 180 (284)
..++++|||+|||+||.|++.+++.++... ++.+.+++|+..... .....++|++.+.
T Consensus 160 -----------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 160 -----------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER--GQKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp -----------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT--TCCCCCSEEEECHHHHHHHHT
T ss_pred -----------CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh--hhcCCCCEEEECHHHHHHHHH
Confidence 247899999999999999999999998875 678877777654332 1245677766651
Q ss_pred --cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCCCcc
Q 042526 181 --KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 181 --~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~~~~ 223 (284)
....+.++..+|+||||+|++ .||......++...++..|..+
T Consensus 227 ~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~ 272 (300)
T 3fmo_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLL 272 (300)
T ss_dssp TTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEE
T ss_pred hcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEE
Confidence 234578999999999999998 6899999888888877666444
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=7.7e-30 Score=222.47 Aligned_cols=180 Identities=19% Similarity=0.176 Sum_probs=144.2
Q ss_pred cccccCccccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 25 NEAEISTEFDAWNE-LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 25 ~~~~~p~~~~~F~~-l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
.+..+|.|+.+|.+ +++++.++++|.++||..|||+|.++||.+ +.|+|++++||||||||++|++|++..+.....
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~- 87 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPII-LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI- 87 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHC-----
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHHhccc-
Confidence 45668999999999 799999999999999999999999999998 899999999999999999999999998765321
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc--
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR-- 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~-- 180 (284)
......++++|||+|||+||.|+++.++.+. ..++.+.+++|+ ....+...+..++++++.+.
T Consensus 88 -------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~ 153 (228)
T 3iuy_A 88 -------------SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGR 153 (228)
T ss_dssp ------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHH
T ss_pred -------------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 1112357889999999999999999999987 356777666665 55566677778888877662
Q ss_pred -------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 181 -------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 -------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+.+|.+....++...+...+
T Consensus 154 l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 154 LNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200 (228)
T ss_dssp HHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCE
T ss_pred HHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCe
Confidence 2234678899999999999999999999888877765544
No 5
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=218.11 Aligned_cols=175 Identities=26% Similarity=0.277 Sum_probs=145.9
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
+.++.+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-------- 91 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA-LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ-------- 91 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT--------
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc--------
Confidence 466788999999999999999999999999999999999 89999999999999999999999999887531
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--------- 180 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--------- 180 (284)
.....++++|||+|||+||.|++..++.+....++.+.+++|+...........++++++.+.
T Consensus 92 --------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~ 163 (236)
T 2pl3_A 92 --------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDE 163 (236)
T ss_dssp --------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHH
T ss_pred --------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHh
Confidence 112246789999999999999999999999888899988888865554444456778766551
Q ss_pred -cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCC
Q 042526 181 -KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 181 -~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~ 221 (284)
....+.++..+|+|||+++.+.+|.+....++...+...+.
T Consensus 164 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 205 (236)
T 2pl3_A 164 TVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQT 205 (236)
T ss_dssp CSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEE
T ss_pred cCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeE
Confidence 12346788899999999999999999988888877765553
No 6
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=3e-29 Score=219.60 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=141.0
Q ss_pred ccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 24 ~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
..++..|.+..+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 14 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--- 89 (230)
T 2oxc_A 14 RTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLG-RCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--- 89 (230)
T ss_dssp ----------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---
T ss_pred ccCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---
Confidence 346677888899999999999999999999999999999999998 8999999999999999999999999876432
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCcchHHHHHhcCCCcccccc--
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPLLTSEHSNRRKPNKRKRTR-- 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~-- 180 (284)
..++++|||+|||+||.|+++.++.+.... ++.+.+++|+....+......++++++.+.
T Consensus 90 -----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~ 152 (230)
T 2oxc_A 90 -----------------NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGR 152 (230)
T ss_dssp -----------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHH
T ss_pred -----------------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHH
Confidence 246789999999999999999999998765 788988888866655555556778876552
Q ss_pred -------cCCccccccccCCCCCCcccccc-cccchhhhcccCCCCCC
Q 042526 181 -------KGGEDEKLDSLKWNPLSQPKTTT-LLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 -------~~~~~d~l~~lv~dEAd~m~~~g-flp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+++.+.| |.+....++...+...+
T Consensus 153 l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 200 (230)
T 2oxc_A 153 IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 200 (230)
T ss_dssp HHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCE
T ss_pred HHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCe
Confidence 22346788899999999999998 88888777777765554
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=222.62 Aligned_cols=171 Identities=28% Similarity=0.334 Sum_probs=146.9
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
+.+..+|++++|++.++++|..+||..|+++|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--------- 108 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA-LQGRDIIGLAETGSGKTGAFALPILNALLET--------- 108 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------
Confidence 456788999999999999999999999999999999999 8999999999999999999999999887653
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc--------
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR-------- 180 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~-------- 180 (284)
..++++|||+|||+||.|+++.++.++...++.+.+++|+. ...+...+..++++++.+.
T Consensus 109 -----------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 177 (249)
T 3ber_A 109 -----------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE 177 (249)
T ss_dssp -----------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHH
T ss_pred -----------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 13678999999999999999999999998889888888774 4555666777888877651
Q ss_pred --cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCC
Q 042526 181 --KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 181 --~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~ 221 (284)
....+.++..+|+|||+++.+.+|.+....++...++..+.
T Consensus 178 ~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 220 (249)
T 3ber_A 178 NTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 220 (249)
T ss_dssp HSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEE
T ss_pred cCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeE
Confidence 22356788899999999999999999998888877665543
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=2.6e-29 Score=222.67 Aligned_cols=181 Identities=22% Similarity=0.299 Sum_probs=147.5
Q ss_pred ccccccccCc--cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHH
Q 042526 22 ELVNEAEIST--EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLE 99 (284)
Q Consensus 22 ~~~~~~~~p~--~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~ 99 (284)
..+.+...|. ++.+|.+|+|++.++++|..+||..|+|+|.++||.+ +.|+|++++||||||||++|++|+++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI-LEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 3456677777 8999999999999999999999999999999999999 899999999999999999999999998765
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccc
Q 042526 100 EREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKR 178 (284)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~ 178 (284)
.... ........++++|||+|||+||.|+++.++.+....++.+++++|+. ...+...+..++++++.
T Consensus 88 ~~~~-----------~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~ 156 (253)
T 1wrb_A 88 QDLN-----------QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVA 156 (253)
T ss_dssp TCC-----------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEE
T ss_pred hccc-----------cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEE
Confidence 3100 00111234678999999999999999999999988888887777764 45556666777888776
Q ss_pred cc---------cCCccccccccCCCCCCcccccccccchhhhccc
Q 042526 179 TR---------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 179 ~~---------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
+. ....+.++..+|+|||++|.+.+|.++...++..
T Consensus 157 Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 157 TPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 201 (253)
T ss_dssp CHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhh
Confidence 51 1234677889999999999999999988888774
No 9
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=2.9e-29 Score=220.88 Aligned_cols=178 Identities=21% Similarity=0.246 Sum_probs=135.9
Q ss_pred ccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 22 ELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 22 ~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
..+...+.|.++.+|++++|++.++++|..+||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 18 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i-~~~~~~li~apTGsGKT~~~~l~~l~~l~~~- 95 (237)
T 3bor_A 18 GGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPC-IKGYDVIAQAQSGTGKTATFAISILQQLEIE- 95 (237)
T ss_dssp ---------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-
T ss_pred CCcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-
Confidence 45566778899999999999999999999999999999999999999 8999999999999999999999999876432
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcC-CCccccc
Q 042526 102 EKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRK-PNKRKRT 179 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~-~~i~v~~ 179 (284)
..++++|||+|||+||.|++..++.++...++.+..++|+ ....+...+..+ +++++.+
T Consensus 96 -------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~T 156 (237)
T 3bor_A 96 -------------------FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGT 156 (237)
T ss_dssp -------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEEC
T ss_pred -------------------CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEEC
Confidence 2467899999999999999999999998888888777766 444455555555 7776655
Q ss_pred ---------ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 180 ---------RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 180 ---------~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
.....+.++..+|+|||+.|.+.+|......++...+...+
T Consensus 157 p~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 206 (237)
T 3bor_A 157 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206 (237)
T ss_dssp HHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCe
Confidence 12235677899999999999999999888887776655544
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=229.29 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=150.0
Q ss_pred cccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEERE 102 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~ 102 (284)
.+.+.++|.++.+|++++|++.++++|..+||..|||+|.++||.+ +.|+|++++||||||||++|++|+++.+.....
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPII-KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 3567789999999999999999999999999999999999999998 899999999999999999999999998876421
Q ss_pred HHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc-
Q 042526 103 KAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR- 180 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~- 180 (284)
.... ..............++++|||+|||+||.|+++.++.+....++.+++++|+ ....+...+..++++++.+.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 160 (417)
T 2i4i_A 83 GEAL--RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG 160 (417)
T ss_dssp CHHH--HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHH
T ss_pred cchh--hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChH
Confidence 0000 0000000011223457899999999999999999999998888888887776 45556666777788877652
Q ss_pred --------cCCccccccccCCCCCCcccccccccchhhhccc
Q 042526 181 --------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 181 --------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
....++.+..+|+|||+.+.+.+|.+....++..
T Consensus 161 ~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~ 202 (417)
T 2i4i_A 161 RLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ 202 (417)
T ss_dssp HHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHh
Confidence 1124677888999999999999999988887763
No 11
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=9.4e-29 Score=214.57 Aligned_cols=176 Identities=19% Similarity=0.293 Sum_probs=141.4
Q ss_pred ccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 24 ~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
....++|.++.+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--- 79 (224)
T 1qde_A 4 QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI-IEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--- 79 (224)
T ss_dssp -CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---
T ss_pred ccccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-hcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---
Confidence 345667888999999999999999999999999999999999999 8999999999999999999999999876432
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--- 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--- 180 (284)
..++++|||+|||+||.|+++.+..+....++.+..+.|+............+++++.+.
T Consensus 80 -----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l 142 (224)
T 1qde_A 80 -----------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRV 142 (224)
T ss_dssp -----------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHH
T ss_pred -----------------CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHH
Confidence 246789999999999999999999999888898888888755444333334477766551
Q ss_pred ------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 181 ------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 143 ~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~ 188 (224)
T 1qde_A 143 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 188 (224)
T ss_dssp HHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred HHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCe
Confidence 2234677899999999999999999888888776655544
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=219.97 Aligned_cols=171 Identities=24% Similarity=0.309 Sum_probs=140.6
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 34 DAWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 34 ~~F~~l~--L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
.+|++++ |++.++++|.++||..|+|+|.++||.+ +.|+|++++||||||||++|++|+++.+....
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPL-LEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHH-HHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 4577776 9999999999999999999999999999 88999999999999999999999999887631
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc----------
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR---------- 180 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~---------- 180 (284)
.....++++|||+|||+||.|++..++.+....++.+.+++|+. ...+...+..+++|++.+.
T Consensus 121 ------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 121 ------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 194 (262)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc
Confidence 11224678999999999999999999999998888888877764 4555566677788877661
Q ss_pred cCCccccccccCCCCCCcccccccccchhhhcccCCCCCCC
Q 042526 181 KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPGK 221 (284)
Q Consensus 181 ~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~~ 221 (284)
....+.++..+|+|||++|.+.||.++...++..++...|.
T Consensus 195 ~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~ 235 (262)
T 3ly5_A 195 PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQT 235 (262)
T ss_dssp TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEE
T ss_pred CCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeE
Confidence 22356788999999999999999999998888877665543
No 13
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.6e-28 Score=208.07 Aligned_cols=166 Identities=19% Similarity=0.273 Sum_probs=138.9
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
.+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------------- 68 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIA-LSGRDILARAKNGTGKSGAYLIPLLERLDLK------------- 68 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHH-HTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-ccCCCEEEECCCCCchHHHHHHHHHHHhccc-------------
Confidence 47999999999999999999999999999999998 8999999999999999999999999865332
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCc-chHHHHHhcCCCcccccc---------cC
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPL-LTSEHSNRRKPNKRKRTR---------KG 182 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~-~~q~~~l~~~~~i~v~~~---------~~ 182 (284)
..++++|||+|||+|+.|+++.+..+.... ++.+.+++|+.. ..+...+..++++++.+. ..
T Consensus 69 -------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 69 -------KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp -------SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred -------CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC
Confidence 246789999999999999999999998877 788877777644 444455566777766552 22
Q ss_pred CccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 183 GEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 183 ~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
..+.++..+|+|||+.+.+.+|.+....++...++..+
T Consensus 142 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 179 (206)
T 1vec_A 142 AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQ 179 (206)
T ss_dssp SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCE
T ss_pred cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccce
Confidence 35678899999999999999999888888877765544
No 14
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-28 Score=213.71 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=138.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
+..+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----------- 69 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGA-LRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----------- 69 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----------
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----------
Confidence 3468999999999999999999999999999999999 8999999999999999999999999876432
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC----CceeEEEeCCCcch-HHHHHhcCCCcccccc------
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN----SLTLAMAAGSPLLT-SEHSNRRKPNKRKRTR------ 180 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~----~i~v~~~~G~~~~~-q~~~l~~~~~i~v~~~------ 180 (284)
..++++|||+|||+||.|+++.++.+.... ++.+.+++|+.... +...+..++++++.+.
T Consensus 70 ---------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 140 (219)
T 1q0u_A 70 ---------RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDF 140 (219)
T ss_dssp ---------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHH
T ss_pred ---------cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHH
Confidence 246789999999999999999999998876 67787777775433 3333445677766552
Q ss_pred ---cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 181 ---KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ---~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 141 l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 141 IREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQ 183 (219)
T ss_dssp HHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCE
T ss_pred HHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccE
Confidence 1235678899999999999999999888888887765554
No 15
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=215.72 Aligned_cols=173 Identities=23% Similarity=0.312 Sum_probs=141.4
Q ss_pred cccccccCccccCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 23 LVNEAEISTEFDAWNEL----RLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 23 ~~~~~~~p~~~~~F~~l----~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.+.+.++|.|+.+|.++ +|++.++++|.++||..|||+|.++||.+ +.|+|++++||||||||++|++|++..+.
T Consensus 14 ~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 14 HVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVM-LHGRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp EEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred EecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 45677899999999998 89999999999999999999999999999 89999999999999999999999998764
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH--HHHHhcCCCcc
Q 042526 99 EEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS--EHSNRRKPNKR 176 (284)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q--~~~l~~~~~i~ 176 (284)
. ....++++|||+|||+||.|+++.+..+....++.+.++.|+....+ ......+++++
T Consensus 93 ~-------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 93 Q-------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp S-------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred h-------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 3 12346789999999999999999999999988888877766532222 12234456776
Q ss_pred cccc-----------cCCccccccccCCCCCCcccc---cccccchhhhcccC
Q 042526 177 KRTR-----------KGGEDEKLDSLKWNPLSQPKT---TTLLPSSLALMNLT 215 (284)
Q Consensus 177 v~~~-----------~~~~~d~l~~lv~dEAd~m~~---~gflp~~~~~~~~~ 215 (284)
+.+. ....+.++..+|+|||+.|.+ .+|......++...
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~ 206 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 206 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHC
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhc
Confidence 6551 124577889999999999988 78888888776543
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.2e-27 Score=205.60 Aligned_cols=176 Identities=21% Similarity=0.255 Sum_probs=135.7
Q ss_pred ccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHH
Q 042526 24 VNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREK 103 (284)
Q Consensus 24 ~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~ 103 (284)
+.+...+....+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--- 79 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--- 79 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHHhhhcc---
Confidence 345556667788999999999999999999999999999999999 8999999999999999999999999765321
Q ss_pred HHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCc-chHHHHHhc-CCCcccccc
Q 042526 104 AAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPL-LTSEHSNRR-KPNKRKRTR 180 (284)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~-~~q~~~l~~-~~~i~v~~~ 180 (284)
..++++|||+|||+|+.|+++.++.+.... ++++.+++|+.. ..+...+.. .+++++.+.
T Consensus 80 -----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 80 -----------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 142 (220)
T ss_dssp -----------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECH
T ss_pred -----------------CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCH
Confidence 235689999999999999999999998876 788888888754 444444444 457766551
Q ss_pred ---------cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCC
Q 042526 181 ---------KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ---------~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+ .+|......++...+.+.+
T Consensus 143 ~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 192 (220)
T 1t6n_A 143 GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 192 (220)
T ss_dssp HHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSE
T ss_pred HHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCe
Confidence 223567889999999999886 6888777777766655444
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=7.1e-27 Score=199.86 Aligned_cols=166 Identities=25% Similarity=0.297 Sum_probs=137.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLA-LEGKDLIGQARTGTGKTLAFALPIAERLAPS-------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-cCCCCEEEECCCCChHHHHHHHHHHHHHhhc--------------
Confidence 6999999999999999999999999999999999 8999999999999999999999999876431
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCC-CcchHHHHHhcCCCcccccc---------cCCc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGS-PLLTSEHSNRRKPNKRKRTR---------KGGE 184 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~-~~~~q~~~l~~~~~i~v~~~---------~~~~ 184 (284)
.....++++||++|||+|+.|+++.+..+... +.+..++|+ ....+...+..++++++.+. ....
T Consensus 67 ---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~ 141 (207)
T 2gxq_A 67 ---QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLD 141 (207)
T ss_dssp ---CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSC
T ss_pred ---cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcc
Confidence 11235688999999999999999999998765 566666665 45556666677788876652 1234
Q ss_pred cccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 185 DEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 177 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSE
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhCCccCe
Confidence 678899999999999999999988888877665544
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.93 E-value=1.8e-26 Score=216.65 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=144.5
Q ss_pred cccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHH
Q 042526 27 AEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK 106 (284)
Q Consensus 27 ~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~ 106 (284)
...+.+..+|++++|++.++++|..+||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+...
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i-~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------ 102 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI-IKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------ 102 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCCchHHHHHHHHHHHhhc------
Confidence 344566789999999999999999999999999999999999 8999999999999999999999999765321
Q ss_pred HHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc-----
Q 042526 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR----- 180 (284)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~----- 180 (284)
..++++|||+|||+||.|+++.+..++...++.+..++|+. ...+...+..++++++.+.
T Consensus 103 --------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~ 168 (410)
T 2j0s_A 103 --------------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD 168 (410)
T ss_dssp --------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred --------------cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHH
Confidence 24678999999999999999999999998899888877764 4555566667788876552
Q ss_pred ----cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 181 ----KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ----~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
....+..+..+|+|||+.|.+.+|......++...+...+
T Consensus 169 ~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 169 MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212 (410)
T ss_dssp HHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred HHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCce
Confidence 1234567889999999999999999888888776665554
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=207.83 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=146.0
Q ss_pred ccccccccccccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 18 DAQEELVNEAEISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..+.......+.+....+|.+++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 24 GMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPC-IKGYDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp ------CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred ccccccccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHH-hCCCCEEEECCCCCcccHHHHHHHHHHH
Confidence 334445566777888899999999999999999999999999999999999 8999999999999999999999999865
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHh-cCCCc
Q 042526 98 LEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNR-RKPNK 175 (284)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~-~~~~i 175 (284)
... ..+.++|||+|||+||.|+++.+..++...++.+..++|+. ...+...+. ..+++
T Consensus 103 ~~~--------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (414)
T 3eiq_A 103 ELD--------------------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 162 (414)
T ss_dssp CTT--------------------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSE
T ss_pred hhc--------------------CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCE
Confidence 432 24678999999999999999999999998888887777664 444444444 45677
Q ss_pred ccccc---------cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 176 RKRTR---------KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 176 ~v~~~---------~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
++.+. ....+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 163 iv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 216 (414)
T 3eiq_A 163 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216 (414)
T ss_dssp EEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCE
T ss_pred EEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCe
Confidence 66551 1134566889999999999999999888888776655554
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=211.11 Aligned_cols=169 Identities=23% Similarity=0.286 Sum_probs=135.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
++.+|.+++|++.++++|.++||..|||+|.+|||.+ +.| +|++++||||||||++|++|+++.+...
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~i-l~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--------- 159 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-TSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---------
Confidence 4678999999999999999999999999999999999 776 9999999999999999999999766432
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCcchHHHHHhcCCCcccccc--------
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPLLTSEHSNRRKPNKRKRTR-------- 180 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~-------- 180 (284)
..++++|||+|||+||.|++..++.+.... ++.+.+++|+...... ....+++++.+.
T Consensus 160 -----------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 160 -----------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp -----------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT--CCCCCSEEEECHHHHHHHHT
T ss_pred -----------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc--ccCCCCEEEECchHHHHHHH
Confidence 246789999999999999999999998865 6777777766443321 133456665541
Q ss_pred --cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCCCcc
Q 042526 181 --KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPGKKL 223 (284)
Q Consensus 181 --~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~~~~ 223 (284)
....+.++..+|+|||+.|.+ .+|......++...+...+..+
T Consensus 227 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~ 272 (479)
T 3fmp_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLL 272 (479)
T ss_dssp TSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEE
T ss_pred hcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEE
Confidence 233457899999999999887 6788888888777766665443
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=1.1e-24 Score=203.58 Aligned_cols=172 Identities=20% Similarity=0.278 Sum_probs=137.0
Q ss_pred ccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 042526 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107 (284)
Q Consensus 28 ~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~ 107 (284)
..+....+|++|+|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------- 86 (400)
T 1s2m_A 15 VLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA-ITGRDILARAKNGTGKTAAFVIPTLEKVKPK------- 86 (400)
T ss_dssp ------CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-------
T ss_pred ccccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-------
Confidence 34556678999999999999999999999999999999999 8999999999999999999999998765331
Q ss_pred HhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc-chHHHHHhcCCCccccc-------
Q 042526 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL-LTSEHSNRRKPNKRKRT------- 179 (284)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~-~~q~~~l~~~~~i~v~~------- 179 (284)
..++++|||+||++||.|+++.++.+....++.+..++|+.. ..+...+...+++++.+
T Consensus 87 -------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 153 (400)
T 1s2m_A 87 -------------LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDL 153 (400)
T ss_dssp -------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHH
T ss_pred -------------cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHH
Confidence 245689999999999999999999999988888888877754 34444555667776655
Q ss_pred --ccCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 180 --RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 180 --~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
.....+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 154 ~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 154 ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp HHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred HHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 12235677889999999999888887777666665554443
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=8.1e-25 Score=203.25 Aligned_cols=172 Identities=20% Similarity=0.304 Sum_probs=140.7
Q ss_pred ccCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 042526 28 EISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107 (284)
Q Consensus 28 ~~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~ 107 (284)
....+..+|++++|++.|+++|..+||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------- 86 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI-IEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------- 86 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHHHHHHHhhcc-------
Confidence 35567788999999999999999999999999999999999 8999999999999999999999999865432
Q ss_pred HhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc-------
Q 042526 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------- 180 (284)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------- 180 (284)
..++++|||+||++|+.|+++.+..+....++.+..+.|+............+++++.+.
T Consensus 87 -------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 153 (394)
T 1fuu_A 87 -------------VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 153 (394)
T ss_dssp -------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHH
T ss_pred -------------CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHH
Confidence 246789999999999999999999999888999988888765544443334667766551
Q ss_pred --cCCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 181 --KGGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 --~~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+.+|......++...+...+
T Consensus 154 ~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 195 (394)
T 1fuu_A 154 QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 195 (394)
T ss_dssp HTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred HhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCce
Confidence 1233567889999999999888888877776665544443
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.90 E-value=1.6e-24 Score=213.85 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=130.1
Q ss_pred cCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc--CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 042526 34 DAWNELR----LHPLLMKSIYKLGFKESTSILKARIPALAH--QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107 (284)
Q Consensus 34 ~~F~~l~----L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~--~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~ 107 (284)
.+|.+|. |++.|+++|..+||..|||+|.++||.+ + .|+|++++||||||||++|++|+++.+....
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-l~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~------ 89 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPI-LSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 89 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHH-HCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc------
Confidence 3455553 9999999999999999999999999999 6 6899999999999999999999999887642
Q ss_pred HhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC----CCceeEEEeCC-CcchHHHHHhc-CCCccccccc
Q 042526 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS----NSLTLAMAAGS-PLLTSEHSNRR-KPNKRKRTRK 181 (284)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~----~~i~v~~~~G~-~~~~q~~~l~~-~~~i~v~~~~ 181 (284)
.....++++|||+|||+||.|++..+..+... ..+.+..++|+ ....+...+.. +++|++.+.-
T Consensus 90 ----------~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~ 159 (579)
T 3sqw_A 90 ----------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPG 159 (579)
T ss_dssp ----------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHH
T ss_pred ----------ccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHH
Confidence 22234689999999999999999999998743 23556555555 55555555544 6888776521
Q ss_pred ----------CCccccccccCCCCCCcccccccccchhhhccc
Q 042526 182 ----------GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 182 ----------~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
...++.+..+|+|||++|.++||.++...++..
T Consensus 160 ~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 160 RLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 124567788999999999999999988666554
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=3.7e-24 Score=199.91 Aligned_cols=168 Identities=23% Similarity=0.279 Sum_probs=133.6
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~ 107 (284)
+.++.+|++++|++.++++|.++||..|+|+|.++||.+ +.| +|++++||||||||++|++|+++.+...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------- 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------- 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-------
Confidence 356788999999999999999999999999999999999 776 9999999999999999999999866432
Q ss_pred HhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCcchHHHHHhcCCCcccccc------
Q 042526 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------ 180 (284)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------ 180 (284)
..++++|||+|||+||.|++..+..+.... ++.+....|+...... ....+++++.+.
T Consensus 93 -------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~T~~~l~~~ 157 (412)
T 3fht_A 93 -------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDW 157 (412)
T ss_dssp -------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT--CCCCCSEEEECHHHHHHH
T ss_pred -------------CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh--hcCCCCEEEECchHHHHH
Confidence 246789999999999999999999998765 6777777776443321 233456655541
Q ss_pred ----cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCC
Q 042526 181 ----KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ----~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+|+|||+.+.+ .+|......+....+.+.+
T Consensus 158 ~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 202 (412)
T 3fht_A 158 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 202 (412)
T ss_dssp HTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCE
T ss_pred HHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCce
Confidence 233457889999999999876 6677777666666655554
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=4.2e-24 Score=198.49 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=133.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGE 113 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~ 113 (284)
.+|++++|++.++++|.++||..|+|+|.++|+.+ +.|+|++++||||||||++|++|++..+...
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------------- 73 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------------- 73 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHH-TTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCcEEEECCCCCcHHHHHHHHHHHhhccc-------------
Confidence 57999999999999999999999999999999999 8999999999999999999999998765321
Q ss_pred hhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC-CceeEEEeCCCc-chHHHHHhcC-CCcccccc---------c
Q 042526 114 EAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN-SLTLAMAAGSPL-LTSEHSNRRK-PNKRKRTR---------K 181 (284)
Q Consensus 114 ~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~-~~q~~~l~~~-~~i~v~~~---------~ 181 (284)
..++++|||+||++|+.|++..+..+.... ++++.++.|+.. ..+...+..+ +++++.+. .
T Consensus 74 -------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 74 -------TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp -------TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred -------CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 235689999999999999999999998876 788888888754 3344444443 67766551 2
Q ss_pred CCccccccccCCCCCCcccc-cccccchhhhcccCCCCCC
Q 042526 182 GGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~ 220 (284)
...+.++..+|+|||+.+.+ .+|......++...+...+
T Consensus 147 ~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 186 (391)
T 1xti_A 147 SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 186 (391)
T ss_dssp SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSE
T ss_pred CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCce
Confidence 23467888999999999877 5777777666665554443
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=5.2e-24 Score=197.28 Aligned_cols=165 Identities=23% Similarity=0.311 Sum_probs=132.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
.+.+|++++|++.++++|.++||..|+|+|.++|+.+ +.| ++++++||||||||++|++|++..+...
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------- 72 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLL-LHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--------- 72 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---------
Confidence 4578999999999999999999999999999999999 777 9999999999999999999999865332
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc---------c
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT---------R 180 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~---------~ 180 (284)
..++++|||+||++||.|++..++.+....++.+..++|+..... ....+++++.+ .
T Consensus 73 -----------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~ 138 (395)
T 3pey_A 73 -----------DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN---KQINAQVIVGTPGTVLDLMRR 138 (395)
T ss_dssp -----------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT---SCBCCSEEEECHHHHHHHHHT
T ss_pred -----------CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh---ccCCCCEEEEcHHHHHHHHHc
Confidence 246789999999999999999999999888888888877754332 12345665554 1
Q ss_pred cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCC
Q 042526 181 KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~ 220 (284)
....+.++..+++|||+.+.+ .+|......+....+...+
T Consensus 139 ~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~ 179 (395)
T 3pey_A 139 KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179 (395)
T ss_dssp TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCE
T ss_pred CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcE
Confidence 223467788999999999877 6777777666665555444
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=1e-23 Score=193.40 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=135.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR-KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEE 110 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G-~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~ 110 (284)
...+|++++|++.++++|.++||..|+|+|.++|+.+ +.| ++++++||||||||++|++|++..+..
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------- 71 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPLIELVNE----------- 71 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-----------
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHHHHhcc-----------
Confidence 3468999999999999999999999999999999999 666 799999999999999999999875432
Q ss_pred hhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------c
Q 042526 111 KGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------K 181 (284)
Q Consensus 111 ~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~ 181 (284)
..++++|||+||++|+.|+++.+..+....++.+..+.|+............+++++.+. .
T Consensus 72 ----------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 72 ----------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG 141 (367)
T ss_dssp ----------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT
T ss_pred ----------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC
Confidence 146789999999999999999999999888888888888765444333334677766551 1
Q ss_pred CCccccccccCCCCCCcccccccccchhhhcccCCCCCC
Q 042526 182 GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
...+.++..+++|||+.+.+.+|......++...+...+
T Consensus 142 ~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 142 TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 (367)
T ss_dssp CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCce
Confidence 123667888999999999999988888777665544443
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.89 E-value=6.5e-24 Score=207.91 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=129.2
Q ss_pred cCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc--CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 042526 34 DAWNELR----LHPLLMKSIYKLGFKESTSILKARIPALAH--QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKM 107 (284)
Q Consensus 34 ~~F~~l~----L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~--~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~ 107 (284)
.+|.++. |++.++++|..+||..|||+|.+|||.+ + .|+|++++||||||||++|++|+++.+....
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~------ 140 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPI-LSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 140 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHH-HSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc------
Confidence 3455553 9999999999999999999999999999 6 6899999999999999999999999887642
Q ss_pred HhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC----CCceeEEEeCC-CcchHHHHH-hcCCCccccccc
Q 042526 108 LEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS----NSLTLAMAAGS-PLLTSEHSN-RRKPNKRKRTRK 181 (284)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~----~~i~v~~~~G~-~~~~q~~~l-~~~~~i~v~~~~ 181 (284)
.....++++|||+|||+||.|++..++.+... ..+.+..++|+ ....+...+ ...++|++.+.-
T Consensus 141 ----------~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~ 210 (563)
T 3i5x_A 141 ----------FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPG 210 (563)
T ss_dssp ----------TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHH
T ss_pred ----------ccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcH
Confidence 22234678999999999999999999998653 23456666655 445555555 346888776621
Q ss_pred ----------CCccccccccCCCCCCcccccccccchhhhccc
Q 042526 182 ----------GGEDEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 182 ----------~~~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
...++.+..+|+|||++|.++||.+....++..
T Consensus 211 ~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 211 RLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 253 (563)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHh
Confidence 123567888999999999999998888666543
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=5.4e-22 Score=180.16 Aligned_cols=153 Identities=21% Similarity=0.245 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
|++.|.++|.++||..|+|+|.++|+.+ +.|++++++||||||||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i-~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLM-LQGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 6899999999999999999999999998 899999999999999999999998752
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCcccccccc
Q 042526 121 KGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGEDEKLDSL 191 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~d~l~~l 191 (284)
+.++|||+||++|+.|++..+..+....++.+..++|+............+++++.+. ....+.++..+
T Consensus 56 --~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 133 (337)
T 2z0m_A 56 --GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIV 133 (337)
T ss_dssp --TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEE
T ss_pred --cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEE
Confidence 3569999999999999999999999888888888888765444333344577766551 12346778889
Q ss_pred CCCCCCcccccccccchhhhcccCCCCCC
Q 042526 192 KWNPLSQPKTTTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 192 v~dEAd~m~~~gflp~~~~~~~~~~r~~~ 220 (284)
++|||+.+.+.+|......++...+...+
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKI 162 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSE
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccE
Confidence 99999999998888777666665544433
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.85 E-value=4.6e-22 Score=201.64 Aligned_cols=138 Identities=15% Similarity=0.045 Sum_probs=112.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.+|| +|||||..+||.+ +.|+ |+.++||||||+||+||++...+ .+++++||+
T Consensus 79 ~lG~-~pt~VQ~~~ip~l-l~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVlt 131 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVAL-HDGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVVT 131 (844)
T ss_dssp HHSC-CCCHHHHHHHHHH-HTTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred HcCC-CCcHHHHHhhHHH-hCCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEEe
Confidence 5899 9999999999998 8998 99999999999999999984321 256799999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc--c--------------CCccccccccCCC
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--K--------------GGEDEKLDSLKWN 194 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--~--------------~~~~d~l~~lv~d 194 (284)
|||+||.|++.++..|..+++++|++++|+... +.+.+..+++|++.|. . ...+..+.++|+|
T Consensus 132 ptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~-~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlD 210 (844)
T 1tf5_A 132 VNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSK-DEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVID 210 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCH-HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEEC
Confidence 999999999999999999999999999988654 4556667889877662 1 1234677889999
Q ss_pred CCCccc-cccc---------------ccchhhhcccCC
Q 042526 195 PLSQPK-TTTL---------------LPSSLALMNLTE 216 (284)
Q Consensus 195 EAd~m~-~~gf---------------lp~~~~~~~~~~ 216 (284)
|||.|+ |+++ ++++..++..++
T Consensus 211 EaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 211 EVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp THHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred chhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 999998 8864 455555666665
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.83 E-value=1.6e-21 Score=183.75 Aligned_cols=145 Identities=14% Similarity=-0.011 Sum_probs=115.6
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q 042526 44 LLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKG 122 (284)
Q Consensus 44 ~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (284)
.+.+.+.+ +|| .|||+|.++||.+ +.|+|++++||||||||++|++|++..+. .
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i-~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------------------~ 63 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRI-VQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------------------K 63 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHH-TTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------------------T
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------------------C
Confidence 45556665 577 6999999999999 89999999999999999999999876541 3
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcc----hHHHHHhcC-CCccccccc-------CCccccccc
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLL----TSEHSNRRK-PNKRKRTRK-------GGEDEKLDS 190 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~----~q~~~l~~~-~~i~v~~~~-------~~~~d~l~~ 190 (284)
++++|||+|||+||.|++..++.++. .++++..++|+... .+...+..+ +++++.+.- ...+.++..
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 67899999999999999999999988 88899888888653 344566665 788766521 123457889
Q ss_pred cCCCCC----------Ccccc-cccccc-hhhhccc
Q 042526 191 LKWNPL----------SQPKT-TTLLPS-SLALMNL 214 (284)
Q Consensus 191 lv~dEA----------d~m~~-~gflp~-~~~~~~~ 214 (284)
+|+||| |+|++ +||.++ ...++..
T Consensus 143 iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~ 178 (414)
T 3oiy_A 143 VFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFST 178 (414)
T ss_dssp EEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHh
Confidence 999999 78888 999998 4444443
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.81 E-value=6.2e-21 Score=193.09 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=105.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|||||..++|.+ +.|+ |+.++||||||++|++|++.... .+++++||+|
T Consensus 71 lg~-~p~~VQ~~~i~~l-l~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVltP 123 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVL-NERC--IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVTV 123 (853)
T ss_dssp HSC-CCCHHHHHHHHHH-HSSE--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEES
T ss_pred cCC-CCChHHHhhcccc-cCCe--eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEcC
Confidence 575 8999999999998 8998 99999999999999999986432 2568999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccC----------------CccccccccCCCC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKG----------------GEDEKLDSLKWNP 195 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~----------------~~~d~l~~lv~dE 195 (284)
||+||.|++..+..|..+++++|++++|+... +.+.+..+++|++.|.-- ..+..+.++|+||
T Consensus 124 TreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~-~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDE 202 (853)
T 2fsf_A 124 NDYLAQRDAENNRPLFEFLGLTVGINLPGMPA-PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDE 202 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH-HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESC
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCH-HHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECc
Confidence 99999999999999999999999999988654 556677788987766211 2346788899999
Q ss_pred CCccc-cccccc
Q 042526 196 LSQPK-TTTLLP 206 (284)
Q Consensus 196 Ad~m~-~~gflp 206 (284)
||.|+ ++++.|
T Consensus 203 aD~mLiD~a~tp 214 (853)
T 2fsf_A 203 VDSILIDEARTP 214 (853)
T ss_dssp HHHHTTTTTTCE
T ss_pred hHHHHHhcCccc
Confidence 99998 766544
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=5.6e-20 Score=193.59 Aligned_cols=139 Identities=15% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.+|| .|||+|.+|||.+ +.|+|++++||||||||++|++|++..+ . .++++|||+
T Consensus 74 ~~gf-~pt~iQ~~ai~~i-l~g~dvlv~ApTGSGKTl~~l~~il~~~-~----------------------~~~~~Lil~ 128 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRI-VQGKSFTMVAPTGVGKTTFGMMTALWLA-R----------------------KGKKSALVF 128 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHH-TTTCCEEECCSTTCCHHHHHHHHHHHHH-T----------------------TTCCEEEEE
T ss_pred hcCC-CCCHHHHHHHHHH-HcCCCEEEEeCCCCcHHHHHHHHHHHHH-h----------------------cCCeEEEEe
Confidence 3789 5999999999999 8999999999999999999888887655 1 367899999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc----chHHHHHhcC-CCcccccccC-------CccccccccCCCCC--
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPL----LTSEHSNRRK-PNKRKRTRKG-------GEDEKLDSLKWNPL-- 196 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~----~~q~~~l~~~-~~i~v~~~~~-------~~~d~l~~lv~dEA-- 196 (284)
|||+||.|++..++.|+ ..++++++++|+.. ..+...+..+ ++|++.+.-. ..+.++..+|+|||
T Consensus 129 PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp SSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHH
T ss_pred chHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCc
Confidence 99999999999999988 77889988888854 4455667666 8887766211 12567899999999
Q ss_pred --------Ccccc-cccccc-hhhhcccC
Q 042526 197 --------SQPKT-TTLLPS-SLALMNLT 215 (284)
Q Consensus 197 --------d~m~~-~gflp~-~~~~~~~~ 215 (284)
|+|++ +||.++ +..++..+
T Consensus 208 l~~~~r~~Dr~L~~~gf~~~~i~~il~~l 236 (1104)
T 4ddu_A 208 VLKASRNIDTLLMMVGIPEEIIRKAFSTI 236 (1104)
T ss_dssp HTTSSHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred cccccccchhhhHhcCCCHHHHHHHHHhc
Confidence 88889 999998 55555433
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.79 E-value=1e-19 Score=191.00 Aligned_cols=148 Identities=16% Similarity=0.054 Sum_probs=115.6
Q ss_pred CcccCCCCHHHH-----HHHH-HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHH
Q 042526 35 AWNELRLHPLLM-----KSIY-KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKML 108 (284)
Q Consensus 35 ~F~~l~L~~~Ll-----~~L~-~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~ 108 (284)
.|..+++++.+. +.+. .+||. | |+|.++||.+ +.|+|++++||||||||+ |++|++..+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~i-l~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------- 97 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRI-LRKESFAATAPTGVGKTS-FGLAMSLFLAL--------- 97 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHH-HTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHH-HhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------
Confidence 455555554433 4444 48999 9 9999999999 899999999999999998 99999887643
Q ss_pred hhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCc----eeEEEeCCCcchH----HHHHhcCCCcccccc
Q 042526 109 EEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSL----TLAMAAGSPLLTS----EHSNRRKPNKRKRTR 180 (284)
Q Consensus 109 ~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i----~v~~~~G~~~~~q----~~~l~~~~~i~v~~~ 180 (284)
.++++|||+|||+||.|++..++.++..+++ ++++++|+..... ...+.. ++|++.+.
T Consensus 98 -------------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP 163 (1054)
T 1gku_B 98 -------------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTT 163 (1054)
T ss_dssp -------------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEH
T ss_pred -------------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcH
Confidence 3678999999999999999999999998888 8888888754433 334445 88877652
Q ss_pred -----cCCccccccccCCCCCCcccc-----------cccccchh
Q 042526 181 -----KGGEDEKLDSLKWNPLSQPKT-----------TTLLPSSL 209 (284)
Q Consensus 181 -----~~~~~d~l~~lv~dEAd~m~~-----------~gflp~~~ 209 (284)
.+..+.++..+|+||||+|++ +||..+..
T Consensus 164 ~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~ 208 (1054)
T 1gku_B 164 QFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 208 (1054)
T ss_dssp HHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETT
T ss_pred HHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhh
Confidence 112256788999999999999 77766543
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.79 E-value=1.9e-19 Score=178.56 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=117.4
Q ss_pred CccccCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHH
Q 042526 30 STEFDAWN--ELRLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAK 106 (284)
Q Consensus 30 p~~~~~F~--~l~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~ 106 (284)
+.....|. ++++++.+..+|++ +||..|+|+|.++|+.+ +.|+|+++.+|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~i-l~g~d~lv~~pTGsGKTl~~~lpal~~---------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVT-MAGKEVFLVMPTGGGKSLCYQLPALCS---------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHH-HTTCCEEEECCTTSCTTHHHHHHHHTS----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHH-HcCCCEEEEECCCChHHHHHHHHHHHc----------
Confidence 34445555 47899999999998 79999999999999999 899999999999999999999999741
Q ss_pred HHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHH-------hcCCCccccc
Q 042526 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSN-------RRKPNKRKRT 179 (284)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l-------~~~~~i~v~~ 179 (284)
..++|||+||++|+.|+...+..+ ++.+.++.|+....+.... ....++++.+
T Consensus 84 ----------------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 84 ----------------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp ----------------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred ----------------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 247999999999999999999887 6778888877654433221 2345665554
Q ss_pred ccC--------------CccccccccCCCCCCcccccc--cccchhh
Q 042526 180 RKG--------------GEDEKLDSLKWNPLSQPKTTT--LLPSSLA 210 (284)
Q Consensus 180 ~~~--------------~~~d~l~~lv~dEAd~m~~~g--flp~~~~ 210 (284)
.-. ..+.++..+++|||+.+.+.| |-|....
T Consensus 144 pe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 144 PEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred hhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 310 013367889999999999988 8777643
No 36
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.79 E-value=4.2e-20 Score=187.62 Aligned_cols=138 Identities=15% Similarity=0.043 Sum_probs=113.2
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.+|+ +||+||..++|.+ +.|+ |+.++||+|||++|+||++...+. +.+++||+
T Consensus 107 ~lG~-rP~~VQ~~~ip~L-l~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------------------g~~v~VvT 159 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAAL-HLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------------------GNGVHIVT 159 (922)
T ss_dssp HHSC-CCCHHHHHHHHHH-HTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------------------TSCEEEEE
T ss_pred HcCC-CCCHHHHHHHHhH-hcCC--EEEecCCCccHHHHHHHHHHHHHh-----------------------CCCeEEEe
Confidence 3899 8999999999998 8998 999999999999999999754322 35799999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccccc----------------CCccccccccCCC
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRK----------------GGEDEKLDSLKWN 194 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~----------------~~~~d~l~~lv~d 194 (284)
|||+||.|++.++..|..+++++|++++|+.. .+.+.+..+++|++.+.. ...+..+.++|+|
T Consensus 160 pTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~-~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVD 238 (922)
T 1nkt_A 160 VNDYLAKRDSEWMGRVHRFLGLQVGVILATMT-PDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVD 238 (922)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTCC-HHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEET
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCC-HHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEe
Confidence 99999999999999999999999999998865 355666677888776521 1234578889999
Q ss_pred CCCccc-c---------------cccccchhhhcccCC
Q 042526 195 PLSQPK-T---------------TTLLPSSLALMNLTE 216 (284)
Q Consensus 195 EAd~m~-~---------------~gflp~~~~~~~~~~ 216 (284)
|||.|+ | ++|.+++-.++..++
T Consensus 239 EaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 239 EVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp THHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred ChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 999998 5 456677777777776
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.79 E-value=3e-19 Score=180.06 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=121.3
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|++++|++.+.+.|..+||..|+|+|.++|+.++..|++++++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 35799999999999999999999999999999999448899999999999999999999999876532
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc--------cC-C
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--------KG-G 183 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--------~~-~ 183 (284)
+.++||++|||+||.|++..++.+.. .++++..++|+...... . ...+++++.+. .. .
T Consensus 75 ----------~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~-~-~~~~~Iiv~Tpe~l~~~~~~~~~ 141 (715)
T 2va8_A 75 ----------GGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA-W-LKNYDIIITTYEKLDSLWRHRPE 141 (715)
T ss_dssp ----------CSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG-G-GGGCSEEEECHHHHHHHHHHCCG
T ss_pred ----------CCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh-h-cCCCCEEEEcHHHHHHHHhCChh
Confidence 46899999999999999999976654 48888888887544332 2 23667766552 11 2
Q ss_pred ccccccccCCCCCCcccccccccc
Q 042526 184 EDEKLDSLKWNPLSQPKTTTLLPS 207 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m~~~gflp~ 207 (284)
.+.++..+|+||+..+.+.++.+.
T Consensus 142 ~l~~~~~vIiDE~H~l~~~~~~~~ 165 (715)
T 2va8_A 142 WLNEVNYFVLDELHYLNDPERGPV 165 (715)
T ss_dssp GGGGEEEEEECSGGGGGCTTTHHH
T ss_pred HhhccCEEEEechhhcCCcccchH
Confidence 377889999999999876555443
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.78 E-value=2.4e-19 Score=181.04 Aligned_cols=148 Identities=18% Similarity=0.102 Sum_probs=120.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
+|++++|++.+.+.|..+||..|+|+|.++|+.++..|++++++||||||||++|.+|++..+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 699999999999999999999999999999998338899999999999999999999999887642
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCcc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGED 185 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~ 185 (284)
+.++||++|||+||.|++..++.+.. .++++..++|+...... ....+++++.+. ....+
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~~~~~~~~l 136 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE--WLGKYDIIIATAEKFDSLLRHGSSWI 136 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG--GGGGCSEEEECHHHHHHHHHHTCTTG
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc--ccCCCCEEEECHHHHHHHHHcChhhh
Confidence 46899999999999999999987765 48889888886433321 234567766552 11236
Q ss_pred ccccccCCCCCCcccccccccc
Q 042526 186 EKLDSLKWNPLSQPKTTTLLPS 207 (284)
Q Consensus 186 d~l~~lv~dEAd~m~~~gflp~ 207 (284)
.++..+|+|||..+.+.++-+.
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~ 158 (720)
T 2zj8_A 137 KDVKILVADEIHLIGSRDRGAT 158 (720)
T ss_dssp GGEEEEEEETGGGGGCTTTHHH
T ss_pred hcCCEEEEECCcccCCCcccHH
Confidence 7889999999998876554443
No 39
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.7e-20 Score=182.53 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=104.6
Q ss_pred cCccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHH
Q 042526 29 ISTEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQR--KDVIGAAETESGKTRAFGLPALQRLLEEREKAAK 106 (284)
Q Consensus 29 ~p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G--~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~ 106 (284)
.|..+..|...++++.++++|.+.||..|+++|.+||+.+ +.| ++++++||||||||++|++|++..+...
T Consensus 114 ~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i-~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------ 186 (508)
T 3fho_A 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLL-LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------ 186 (508)
T ss_dssp -------------------------CEECCCTTSSSHHHH-HCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------
T ss_pred cccccccccccccccccccccccccccCcHHHHHHHHHHH-HcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------
Confidence 3555667778889999999999999999999999999999 776 9999999999999999999999876432
Q ss_pred HHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc------
Q 042526 107 MLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------ 180 (284)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------ 180 (284)
..++++|||+||++|+.|+++.++.+....++.+...+|+.... .....+++++.+.
T Consensus 187 --------------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~ 249 (508)
T 3fho_A 187 --------------VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK---GAKIDAQIVIGTPGTVMDL 249 (508)
T ss_dssp --------------CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-------------CCCCSEEEECHHHHHHH
T ss_pred --------------CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc---cccCCCCEEEECHHHHHHH
Confidence 23668999999999999999999999887777666555543222 1223566665541
Q ss_pred ---cCCccccccccCCCCCCcccc-cccccchhhhcccCCCCCC
Q 042526 181 ---KGGEDEKLDSLKWNPLSQPKT-TTLLPSSLALMNLTEGKPG 220 (284)
Q Consensus 181 ---~~~~~d~l~~lv~dEAd~m~~-~gflp~~~~~~~~~~r~~~ 220 (284)
....++++..+|+|||+.+.+ .+|......++...+...+
T Consensus 250 l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 250 MKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp HHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCE
T ss_pred HHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCe
Confidence 122467888999999999877 6777776666665554444
No 40
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.77 E-value=4.1e-19 Score=173.73 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=114.7
Q ss_pred ccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 33 FDAWNELRLHPLLMKSIYK-LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~-~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
|.+|++|+|++.+.+.|.+ +||..|+|+|.++|+.+ +.|+|+++.+|||||||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~i-l~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTV-LSGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 4689999999999999998 89999999999999999 899999999999999999999998731
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHH----HHh-cCCCccccccc----C
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEH----SNR-RKPNKRKRTRK----G 182 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~----~l~-~~~~i~v~~~~----~ 182 (284)
...+|||+||++|+.|+...+..+ ++.+.++.|+....+.. .+. ..+++++.+.- .
T Consensus 65 -----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~ 129 (523)
T 1oyw_A 65 -----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129 (523)
T ss_dssp -----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST
T ss_pred -----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh
Confidence 235899999999999999998865 67777777775544322 222 33566554411 0
Q ss_pred -----CccccccccCCCCCCcccccc--cccch
Q 042526 183 -----GEDEKLDSLKWNPLSQPKTTT--LLPSS 208 (284)
Q Consensus 183 -----~~~d~l~~lv~dEAd~m~~~g--flp~~ 208 (284)
....++..+|+|||+.+.+.| |-|..
T Consensus 130 ~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~ 162 (523)
T 1oyw_A 130 NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (523)
T ss_dssp THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred HHHHHHhhCCCCEEEEeCccccCcCCCccHHHH
Confidence 112567789999999999887 65554
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.77 E-value=3.9e-19 Score=172.26 Aligned_cols=137 Identities=11% Similarity=-0.015 Sum_probs=105.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
++...|+|+|.++|+.+ +.|+|+++++|||||||++|++|+++.+... ....++++|||+|
T Consensus 3 ~~~~~~~~~Q~~~i~~~-~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P 63 (556)
T 4a2p_A 3 METKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 63 (556)
T ss_dssp -----CCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECS
T ss_pred CCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeC
Confidence 45568999999999999 8999999999999999999999999877542 1123678999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc----------cCCccccccccCCCCCCccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR----------KGGEDEKLDSLKWNPLSQPK 200 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~dEAd~m~ 200 (284)
|++|+.|++..+..+....++.+..++|+. ...+...+..++++++.+. ....+..+..+|+|||+++.
T Consensus 64 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~ 143 (556)
T 4a2p_A 64 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 143 (556)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC
Confidence 999999999999999988899998888875 3344555666788876651 11257788999999999998
Q ss_pred ccccccc
Q 042526 201 TTTLLPS 207 (284)
Q Consensus 201 ~~gflp~ 207 (284)
+.+++..
T Consensus 144 ~~~~~~~ 150 (556)
T 4a2p_A 144 GNHPYNV 150 (556)
T ss_dssp TTSHHHH
T ss_pred CcchHHH
Confidence 8775443
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.77 E-value=9.3e-19 Score=175.21 Aligned_cols=137 Identities=10% Similarity=-0.072 Sum_probs=107.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCe
Q 042526 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHL 124 (284)
Q Consensus 45 Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (284)
+..+|..+||..|+|+|.++|+.+ +.|+|+|+++|||||||++|++|+++.+.... ...+.
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~-l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------~~~~~ 62 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------QGQKG 62 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------TTCCC
T ss_pred CCCcccccCCCCccHHHHHHHHHH-HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------cCCCC
Confidence 346788899999999999999998 89999999999999999999999998775421 11236
Q ss_pred EEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc----------cCCccccccccCC
Q 042526 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR----------KGGEDEKLDSLKW 193 (284)
Q Consensus 125 ~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~ 193 (284)
++|||+||++|+.|++++++.++...++++..++|+. ...+...+...+++++.+. ....+.++..+|+
T Consensus 63 ~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vVi 142 (696)
T 2ykg_A 63 KVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 142 (696)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEE
Confidence 7999999999999999999999988889998888874 4455666667788877651 1125778899999
Q ss_pred CCCCccc
Q 042526 194 NPLSQPK 200 (284)
Q Consensus 194 dEAd~m~ 200 (284)
|||+++.
T Consensus 143 DEaH~~~ 149 (696)
T 2ykg_A 143 DECHNTS 149 (696)
T ss_dssp ETGGGCS
T ss_pred eCCCccc
Confidence 9999954
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.76 E-value=9e-19 Score=169.23 Aligned_cols=129 Identities=12% Similarity=-0.029 Sum_probs=106.4
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+|+|.++|+.+ +.|+|+++++|||||||++|++|+++.+... ....+.++|||+||++|
T Consensus 4 ~~~~~Q~~~i~~~-~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHH-hCCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHHH
Confidence 5999999999999 8999999999999999999999999877552 11236789999999999
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCc-chHHHHHhcCCCcccccc----------cCCccccccccCCCCCCcccccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPL-LTSEHSNRRKPNKRKRTR----------KGGEDEKLDSLKWNPLSQPKTTT 203 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~-~~q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~dEAd~m~~~g 203 (284)
+.|++..+..++...++.+..++|+.. ..+...+..++++++.+. ....+..+..+|+|||+++...+
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 999999999999988999988888753 344455666788876651 11257788999999999988775
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.75 E-value=3.7e-19 Score=179.28 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=115.2
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 35 AWNELR--LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 35 ~F~~l~--L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
+|++|+ |++.+.++|.++||..|+|+|.++|+.+ ..|++++++||||||||++|.+|++..+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i-~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKV-FSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHH-TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 689998 9999999999999999999999999997 899999999999999999999999986532
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc--------cC-C
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--------KG-G 183 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--------~~-~ 183 (284)
+.++||++|||+||.|++..++.+.. .++++..++|+...... ....+++++.+. .. .
T Consensus 68 ----------~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~l~~~~~ 134 (702)
T 2p6r_A 68 ----------GGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE--HLGDCDIIVTTSEKADSLIRNRAS 134 (702)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS--CSTTCSEEEEEHHHHHHHHHTTCS
T ss_pred ----------CCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh--hccCCCEEEECHHHHHHHHHcChh
Confidence 35799999999999999999976654 58889888887544321 223567766552 11 2
Q ss_pred ccccccccCCCCCCccccccccc
Q 042526 184 EDEKLDSLKWNPLSQPKTTTLLP 206 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m~~~gflp 206 (284)
.+.++..+|+|||..+.+.++-+
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~ 157 (702)
T 2p6r_A 135 WIKAVSCLVVDEIHLLDSEKRGA 157 (702)
T ss_dssp GGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHhhcCEEEEeeeeecCCCCccc
Confidence 37789999999999987755433
No 45
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.75 E-value=8.6e-19 Score=177.89 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=107.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|| +||+||..+||.+ +.|+ |++++||||||++|++|++...+ .+.+++||+|
T Consensus 76 lG~-~Pt~VQ~~~ip~L-lqG~--IaeakTGeGKTLvf~Lp~~L~aL-----------------------~G~qv~VvTP 128 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL-HEGK--IAEMKTGEGKTLVATLAVALNAL-----------------------TGKGVHVVTV 128 (997)
T ss_dssp TCC-CCCHHHHHHHHHH-HTTS--EEECCSTHHHHHHHHHHHHHHHT-----------------------TCSCCEEEES
T ss_pred hCC-CCcHHHHhhcccc-cCCc--eeeccCCCchHHHHHHHHHHHHH-----------------------hCCCEEEEeC
Confidence 899 8999999999998 8998 99999999999999999974332 1457999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccccC----------------Cccc---cccccC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRKG----------------GEDE---KLDSLK 192 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~~----------------~~~d---~l~~lv 192 (284)
|++||.|++..+..|..+++++|++++|+.. .+...+..+++|++.|.-. ..+. .+..+|
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~-~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHAST-PAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCC-HHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEE
Confidence 9999999999999999999999999998865 4556667788887765211 1244 688899
Q ss_pred CCCCCccc-ccccccchh
Q 042526 193 WNPLSQPK-TTTLLPSSL 209 (284)
Q Consensus 193 ~dEAd~m~-~~gflp~~~ 209 (284)
+||||.|+ +.+.-|.++
T Consensus 208 IDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 208 IDEVDSILIDEARTPLII 225 (997)
T ss_dssp ETTHHHHTTSSTTSCEEE
T ss_pred EechHHHHHhCCCCCeee
Confidence 99999976 666766443
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.8e-19 Score=186.57 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=122.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKG 112 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~ 112 (284)
..+|..+++++.+..++...++..|||+|.+||+.+ +.|+|++++|+||||||++|++|++..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i-~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------------- 225 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------- 225 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHH-TTTCCEEEECCSSSHHHHHHHHHHHHHHH--------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHHh--------------
Confidence 457888899998888887777888999999999998 99999999999999999999999998762
Q ss_pred hhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCC
Q 042526 113 EEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGG 183 (284)
Q Consensus 113 ~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~ 183 (284)
.+.++||++|||+||.|++..+..+.. .+.+++|+... ...+++++.|. ...
T Consensus 226 ---------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~ 286 (1108)
T 3l9o_A 226 ---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI------NPDAGCLVMTTEILRSMLYRGSE 286 (1108)
T ss_dssp ---------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC------CCSCSEEEEEHHHHHHHHHHCSS
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc------CCCCCEEEeChHHHHHHHHcCcc
Confidence 256899999999999999999998765 46667776542 23456666551 122
Q ss_pred ccccccccCCCCCCcccccccccchhhhcccCCCCC
Q 042526 184 EDEKLDSLKWNPLSQPKTTTLLPSSLALMNLTEGKP 219 (284)
Q Consensus 184 ~~d~l~~lv~dEAd~m~~~gflp~~~~~~~~~~r~~ 219 (284)
.+.++..+|+|||+.|.+.+|.+....++..++...
T Consensus 287 ~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 287 VMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp HHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred ccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 477899999999999999888777666655554443
No 47
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.74 E-value=3.6e-18 Score=174.44 Aligned_cols=138 Identities=11% Similarity=-0.026 Sum_probs=106.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
-+|+..|+|+|..+|+.+ +.|+|+|+++|||||||++|++|++..+... ....+.++|||+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~-l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLA 303 (797)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEEC
T ss_pred hcCCCCCCHHHHHHHHHH-HhCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEEe
Confidence 468999999999999999 8999999999999999999999999877542 112367899999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc----------cCCccccccccCCCCCCcc
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR----------KGGEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~dEAd~m 199 (284)
||++|+.|++..++.+....++++++++|+. ...+...+..++++++.+. ....+.++..+|+|||+++
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~ 383 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGC
T ss_pred CCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcccc
Confidence 9999999999999999988899998888875 3344566667888877651 1125677899999999998
Q ss_pred cccccccc
Q 042526 200 KTTTLLPS 207 (284)
Q Consensus 200 ~~~gflp~ 207 (284)
...+.+..
T Consensus 384 ~~~~~~~~ 391 (797)
T 4a2q_A 384 TGNHPYNV 391 (797)
T ss_dssp STTSHHHH
T ss_pred CCCccHHH
Confidence 87654333
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=146.13 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=99.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.....|+|+|.++++.+ +.|+++++.+|||||||++|++|++..+..... ...+.++||++|
T Consensus 29 ~~~~~l~~~Q~~~i~~~-~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----------------~~~~~~~lil~p 90 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPA-LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----------------ASEPGKVIVLVN 90 (216)
T ss_dssp SCCCCCCHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----------------TTCCCCEEEEES
T ss_pred cCCCCchHHHHHHHHHH-hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----------------ccCCCcEEEEEC
Confidence 45568999999999998 889999999999999999999999987755421 123568999999
Q ss_pred CHHHHHH-HHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc--------c-------CCccccccccCCC
Q 042526 132 TRELALQ-VLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR--------K-------GGEDEKLDSLKWN 194 (284)
Q Consensus 132 TReLa~Q-i~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~--------~-------~~~~d~l~~lv~d 194 (284)
|++|+.| +...+..+... ++.+..+.|+. ...+...+...+++++.+. . ...+..+..+|+|
T Consensus 91 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 91 KVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp SHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred HHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 9999999 78888888765 67777777763 3333334445667765541 0 1346788899999
Q ss_pred CCCcccccccccchhh
Q 042526 195 PLSQPKTTTLLPSSLA 210 (284)
Q Consensus 195 EAd~m~~~gflp~~~~ 210 (284)
||+++...+|+..++.
T Consensus 170 Eah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 170 ECHHTNKEAVYNNIMR 185 (216)
T ss_dssp TC-------CHHHHHH
T ss_pred CchhhccCCcHHHHHH
Confidence 9999988777777653
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=1.5e-17 Score=181.21 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAP 120 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (284)
|++..+++|...+|..++|+|.+||+.++..+.|++++||||||||++|.+|++..+...
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 567888999999999999999999999966788999999999999999999999988653
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHhh-hhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc--------c---CCccccc
Q 042526 121 KGHLRALIINPTRELALQVLMVASP-SLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--------K---GGEDEKL 188 (284)
Q Consensus 121 ~~~~~aLIL~PTReLa~Qi~~~~~~-l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--------~---~~~~d~l 188 (284)
.+.++||++|||+||.|++..+.. |...++++|..++|+.... ......++|++.|. . ...+.+|
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~--~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v 1047 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD--LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNI 1047 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH--HHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSC
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcc--hhhcCCCCEEEECHHHHHHHHhCccccccccee
Confidence 245799999999999999999975 6667899999988875432 33445677776651 1 1135678
Q ss_pred cccCCCCCCccccc
Q 042526 189 DSLKWNPLSQPKTT 202 (284)
Q Consensus 189 ~~lv~dEAd~m~~~ 202 (284)
..+|+||++++.+.
T Consensus 1048 ~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 1048 NLFVVDEVHLIGGE 1061 (1724)
T ss_dssp SEEEECCGGGGGST
T ss_pred eEEEeechhhcCCC
Confidence 89999999987653
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.69 E-value=5e-17 Score=165.61 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCC------CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042526 43 PLLMKSIYKLGFKESTSILKARIPALAHQR------KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAE 116 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G------~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~ 116 (284)
+.+...+..++| .||++|.+||+.+ +.+ +|++++|+||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I-~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------------- 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEI-RNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------------- 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHH-HHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHH-HhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------------
Confidence 344455678999 8999999999998 554 699999999999999999999987632
Q ss_pred hcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHH----HHHhcC-CCcccccccC----Ccccc
Q 042526 117 KYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSE----HSNRRK-PNKRKRTRKG----GEDEK 187 (284)
Q Consensus 117 ~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~----~~l~~~-~~i~v~~~~~----~~~d~ 187 (284)
+.++|||+||++||.|++..+..+....++++++++|+....+. ..+..+ +++++.+.-. ..+.+
T Consensus 417 ------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 417 ------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp ------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred ------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 46899999999999999999999998889999999988655432 334444 7777765321 35678
Q ss_pred ccccCCCCCCcc
Q 042526 188 LDSLKWNPLSQP 199 (284)
Q Consensus 188 l~~lv~dEAd~m 199 (284)
+..+|+||++++
T Consensus 491 l~lVVIDEaHr~ 502 (780)
T 1gm5_A 491 LGLVIIDEQHRF 502 (780)
T ss_dssp CCEEEEESCCCC
T ss_pred CceEEecccchh
Confidence 889999999985
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.68 E-value=2.5e-17 Score=171.07 Aligned_cols=135 Identities=11% Similarity=-0.022 Sum_probs=103.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
-.|+..|+|+|.++|+.+ +.|+|++++++||||||++|++|++..+... ....+.++|||+
T Consensus 243 l~~~~~~r~~Q~~ai~~i-l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~vLvl~ 303 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLA 303 (936)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCCCEEEEC
T ss_pred ccCCCCCCHHHHHHHHHH-HcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCCeEEEEe
Confidence 357889999999999999 8999999999999999999999998765432 112256799999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc----------cCCccccccccCCCCCCcc
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR----------KGGEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~----------~~~~~d~l~~lv~dEAd~m 199 (284)
||++|+.|++..++.+....++++.+++|+. ...+...+..++++++.+. ....+..+..+|+|||+++
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~ 383 (936)
T 4a2w_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (936)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGC
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcccc
Confidence 9999999999999999998899998888875 3344555666788877651 1124677889999999998
Q ss_pred ccccc
Q 042526 200 KTTTL 204 (284)
Q Consensus 200 ~~~gf 204 (284)
...+.
T Consensus 384 ~~~~~ 388 (936)
T 4a2w_A 384 TGNHP 388 (936)
T ss_dssp STTCH
T ss_pred CCCcc
Confidence 87653
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.62 E-value=9.1e-18 Score=167.33 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=95.2
Q ss_pred ccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042526 36 WNE-LRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEE 114 (284)
Q Consensus 36 F~~-l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~ 114 (284)
|.. +++++.++++|... +..|+|+|+++||.+ +.|+|++++||||||||++|++|+++.+..
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l-~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------------- 213 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALK--------------- 213 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGG-STTCEEEECCCTTSSTTTTHHHHHHHHHHH---------------
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------------
Confidence 444 66788877777654 589999999999988 999999999999999999999999998754
Q ss_pred hhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccc---cc-------ccCCc
Q 042526 115 AEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRK---RT-------RKGGE 184 (284)
Q Consensus 115 ~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v---~~-------~~~~~ 184 (284)
.++++|||+|||+||.|++..+.. ..+. +.+.... ....+...+ .. .....
T Consensus 214 -------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~~~ 274 (618)
T 2whx_A 214 -------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK-----SDHTGREIVDLMCHATFTTRLLSSTR 274 (618)
T ss_dssp -------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHCSS
T ss_pred -------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce-----eccCCCceEEEEChHHHHHHHhcccc
Confidence 257899999999999999998862 2222 1111100 001111111 00 01123
Q ss_pred cccccccCCCCCCcccccccccchhhhccc
Q 042526 185 DEKLDSLKWNPLSQPKTTTLLPSSLALMNL 214 (284)
Q Consensus 185 ~d~l~~lv~dEAd~m~~~gflp~~~~~~~~ 214 (284)
++++..+|+|||++| +++|......++..
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~ 303 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTR 303 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHH
Confidence 788999999999999 77777666554443
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.62 E-value=1.1e-15 Score=159.76 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=105.6
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEe
Q 042526 51 KLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIIN 130 (284)
Q Consensus 51 ~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~ 130 (284)
.++|+ |+|+|.++|+.+ +.|+|++++||||||||++|++|++..+. .+.++||++
T Consensus 35 ~~~f~-l~~~Q~~aI~~i-l~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~ 89 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHL-EQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTS 89 (997)
T ss_dssp CCSSC-CCHHHHHHHHHH-HTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred hCCCC-CCHHHHHHHHHH-HcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEe
Confidence 46776 899999999999 89999999999999999999999876431 256899999
Q ss_pred cCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc---------ccCCccccccccCCCCCCcccc
Q 042526 131 PTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT---------RKGGEDEKLDSLKWNPLSQPKT 201 (284)
Q Consensus 131 PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~---------~~~~~~d~l~~lv~dEAd~m~~ 201 (284)
||++|+.|++..+..+.. ++.+.+++|+.... ...++++.+ .....+.++..+|+|||+.+.+
T Consensus 90 PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 90 PIKALSNQKFRDFKETFD--DVNIGLITGDVQIN------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161 (997)
T ss_dssp SCGGGHHHHHHHHHTTC----CCEEEECSSCEEC------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT
T ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc
Confidence 999999999999988643 67788888875432 234555544 1223567899999999999999
Q ss_pred cccccchhhhcccCCCCC
Q 042526 202 TTLLPSSLALMNLTEGKP 219 (284)
Q Consensus 202 ~gflp~~~~~~~~~~r~~ 219 (284)
.+|-+....++...+...
T Consensus 162 ~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 162 QDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp TCTTCCHHHHHHHSCTTC
T ss_pred cchHHHHHHHHHhcccCC
Confidence 988887766655554433
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.62 E-value=4.2e-16 Score=156.03 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=103.5
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+|+|.++|+.+ +.|+|+++++|||||||++|++|++..+..... ...+.++|||+||++|
T Consensus 7 ~l~~~Q~~~i~~i-l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-----------------~~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 7 QLRPYQMEVAQPA-LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-----------------ASEPGKVIVLVNKVLL 68 (699)
T ss_dssp CCCHHHHHHHHHH-HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-----------------HTCCCCBCCEESCSHH
T ss_pred CccHHHHHHHHHH-HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-----------------cCCCCeEEEEECCHHH
Confidence 5999999999999 889999999999999999999999998876531 1123579999999999
Q ss_pred HHHH-HHHHhhhhcCCCceeEEEeCCC-cchHHHHHhcCCCcccccc---------------cCCccccccccCCCCCCc
Q 042526 136 ALQV-LMVASPSLKSNSLTLAMAAGSP-LLTSEHSNRRKPNKRKRTR---------------KGGEDEKLDSLKWNPLSQ 198 (284)
Q Consensus 136 a~Qi-~~~~~~l~~~~~i~v~~~~G~~-~~~q~~~l~~~~~i~v~~~---------------~~~~~d~l~~lv~dEAd~ 198 (284)
+.|+ +..++.+... ++.+..+.|+. ...+...+....++++.+. ....+..+..+|+|||++
T Consensus 69 ~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 69 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 9999 9999998875 47787777774 4444456667788866551 113567888999999999
Q ss_pred ccccccccch
Q 042526 199 PKTTTLLPSS 208 (284)
Q Consensus 199 m~~~gflp~~ 208 (284)
+...+++...
T Consensus 148 ~~~~~~~~~i 157 (699)
T 4gl2_A 148 TNKEAVYNNI 157 (699)
T ss_dssp CBTTBSSCSH
T ss_pred cCccchHHHH
Confidence 8665555544
No 55
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-16 Score=163.44 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=99.3
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEE
Q 042526 49 IYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI 128 (284)
Q Consensus 49 L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLI 128 (284)
...++|. |+|+|.+||+.+ ..|++++++||||||||++|++|++..+. .+.++||
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l-~~g~~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~ 134 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI-DRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIY 134 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH-HHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEE
T ss_pred HHhCCCC-CCHHHHHHHHHH-HcCCCEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEE
Confidence 4457886 999999999998 89999999999999999999999987652 2568999
Q ss_pred EecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCccccccccCCCCCCcc
Q 042526 129 INPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 129 L~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~d~l~~lv~dEAd~m 199 (284)
++||++||.|++..+..+.. .+.+++|+.... ...++++.+. ....+.++..+|+|||+.|
T Consensus 135 l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l 204 (1010)
T 2xgj_A 135 TSPIKALSNQKYRELLAEFG----DVGLMTGDITIN------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 204 (1010)
T ss_dssp EESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred ECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhh
Confidence 99999999999999998765 567777775432 2345655441 2245778999999999999
Q ss_pred cccccccch
Q 042526 200 KTTTLLPSS 208 (284)
Q Consensus 200 ~~~gflp~~ 208 (284)
.+.++-...
T Consensus 205 ~d~~rg~~~ 213 (1010)
T 2xgj_A 205 RDKERGVVW 213 (1010)
T ss_dssp GCTTTHHHH
T ss_pred cccchhHHH
Confidence 887654433
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.61 E-value=5.7e-16 Score=168.93 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=103.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
||+.++++|++++|.++.++.|++++||||||||++|.+|++..+.+... ........+.++||++||
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~------------~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHIN------------MDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCC------------TTSSCCTTSCEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcc------------ccccccCCCCEEEEECCH
Confidence 89999999999999986789999999999999999999999998865310 001223457799999999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc--------cCC---ccccccccCCCCCCcc
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR--------KGG---EDEKLDSLKWNPLSQP 199 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~--------~~~---~~d~l~~lv~dEAd~m 199 (284)
|+||.|++..+.......|++|..++|+..... .....++|++.|. ... .++.|..+|+||+-++
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~--~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCK--EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCC--TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCc--cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhc
Confidence 999999999999988889999999988754332 2234577776651 111 2567888999998543
No 57
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=139.57 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=94.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
....++++|.++|+.+ ..|++++++|+||||||++|.++++..+.... ....+++|+++||
T Consensus 58 ~~~p~~~~q~~~i~~i-~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~~~~~~l~~~p~ 118 (235)
T 3llm_A 58 ELLPVKKFESEILEAI-SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RAAECNIVVTQPR 118 (235)
T ss_dssp HTSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CGGGCEEEEEESS
T ss_pred hcCChHHHHHHHHHHH-hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CCCceEEEEeccc
Confidence 3445799999999999 99999999999999999999999988665431 1235689999999
Q ss_pred HHHHHHHHHHHhhhhc-CCCceeEEEeCCCcchHHHHHhcCCCcccccc------cCCccccccccCCCCCCcc-ccccc
Q 042526 133 RELALQVLMVASPSLK-SNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------KGGEDEKLDSLKWNPLSQP-KTTTL 204 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------~~~~~d~l~~lv~dEAd~m-~~~gf 204 (284)
|+||.|++..+..... ..+..+....... .......+++++.+. ....++.+..+|+||||.| .+++|
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFE----SILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTE----EECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechh----hccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHH
Confidence 9999999887765433 2333332211111 001112344544441 0013678899999999996 89998
Q ss_pred ccchhhhc
Q 042526 205 LPSSLALM 212 (284)
Q Consensus 205 lp~~~~~~ 212 (284)
+...+..+
T Consensus 195 ~~~~l~~i 202 (235)
T 3llm_A 195 LLVVLRDV 202 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 86554443
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.58 E-value=2.5e-16 Score=151.14 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcE-EEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 53 GFKESTSILKARIPALAHQRKDV-IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dv-iv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
|+..|+|+|+ +||.+ +.|+|+ +++||||||||++|++|++..+.. .++++|||+|
T Consensus 1 G~~q~~~iq~-~i~~~-l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------------------~~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDI-FRKKRLTIMDLHPGAGKTKRILPSIVREALL----------------------RRLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGG-GSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------------------TTCCEEEEES
T ss_pred CCCCCCCcHH-HHHHH-HhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------------------cCCcEEEECC
Confidence 7899999986 79998 788887 999999999999999999987654 2578999999
Q ss_pred CHHHHHHHHHHHh
Q 042526 132 TRELALQVLMVAS 144 (284)
Q Consensus 132 TReLa~Qi~~~~~ 144 (284)
||+||.|++..+.
T Consensus 57 tr~La~Q~~~~l~ 69 (451)
T 2jlq_A 57 TRVVAAEMEEALR 69 (451)
T ss_dssp SHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999885
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.57 E-value=3.9e-15 Score=133.71 Aligned_cols=121 Identities=14% Similarity=-0.033 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+|+|.++++.+ +.+.+.+++++||||||++|++++...+.. ...++|||+||++|
T Consensus 113 ~l~~~Q~~ai~~~-l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~L 169 (282)
T 1rif_A 113 EPHWYQKDAVFEG-LVNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHH-HHHSEEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHHH
T ss_pred CccHHHHHHHHHH-HhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHHH
Confidence 7999999999998 677888999999999999998887765432 13379999999999
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc------cCCccccccccCCCCCCcccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------KGGEDEKLDSLKWNPLSQPKT 201 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------~~~~~d~l~~lv~dEAd~m~~ 201 (284)
+.|+++.+..+.......+..++|+..... ......++++.+. ....++++..+|+|||+++..
T Consensus 170 ~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDD--KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTT--CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred HHHHHHHHHHhcccccceEEEEeCCCcchh--hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc
Confidence 999999999987766667777777654332 2223455554441 112467888999999999875
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=1.5e-14 Score=153.05 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHHcC----CC--cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 39 LRLHPLLMKSIY-KLGFKESTSILKARIPALAHQ----RK--DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 39 l~L~~~Ll~~L~-~~g~~~pT~iQ~~aip~il~~----G~--dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
+++++.+.+.+. .++|+ |||+|..||+.+ +. |+ |++++++||||||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~i-l~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAV-LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHH-HHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-------------
Confidence 456777777764 47887 799999999998 44 66 9999999999999999999876432
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHH----HHHhc-CCCcccccc----cC
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSE----HSNRR-KPNKRKRTR----KG 182 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~----~~l~~-~~~i~v~~~----~~ 182 (284)
.+.++|||+||++||.|++..+..+....++.+.++.|....... ..+.. .+++++.+. ..
T Consensus 651 ----------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~ 720 (1151)
T 2eyq_A 651 ----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 720 (1151)
T ss_dssp ----------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC
T ss_pred ----------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC
Confidence 256899999999999999999998877778888888876443332 23444 377776652 22
Q ss_pred CccccccccCCCCCCcc
Q 042526 183 GEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 183 ~~~d~l~~lv~dEAd~m 199 (284)
..+.++..+|+||++++
T Consensus 721 ~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 721 VKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp CCCSSEEEEEEESGGGS
T ss_pred ccccccceEEEechHhc
Confidence 34678889999999993
No 61
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.55 E-value=8.4e-15 Score=137.62 Aligned_cols=123 Identities=13% Similarity=0.043 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+|+|..+++.+ +.+ ++++.++||+|||++|+++++..+.. .+.++|||+||++|
T Consensus 9 ~l~~~Q~~~i~~~-~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------------------~~~~~liv~P~~~L 64 (494)
T 1wp9_A 9 QPRIYQEVIYAKC-KET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------------------YGGKVLMLAPTKPL 64 (494)
T ss_dssp CCCHHHHHHHHHG-GGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------------------SCSCEEEECSSHHH
T ss_pred CccHHHHHHHHHH-hhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------------------CCCeEEEEECCHHH
Confidence 5999999999998 777 99999999999999999999887651 35679999999999
Q ss_pred HHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc---------cCCccccccccCCCCCCccccc
Q 042526 136 ALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR---------KGGEDEKLDSLKWNPLSQPKTT 202 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~---------~~~~~d~l~~lv~dEAd~m~~~ 202 (284)
+.|++..+..+.......+.++.|+........+...+++++.+. ....+.++..+|+|||..+.+.
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC
Confidence 999999999887555568888888876665555555677766551 1234667889999999998754
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.55 E-value=6.4e-15 Score=142.31 Aligned_cols=122 Identities=14% Similarity=-0.035 Sum_probs=96.7
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..|+|+|..||+.+ +.+++++++++||||||++|++|+...+.. ...++|||+||++
T Consensus 112 ~~l~~~Q~~ai~~~-~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~~ 168 (510)
T 2oca_A 112 IEPHWYQKDAVFEG-LVNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTA 168 (510)
T ss_dssp ECCCHHHHHHHHHH-HHHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSHH
T ss_pred CCCCHHHHHHHHHH-HhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcHH
Confidence 37999999999998 788999999999999999999988876542 2348999999999
Q ss_pred HHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc------cCCccccccccCCCCCCcccc
Q 042526 135 LALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR------KGGEDEKLDSLKWNPLSQPKT 201 (284)
Q Consensus 135 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~------~~~~~d~l~~lv~dEAd~m~~ 201 (284)
|+.|++..+..+....++.+..+.|+...... +....++++.+. ....+.++..+++||+.++..
T Consensus 169 L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDDK--YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG--GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred HHHHHHHHHHHhhcCCccceEEEecCCccccc--cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc
Confidence 99999999999877767778777776444322 445567766541 113467788999999999765
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.54 E-value=8.8e-17 Score=161.57 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=88.0
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHHc------CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhh
Q 042526 48 SIYKLGFK-----ESTSILK-----ARIPALAH------QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEK 111 (284)
Q Consensus 48 ~L~~~g~~-----~pT~iQ~-----~aip~il~------~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~ 111 (284)
+|..+||. .|||||+ ++||.+ + .|+|++++|+||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~-l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------ 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEA-YNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------ 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCC-CCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHH-hhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------------
Confidence 56778888 9999999 999998 6 89999999999999999999999987654
Q ss_pred hhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccc---c-------ccc
Q 042526 112 GEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRK---R-------TRK 181 (284)
Q Consensus 112 ~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v---~-------~~~ 181 (284)
.++++|||+|||+||.|++..+..+. +. ...+.. . ....|..++ . ...
T Consensus 269 ----------~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l-~-----~v~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 269 ----------KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAV-Q-----REHSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp ----------TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHS
T ss_pred ----------CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eecccc-c-----ccCCHHHHHHHHHhhhhHHHHhc
Confidence 25789999999999999999987552 11 111100 0 001111110 0 001
Q ss_pred CCccccccccCCCCCCcc-----cccccccchh
Q 042526 182 GGEDEKLDSLKWNPLSQP-----KTTTLLPSSL 209 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~m-----~~~gflp~~~ 209 (284)
...+.++..+|+|||+++ ..++|+....
T Consensus 327 ~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 327 PLRVPNYNLFVMDEAHFTDPASIAARGYIATRV 359 (673)
T ss_dssp SSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccceEEEEeCCcccCccHHHHHHHHHHhc
Confidence 124678999999999998 5666665543
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.50 E-value=2e-15 Score=150.90 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=95.3
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
|...|+.+|+.++..++|++++||||||||++|++|+++ .+.++|||+|||+||
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------------------~g~~vLVl~PTReLA 270 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------------------QGYKVLVLNPSVAAT 270 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------------------TTCCEEEEESCHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------------------CCCeEEEEcchHHHH
Confidence 444455555555478999999999999999999999874 145799999999999
Q ss_pred HHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc------ccCCccccccccCCCCCCcccccccccchhh
Q 042526 137 LQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT------RKGGEDEKLDSLKWNPLSQPKTTTLLPSSLA 210 (284)
Q Consensus 137 ~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~------~~~~~~d~l~~lv~dEAd~m~~~gflp~~~~ 210 (284)
.|++..+... ++..+...+|+.. +..+.++++.+ .....+.++..+|+||| +|++++|.++...
T Consensus 271 ~Qia~~l~~~---~g~~vg~~vG~~~------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEA-H~l~~~~~~~l~~ 340 (666)
T 3o8b_A 271 LGFGAYMSKA---HGIDPNIRTGVRT------ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDEC-HSTDSTTILGIGT 340 (666)
T ss_dssp HHHHHHHHHH---HSCCCEEECSSCE------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTT-TCCSHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCeeEEECcEe------ccCCCCEEEECcHHHHhCCCcccCcccEEEEccc-hhcCccHHHHHHH
Confidence 9998866543 3455666666643 34456665543 23345667999999999 9999999888877
Q ss_pred hcccCCCCCCC
Q 042526 211 LMNLTEGKPGK 221 (284)
Q Consensus 211 ~~~~~~r~~~~ 221 (284)
++...+..++.
T Consensus 341 Il~~l~~~~~~ 351 (666)
T 3o8b_A 341 VLDQAETAGAR 351 (666)
T ss_dssp HHHHTTTTTCS
T ss_pred HHHhhhhcCCc
Confidence 77777666653
No 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.48 E-value=7.3e-14 Score=137.21 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=70.6
Q ss_pred CCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEE
Q 042526 53 GFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALII 129 (284)
Q Consensus 53 g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL 129 (284)
|| .|.|.|..++..+ +..|+|++++||||||||++|++|++. . ++++||+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~----------------------~~~v~i~ 53 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----V----------------------KPKVLFV 53 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----H----------------------CSEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----C----------------------CCeEEEE
Confidence 45 5899999977654 368999999999999999999999987 1 4689999
Q ss_pred ecCHHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 130 NPTRELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 130 ~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
+||++|+.|+.+++..+....+++++++.|.
T Consensus 54 ~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 54 VRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp ESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred cCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 9999999999999999988888888887774
No 66
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.46 E-value=1.1e-13 Score=132.41 Aligned_cols=124 Identities=14% Similarity=0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCC------------------CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHH
Q 042526 43 PLLMKSIYKLGFK------------------ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKA 104 (284)
Q Consensus 43 ~~Ll~~L~~~g~~------------------~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~ 104 (284)
..+++.|...|+. .|+|+|.++++.+ +.+++++++++||+|||++|++++...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ai~~i-~~~~~~ll~~~TGsGKT~~~l~~i~~~-------- 132 (472)
T 2fwr_A 62 RDIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERW-LVDKRGCIVLPTGSGKTHVAMAAINEL-------- 132 (472)
T ss_dssp HHHHHHHHHTTCCEEEESCCCCCCCCCCCCCCBCHHHHHHHHHH-TTTTEEEEECCTTSCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHcCCCcccccccccCcccccCCCCcCHHHHHHHHHH-HhcCCEEEEeCCCCCHHHHHHHHHHHc--------
Confidence 4567777766653 5899999999998 888899999999999999999987642
Q ss_pred HHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCce-eEEEeCCCcchHHHHHhcCCCcccccc---
Q 042526 105 AKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLT-LAMAAGSPLLTSEHSNRRKPNKRKRTR--- 180 (284)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~q~~~l~~~~~i~v~~~--- 180 (284)
+.++||||||++|+.|++..+..| ++. +.+++|+... ..++++.+.
T Consensus 133 ------------------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------~~~Ivv~T~~~l 182 (472)
T 2fwr_A 133 ------------------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------LKPLTVSTYDSA 182 (472)
T ss_dssp ------------------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------CCSEEEEEHHHH
T ss_pred ------------------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC--------cCCEEEEEcHHH
Confidence 346999999999999999999884 677 7787776533 345555442
Q ss_pred --cCCc-cccccccCCCCCCcccccccc
Q 042526 181 --KGGE-DEKLDSLKWNPLSQPKTTTLL 205 (284)
Q Consensus 181 --~~~~-~d~l~~lv~dEAd~m~~~gfl 205 (284)
.... .+++..+++|||..+.+.+|-
T Consensus 183 ~~~~~~~~~~~~liIvDEaH~~~~~~~~ 210 (472)
T 2fwr_A 183 YVNAEKLGNRFMLLIFDEVHHLPAESYV 210 (472)
T ss_dssp HHTHHHHTTTCSEEEEETGGGTTSTTTH
T ss_pred HHHHHHhcCCCCEEEEECCcCCCChHHH
Confidence 1111 145788999999998776653
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.44 E-value=1.2e-13 Score=140.86 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=100.9
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHh
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLE 109 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~ 109 (284)
+.++.+|.++++++.+++.|...+ ..|+++|+.+|+.++..|.+++++||||||||+ ++|++. ....
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~-------- 134 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDE-------- 134 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHH--------
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhc--------
Confidence 456788999999999999999988 789999999999996778899999999999998 677772 2211
Q ss_pred hhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccc--------cc
Q 042526 110 EKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRT--------RK 181 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~--------~~ 181 (284)
.....+.+++|++|||+||.|++..+... +++.+...+|...... .......++++.+ ..
T Consensus 135 --------~~~~~g~~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~-~~~~~~~~I~v~T~G~l~r~l~~ 202 (773)
T 2xau_A 135 --------MPHLENTQVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFE-NKTSNKTILKYMTDGMLLREAME 202 (773)
T ss_dssp --------CGGGGTCEEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTE-EECCTTCSEEEEEHHHHHHHHHH
T ss_pred --------cccCCCceEEecCchHHHHHHHHHHHHHH---hCCchhheecceeccc-cccCCCCCEEEECHHHHHHHHhh
Confidence 00112568999999999999998765433 2332221122110000 0011233443322 11
Q ss_pred CCccccccccCCCCCCc-ccccc
Q 042526 182 GGEDEKLDSLKWNPLSQ-PKTTT 203 (284)
Q Consensus 182 ~~~~d~l~~lv~dEAd~-m~~~g 203 (284)
...+.++..+++|||+. +++..
T Consensus 203 ~~~l~~~~~lIlDEah~R~ld~d 225 (773)
T 2xau_A 203 DHDLSRYSCIILDEAHERTLATD 225 (773)
T ss_dssp STTCTTEEEEEECSGGGCCHHHH
T ss_pred CccccCCCEEEecCccccccchH
Confidence 23477889999999995 77744
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.42 E-value=4.4e-14 Score=135.84 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 53 GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
|+..+..+| |.++..|++++++||||||||++|++|+++.+.. .++++|||+||
T Consensus 6 g~~q~~~~~----~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------------------~~~~~lvl~Pt 59 (459)
T 2z83_A 6 GGQQMGRGS----PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------------------QRLRTAVLAPT 59 (459)
T ss_dssp -------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------------------TTCCEEEEECS
T ss_pred cHHHHHHHH----HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------------------CCCcEEEECch
Confidence 444444444 4444889999999999999999999999988754 25789999999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcc---ccc-------ccCCccccccccCCCCCCc----
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKR---KRT-------RKGGEDEKLDSLKWNPLSQ---- 198 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~---v~~-------~~~~~~d~l~~lv~dEAd~---- 198 (284)
|+||.|++..+.. +.+....+..... ..+... +.. .....+.++..+|+|||+.
T Consensus 60 r~La~Q~~~~l~g------~~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~ 127 (459)
T 2z83_A 60 RVVAAEMAEALRG------LPVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPA 127 (459)
T ss_dssp HHHHHHHHHHTTT------SCEEECC--------------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHH
T ss_pred HHHHHHHHHHhcC------ceEeEEecccccC------CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCch
Confidence 9999999999872 2222111111000 011111 110 1112467899999999999
Q ss_pred -ccccccccchh
Q 042526 199 -PKTTTLLPSSL 209 (284)
Q Consensus 199 -m~~~gflp~~~ 209 (284)
+..++|+....
T Consensus 128 ~~~~~~~~~~~~ 139 (459)
T 2z83_A 128 SIAARGYIATKV 139 (459)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 77788776553
No 69
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.40 E-value=1.3e-12 Score=114.90 Aligned_cols=110 Identities=15% Similarity=-0.017 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+++|..++..+ +.+++++++++||+|||++++.++... +.++||++||++|
T Consensus 93 ~l~~~Q~~ai~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~~L 145 (237)
T 2fz4_A 93 SLRDYQEKALERW-LVDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (237)
T ss_dssp CCCHHHHHHHHHH-TTTSEEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHH-HhCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCHHH
Confidence 6899999999998 888899999999999999998776431 3469999999999
Q ss_pred HHHHHHHHhhhhcCCCce-eEEEeCCCcchHHHHHhcCCCcccccccC------CccccccccCCCCCCccccccc
Q 042526 136 ALQVLMVASPSLKSNSLT-LAMAAGSPLLTSEHSNRRKPNKRKRTRKG------GEDEKLDSLKWNPLSQPKTTTL 204 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~q~~~l~~~~~i~v~~~~~------~~~d~l~~lv~dEAd~m~~~gf 204 (284)
+.|++..+..| ++. +..+.|+... ..++++.+.-. ...+++..+++|||..+.+.+|
T Consensus 146 ~~q~~~~~~~~----~~~~v~~~~g~~~~--------~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~ 209 (237)
T 2fz4_A 146 AEQWKERLGIF----GEEYVGEFSGRIKE--------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESY 209 (237)
T ss_dssp HHHHHHHHGGG----CGGGEEEESSSCBC--------CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTH
T ss_pred HHHHHHHHHhC----CCCeEEEEeCCCCC--------cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHH
Confidence 99999999884 566 7777776532 33444433100 0113577899999999876554
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.38 E-value=3.1e-14 Score=136.19 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=72.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
+.|+|++++||||||||++|++|+++.+.. .++++|||+|||+||.|++..+..+.
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------------------~~~~~lil~Ptr~La~Q~~~~l~~~~-- 61 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR----------------------RRLRTLVLAPTRVVLSEMKEAFHGLD-- 61 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH----------------------TTCCEEEEESSHHHHHHHHHHTTTSC--
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------------------cCCeEEEEcchHHHHHHHHHHHhcCC--
Confidence 789999999999999999999999987754 25789999999999999999987542
Q ss_pred CCceeEEEeCCCcchHHHHHhcCCCccc----------ccccCCccccccccCCCCCCcc-----cccccccch
Q 042526 150 NSLTLAMAAGSPLLTSEHSNRRKPNKRK----------RTRKGGEDEKLDSLKWNPLSQP-----KTTTLLPSS 208 (284)
Q Consensus 150 ~~i~v~~~~G~~~~~q~~~l~~~~~i~v----------~~~~~~~~d~l~~lv~dEAd~m-----~~~gflp~~ 208 (284)
+...++. .. ....|..++ .......+.++..+|+|||++| ..++|+...
T Consensus 62 ----v~~~~~~-~~-----~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~ 125 (440)
T 1yks_A 62 ----VKFHTQA-FS-----AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHR 125 (440)
T ss_dssp ----EEEESSC-CC-----CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHH
T ss_pred ----eEEeccc-ce-----eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHH
Confidence 2211111 00 001111111 0011123678899999999999 555555443
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.31 E-value=9.2e-13 Score=132.37 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC
Q 042526 42 HPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPK 121 (284)
Q Consensus 42 ~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (284)
....++++.++++ |. |.+..... +.|++++++||||||||+ ++++.+...
T Consensus 130 ~~d~l~~i~dl~~--p~--~~~p~ar~-l~rk~vlv~apTGSGKT~----~al~~l~~~--------------------- 179 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PP--NWYPDARA-MQRKIIFHSGPTNSGKTY----HAIQKYFSA--------------------- 179 (677)
T ss_dssp CHHHHHHHTBCCC--GG--GGCHHHHT-SCCEEEEEECCTTSSHHH----HHHHHHHHS---------------------
T ss_pred CHHHHHHHhhccC--hh--hhCHHHHh-cCCCEEEEEcCCCCCHHH----HHHHHHHhc---------------------
Confidence 3444555544433 33 33333444 789999999999999997 555554432
Q ss_pred CCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCcccccc-cCCccccccccCCCCCCccc
Q 042526 122 GHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTR-KGGEDEKLDSLKWNPLSQPK 200 (284)
Q Consensus 122 ~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~-~~~~~d~l~~lv~dEAd~m~ 200 (284)
..++|++|||+||.|++..+..+ ++.+.+++|+....- ..-.+..++++.+. ..+....+..+|+|||++|.
T Consensus 180 --~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv-~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~ 252 (677)
T 3rc3_A 180 --KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV-QPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIR 252 (677)
T ss_dssp --SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-STTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGG
T ss_pred --CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-cCCCcccceeEecHhHhhhcccCCEEEEecceecC
Confidence 23599999999999999998875 677888888754410 00001123333332 34445677999999999999
Q ss_pred ccccccchhhhcccC
Q 042526 201 TTTLLPSSLALMNLT 215 (284)
Q Consensus 201 ~~gflp~~~~~~~~~ 215 (284)
+.+|......++...
T Consensus 253 d~~~g~~~~~~l~~l 267 (677)
T 3rc3_A 253 DPARGWAWTRALLGL 267 (677)
T ss_dssp CTTTHHHHHHHHHHC
T ss_pred CccchHHHHHHHHcc
Confidence 988877665554444
No 72
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.30 E-value=4.8e-12 Score=126.10 Aligned_cols=83 Identities=23% Similarity=0.112 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.|.|.|.+.+..+ +..|+++++.||||||||+||++|++..+... +.+++|++||
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~T 60 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVRT 60 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECCC
Confidence 4889998887543 27899999999999999999999999987542 4689999999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
++|+.|+.+.+..+....++++++++|+
T Consensus 61 ~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 61 NSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 9999999999999988778888777775
No 73
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.27 E-value=2.4e-12 Score=122.68 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=64.6
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCC
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSN 150 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~ 150 (284)
.|+|++++||||||||++|++|+++.+.. .++++|||+|||+||.|++..+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----------------------~g~~~lvl~Pt~~La~Q~~~~~~------ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----------------------KRLRTVILAPTRVVASEMYEALR------ 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----------------------TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----------------------CCCCEEEECcHHHHHHHHHHHhC------
Confidence 37899999999999999999999977654 25789999999999999998876
Q ss_pred CceeEEEeCCCcchHHHHHhcCCCcc-ccc--------ccCCccccccccCCCCCCcc
Q 042526 151 SLTLAMAAGSPLLTSEHSNRRKPNKR-KRT--------RKGGEDEKLDSLKWNPLSQP 199 (284)
Q Consensus 151 ~i~v~~~~G~~~~~q~~~l~~~~~i~-v~~--------~~~~~~d~l~~lv~dEAd~m 199 (284)
++.+.+++|.... ......++ +.+ .....+.++..+|+|||+++
T Consensus 53 ~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 53 GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp TSCEEEC--------------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC
T ss_pred CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC
Confidence 4455554443111 00000111 000 01123678899999999997
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.17 E-value=3.7e-11 Score=117.70 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred cCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEE
Q 042526 52 LGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI 128 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLI 128 (284)
+|| .|+|+|.+++..+ +..|+++++.||||||||++|++|++.. +.++||
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~~ 56 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVLI 56 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEEE
Confidence 578 7999999987543 2689999999999999999999998641 357999
Q ss_pred EecCHHHHHHHHHHHhhhhcCCCceeEEEeCC
Q 042526 129 INPTRELALQVLMVASPSLKSNSLTLAMAAGS 160 (284)
Q Consensus 129 L~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~ 160 (284)
++||++|+.|+...+..+ +++++++.|.
T Consensus 57 ~~~t~~l~~q~~~~~~~l----~~~~~~l~gr 84 (540)
T 2vl7_A 57 FTRTHSQLDSIYKNAKLL----GLKTGFLIGK 84 (540)
T ss_dssp EESCHHHHHHHHHHHGGG----TCCEEEC---
T ss_pred EcCCHHHHHHHHHHHHhc----CCcEEEecCC
Confidence 999999999999988875 4555555443
No 75
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.11 E-value=3.8e-11 Score=125.61 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=93.0
Q ss_pred CHHHHHHHHHcC-------CCCCcHHHHHHHHHHHc-------------CCCcEEEEccCCCCchHHhHHHHHHHHHHHH
Q 042526 42 HPLLMKSIYKLG-------FKESTSILKARIPALAH-------------QRKDVIGAAETESGKTRAFGLPALQRLLEER 101 (284)
Q Consensus 42 ~~~Ll~~L~~~g-------~~~pT~iQ~~aip~il~-------------~G~dviv~A~TGSGKTlafllPil~~l~~~~ 101 (284)
++.++..|..+- ...|+|+|..|++.++. .+++.+++++||||||+++ ++++..+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-- 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-- 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--
Confidence 455666676642 23599999999999832 1478999999999999997 677643321
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHh-cCCCcccccc
Q 042526 102 EKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNR-RKPNKRKRTR 180 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~-~~~~i~v~~~ 180 (284)
.....++|||||+++|+.|+...+..++... +.+|.+...+...+. ..+++++.+.
T Consensus 327 ------------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~-----v~~~~s~~~l~~~L~~~~~~IiVtTi 383 (1038)
T 2w00_A 327 ------------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS-----VNGSENTAGLKRNLDKDDNKIIVTTI 383 (1038)
T ss_dssp ------------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTTC-----SSSSCCCHHHHHHHHCSSCCEEEEEH
T ss_pred ------------------cCCCceEEEEeCcHHHHHHHHHHHHHhcccc-----cccccCHHHHHHHhcCCCCCEEEEEH
Confidence 1134689999999999999999999886531 122334444445554 3466655441
Q ss_pred --------c---CCccccccccCCCCCCccccccc
Q 042526 181 --------K---GGEDEKLDSLKWNPLSQPKTTTL 204 (284)
Q Consensus 181 --------~---~~~~d~l~~lv~dEAd~m~~~gf 204 (284)
. ...++....+++|||+++...++
T Consensus 384 qkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 384 QKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH
T ss_pred HHHHHHHhcccchhccccccEEEEEccchhcchHH
Confidence 0 11345667899999999775443
No 76
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.10 E-value=2.5e-11 Score=119.55 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHc----CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALAH----QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il~----~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+|+|..||+.++. ..++++++++||||||+++ ++++.++..... .........++|||+|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~-------------~~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARW-------------NRTGDYRKPRILFLAD 243 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTC-------------CSSCSSSCCCEEEEEC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhccc-------------ccccccCCCeEEEEeC
Confidence 699999999998832 2467999999999999995 455555544210 0001124678999999
Q ss_pred CHHHHHHHH-HHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccccc-------------CCccccccccCCCCCC
Q 042526 132 TRELALQVL-MVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRK-------------GGEDEKLDSLKWNPLS 197 (284)
Q Consensus 132 TReLa~Qi~-~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~-------------~~~~d~l~~lv~dEAd 197 (284)
|++|+.|++ +.++.+.. .+..+.++. .....++++.+.- ....+.+..+|+|||+
T Consensus 244 ~~~L~~Q~~~~~~~~~~~----~~~~~~~~~-------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH 312 (590)
T 3h1t_A 244 RNVLVDDPKDKTFTPFGD----ARHKIEGGK-------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH 312 (590)
T ss_dssp -----------CCTTTCS----SEEECCC---------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC
T ss_pred CHHHHHHHHHHHHHhcch----hhhhhhccC-------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc
Confidence 999999999 77776543 233333321 1223444443310 1123456779999999
Q ss_pred ccccc
Q 042526 198 QPKTT 202 (284)
Q Consensus 198 ~m~~~ 202 (284)
++...
T Consensus 313 ~~~~~ 317 (590)
T 3h1t_A 313 RGSAR 317 (590)
T ss_dssp -----
T ss_pred ccccc
Confidence 98754
No 77
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.76 E-value=2.7e-09 Score=105.95 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHcCCCcEEEEccCCCCch--HHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 58 TSILKARIPALAHQRKDVIGAAETESGKT--RAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 58 T~iQ~~aip~il~~G~dviv~A~TGSGKT--lafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
++.|..|++.+ +.++++++++++||||| ++++++.+..+.. ..+.++++++||+++
T Consensus 151 ~~~Q~~Ai~~~-l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------------------~~~~~vll~APTg~A 208 (608)
T 1w36_D 151 INWQKVAAAVA-LTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------------------GERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHH-HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------------------SCCCCEEEEBSSHHH
T ss_pred CHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------------------cCCCeEEEEeCChhH
Confidence 78999999998 88999999999999999 7788887764311 135689999999999
Q ss_pred HHHHHHHHhhhhcCCCc
Q 042526 136 ALQVLMVASPSLKSNSL 152 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~~i 152 (284)
|.++...+..++..+++
T Consensus 209 A~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 209 AARLTESLGKALRQLPL 225 (608)
T ss_dssp HHHHHHHHTHHHHHSSC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999988876655443
No 78
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.70 E-value=1.2e-08 Score=97.90 Aligned_cols=121 Identities=11% Similarity=-0.050 Sum_probs=81.0
Q ss_pred CCCcHHHHHHHHHHH---cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 55 KESTSILKARIPALA---HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 55 ~~pT~iQ~~aip~il---~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
..|+|+|.++++.++ ..|+++|++++||+|||+.++ +++..+... .....+|||||
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~--------------------~~~~~~LIv~P 94 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE--------------------NELTPSLVICP 94 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT--------------------TCCSSEEEEEC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc--------------------CCCCCEEEEcc
Confidence 369999999997652 458899999999999999964 444444321 12346999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcCCCccccccc--CC----ccccccccCCCCCCcccccc
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRKPNKRKRTRK--GG----EDEKLDSLKWNPLSQPKTTT 203 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~~~i~v~~~~--~~----~~d~l~~lv~dEAd~m~~~g 203 (284)
+ .|+.|+.++++++.. ++.+.++.|+... ......++++.+.- .. .......+|+|||.++.+.+
T Consensus 95 ~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~----~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~ 165 (500)
T 1z63_A 95 L-SVLKNWEEELSKFAP--HLRFAVFHEDRSK----IKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ 165 (500)
T ss_dssp S-TTHHHHHHHHHHHCT--TSCEEECSSSTTS----CCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT
T ss_pred H-HHHHHHHHHHHHHCC--CceEEEEecCchh----ccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh
Confidence 5 589999999998865 4566667666532 11233455544311 01 11245679999999976544
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.57 E-value=1.2e-07 Score=95.35 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=71.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 52 LGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 52 ~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
+|. +|+++|....-.+ ..|+ |+.-.||+|||+++.+|++-..+. +..+.|++|
T Consensus 72 lg~-r~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------------------G~~vhVvT~ 124 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNALI-----------------------GKGVHLVTV 124 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------------------SSCEEEEES
T ss_pred hCC-CCcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHhc-----------------------CCceEEEec
Confidence 676 4999999999887 8887 889999999999999999754332 556999999
Q ss_pred CHHHHHHHHHHHhhhhcCCCceeEEEeC
Q 042526 132 TRELALQVLMVASPSLKSNSLTLAMAAG 159 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~~~~i~v~~~~G 159 (284)
|+.||.|-+..+..+...+|++|++++.
T Consensus 125 ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 125 NDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred cHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 9999999999999999999999999887
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.41 E-value=7.1e-07 Score=89.03 Aligned_cols=128 Identities=11% Similarity=-0.042 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHH--------cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEE
Q 042526 56 ESTSILKARIPALA--------HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRAL 127 (284)
Q Consensus 56 ~pT~iQ~~aip~il--------~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 127 (284)
.+.|+|..++..++ ..++..|+..++|+|||+..+..+...+... .........+|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~L 118 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKVI 118 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcEE
Confidence 58899999998762 3467899999999999988766554432211 11111233589
Q ss_pred EEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHH---hc------CCCcccccc-------cCCcccccccc
Q 042526 128 IINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSN---RR------KPNKRKRTR-------KGGEDEKLDSL 191 (284)
Q Consensus 128 IL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l---~~------~~~i~v~~~-------~~~~~d~l~~l 191 (284)
||||+ .|+.|+..++.++... .+.+..++|+........+ .. ..++++.+- ..........+
T Consensus 119 iV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~v 196 (644)
T 1z3i_X 119 VVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLV 196 (644)
T ss_dssp EEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEE
T ss_pred EEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEE
Confidence 99997 8999999999998765 4555566665433222221 11 234444331 11112345679
Q ss_pred CCCCCCcccc
Q 042526 192 KWNPLSQPKT 201 (284)
Q Consensus 192 v~dEAd~m~~ 201 (284)
|+|||-++.+
T Consensus 197 I~DEaH~ikn 206 (644)
T 1z3i_X 197 ICDEGHRLKN 206 (644)
T ss_dssp EETTGGGCCT
T ss_pred EEECceecCC
Confidence 9999998754
No 81
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.40 E-value=1.4e-07 Score=98.37 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=79.4
Q ss_pred CCCcHHHHHHHHHHHcC-CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 55 KESTSILKARIPALAHQ-RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~-G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
..|+|+|..++..++.. +.++|++.+||+|||+.++..+...+... ...++|||||+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---------------------~~~rvLIVvP~- 209 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---------------------AAERVLIIVPE- 209 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---------------------SCCCEEEECCT-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---------------------CCCeEEEEeCH-
Confidence 36899999999887322 55899999999999999877665443221 22369999999
Q ss_pred HHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHH---hcCCCccccccc-----C-----CccccccccCCCCCCccc
Q 042526 134 ELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSN---RRKPNKRKRTRK-----G-----GEDEKLDSLKWNPLSQPK 200 (284)
Q Consensus 134 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l---~~~~~i~v~~~~-----~-----~~~d~l~~lv~dEAd~m~ 200 (284)
.|+.|+...+.... ++.+.++.|.......... ....++++.+.- . .....+..+|+|||-++.
T Consensus 210 sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 210 TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLV 286 (968)
T ss_dssp TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCC
T ss_pred HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhc
Confidence 99999999886543 5666666554322211111 112344443310 0 112246679999999976
Q ss_pred ccc
Q 042526 201 TTT 203 (284)
Q Consensus 201 ~~g 203 (284)
..+
T Consensus 287 n~~ 289 (968)
T 3dmq_A 287 WSE 289 (968)
T ss_dssp CBT
T ss_pred CCC
Confidence 543
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3e-06 Score=86.48 Aligned_cols=123 Identities=16% Similarity=-0.022 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHH---cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecC
Q 042526 56 ESTSILKARIPALA---HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPT 132 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PT 132 (284)
.+.|+|..++..++ ..|++.|++.++|+|||+..+..+...+.... ..-.+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--------------------~~~~~LIV~P- 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--------------------QNGPHIIVVP- 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--------------------CCSCEEEECC-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--------------------CCCCEEEEEC-
Confidence 57789999997551 47899999999999999887655443332221 1224799999
Q ss_pred HHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH-H------------hcCCCcccccccCC--c-----cccccccC
Q 042526 133 RELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS-N------------RRKPNKRKRTRKGG--E-----DEKLDSLK 192 (284)
Q Consensus 133 ReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~-l------------~~~~~i~v~~~~~~--~-----~d~l~~lv 192 (284)
..|+.|....+.+++. ++.+.+++|......... . ....++++.+--.. . .-....+|
T Consensus 295 ~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vI 372 (800)
T 3mwy_W 295 LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMA 372 (800)
T ss_dssp TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEE
T ss_pred chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceee
Confidence 7788999999988864 566777777654332211 1 11234444331100 0 11356699
Q ss_pred CCCCCcccc
Q 042526 193 WNPLSQPKT 201 (284)
Q Consensus 193 ~dEAd~m~~ 201 (284)
+|||.++.+
T Consensus 373 vDEaH~lkn 381 (800)
T 3mwy_W 373 VDEAHRLKN 381 (800)
T ss_dssp ETTGGGGCC
T ss_pred hhhhhhhcC
Confidence 999998744
No 83
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0022 Score=65.49 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..+++-|..|+-.+ +.+.-++++||+|||||.+. .-++..+... .+.++||++||..
T Consensus 359 ~~Ln~~Q~~Av~~~-l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~---------------------~~~~ILv~a~tn~ 415 (802)
T 2xzl_A 359 AQLNSSQSNAVSHV-LQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI---------------------HKDRILVCAPSNV 415 (802)
T ss_dssp CCCCHHHHHHHHHH-TTCSEEEEECSTTSSHHHHH-HHHHHHHHHH---------------------HCCCEEEEESSHH
T ss_pred ccCCHHHHHHHHHH-hcCCCEEEECCCCCCHHHHH-HHHHHHHHhC---------------------CCCeEEEEcCcHH
Confidence 35679999999988 77777899999999999654 3344444332 1357999999999
Q ss_pred HHHHHHHHHhhh
Q 042526 135 LALQVLMVASPS 146 (284)
Q Consensus 135 La~Qi~~~~~~l 146 (284)
-|.++...+..+
T Consensus 416 A~d~l~~rL~~~ 427 (802)
T 2xzl_A 416 AVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999998887754
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.99 E-value=0.0018 Score=64.32 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHHHcCCCc-EEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 56 ESTSILKARIPALAHQRKD-VIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~d-viv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
.+.+-|.+|+-.+ +..++ .+|++|+|||||.+.+ -+|..+.. .+.++||++||..
T Consensus 189 ~LN~~Q~~AV~~a-l~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~----------------------~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 189 CLDTSQKEAVLFA-LSQKELAIIHGPPGTGKTTTVV-EIILQAVK----------------------QGLKVLCCAPSNI 244 (646)
T ss_dssp TCCHHHHHHHHHH-HHCSSEEEEECCTTSCHHHHHH-HHHHHHHH----------------------TTCCEEEEESSHH
T ss_pred CCCHHHHHHHHHH-hcCCCceEEECCCCCCHHHHHH-HHHHHHHh----------------------CCCeEEEEcCchH
Confidence 4578999999988 55554 6899999999997643 33333332 2457999999999
Q ss_pred HHHHHHHHHhh
Q 042526 135 LALQVLMVASP 145 (284)
Q Consensus 135 La~Qi~~~~~~ 145 (284)
-|.++...+..
T Consensus 245 AvD~i~erL~~ 255 (646)
T 4b3f_X 245 AVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888777654
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.98 E-value=0.0016 Score=64.47 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..+++-|..|+-.+ +.+.-++++||+|||||.+.. .++..+... .+.++||++||..
T Consensus 179 ~~ln~~Q~~av~~~-l~~~~~li~GppGTGKT~~~~-~~i~~l~~~---------------------~~~~ilv~a~tn~ 235 (624)
T 2gk6_A 179 PDLNHSQVYAVKTV-LQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------------------GNGPVLVCAPSNI 235 (624)
T ss_dssp CCCCHHHHHHHHHH-HTCSEEEEECCTTSCHHHHHH-HHHHHHHTS---------------------SSCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHH-hcCCCeEEECCCCCCHHHHHH-HHHHHHHHc---------------------CCCeEEEEeCcHH
Confidence 35689999999988 677788999999999996543 333333221 2457999999999
Q ss_pred HHHHHHHHHhhh
Q 042526 135 LALQVLMVASPS 146 (284)
Q Consensus 135 La~Qi~~~~~~l 146 (284)
.|.++...+...
T Consensus 236 A~~~l~~~l~~~ 247 (624)
T 2gk6_A 236 AVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
No 86
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.90 E-value=0.00073 Score=67.57 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCCCCcHHHHHHHHHHH---cCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEE
Q 042526 53 GFKESTSILKARIPALA---HQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALI 128 (284)
Q Consensus 53 g~~~pT~iQ~~aip~il---~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLI 128 (284)
+| .|++.|..+|..++ ..|. ..++.+.||||||+++.- ++..+ .. .+||
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~------------------------~~-~~lv 58 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL------------------------GR-PALV 58 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------------------TC-CEEE
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh------------------------CC-CEEE
Confidence 56 79999999988662 3343 567889999999976642 22211 12 2899
Q ss_pred EecCHHHHHHHHHHHhhhhc
Q 042526 129 INPTRELALQVLMVASPSLK 148 (284)
Q Consensus 129 L~PTReLa~Qi~~~~~~l~~ 148 (284)
|+|+..+|.|+++.++.|..
T Consensus 59 v~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 59 LAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EESSHHHHHHHHHHHHHHCT
T ss_pred EecCHHHHHHHHHHHHHHCC
Confidence 99999999999999999964
No 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0031 Score=59.94 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHcCCCCCcHHHHHHHHHHHcC----CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeE
Q 042526 50 YKLGFKESTSILKARIPALAHQ----RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLR 125 (284)
Q Consensus 50 ~~~g~~~pT~iQ~~aip~il~~----G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (284)
.-+.|..+++-|..|+-.++.. ...+++.|+.|||||. .+..++..+... ....
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~---------------------~~~~ 76 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALIST---------------------GETG 76 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHT---------------------TCCC
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhc---------------------CCce
Confidence 3467889999999999876222 2399999999999994 333444444332 1136
Q ss_pred EEEEecCHHHHHHHHHHH
Q 042526 126 ALIINPTRELALQVLMVA 143 (284)
Q Consensus 126 aLIL~PTReLa~Qi~~~~ 143 (284)
+++++||...|..+...+
T Consensus 77 il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 77 IILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHhhh
Confidence 899999998887766544
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.75 E-value=0.0033 Score=64.19 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+++-|..|+-.+ +.+.-++++||+|||||.+. .-++..+... .+.++|+++||..-
T Consensus 356 ~Ln~~Q~~Av~~~-l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~---------------------~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 356 DLNHSQVYAVKTV-LQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------------------GNGPVLVCAPSNIA 412 (800)
T ss_dssp CCCHHHHHHHHHH-HTSSEEEEECCTTSCHHHHH-HHHHHHHHTT---------------------CSSCEEEEESSHHH
T ss_pred CCCHHHHHHHHHh-ccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc---------------------CCCcEEEEcCcHHH
Confidence 4688999999988 67777899999999999653 3333333221 24579999999999
Q ss_pred HHHHHHHHhhh
Q 042526 136 ALQVLMVASPS 146 (284)
Q Consensus 136 a~Qi~~~~~~l 146 (284)
|.++...+...
T Consensus 413 ~~~l~~~l~~~ 423 (800)
T 2wjy_A 413 VDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99988877653
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.71 E-value=0.0036 Score=61.57 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..+++-|.+|+-. ....++|.|+.|||||.+.+--+. ++... .....-+.|+|++|+.
T Consensus 8 ~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~------------------~~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIA-WLMSV------------------ENCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHH-HHHHT------------------SCCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHH-HHHHh------------------CCCChhhEEEEeccHH
Confidence 4689999999963 356899999999999965543332 23221 0112236999999999
Q ss_pred HHHHHHHHHhhhhc
Q 042526 135 LALQVLMVASPSLK 148 (284)
Q Consensus 135 La~Qi~~~~~~l~~ 148 (284)
.|.++...+..+..
T Consensus 66 aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 66 AAAEMRHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887754
No 90
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.52 E-value=0.0072 Score=59.36 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+++-|..|+..+ +.++.+++.+++|||||... ..++..+.. .+..+++++||...
T Consensus 189 ~L~~~Q~~Av~~~-~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 189 GLSEEQASVLDQL-AGHRLVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGKA 244 (574)
T ss_dssp TCCHHHHHHHHHH-TTCSEEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHH-HhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHHH
Confidence 4789999999998 78899999999999999542 233332222 24578999999999
Q ss_pred HHHHHHHH
Q 042526 136 ALQVLMVA 143 (284)
Q Consensus 136 a~Qi~~~~ 143 (284)
|..+...+
T Consensus 245 a~~L~e~~ 252 (574)
T 3e1s_A 245 ARRLGEVT 252 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHhHhhh
Confidence 98876543
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.39 E-value=0.0049 Score=61.30 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+|+-|.+|+-. .+..++|.|..|||||.+..-=+.. +.... ....-..|+|+.|+..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~-ll~~~------------------~~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAH-LIRGC------------------GYQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHH-HHHHH------------------CCCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHH-HHHhc------------------CCCHHHeEEEeccHHH
Confidence 478999999864 3678999999999999655433333 22221 0123468999999999
Q ss_pred HHHHHHHHhhhhc
Q 042526 136 ALQVLMVASPSLK 148 (284)
Q Consensus 136 a~Qi~~~~~~l~~ 148 (284)
|.++...+..+..
T Consensus 60 a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 60 AREMKERVGQTLG 72 (673)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC
Confidence 9999998887654
No 92
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.76 E-value=0.016 Score=58.23 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 55 KESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 55 ~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..++|-|.+|+-. .+..++|.|..|||||.+..--+.. +... .....-+.|+|+.|+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~-ll~~------------------~~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAY-LMAE------------------KHVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHH-HHHT------------------TCCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHH-HHHh------------------cCCCHHHeEEEeccHH
Confidence 4689999999864 3568999999999999665433332 2221 0112236899999999
Q ss_pred HHHHHHHHHhhhhc
Q 042526 135 LALQVLMVASPSLK 148 (284)
Q Consensus 135 La~Qi~~~~~~l~~ 148 (284)
.|..+...+..+..
T Consensus 68 AA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 68 AAREMRERVQSLLG 81 (724)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 99998888776643
No 93
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.74 E-value=0.016 Score=61.74 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.+|+-|..+|- ..+.+++|.|..|||||.+.+--++..+... ......-+.|+|++|+..
T Consensus 10 ~~t~eQ~~~i~---~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~-----------------~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 10 TWTDDQWNAIV---STGQDILVAAAAGSGKTAVLVERMIRKITAE-----------------ENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp CCCHHHHHHHH---CCSSCEEEEECTTCCHHHHHHHHHHHHHSCS-----------------SSCCCGGGEEEECSSHHH
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----------------CCCCCccceEEEeccHHH
Confidence 57999999995 4588999999999999966554444333221 011123368999999999
Q ss_pred HHHHHHHHhh
Q 042526 136 ALQVLMVASP 145 (284)
Q Consensus 136 a~Qi~~~~~~ 145 (284)
|..+...+..
T Consensus 70 a~e~~~ri~~ 79 (1232)
T 3u4q_A 70 AAEMKHRIAE 79 (1232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887766
No 94
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.59 E-value=0.094 Score=51.43 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.|+|.|...+-.+ ...+-+++..+.|+|||.+...-++-.+... .+..++++.||++.
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------------------~~~~i~~va~t~~q 220 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------------------KDKAVGILAHKGSM 220 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------------------SSCEEEEEESSHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHhC---------------------CCCeEEEEECCHHH
Confidence 4799999998876 5678899999999999987665444333221 35579999999999
Q ss_pred HHHHHHHHhhhhcCC
Q 042526 136 ALQVLMVASPSLKSN 150 (284)
Q Consensus 136 a~Qi~~~~~~l~~~~ 150 (284)
|..+...++.+....
T Consensus 221 A~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 221 SAEVLDRTKQAIELL 235 (592)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999988888776544
No 95
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.44 E-value=0.042 Score=54.76 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHH---cCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEec
Q 042526 56 ESTSILKARIPALA---HQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINP 131 (284)
Q Consensus 56 ~pT~iQ~~aip~il---~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~P 131 (284)
.|+.-|..+|..++ ..|. ..++.+-||||||++..- ++..+ .. ..|||+|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~------------------------~~-~~lvv~~ 65 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV------------------------NK-PTLVIAH 65 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------------------CC-CEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh------------------------CC-CEEEEEC
Confidence 58888888887552 3343 467889999999965532 22111 12 2899999
Q ss_pred CHHHHHHHHHHHhhhhc
Q 042526 132 TRELALQVLMVASPSLK 148 (284)
Q Consensus 132 TReLa~Qi~~~~~~l~~ 148 (284)
+..+|.|++..++.|..
T Consensus 66 ~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 66 NKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999964
No 96
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.11 E-value=0.12 Score=48.10 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.++|.|...+-.+ ...+-+++..+-+.|||.+.+.-++-.+.. ..+..+++++||++.
T Consensus 163 ~L~p~Qk~il~~l-~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (385)
T ss_dssp CCCHHHHHHHHHH-HHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHHH
T ss_pred CCCHHHHHHHHhh-ccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHH
Confidence 6899999998876 455778999999999998766544432221 135679999999999
Q ss_pred HHHHHHHHhhhhc
Q 042526 136 ALQVLMVASPSLK 148 (284)
Q Consensus 136 a~Qi~~~~~~l~~ 148 (284)
|..+...+..+..
T Consensus 221 A~~vf~~i~~mi~ 233 (385)
T 2o0j_A 221 SAEVLDRTKQAIE 233 (385)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988887777654
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.06 E-value=0.2 Score=40.60 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|+.+++.+|+|+|||..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GGCCEEEECCSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999999943
No 98
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.046 Score=51.85 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred CccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 30 STEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
..|-.+|++++-.+...+.|.+. -+.+|--++..-++ .-+.+++.+|+|||||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHH
Confidence 35667899998778888777653 23344444443332 357899999999999954
No 99
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.19 E-value=0.13 Score=45.60 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=33.3
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|.+++-...+.+.|.+.- ..|..........-+..++.+++.+|+|||||+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 34567999977777777776531 0010000000110114578899999999999954
No 100
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.58 E-value=0.29 Score=38.38 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+.+|++.+++|||||+.
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 6678999999999999953
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.20 E-value=0.18 Score=43.83 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=33.1
Q ss_pred cccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLG---FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g---~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
|-.+|.++.-.+..++.|..+= +..|-.++. + .+ ..++.+++.+|+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~--~-~~-~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEK--V-GI-EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHH--H-CC-CCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHh--c-CC-CCCCeEEEECCCCCcHHHH
Confidence 4467999977777777776531 111111111 1 12 4577899999999999953
No 102
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.73 E-value=0.33 Score=45.24 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=32.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELAL 137 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~ 137 (284)
....++++.|+||||||.+ +-+++..+.. .+..++|+=|..|+..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~-~~~li~~~~~----------------------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVL-LRELAYTGLL----------------------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHH-HHHHHHHHHH----------------------TTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHH-HHHHHHHHHH----------------------CCCcEEEEeCCCchhH
Confidence 3467999999999999976 3445544433 2456888889988864
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.55 E-value=0.22 Score=47.35 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=32.3
Q ss_pred CcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 73 KDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 73 ~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
+=.++.|+.|||||..+. -++ . .-..+||+||++++..+.+.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~-~~~----~-----------------------~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL-SRV----N-----------------------FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHHH-HHC----C-----------------------TTTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHH-HHh----c-----------------------cCCeEEEeCCHHHHHHHHHHhhh
Confidence 345789999999996542 111 0 01359999999999999888864
No 104
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.54 E-value=0.13 Score=48.25 Aligned_cols=54 Identities=20% Similarity=0.109 Sum_probs=35.0
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|++++=-....+.|.+. -+.+|--++..-+ ..-+.+++.+|+|||||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi----~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI----AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCceEEeCCCCCCHHHH
Confidence 3457899997556666666653 1233333333322 2357899999999999954
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.47 E-value=0.73 Score=42.29 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+|||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566899999999999943
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.42 E-value=0.35 Score=37.90 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=17.2
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..+.+|++.+++|||||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 56889999999999999543
No 107
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.27 E-value=0.12 Score=48.98 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=34.6
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|++++=-+...+.|.+. -+.+|--++..-+ ..-+.+++.+|+|||||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~----~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI----KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeEEEECCCCCcHHHH
Confidence 4557899997666666666552 1223333332222 2357899999999999954
No 108
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.52 E-value=0.65 Score=38.94 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|+|||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp ETTCEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 5688899999999999943
No 109
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.35 E-value=0.25 Score=47.16 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=35.7
Q ss_pred ccccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLG---FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g---~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|++++=-..+.+.|.+.= +.+|--++..-+ ..-+.|++.+|+|||||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi----~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI----DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC----CCCCceEeeCCCCCcHHHH
Confidence 34578999987777777777631 223332322222 3457999999999999954
No 110
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.17 E-value=0.39 Score=42.01 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=25.2
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
|..+.++++|++++ + |.. +. + ..|.-+++.+|||||||..
T Consensus 2 ~~~~~~l~~l~~~~-v---l~~-------------i~-i-~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 2 PAEIPEFKKLGLPD-K---VLE-------------LC-H-RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp ----CCGGGSSCCT-H---HHH-------------GG-G-CSSEEEEEECSTTCSHHHH
T ss_pred CCCCCChHHCCCHH-H---HHH-------------Hh-h-CCCCEEEEECCCCccHHHH
Confidence 55566778887762 1 211 11 3 6788899999999999954
No 111
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.08 E-value=0.62 Score=43.77 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+|||||||..
T Consensus 165 ~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSSEEEEEECSTTSCHHHH
T ss_pred hcCCeEEEECCCCCCHHHH
Confidence 3456789999999999943
No 112
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.62 E-value=0.62 Score=39.11 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil 94 (284)
..|.-+++.|++|+||| +|++-++
T Consensus 28 ~~G~l~~i~G~pG~GKT-~l~l~~~ 51 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKT-TFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHH-HHHHHHH
T ss_pred CCCeEEEEEeCCCCCHH-HHHHHHH
Confidence 45778999999999999 4444433
No 113
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.48 E-value=0.83 Score=40.96 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=32.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----cCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALA----HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il----~~G~dviv~A~TGSGKTla 88 (284)
|-.+|++++-...+.+.|.++=. .|+ ..|.++ ...+.+++.+|+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 44689999777777777765210 011 112220 2247899999999999954
No 114
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.09 E-value=0.28 Score=46.42 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=34.9
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|++++=-+...+.|.+. -+.+|--++..-++ .-+.+++.+|+|||||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHH
Confidence 4557899996445555555542 23344444443332 347899999999999954
No 115
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.01 E-value=0.38 Score=40.94 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=29.9
Q ss_pred cCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 34 DAWNELRLHPLLMKSIYKLG--FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.+|+++.-.+.+.+.|.++- +..|..+.... + ...+.+++.+|+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~-~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---A-KVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------C-CCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---C-CCCceEEEECCCCCCHHHH
Confidence 56888866666777765420 12222221111 1 3457899999999999954
No 116
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.21 E-value=0.85 Score=38.95 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=30.3
Q ss_pred ccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 33 FDAWNELRLHPLLMKSIYKLG--FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
-.+|+++.-.+.+.+.|..+- +..|..++...+ ...+.+++.+|+|||||..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG----KIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC----CCCCeEEEECcCCCCHHHH
Confidence 457999977777777765420 111111111111 2245799999999999944
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.67 E-value=0.26 Score=46.57 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=33.0
Q ss_pred ccccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKL---GFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~---g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|+++|=-..+.+.|.+. -+.+|--++..-+ ...+.+++.+|+|||||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~----~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI----DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCceEEEECCCCCCHHHH
Confidence 3446899997556666666542 1222222222221 3357899999999999954
No 118
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.55 E-value=0.79 Score=44.16 Aligned_cols=41 Identities=24% Similarity=0.142 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 46 MKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 46 l~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+..|.++|. +++.+..-+...+..|..+++.+|||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 444556663 23333344433337899999999999999944
No 119
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.15 E-value=1.4 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.110 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+.+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999954
No 120
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.13 E-value=0.3 Score=41.79 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=31.4
Q ss_pred ccccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHH-HcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLG--FKESTSILKARIPAL-AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~i-l~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|+++.-.+.....+...- |..+ .++..+ +.-.+.+++.+|+|+|||..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 34568999977777766665531 2111 122211 01134499999999999943
No 121
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.07 E-value=2 Score=37.86 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHHcCCC-----cEEEEccCCCCchHHhH
Q 042526 43 PLLMKSIYKLGFKESTSILKAR-IPALAHQRK-----DVIGAAETESGKTRAFG 90 (284)
Q Consensus 43 ~~Ll~~L~~~g~~~pT~iQ~~a-ip~il~~G~-----dviv~A~TGSGKTlafl 90 (284)
..+.+-|+-.||. |++... +-.+ +.|+ .+++.+|+|||||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~-l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGW-ATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHH-HTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHH-HhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788889888887 666443 3333 4443 59999999999996654
No 122
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.85 E-value=1.3 Score=39.33 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=33.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----cCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALA----HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il----~~G~dviv~A~TGSGKTla 88 (284)
|-.+|.++.-...+.+.|..+=. .| ...|.++ ...+.+++.+|+|+|||+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44679999878888888776411 11 1112221 2245799999999999954
No 123
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.52 E-value=1 Score=40.39 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=28.7
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.|..+|+++--.+....++..+ ...+-... ..++.+++.+|+|+|||..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l--------~~~~~~~~-~~~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVV--------LEMIREGK-IAGRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHH--------HHHHHTTC-CTTCEEEEEESTTSSHHHH
T ss_pred CcCcchhhccChHHHHHHHHHH--------HHHHHcCC-CCCCEEEEECCCCCCHHHH
Confidence 4445577775555555554321 11111111 3356899999999999954
No 124
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.28 E-value=0.26 Score=43.37 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=27.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH-HcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILK-ARIPAL-AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~-~aip~i-l~~G~dviv~A~TGSGKTla 88 (284)
|-.+|.+++-.+.+.+.|.+.=. .|+.. .++..+ +.-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 44689999877888887775311 11111 111111 01234499999999999954
No 125
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.09 E-value=1.5 Score=37.31 Aligned_cols=50 Identities=6% Similarity=0.130 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCC----CcEEEEccCCCCchHHhHHHHHHHH
Q 042526 44 LLMKSIYKLGFKESTSILKARIPALAHQR----KDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 44 ~Ll~~L~~~g~~~pT~iQ~~aip~il~~G----~dviv~A~TGSGKTlafllPil~~l 97 (284)
.|.+-|+=.|+. |..+ ..++..+ ..+ +.+++.+|+|||||.. +..++..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~-~~~iPkkn~ili~GPPGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSF-LKGTPKKNCLVFCGPANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHH-HHTCTTCSEEEEESCGGGCHHHH-HHHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHH-HhcCCcccEEEEECCCCCCHHHH-HHHHHHHh
Confidence 566666644543 3333 3344444 333 3599999999999943 34555443
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=82.93 E-value=1.1 Score=35.49 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.|..+++.+|+|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999994
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.04 E-value=1.8 Score=39.05 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+..+++.+|+|||||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999964
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.50 E-value=2.2 Score=36.96 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=32.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH----HHcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPA----LAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~----il~~G~dviv~A~TGSGKTla 88 (284)
+-.+|.++.=.....+.|..+=. .|. ..|. +...++.+++.+|+|+|||+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPS---VRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHH---HCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhh---hCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 44679998767777777765310 000 0011 112467999999999999954
No 129
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.89 E-value=0.46 Score=41.34 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=31.7
Q ss_pred cccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHH-HcCCCcEEEEccCCCCchHH
Q 042526 32 EFDAWNELRLHPLLMKSIYKLG--FKESTSILKARIPAL-AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~i-l~~G~dviv~A~TGSGKTla 88 (284)
+-.+|+++.-.+.+...+..+- |..+ .++..+ +.-.+.+++.+|+|||||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567999987777777776532 1111 122211 01133499999999999944
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.47 E-value=1.7 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.115 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|+|||.
T Consensus 21 ~~G~~~~i~G~~GsGKTt 38 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTI 38 (235)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEEcCCCCCHHH
Confidence 457889999999999994
No 131
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.32 E-value=3.3 Score=36.81 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=19.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..|.=+++.|++|+||| +|++-++.
T Consensus 66 ~~G~l~li~G~pG~GKT-tl~l~ia~ 90 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKT-AFALKQAK 90 (315)
T ss_dssp CTTCEEEEECCTTSSHH-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHH
Confidence 66888999999999999 45554443
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.28 E-value=0.75 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
++.+++.+++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999943
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=79.70 E-value=2.3 Score=34.85 Aligned_cols=20 Identities=25% Similarity=0.105 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.|+=+++.++.|+|||...+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHH
Confidence 35667889999999995543
No 134
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.19 E-value=4 Score=37.06 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=20.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|++|+||| +|++-++..+
T Consensus 44 ~~G~LiiIaG~pG~GKT-t~al~ia~~~ 70 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKT-SLMMNMVLSA 70 (338)
T ss_dssp CTTCEEEEEECTTSCHH-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHH
Confidence 56778899999999999 5555554433
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.12 E-value=0.9 Score=37.63 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.++.+++.+|+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 578999999999999943
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.54 E-value=2.6 Score=38.17 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
..+.+++.+|+|+|||+..
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999543
No 137
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.52 E-value=1.5 Score=37.56 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+..+++.+++|||||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 5678999999999999953
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.59 E-value=3.2 Score=38.88 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=20.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.-+++.|++|+||| +|++-++..+
T Consensus 201 ~~G~liiI~G~pG~GKT-tl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKT-AFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHH-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHH
Confidence 56788999999999999 5555554443
No 139
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.52 E-value=0.77 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
...+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 56899999999999943
No 140
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.45 E-value=2.5 Score=35.50 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 54 FKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 54 ~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+..-|.-|..++..+ ..|.-+.+.+|+|||||..
T Consensus 5 i~pk~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHH-HHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhc-cCCCEEEEECCCCCCHHHH
Confidence 333455567777777 8899999999999999954
No 141
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.43 E-value=2.3 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+..+++.+|+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 467899999999999944
No 142
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.40 E-value=0.98 Score=38.70 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 56799999999999954
No 143
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.01 E-value=2.5 Score=37.55 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.++++.+|+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 68999999999999943
No 144
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.96 E-value=2.8 Score=40.17 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 45 LMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 45 Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+...|.. .|---..+=..++-.+ ..|.++++.+|+|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al-~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAA-LSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHH-HHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHH-hcCCeeEeecCchHHHHHH
Confidence 3444443 3333333334445555 7789999999999999953
No 145
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.84 E-value=2.4 Score=38.74 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=29.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELA 136 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa 136 (284)
..+.++++.++||||||...- -++..+.. .+.+++|+=|.++..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~-~~~~~~~~----------------------~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAK-MLLLREYM----------------------QGSRVIIIDPEREYK 76 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHH-HHHHHHHT----------------------TTCCEEEEESSCCSH
T ss_pred cccCceEEEcCCCCCHHHHHH-HHHHHHHH----------------------CCCEEEEEeCCcCHH
Confidence 356789999999999995432 23322211 245678888887754
No 146
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.84 E-value=0.73 Score=43.36 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=32.7
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH----HcCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPAL----AHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~i----l~~G~dviv~A~TGSGKTla 88 (284)
.|-.+|++++-...+.+.|..+-. .|++. |.+ ....+.+++.+|+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~---~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHC---TTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhC---HHHhhccCCCCceEEEECCCCCCHHHH
Confidence 455689999767777777765311 01110 111 13357899999999999954
No 147
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.62 E-value=3.1 Score=39.13 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=20.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|++|+||| +|++-++..+
T Consensus 195 ~~G~liiIaG~pG~GKT-tlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKT-AFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHH-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChH-HHHHHHHHHH
Confidence 56778999999999999 5555555443
No 148
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.49 E-value=1.1 Score=39.25 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
+..+++.+|+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999543
No 149
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=76.47 E-value=2.4 Score=36.23 Aligned_cols=20 Identities=15% Similarity=-0.065 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.=+++.+++|+|||.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAEL 29 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHH
Confidence 44667788999999999554
No 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.40 E-value=2.4 Score=39.82 Aligned_cols=49 Identities=14% Similarity=-0.019 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
|-..|.++.-...+.+.+..+ + ..+.... ..++.+++.+|+|+|||+..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~-------~-~~~~~~~-~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVI-------V-ELIKSKK-MAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHH-------H-HHHHTTC-CTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccCHHHHHHHHHHH-------H-HHHHhCC-CCCCeEEEECCCcCCHHHHH
Confidence 445578876666666665431 0 1111112 34578999999999999543
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.37 E-value=0.7 Score=41.82 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.+.++++.+|+|||||++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999554
No 152
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.17 E-value=3.2 Score=38.81 Aligned_cols=27 Identities=37% Similarity=0.258 Sum_probs=20.4
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.=+++.|++|+||| +|++-++..+
T Consensus 198 ~~G~l~ii~G~pg~GKT-~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKT-AFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHH-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHH
Confidence 56778899999999999 5655555443
No 153
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=75.13 E-value=2.1 Score=40.96 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhhcC
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSLKS 149 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~~~ 149 (284)
..|..+.+.+-||||||++.. .+ .... .. ..|||+|+..+|.|++..++.|...
T Consensus 12 ~~~~~~~l~g~~gs~ka~~~a--~l---~~~~--------------------~~-p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 12 KAGEQRLLGELTGAACATLVA--EI---AERH--------------------AG-PVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp STTCEEEEECCCTTHHHHHHH--HH---HHHS--------------------SS-CEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCCeEEEeCCCchHHHHHHH--HH---HHHh--------------------CC-CEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 456778899999999995432 21 1210 12 3799999999999999999988653
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.55 E-value=1.4 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+|+|||||.
T Consensus 3 ~~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 467889999999999994
No 155
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.93 E-value=5.9 Score=36.08 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=30.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 33 FDAWNELRLHPLLMKSIYKLGFKESTSIL-KARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 33 ~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ-~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
-.+|.++.=...+++.|..+-.. +.. ...+..+....+.+++.+|+|+|||+.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 35688886666666666543100 000 000001112367999999999999954
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.77 E-value=3.8 Score=39.12 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=28.7
Q ss_pred CcccCCCCHHHHHHHHHc----------CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 35 AWNELRLHPLLMKSIYKL----------GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~----------g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+|.++.-.+..++.|... ||..+-. ... ...+.+++.+|+|+|||...
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~-~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGS-GVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TST-TSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCC-CCCcEEEEECCCCCCHHHHH
Confidence 688887677776666542 1111100 000 02368999999999999543
No 157
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.71 E-value=1.6 Score=37.03 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.7
Q ss_pred cCCCcEEEEccCCCCch
Q 042526 70 HQRKDVIGAAETESGKT 86 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKT 86 (284)
..|+-+++.+|||+|||
T Consensus 32 ~~g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKS 48 (205)
T ss_dssp ETTEEEEEECCCTTTTH
T ss_pred ECCEEEEEECCCCCCHH
Confidence 34778999999999997
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.69 E-value=4.7 Score=35.54 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=27.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+|.++--...+++.|..+ ++. +...- .....+++.+|+|+|||..
T Consensus 27 ~~~~iiG~~~~~~~l~~~-------l~~-~~~~~-~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVF-------IAA-AKKRN-ECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp SGGGCCSCHHHHHHHHHH-------HHH-HHHTT-SCCCCEEEECSTTSSHHHH
T ss_pred CHHHhCChHHHHHHHHHH-------HHH-HHhcC-CCCCeEEEECcCCCCHHHH
Confidence 688886666766666531 000 00001 2235899999999999954
No 159
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.52 E-value=1.3 Score=35.39 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++.|++.+++|||||..
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 5678899999999999953
No 160
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=73.04 E-value=3.4 Score=34.26 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=26.7
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
..|+=.++.++.|||||.+.+ -++.++.. .+-+++|+.|+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll-~~a~r~~~----------------------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELI-RRIRRAKI----------------------AKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHH-HHHHHHHH----------------------TTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHH-HHHHHHHH----------------------CCCEEEEEEecc
Confidence 346667888999999995543 44433322 255788888875
No 161
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.98 E-value=3.1 Score=48.43 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=33.3
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhH
Q 042526 42 HPLLMKSIYKLGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 42 ~~~Ll~~L~~~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafl 90 (284)
...|.+++.++|+. |++.|..=+-.+ +...+.|++.+|||||||.+|-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34566667788886 676553322222 2557889999999999998774
No 162
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.83 E-value=3 Score=37.21 Aligned_cols=19 Identities=32% Similarity=0.141 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|||||..
T Consensus 105 ~~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp ETTSEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHhHH
Confidence 3467889999999999943
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.70 E-value=1.6 Score=35.99 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=14.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|+-+++.+|+|+|||..
T Consensus 2 ~~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp ---CCEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999943
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.50 E-value=2.5 Score=37.47 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+..|++.++||||||+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 4578999999999999954
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.46 E-value=2.5 Score=38.81 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688899999999999944
No 166
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.35 E-value=2 Score=41.07 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=29.3
Q ss_pred cCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 34 DAWNELRLHPLLMKSIYKLG---FKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g---~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+|.++.=....++.|.++= +..|..++. +. + ...+.+++.+|+|||||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~--~g-~-~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKA--IG-V-KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHH--HT-C-CCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHh--cC-C-CCCCcEEEECcCCCCHHHHH
Confidence 46888755555555555421 111111111 11 1 34578999999999999643
No 167
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.23 E-value=1.3 Score=39.24 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.++++.+|+|+|||..
T Consensus 44 ~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHTCCEEEESCCCHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHH
Confidence 5688999999999999943
No 168
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.63 E-value=2.5 Score=36.39 Aligned_cols=14 Identities=36% Similarity=0.093 Sum_probs=12.0
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.++||||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 36889999999984
No 169
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=71.56 E-value=2.7 Score=36.63 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.|++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 6688899999999999943
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.54 E-value=1.9 Score=38.17 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+..+++.+|+|+|||..
T Consensus 36 ~~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SCSSEEEECSSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 357899999999999944
No 171
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=71.50 E-value=3.3 Score=38.03 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=20.6
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|+-+++.+++|+||| +|++.++..+
T Consensus 72 ~~G~li~I~G~pGsGKT-tlal~la~~~ 98 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKT-TLALAIVAQA 98 (366)
T ss_dssp ETTSEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChH-HHHHHHHHHH
Confidence 35778999999999999 5666665544
No 172
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.45 E-value=7 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
++.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999943
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.41 E-value=1.9 Score=34.76 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.6
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
..+++.+++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999943
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.33 E-value=5.6 Score=36.95 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=22.8
Q ss_pred CccccCcccCCCCHHHHHHHHHcCCCC
Q 042526 30 STEFDAWNELRLHPLLMKSIYKLGFKE 56 (284)
Q Consensus 30 p~~~~~F~~l~L~~~Ll~~L~~~g~~~ 56 (284)
+.++..+...||++..++.|.+.||.+
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 556777777899999999999999873
No 175
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.22 E-value=1.7 Score=39.37 Aligned_cols=15 Identities=40% Similarity=0.310 Sum_probs=12.5
Q ss_pred CcEEEEccCCCCchH
Q 042526 73 KDVIGAAETESGKTR 87 (284)
Q Consensus 73 ~dviv~A~TGSGKTl 87 (284)
.-+++.+|||||||.
T Consensus 4 ~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 4 KLVAIVGPTAVGKTK 18 (322)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCcCCHHH
Confidence 347889999999993
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=71.16 E-value=1.8 Score=35.40 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++.+++.+++|||||..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 4678999999999999944
No 177
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.84 E-value=1.9 Score=34.15 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
++-+++.+++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 56789999999999844
No 178
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.63 E-value=2 Score=38.78 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=12.1
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
=+++.+|||||||.
T Consensus 12 ~i~i~GptgsGKt~ 25 (316)
T 3foz_A 12 AIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47889999999993
No 179
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=70.58 E-value=4.6 Score=42.70 Aligned_cols=64 Identities=19% Similarity=0.064 Sum_probs=37.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhh
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASP 145 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~ 145 (284)
+.|.. +|.|.-|||||.+..-=++..+.... ...........-+.|+|+-|+.=|......+..
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g-----------~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLG-----------GSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCS-----------SSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCC-----------cccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 34544 89999999999776655555443210 000000112234799999998777766555543
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.50 E-value=1.6 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
...+++.+|+|+|||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45899999999999954
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.41 E-value=2.3 Score=38.80 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=17.0
Q ss_pred HcCCCcEEEEccCCCCchH
Q 042526 69 AHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 69 l~~G~dviv~A~TGSGKTl 87 (284)
+..|..+++.+|||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 3679999999999999994
No 182
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=70.31 E-value=3.7 Score=37.46 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=19.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~ 96 (284)
..|+-+++.+++|+|||. +++-++..
T Consensus 61 ~~G~ii~I~G~pGsGKTt-Lal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTT-LTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHH-HHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHH-HHHHHHHH
Confidence 457889999999999994 44444443
No 183
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=70.03 E-value=1.6 Score=35.13 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|||||.
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 567889999999999995
No 184
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.01 E-value=2.1 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4677889999999999953
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.81 E-value=1.7 Score=44.27 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred ccCccccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 28 EISTEFDAWNELRLHPLLMKSIYKLG---FKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 28 ~~p~~~~~F~~l~L~~~Ll~~L~~~g---~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+..|-.+|.+++.-....+.|.+.= +.+|..++..- + ...+.+++.+|+|+|||+..
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~-~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---M-TPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---C-CCCSCCEEESSTTSSHHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---C-CCCceEEEecCCCCCchHHH
Confidence 34456678999988888888887642 12222111110 1 23467999999999999543
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=69.51 E-value=2.8 Score=36.29 Aligned_cols=20 Identities=10% Similarity=-0.139 Sum_probs=17.2
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+++.+++|||||...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 67889999999999999543
No 187
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.43 E-value=1.8 Score=35.84 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=13.3
Q ss_pred CcEEEEccCCCCchH
Q 042526 73 KDVIGAAETESGKTR 87 (284)
Q Consensus 73 ~dviv~A~TGSGKTl 87 (284)
|-||++||+|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 568999999999994
No 188
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=69.40 E-value=2.3 Score=33.48 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 3 ~~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCCEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999843
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.24 E-value=2.9 Score=33.97 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.6
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+.+++.+++|+|||..
T Consensus 46 ~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSI 61 (250)
T ss_dssp SEEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3689999999999943
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.23 E-value=1.9 Score=38.41 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++.+++.+|+|+|||..
T Consensus 42 ~~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCCEEECBCTTSSHHHH
T ss_pred CCCCcEEEECCCCCCHHHH
Confidence 3467899999999999943
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.19 E-value=2.2 Score=35.32 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.=+++.+|+|||||..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3577889999999999943
No 192
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=68.93 E-value=2.3 Score=34.52 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|||||.
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 568889999999999984
No 193
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.77 E-value=2.5 Score=38.56 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=12.3
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+|||||||.
T Consensus 9 lI~I~GptgSGKTt 22 (340)
T 3d3q_A 9 LIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCcCcHHH
Confidence 57899999999993
No 194
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.57 E-value=4.6 Score=46.39 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHH---HcCCCcEEEEccCCCCchHHhH
Q 042526 41 LHPLLMKSIYKLGFKESTSILKARIPAL---AHQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~~pT~iQ~~aip~i---l~~G~dviv~A~TGSGKTlafl 90 (284)
+...+.+++.++|+. |++.+..-+-.+ +...+.|++.+|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345567777788886 666553322221 2557889999999999998764
No 195
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=68.46 E-value=16 Score=28.61 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=31.2
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
..++||+|+|+..|..++..+... ++.+..+.|+....+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQED 73 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH
Confidence 346999999999999999988764 677888888754444
No 196
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=68.34 E-value=2.1 Score=35.22 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+++|||||.
T Consensus 10 ~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCEEEECCTTSCHHH
T ss_pred ccCCEEEEECCCCCCHHH
Confidence 568899999999999984
No 197
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=68.24 E-value=4.3 Score=36.89 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=18.5
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..|+-+++.+++|||||. +++-++.
T Consensus 59 ~~G~iv~I~G~pGsGKTt-Lal~la~ 83 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTT-VALHAVA 83 (349)
T ss_dssp ETTSEEEEEESTTSSHHH-HHHHHHH
T ss_pred cCCeEEEEECCCCCCHHH-HHHHHHH
Confidence 457889999999999994 4444443
No 198
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.17 E-value=3 Score=39.07 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.5
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
-+++.+|||||||
T Consensus 4 ~i~i~GptgsGKt 16 (409)
T 3eph_A 4 VIVIAGTTGVGKS 16 (409)
T ss_dssp EEEEEECSSSSHH
T ss_pred EEEEECcchhhHH
Confidence 3678999999999
No 199
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=68.00 E-value=2.3 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
++.+++.+++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999943
No 200
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.55 E-value=2.1 Score=37.70 Aligned_cols=18 Identities=11% Similarity=-0.219 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
..+.+++.+|+|+|||..
T Consensus 35 ~p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp CCSEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346789999999999953
No 201
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=67.48 E-value=2.3 Score=37.18 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=26.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+|.++--....+..|... ++..+ ..- .....+++.+++|+|||..
T Consensus 10 ~~~~~ig~~~~~~~l~~~-------l~~~~-~~~-~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVY-------LEAAK-ARK-EPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp STTTCCSCHHHHHHHHHH-------HHHHH-HHC-SCCCCCEEECCTTCCCHHH
T ss_pred cHHHhhCHHHHHHHHHHH-------HHHHH-ccC-CCCCcEEEECCCCCCHHHH
Confidence 577765556666555431 11110 001 2347899999999999944
No 202
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.43 E-value=3.5 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.5
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEECCCCCCCceEe
Confidence 67876 567799999999885
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.27 E-value=7.5 Score=36.29 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+..+++.+|+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999953
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=66.94 E-value=2.4 Score=38.15 Aligned_cols=18 Identities=44% Similarity=0.409 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|..+++.++||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 679999999999999995
No 205
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.89 E-value=2.7 Score=34.00 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=13.2
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
|+-+.+.+|+|+|||.
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3457889999999995
No 206
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=66.85 E-value=2.3 Score=33.04 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.2
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+++|||||.
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999995
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=66.72 E-value=2.1 Score=34.35 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 042526 70 HQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafl 90 (284)
..|.=+.+.+|+|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 457778899999999996554
No 208
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=66.64 E-value=4.8 Score=34.93 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.+++.+|+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999954
No 209
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.62 E-value=2.8 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
...+++.+|+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999954
No 210
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.39 E-value=2.6 Score=38.20 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=30.4
Q ss_pred ccccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----cCCCcEEEEccCCCCchHH
Q 042526 31 TEFDAWNELRLHPLLMKSIYKLGFKESTSILKARIPALA----HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 31 ~~~~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il----~~G~dviv~A~TGSGKTla 88 (284)
.+-.+|.+++-...+.+.|..+=. .| ...|.++ ...+.+++.+|+|+|||+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~---~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYL 100 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTH---HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 445679998666666666654310 01 1112221 2246799999999999954
No 211
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=66.34 E-value=3.6 Score=37.76 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.0
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 101 l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 101 LDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred hCCCCEEEEEeCCCCCCccEEe
Confidence 67876 566789999999875
No 212
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.27 E-value=3.5 Score=37.82 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.1
Q ss_pred CCCc--EEEEccCCCCchHHh
Q 042526 71 QRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~d--viv~A~TGSGKTlaf 89 (284)
.|.+ |++-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 5776 688999999999876
No 213
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=66.11 E-value=5 Score=36.70 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=20.2
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
-.|.-+++.+|+||||| ++++.++..+
T Consensus 59 ~~G~i~~I~GppGsGKS-TLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKT-TLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHH-HHHHHHHHHH
Confidence 45778899999999999 4555555443
No 214
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.03 E-value=2.8 Score=37.97 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
....+++.+|+|+|||..
T Consensus 71 ~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 356899999999999954
No 215
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=66.00 E-value=5.8 Score=34.26 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=26.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+|.++--++.+++.|... +.. .....+++.+|+|+|||..
T Consensus 15 ~~~~~~g~~~~~~~l~~~-l~~-------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGY-VER-------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SGGGSCSCHHHHHHHHTT-TTT-------------TCCCCEEEESSSSSSHHHH
T ss_pred CHHHHhCCHHHHHHHHHH-HhC-------------CCCCeEEEECcCCcCHHHH
Confidence 577776677777777653 110 1122599999999999943
No 216
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=65.97 E-value=2.7 Score=33.89 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+..+++.+++|||||..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSM 26 (184)
T ss_dssp CSSCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577899999999999954
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.50 E-value=1.8 Score=41.27 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=30.8
Q ss_pred cccCcccCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKL--GFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~--g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+-.+|.++.-.....+.|.+. -+..|..++...+ .-.+.+++.+|+|+|||+..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~----~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA----RMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC----CCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC----CCCCeEEEECCCCCCHHHHH
Confidence 345799986666666665542 1222222111100 12356999999999999543
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=65.35 E-value=4.2 Score=33.84 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.5
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 042526 70 HQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafl 90 (284)
..|.-+.+.+|+|||||..+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 678889999999999995443
No 219
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=65.09 E-value=4.9 Score=32.73 Aligned_cols=21 Identities=24% Similarity=0.049 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchHHhHHHHHH
Q 042526 74 DVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 74 dviv~A~TGSGKTlafllPil~ 95 (284)
-+++.+++|||||. ++--++.
T Consensus 8 ~i~i~G~sGsGKTT-l~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTT-LLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHH-HHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHH
Confidence 46788999999983 4333443
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.86 E-value=3 Score=35.23 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+|+|||||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 5688899999999999953
No 221
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.72 E-value=5.1 Score=32.64 Aligned_cols=14 Identities=29% Similarity=0.050 Sum_probs=11.6
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+.+.+++|||||.
T Consensus 6 ~i~i~G~sGsGKTT 19 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT 19 (169)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999994
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.45 E-value=2.9 Score=33.25 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
|.-+++.+++|||||.
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5678999999999994
No 223
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.36 E-value=3.2 Score=37.53 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.9
Q ss_pred CcEEEEccCCCCchH
Q 042526 73 KDVIGAAETESGKTR 87 (284)
Q Consensus 73 ~dviv~A~TGSGKTl 87 (284)
+-+++.+|||||||.
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 358899999999994
No 224
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.28 E-value=3.3 Score=34.61 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 6788899999999999943
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.11 E-value=2.7 Score=36.51 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999543
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.89 E-value=7.9 Score=34.35 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=24.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
+|.++--++.+++.|... + ..|+- +++.+|+|+|||...
T Consensus 23 ~~~~~~g~~~~~~~L~~~---------------i-~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKF---------------V-DEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCSCHHHHHHHHHH---------------H-HTTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcCcHHHHHHHHHH---------------H-hcCCCceEEEECCCCCCHHHHH
Confidence 455554456666655421 2 34433 899999999999443
No 227
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.85 E-value=3.3 Score=33.86 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|||||..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3577899999999999843
No 228
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.74 E-value=3.3 Score=34.09 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=16.4
Q ss_pred HHHcCCCcEEEEccCCCCchHHh
Q 042526 67 ALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 67 ~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+ ..|.-+.+.+|+|||||..+
T Consensus 16 ~i-~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PA-AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHH
T ss_pred CC-CCCCEEEEECCCCCCHHHHH
Confidence 45 77888999999999999543
No 229
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=63.59 E-value=3.4 Score=34.56 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+|+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 578899999999999994
No 230
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.56 E-value=4.7 Score=36.91 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.2
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 77 LNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCcceEEEECCCCCCcceEe
Confidence 67876 566789999999885
No 231
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=63.52 E-value=4.6 Score=36.78 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.0
Q ss_pred cCCCcE--EEEccCCCCchHHh
Q 042526 70 HQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dv--iv~A~TGSGKTlaf 89 (284)
+.|.|. ++-++||||||.+.
T Consensus 80 l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 80 FEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCeeEEEecccCCCceEee
Confidence 678764 66789999999875
No 232
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.50 E-value=2.4 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+++.+++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466799999999999953
No 233
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=63.17 E-value=4.8 Score=36.70 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=19.0
Q ss_pred HHHHHHcCCCcE--EEEccCCCCchHHh
Q 042526 64 RIPALAHQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~dv--iv~A~TGSGKTlaf 89 (284)
.+..+ +.|.|+ ++-++||||||.+.
T Consensus 77 lv~~~-l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSS-LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGG-GTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHH-HCCcceeEEEeCCCCCCCceEe
Confidence 44555 788875 56689999999876
No 234
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=63.17 E-value=4.6 Score=37.11 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.3
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeecCCCCCCceEE
Confidence 67776 466799999999885
No 235
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.11 E-value=5 Score=37.36 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHcCCCcE--EEEccCCCCchHHh
Q 042526 64 RIPALAHQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~dv--iv~A~TGSGKTlaf 89 (284)
.+..+ +.|.|+ ++-++||||||.+.
T Consensus 132 lv~~~-l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSS-LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHH-HTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHH-hCCcceEEEEECCCCCCCceEe
Confidence 34444 678875 66689999999886
No 236
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.11 E-value=3 Score=33.02 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+++.+++|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999854
No 237
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.11 E-value=4 Score=37.21 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.9
Q ss_pred cCCCcE--EEEccCCCCchHHh
Q 042526 70 HQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dv--iv~A~TGSGKTlaf 89 (284)
+.|.|. ++-++||||||.+.
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCceEEEEecCCCCCCCeEE
Confidence 567764 66789999999875
No 238
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.86 E-value=4.8 Score=36.45 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 64 RIPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
.+..+ +.|.| |++-++||||||.+.
T Consensus 72 lv~~~-l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSC-IDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHH-HTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-hCCCEEEEEeECCCCCCCcEEE
Confidence 34444 67876 566799999999876
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.84 E-value=7.2 Score=34.49 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=27.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 35 AWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 35 ~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
+|.++--++.+++.|...=+. . .....+++.+|+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~------------~-~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQ------------P-RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTC------------T-TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhh------------C-CCCCeEEEECCCCCCHHHHH
Confidence 577776677888777654211 1 12234999999999999543
No 240
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.68 E-value=5 Score=36.72 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.2
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 102 l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 102 LNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTTCCEEEEEECCTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCceeee
Confidence 67876 466789999999875
No 241
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=62.53 E-value=3.1 Score=32.72 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+++.+++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999853
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=62.42 E-value=3.7 Score=33.49 Aligned_cols=20 Identities=20% Similarity=-0.100 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+++.+++|+|||...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHH
Confidence 45778899999999999443
No 243
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=62.41 E-value=4.9 Score=36.72 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.1
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 86 l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 86 LEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceeEEeecCCCCCCCEEe
Confidence 67776 466789999999885
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.28 E-value=2.7 Score=38.33 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.6
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
++-+++.+|||||||.
T Consensus 40 ~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSR 55 (339)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4568999999999993
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=62.22 E-value=5.5 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
.++.++... .+ ..|.-+++.+++|||||.
T Consensus 12 ~~~~~r~~~-~~-~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 12 LTRSERTEL-RN-QRGLTIWLTGLSASGKST 40 (211)
T ss_dssp CCHHHHHHH-HT-SSCEEEEEECSTTSSHHH
T ss_pred cCHHHhhcc-cC-CCCCEEEEECCCCCCHHH
Confidence 456666653 34 678889999999999984
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.04 E-value=3.3 Score=32.37 Aligned_cols=14 Identities=14% Similarity=-0.114 Sum_probs=12.2
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-|++.+++|||||.
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999994
No 247
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.01 E-value=4.9 Score=35.42 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999944
No 248
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=61.92 E-value=4.9 Score=37.08 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=15.8
Q ss_pred cCCCcE--EEEccCCCCchHHh
Q 042526 70 HQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dv--iv~A~TGSGKTlaf 89 (284)
+.|.|. ++-++||||||.+.
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred hCCCeeeEEeecCCCCCCCEeE
Confidence 677764 56789999999874
No 249
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.56 E-value=4.8 Score=36.90 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.9
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCCceEE
Confidence 67876 466789999999765
No 250
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=61.43 E-value=15 Score=32.96 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHcCCC-----CCcHHHHHHHHHHHcC----------------CCcEEEEccCCCCch-HHh
Q 042526 41 LHPLLMKSIYKLGFK-----ESTSILKARIPALAHQ----------------RKDVIGAAETESGKT-RAF 89 (284)
Q Consensus 41 L~~~Ll~~L~~~g~~-----~pT~iQ~~aip~il~~----------------G~dviv~A~TGSGKT-laf 89 (284)
.++.+++...+.|+. .+|.--...+-.++.. |+-+++.+++|+||+ +|.
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 588889988888764 2222222222222132 889999999999995 443
No 251
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=61.34 E-value=5.2 Score=36.74 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.9
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 86 l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCeeEEEEeCCCCCCCceEe
Confidence 67776 466789999999775
No 252
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.25 E-value=4.3 Score=37.37 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHcCCCcE--EEEccCCCCchHHh
Q 042526 65 IPALAHQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 65 ip~il~~G~dv--iv~A~TGSGKTlaf 89 (284)
+..+ +.|.|. ++-++||||||.+.
T Consensus 72 v~~~-l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSA-VDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHH-HTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhh-hcCCceEEEEECCCCCCCeEee
Confidence 3444 678764 56689999999886
No 253
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=61.12 E-value=5.3 Score=37.35 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.9
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 151 l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHHH
T ss_pred hcCCceeEEeecCCCCCCCeEe
Confidence 66776 566789999999875
No 254
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.00 E-value=5.2 Score=36.67 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.0
Q ss_pred cCCCcE--EEEccCCCCchHHh
Q 042526 70 HQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dv--iv~A~TGSGKTlaf 89 (284)
+.|.|+ ++-++||||||.+.
T Consensus 100 l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 100 LDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred hCCCceEEEEECCCCCCCceEe
Confidence 678775 66689999999875
No 255
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=60.85 E-value=5.3 Score=36.55 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.4
Q ss_pred cCCCcE--EEEccCCCCchHHh
Q 042526 70 HQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dv--iv~A~TGSGKTlaf 89 (284)
+.|.|. ++-++||||||.+.
T Consensus 89 l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHHH
T ss_pred hCCceeEEEeeCCCCCCCceEE
Confidence 678775 66789999999886
No 256
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.69 E-value=4.8 Score=37.64 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHcCCCcE--EEEccCCCCchHHh
Q 042526 64 RIPALAHQRKDV--IGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~dv--iv~A~TGSGKTlaf 89 (284)
.+..+ +.|.|+ ++-++||||||.+.
T Consensus 130 lv~~~-l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSA-LDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHH-HTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-HCCCceEEEEecCCCCCCeeEe
Confidence 34445 678775 66689999999885
No 257
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=60.59 E-value=5.4 Score=36.44 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.2
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 74 l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred HcCCccceeeecCCCCCCCeEE
Confidence 67776 466789999999886
No 258
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.27 E-value=4 Score=36.19 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+..+++.+|+|+|||..
T Consensus 44 ~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCCEEEEECTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999954
No 259
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=60.14 E-value=5.1 Score=42.23 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=27.7
Q ss_pred EEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHh
Q 042526 76 IGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVAS 144 (284)
Q Consensus 76 iv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~ 144 (284)
+|.|..|||||.+.+-=+.. +.... ..+.+.|+|||.. +..+....+.
T Consensus 5 lV~agAGSGKT~~l~~ri~~-ll~~~-------------------~~~~~il~lVP~q-~TFt~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQD-ELRRA-------------------PFGKPIIFLVPDQ-MTFLMEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHH-HHHHC-------------------TTSSCEEEECCGG-GHHHHHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHH-HHHhC-------------------CCCCcEEEEecCc-ccHHHHHHHH
Confidence 67888999999655433333 22211 1335688888876 4444444433
No 260
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=60.12 E-value=25 Score=27.35 Aligned_cols=39 Identities=13% Similarity=0.039 Sum_probs=30.8
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
..++||+|+|++.|..++..+... ++.+..+.|+....+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQE 68 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 357999999999999999888763 677888888754444
No 261
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=59.82 E-value=4 Score=36.43 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.+++.+|+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999954
No 262
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=59.73 E-value=5.5 Score=32.99 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCCchHHhH
Q 042526 70 HQRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafl 90 (284)
..|.-+++.+|+|+|||....
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHH
Confidence 567889999999999995443
No 263
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.72 E-value=56 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
..++||+|+|+.-|..++..+... ++.+..+.|+....+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQ 304 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHH
Confidence 347999999999999999988765 667788888755444
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.43 E-value=3.9 Score=33.04 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.++.|||||..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 3577899999999999943
No 265
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=58.78 E-value=5.9 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.0
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.+ |++-++||||||.+.
T Consensus 131 l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 131 FEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HTTCEEEEEEESCTTSSHHHHH
T ss_pred hcCCceEEEEecCCCCCCCeEe
Confidence 67776 566789999999875
No 266
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.70 E-value=10 Score=33.13 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=25.6
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHHh
Q 042526 34 DAWNELRLHPLLMKSIYKLGFKESTSILKARIPALAHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 34 ~~F~~l~L~~~Ll~~L~~~g~~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTlaf 89 (284)
.+|.++-.++.+++.|... +..- ...+-+++.+|+|+|||...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~------------l~~~-~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 23 STIDECILPAFDKETFKSI------------TSKG-KIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHH------------HHTT-CCCSEEEECSSTTSSHHHHH
T ss_pred CCHHHHhCcHHHHHHHHHH------------HHcC-CCCeEEEeeCcCCCCHHHHH
Confidence 4678877777776666531 1011 11234567777999999543
No 267
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=58.58 E-value=18 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=31.5
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSE 166 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~ 166 (284)
..++||.|+|+..|..++..+... ++.+..+.|+....+.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQR 73 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH
Confidence 457999999999999999888754 6778888887554443
No 268
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=58.56 E-value=12 Score=33.07 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.5
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+-+++.+|+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSI 54 (373)
T ss_dssp SEEEEESCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999954
No 269
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=58.36 E-value=5.5 Score=36.96 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHH
T ss_pred hcCceeeEeeecCCCCCCCeEe
Confidence 67876 466789999999886
No 270
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.29 E-value=4 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+.+.+|+|||||...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 56788999999999999443
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=58.25 E-value=3.3 Score=33.28 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
|.-+++.+++|||||..
T Consensus 2 g~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34578899999999954
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=58.17 E-value=3.6 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTL 21 (193)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999953
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.97 E-value=3.8 Score=34.21 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5688889999999999954
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.28 E-value=3.9 Score=33.23 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-|++.+++|||||..
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455789999999999953
No 275
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=57.25 E-value=6.5 Score=32.68 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-.++.+++|||||+.
T Consensus 7 i~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 7 ICLITGTPGSGKTLK 21 (199)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 468999999999974
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.07 E-value=5 Score=32.07 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+.-+++.+++|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5677899999999999953
No 277
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.60 E-value=6.9 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.3
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 133 l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hcCCceEEEEeCCCCCCCCEEe
Confidence 67876 566789999999886
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.51 E-value=4.8 Score=33.07 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.0
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 20 ~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKST 37 (208)
T ss_dssp CSCEEEEEECCTTSCTHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 457778899999999984
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=56.30 E-value=4.7 Score=32.90 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 57 STSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
.+..+...+- . ..|.-+++.+++|||||..
T Consensus 12 ~~~~~~~~~~-~-~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRLL-D-QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHHH-T-SCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHhc-C-CCCeEEEEECCCCCCHHHH
Confidence 4455554432 2 5678899999999999843
No 280
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=56.20 E-value=5.2 Score=33.17 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+++|+||+.
T Consensus 14 v~G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSE 31 (181)
T ss_dssp ETTEEEEEEESSSSSHHH
T ss_pred ECCEEEEEEcCCCCCHHH
Confidence 358899999999999983
No 281
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=55.90 E-value=27 Score=27.57 Aligned_cols=39 Identities=3% Similarity=-0.037 Sum_probs=30.9
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
..++||+|+|+.-|..++..+... ++.+..+.|+....+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEE 69 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHH
Confidence 346999999999999999888764 677888888754444
No 282
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=55.78 E-value=12 Score=34.78 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=35.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-CCcccccc
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-PNKRKRTR 180 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-~~i~v~~~ 180 (284)
+-++||+|||++-|..++..++.. ++.+.++.|.........++.+ ..+++.|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 347999999999999999888765 6788888886544445555544 45555553
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.71 E-value=4.9 Score=35.26 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.-++++|++|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55689999999999843
No 284
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=55.69 E-value=17 Score=40.67 Aligned_cols=20 Identities=25% Similarity=-0.039 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCCchHHhH
Q 042526 71 QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafl 90 (284)
.|+.+++.+|+|+|||...+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ 1445 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTL 1445 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 48999999999999995443
No 285
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=55.55 E-value=11 Score=34.81 Aligned_cols=53 Identities=4% Similarity=-0.102 Sum_probs=38.8
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-CCcccccc
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-PNKRKRTR 180 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-~~i~v~~~ 180 (284)
-++||+|||++-|..++..++.. ++.+..+.|.........++.+ .++++.|.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 37999999999999999988865 6788888887544444455544 55566553
No 286
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=55.52 E-value=4.9 Score=31.97 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=12.4
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-.++.+++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 457889999999954
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.46 E-value=6.6 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHcCCCcEEEEccCCCCchHH
Q 042526 64 RIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 64 aip~il~~G~dviv~A~TGSGKTla 88 (284)
.+..++..|+.+++.+|||||||..
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHH
Confidence 3344447799999999999999964
No 288
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=55.26 E-value=8.1 Score=38.43 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCH
Q 042526 56 ESTSILKARIPALAHQ--RKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTR 133 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTR 133 (284)
.+|.-|..|+..+ .. ..-.++.|..|.|||.+..+.+-. + . -.++|.+||.
T Consensus 175 ~~T~dQ~~al~~~-~~~~~~~~vlta~RGRGKSa~lG~~~a~-~-~------------------------~~~~vtAP~~ 227 (671)
T 2zpa_A 175 APQPEQQQLLKQL-MTMPPGVAAVTAARGRGKSALAGQLISR-I-A------------------------GRAIVTAPAK 227 (671)
T ss_dssp SCCHHHHHHHHHH-TTCCSEEEEEEECTTSSHHHHHHHHHHH-S-S------------------------SCEEEECSSC
T ss_pred CCCHHHHHHHHHH-HHhhhCeEEEecCCCCCHHHHHHHHHHH-H-H------------------------hCcEEECCCH
Confidence 6799999999887 33 224688999999999555444321 1 0 1258889998
Q ss_pred HHHHHHHHHH
Q 042526 134 ELALQVLMVA 143 (284)
Q Consensus 134 eLa~Qi~~~~ 143 (284)
+=+..+...+
T Consensus 228 ~a~~~l~~~~ 237 (671)
T 2zpa_A 228 ASTDVLAQFA 237 (671)
T ss_dssp CSCHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8666555543
No 289
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=55.17 E-value=5.2 Score=33.52 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=15.2
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..+..+++.+++|||||.
T Consensus 14 ~~~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 446789999999999984
No 290
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.02 E-value=5.5 Score=37.50 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
...++++.+|+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 356899999999999954
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.72 E-value=5.1 Score=34.09 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 567888999999999994
No 292
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=54.65 E-value=5 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=14.5
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.|.-|++.+++|||||.
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 46678999999999994
No 293
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.62 E-value=6 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
+.|..+++.+++|||||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3499999999999999954
No 294
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=54.54 E-value=40 Score=27.62 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=30.4
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
-++||.|+|+.-+..++..+... ++.+..++|+....+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGE 69 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 47999999999999999888764 677888888754444
No 295
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.31 E-value=6.3 Score=31.96 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.4
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999943
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=53.88 E-value=5.1 Score=31.86 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.-|++.+++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999854
No 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.75 E-value=8 Score=37.62 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.5
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|..+++.+|+|+|||...
T Consensus 58 ~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHH
Confidence 78899999999999999443
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.63 E-value=5.3 Score=37.56 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
..+++.+|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999954
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.54 E-value=3.9 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.104 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+++|||||.
T Consensus 19 ~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCCEEEEEEESTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 556778899999999994
No 300
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=53.39 E-value=13 Score=31.05 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|+=.++.++.|||||..
T Consensus 19 ~g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CCEEEEEEECTTSCHHHH
T ss_pred ceEEEEEECCCCCcHHHH
Confidence 466778899999999943
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.35 E-value=5.6 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
.+-|++.+++|||||..
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34789999999999953
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=53.10 E-value=5.9 Score=32.70 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+..+++.+++|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678999999999984
No 303
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=53.07 E-value=5.8 Score=36.15 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 64 RIPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
.+..+ +.|.| |++-++||||||.+.
T Consensus 76 lv~~~-l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSS-LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGG-GGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHh-cCCceeEEEEECCCCCCCcEec
Confidence 34444 67887 466789999999876
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.05 E-value=5.7 Score=31.54 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.|.-+++.+++|||||.
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46778999999999985
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=53.01 E-value=9.8 Score=36.55 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..+..+++.+.||||||.+.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHH
T ss_pred ccCceEEEECCCCCCHHHHH
Confidence 34678999999999999653
No 306
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.96 E-value=6.6 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999543
No 307
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=52.94 E-value=14 Score=31.23 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
.|+=.++.++-|||||.+. +-++.++.. .+-+++|+.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~l-L~~a~r~~~----------------------~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEEL-IRRVRRTQF----------------------AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHH----------------------CCCEEEEEEeccC
Confidence 3554567888899999554 333333322 2457899988764
No 308
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=52.88 E-value=6 Score=31.05 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=11.7
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
.++.+|+|||||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57789999999954
No 309
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.69 E-value=5.6 Score=32.44 Aligned_cols=18 Identities=33% Similarity=0.117 Sum_probs=14.2
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+.+.+++|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455678899999999943
No 310
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.14 E-value=7.1 Score=38.11 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999953
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=51.69 E-value=5.5 Score=31.57 Aligned_cols=14 Identities=21% Similarity=0.036 Sum_probs=12.1
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-|++.+++|||||.
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=51.38 E-value=9.8 Score=33.95 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 124 ~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TTCSEEEEECSSSSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 568899999999999983
No 313
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.35 E-value=6 Score=36.00 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.2
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
-+++.+|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999554
No 314
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=50.77 E-value=23 Score=28.67 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=30.7
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
.++||+|+|+.-|..++..+... ++.+..+.|+....+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~ 92 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEE 92 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH
Confidence 46999999999999999988765 677888888755444
No 315
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.74 E-value=2.3 Score=43.22 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=33.2
Q ss_pred cCccccCcccCCCCHHHHHHHHHcC-C--CCCcHHHHHHHHHHHcCCCcEEEEccCCCCchHH
Q 042526 29 ISTEFDAWNELRLHPLLMKSIYKLG-F--KESTSILKARIPALAHQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 29 ~p~~~~~F~~l~L~~~Ll~~L~~~g-~--~~pT~iQ~~aip~il~~G~dviv~A~TGSGKTla 88 (284)
+..+-.+|.++.-...+.+.|..+- + ..+.... .+ .+ ..+..+++.+|+|+|||+.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~--~~-~~-~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFL--KF-GM-TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTT--CC-CC-CCCCCCCCBCCTTSSHHHH
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHH--hc-CC-CCCceeEEECCCCCCHHHH
Confidence 3445567888866666666666531 1 1111100 00 11 4577899999999999963
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.59 E-value=6.1 Score=37.41 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=18.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..|.=+++.|++|+||| +|++-++.
T Consensus 240 ~~G~l~li~G~pG~GKT-~lal~~a~ 264 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMS-TFVRQQAL 264 (503)
T ss_dssp CTTCEEEEEESSCHHHH-HHHHHHHH
T ss_pred CCCeEEEEeecCCCCch-HHHHHHHH
Confidence 56788999999999999 44444443
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=50.50 E-value=6.4 Score=32.18 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.|++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999843
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=50.44 E-value=6.7 Score=31.36 Aligned_cols=19 Identities=26% Similarity=0.076 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+++.+++|||||..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp SCCEEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 3567889999999999953
No 319
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.41 E-value=6.7 Score=37.74 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999943
No 320
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=50.32 E-value=8.5 Score=38.35 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=18.8
Q ss_pred HHHHHHcCCCc--EEEEccCCCCchHHh
Q 042526 64 RIPALAHQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 64 aip~il~~G~d--viv~A~TGSGKTlaf 89 (284)
.+..+ +.|.| |++-++||||||.+.
T Consensus 454 ~v~~~-~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCS-LDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHH-HTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-hCCceEEEEccCCCCCchhhcc
Confidence 45555 77876 456689999999875
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=50.31 E-value=8.6 Score=31.55 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
|.-+.+.+++|+|||..+
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 445788999999999543
No 322
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=50.27 E-value=7.2 Score=31.63 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-|++.++.|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCCEEEEEESTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 4577899999999999943
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.25 E-value=6.8 Score=32.53 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.5
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 456799999999999953
No 324
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=50.08 E-value=8 Score=34.16 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.|+-+++.+++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3667889999999999544
No 325
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.96 E-value=7.6 Score=36.66 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999953
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.94 E-value=7.7 Score=30.80 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.4
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.-|++.+++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999853
No 327
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.79 E-value=7 Score=39.03 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
...++++.+|+|+|||..
T Consensus 200 ~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 356899999999999954
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=49.74 E-value=7.1 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQ 21 (222)
T ss_dssp CSCCEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456799999999999843
No 329
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.73 E-value=6.4 Score=36.25 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.8
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hCCceEEEEeecCCCCCcceec
Confidence 56776 566789999999775
No 330
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=49.62 E-value=7.2 Score=35.08 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCch-HHh
Q 042526 70 HQRKDVIGAAETESGKT-RAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKT-laf 89 (284)
..|+-+++.+++|+||+ +|.
T Consensus 145 ~~g~gvli~G~sG~GKStlal 165 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECAL 165 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHH
Confidence 34888999999999995 554
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.59 E-value=7.4 Score=30.74 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=12.5
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
.+++.+++|||||.
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 68899999999984
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=49.18 E-value=6.9 Score=32.03 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.7
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.|++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999854
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=49.02 E-value=6.9 Score=30.98 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.3
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+-+++.+++|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999953
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.95 E-value=8.2 Score=30.82 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..+.-|++.+++|||||..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHSCEEEEEECTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466799999999999843
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.90 E-value=7.3 Score=30.44 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=13.3
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+-+++.+++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999853
No 336
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=48.74 E-value=24 Score=33.16 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
.-+++.+++|+|||...
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788999999999554
No 337
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.69 E-value=9.9 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCcEEEEccCCCCchH
Q 042526 62 KARIPALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 62 ~~aip~il~~G~dviv~A~TGSGKTl 87 (284)
...+..++..|+.|++++|||||||.
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 33444455789999999999999994
No 338
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=48.44 E-value=6 Score=31.41 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.4
Q ss_pred CCcEEEEccCCCCch
Q 042526 72 RKDVIGAAETESGKT 86 (284)
Q Consensus 72 G~dviv~A~TGSGKT 86 (284)
.-.|++.+.+|+|||
T Consensus 21 ~~ki~v~G~~~~GKS 35 (190)
T 2h57_A 21 EVHVLCLGLDNSGKT 35 (190)
T ss_dssp CEEEEEEECTTSSHH
T ss_pred ccEEEEECCCCCCHH
Confidence 447999999999999
No 339
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=47.90 E-value=8.6 Score=32.68 Aligned_cols=18 Identities=17% Similarity=0.136 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 568888999999999984
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.86 E-value=9.1 Score=32.14 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688889999999999943
No 341
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=47.83 E-value=25 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.2
Q ss_pred CCCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 71 QRKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.| -+.+.+++||||| ++++.++..+.
T Consensus 28 ~G-iteI~G~pGsGKT-tL~Lq~~~~~~ 53 (333)
T 3io5_A 28 SG-LLILAGPSKSFKS-NFGLTMVSSYM 53 (333)
T ss_dssp SE-EEEEEESSSSSHH-HHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHH-HHHHHHHHHHH
Confidence 46 5889999999999 45555554443
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=47.76 E-value=7.8 Score=31.83 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=13.7
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.-+.+.+++|||||..
T Consensus 5 ~~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 5 APVITIDGPSGAGKGTL 21 (227)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999843
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.59 E-value=8.5 Score=31.15 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-|++.++.|||||.
T Consensus 8 ~~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKST 25 (212)
T ss_dssp BCSCEEEEEESTTSSHHH
T ss_pred hcCCEEEEEcCCCCCHHH
Confidence 457789999999999994
No 344
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.57 E-value=8 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.++++.+..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999953
No 345
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=47.57 E-value=7.4 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 567778899999999994
No 346
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.45 E-value=7.7 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5677888999999999943
No 347
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=47.37 E-value=7.8 Score=31.36 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+.+.+++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999954
No 348
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=47.28 E-value=38 Score=29.24 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=13.3
Q ss_pred CcEEEEccCCCCchH
Q 042526 73 KDVIGAAETESGKTR 87 (284)
Q Consensus 73 ~dviv~A~TGSGKTl 87 (284)
.-+++.++.|+|||.
T Consensus 31 ~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 31 PITLVLGLRRTGKSS 45 (357)
T ss_dssp SEEEEEESTTSSHHH
T ss_pred CcEEEECCCCCCHHH
Confidence 478999999999993
No 349
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=47.24 E-value=12 Score=33.18 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=20.7
Q ss_pred cHHHHHHHHHH---HcCCC---cEEEEccCCCCchHHh
Q 042526 58 TSILKARIPAL---AHQRK---DVIGAAETESGKTRAF 89 (284)
Q Consensus 58 T~iQ~~aip~i---l~~G~---dviv~A~TGSGKTlaf 89 (284)
.|.|..++..+ +.+|+ -+++.+|+|+|||...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 35555555443 13443 4899999999999443
No 350
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=47.22 E-value=7.8 Score=33.35 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 5688889999999999943
No 351
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=47.12 E-value=7.4 Score=35.87 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.1
Q ss_pred cCCCc--EEEEccCCCCchHHh
Q 042526 70 HQRKD--VIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~d--viv~A~TGSGKTlaf 89 (284)
+.|.| |++-++||||||.+.
T Consensus 112 l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 112 LDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp GGTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCceEEEEeCCCCCCCceEe
Confidence 67876 466689999999876
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=47.00 E-value=7.3 Score=30.74 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=10.4
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999953
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.65 E-value=8.8 Score=32.28 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.-+++.+++|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999843
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=46.63 E-value=10 Score=33.68 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.|.-+.+.+|+|||||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4667888999999998543
No 355
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.39 E-value=7 Score=39.60 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..++.+++.+|+|||||+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCEEEECSCTTSSHHHH
T ss_pred CCCCeEEEECcCCCCHHHH
Confidence 4578899999999999954
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=46.36 E-value=8.2 Score=33.37 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5677888999999999943
No 357
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=46.36 E-value=9.4 Score=32.21 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688889999999999943
No 358
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=46.25 E-value=9.3 Score=32.69 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688889999999999954
No 359
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.07 E-value=40 Score=31.51 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
++-+++.+++|+|||...
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788899999999554
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=46.06 E-value=8 Score=33.09 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.7
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
+.-|++.+++|||||.
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 4568999999999994
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.04 E-value=8.6 Score=31.20 Aligned_cols=15 Identities=33% Similarity=0.071 Sum_probs=12.3
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+.+.+++|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999854
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=46.03 E-value=9.5 Score=32.93 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5688899999999999943
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=45.96 E-value=8.6 Score=31.73 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.4
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+..+++.+++|||||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGT 20 (217)
T ss_dssp GCCEEEEEECTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 35678999999999984
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=45.91 E-value=8.4 Score=31.10 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.3
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
+-|++.+++|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4578899999999954
No 365
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.65 E-value=8.4 Score=36.85 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=29.9
Q ss_pred cccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHH-HcCCCcEEEEccCCCCchHHh
Q 042526 32 EFDAWNELRLHPLLMKSIYKLG--FKESTSILKARIPAL-AHQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 32 ~~~~F~~l~L~~~Ll~~L~~~g--~~~pT~iQ~~aip~i-l~~G~dviv~A~TGSGKTlaf 89 (284)
+-.+|.++.-.+.....|.+.- |..|.. +..+ +.-.+.+++.+|+|||||+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~-----~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSR-----FHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGG-----TTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhh-----hhhccCCCCceEEEECCCCCCHHHHH
Confidence 4467999876666666665421 111110 0000 011345999999999999543
No 366
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=45.55 E-value=8.1 Score=35.01 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=12.3
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
=.++.++||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357889999999954
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.46 E-value=10 Score=32.13 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+.-|++.+++|||||.
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46679999999999984
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=45.27 E-value=8.7 Score=33.05 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5677888999999999943
No 369
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=45.25 E-value=20 Score=30.47 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRE 134 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTRe 134 (284)
..|.=.++.++-|||||.+. +-.+.++.. .+.+++|+.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~L-lr~~~r~~~----------------------~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEEL-IRRLRRGIY----------------------AKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHH-HHHHHHHHH----------------------cCCceEEEEeccC
Confidence 44666788999999999443 344443322 2456889988654
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.22 E-value=9.6 Score=33.75 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.|.-+.+.+|+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556788999999999554
No 371
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=45.19 E-value=6.4 Score=41.57 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=38.0
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhhh
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPSL 147 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l~ 147 (284)
..|.-..+.+-||||||++.. .+ ... ... ..|||+|+..+|.|+++.+..|.
T Consensus 15 ~~~~~~~l~G~~gs~ka~~~a--~l---~~~--------------------~~~-p~lvv~~~~~~A~~l~~el~~f~ 66 (1151)
T 2eyq_A 15 KAGEQRLLGELTGAACATLVA--EI---AER--------------------HAG-PVVLIAPDMQNALRLHDEISQFT 66 (1151)
T ss_dssp STTCBCCBCCCCTTHHHHHHH--HH---HHS--------------------SSS-EEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCeEEEeCCchHHHHHHHH--HH---HHh--------------------hCC-CEEEEeCCHHHHHHHHHHHHhhc
Confidence 556556778889999985543 21 121 012 38999999999999999999996
No 372
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=45.17 E-value=8.8 Score=33.28 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688889999999999944
No 373
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.12 E-value=8.9 Score=29.78 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.|++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999843
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.07 E-value=8.3 Score=30.84 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=12.1
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+++|||||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47889999999994
No 375
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=45.00 E-value=8.8 Score=32.65 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5677889999999999943
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.95 E-value=8.8 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.+.++++.+++|+|||..
T Consensus 206 ~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEcCCCCCHHHH
Confidence 367899999999999954
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.89 E-value=10 Score=33.20 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5687889999999999943
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=44.82 E-value=7.1 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.3
Q ss_pred CCCcEEEEccCCCCchH
Q 042526 71 QRKDVIGAAETESGKTR 87 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTl 87 (284)
.+.-+++.+++|||||.
T Consensus 31 ~~~~i~l~G~~GsGKST 47 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTT 47 (253)
T ss_dssp SCEEEEEESCGGGTTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35578999999999994
No 379
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.49 E-value=9.4 Score=31.47 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=12.0
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
=.++.+++|||||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 357789999999954
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.47 E-value=7.3 Score=31.62 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=11.5
Q ss_pred EEEEccCCCCchH
Q 042526 75 VIGAAETESGKTR 87 (284)
Q Consensus 75 viv~A~TGSGKTl 87 (284)
|++.+++|||||.
T Consensus 3 I~i~G~~GsGKsT 15 (214)
T 1gtv_A 3 IAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEHHH
T ss_pred EEEEcCCCCCHHH
Confidence 6789999999994
No 381
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=44.45 E-value=15 Score=35.00 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=20.3
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRL 97 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l 97 (284)
..|.-+.+.+++|||||.-..+-++..+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999955444333333
No 382
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=44.43 E-value=24 Score=34.87 Aligned_cols=53 Identities=4% Similarity=-0.098 Sum_probs=37.8
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-CCccccc
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-PNKRKRT 179 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-~~i~v~~ 179 (284)
+-++||+|||++-|..++..++.. ++.+..++|.........++.+ ..+++.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC
Confidence 457999999999999998888764 7788889986443334444444 4555555
No 383
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=44.36 E-value=13 Score=32.30 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.++.|+|||.
T Consensus 29 ~~~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 29 ENYPLTLLLGIRRVGKSS 46 (350)
T ss_dssp HHCSEEEEECCTTSSHHH
T ss_pred hcCCeEEEECCCcCCHHH
Confidence 346889999999999994
No 384
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=44.32 E-value=8.8 Score=30.56 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=15.0
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457678899999999993
No 385
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.98 E-value=11 Score=32.33 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688888999999999954
No 386
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=43.84 E-value=7.5 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=13.8
Q ss_pred cCCCcEEEEccCCCCch
Q 042526 70 HQRKDVIGAAETESGKT 86 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKT 86 (284)
...-.|++.+.+|+|||
T Consensus 19 ~~~~~i~v~G~~~~GKS 35 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKT 35 (181)
T ss_dssp --CEEEEEEEETTSSHH
T ss_pred CceeEEEEECCCCCCHH
Confidence 44568999999999999
No 387
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=43.67 E-value=11 Score=32.78 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 5688888999999999943
No 388
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=43.58 E-value=5.8 Score=31.57 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHcCCCcEEEEccCCCCch
Q 042526 56 ESTSILKARIPALAHQRKDVIGAAETESGKT 86 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~dviv~A~TGSGKT 86 (284)
++++.|....|......-.|++.+.+|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKS 36 (188)
T 1zd9_A 6 HHHHHSSGLVPRGSKEEMELTLVGLQYSGKT 36 (188)
T ss_dssp -------------CCEEEEEEEECSTTSSHH
T ss_pred ccccccccccccCCCCccEEEEECCCCCCHH
Confidence 4666777777766333458999999999999
No 389
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.45 E-value=9.7 Score=30.15 Aligned_cols=14 Identities=29% Similarity=0.107 Sum_probs=11.9
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+++|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36889999999994
No 390
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=43.08 E-value=11 Score=32.54 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 5677888999999999953
No 391
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=42.90 E-value=9.4 Score=31.81 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=11.9
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
.+++.+|+||||+.
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999973
No 392
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.87 E-value=18 Score=35.35 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchHHhH
Q 042526 72 RKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafl 90 (284)
...+++.+.||||||.+.-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp SCCEEEECCTTSSHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 393
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=42.76 E-value=11 Score=32.03 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+++|||||..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TTSCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3467789999999999844
No 394
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=42.66 E-value=11 Score=32.26 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 5687888999999999943
No 395
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.61 E-value=12 Score=32.38 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 5677888999999999943
No 396
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.27 E-value=14 Score=36.82 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
.+++.+|||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999543
No 397
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.26 E-value=10 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.075 Sum_probs=14.3
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+.+.+++|||||..
T Consensus 21 ~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SSEEEEEEECTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688899999999943
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.16 E-value=14 Score=37.51 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
.+++++.+|+|+|||.
T Consensus 191 ~~~vlL~G~pG~GKT~ 206 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTA 206 (854)
T ss_dssp CCCCEEEECTTSCHHH
T ss_pred CCceEEEcCCCCCHHH
Confidence 4589999999999994
No 399
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.85 E-value=16 Score=27.75 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=12.1
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.|++.+++|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (170)
T 1ek0_A 5 KLVLLGEAAVGKS 17 (170)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 400
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.72 E-value=12 Score=32.49 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 43 ~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKST 60 (271)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 568888999999999994
No 401
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=41.53 E-value=11 Score=30.02 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=11.9
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
|++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999843
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=41.27 E-value=11 Score=30.99 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=12.2
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
.+++.+++|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 403
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.23 E-value=11 Score=32.57 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
.+++.+|+|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999943
No 404
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=41.16 E-value=12 Score=32.33 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 5677888999999999943
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=40.94 E-value=13 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+++.+++|||||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 367789999999999943
No 406
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=40.91 E-value=11 Score=33.65 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.2
Q ss_pred EEEEccCCCCchHHh
Q 042526 75 VIGAAETESGKTRAF 89 (284)
Q Consensus 75 viv~A~TGSGKTlaf 89 (284)
.++.+|||+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468899999999653
No 407
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=40.87 E-value=11 Score=31.73 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.=+-+.+|+|||||...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 44656778999999999543
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=40.85 E-value=17 Score=29.41 Aligned_cols=16 Identities=31% Similarity=0.098 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCCchH
Q 042526 72 RKDVIGAAETESGKTR 87 (284)
Q Consensus 72 G~dviv~A~TGSGKTl 87 (284)
-..+++.+.+|+|||.
T Consensus 30 ~~~i~i~G~~g~GKTT 45 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTL 45 (221)
T ss_dssp CEEEEEEECTTSCHHH
T ss_pred ceEEEEEcCCCCCHHH
Confidence 4578899999999993
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=40.58 E-value=11 Score=30.15 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=13.0
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.-|.+.+++|||||..
T Consensus 9 ~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999954
No 410
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=40.50 E-value=14 Score=33.02 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
|.-+++.+++|||||..
T Consensus 122 G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SEEEEEECCTTCTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999943
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=40.46 E-value=11 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=13.8
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.-+.+.+++|||||..
T Consensus 4 ~~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTV 20 (218)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34678999999999953
No 412
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=40.26 E-value=11 Score=31.79 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.1
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
...+-|++.+|+||||+.
T Consensus 27 ~k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp TSCEEEEEECCTTCCHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 445567889999999963
No 413
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=40.04 E-value=13 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||.-
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 5687888999999999943
No 414
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=39.90 E-value=30 Score=27.76 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=26.9
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCc
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPL 162 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~ 162 (284)
+.++||+|+|+.-|..++..+... ++.+..+.|+..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~ 81 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRS 81 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC----
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCC
Confidence 457999999999999999888764 677888888643
No 415
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=39.89 E-value=11 Score=38.25 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
-+.|++.+|+|||||+.
T Consensus 238 p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36899999999999954
No 416
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.66 E-value=18 Score=35.96 Aligned_cols=16 Identities=31% Similarity=0.171 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchHHh
Q 042526 74 DVIGAAETESGKTRAF 89 (284)
Q Consensus 74 dviv~A~TGSGKTlaf 89 (284)
.+++.+|||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999543
No 417
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=39.54 E-value=9.9 Score=30.08 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.8
Q ss_pred ccccccchhh
Q 042526 201 TTTLLPSSLA 210 (284)
Q Consensus 201 ~~gflp~~~~ 210 (284)
.+.||.++++
T Consensus 88 ~~dFL~divP 97 (140)
T 2byk_A 88 NLEFLLQIVP 97 (140)
T ss_dssp TTGGGTTTSC
T ss_pred hhhhHhcccc
Confidence 4466666654
No 418
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=39.47 E-value=30 Score=29.99 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=17.8
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQ 95 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~ 95 (284)
..|..+++.+.+|+||| +|.+-.+.
T Consensus 19 ~~gs~~li~g~p~~~~~-~l~~qfl~ 43 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGK-DILFYILS 43 (260)
T ss_dssp TTCEEEEEECSGGGCHH-HHHHHHHH
T ss_pred CCCcEEEEEeCCCccHH-HHHHHHHH
Confidence 45778888878888888 66554443
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.30 E-value=12 Score=31.03 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.2
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
-+++.+++|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 420
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=39.28 E-value=21 Score=39.35 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=19.1
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHH
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~ 96 (284)
..|.-+++.+++|+|||. |++-++..
T Consensus 730 ~~G~lVlI~G~PG~GKTt-Lal~lA~~ 755 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTT-LTLQVIAA 755 (1706)
T ss_dssp ETTSEEEEECSTTSSHHH-HHHHHHHH
T ss_pred CCCceEEEECCCCCCcHH-HHHHHHHH
Confidence 457789999999999994 44444443
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=38.96 E-value=13 Score=32.17 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.7
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+++.+++|||||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999853
No 422
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=38.93 E-value=20 Score=29.21 Aligned_cols=15 Identities=27% Similarity=0.003 Sum_probs=12.8
Q ss_pred CCcEEEEccCCCCch
Q 042526 72 RKDVIGAAETESGKT 86 (284)
Q Consensus 72 G~dviv~A~TGSGKT 86 (284)
-.-+++.+.+|+|||
T Consensus 38 ~~~i~ivG~~gvGKT 52 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKT 52 (226)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CeEEEEEcCCCCCHH
Confidence 356888899999999
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.82 E-value=13 Score=33.82 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
|.-+.+.+++|||||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 556788999999999654
No 424
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.74 E-value=14 Score=37.54 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
..+++.+|||+|||..
T Consensus 589 ~~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEEBSCSSSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3689999999999954
No 425
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=38.73 E-value=85 Score=27.46 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=30.1
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
+-++||.|+|++-+..++..+... ++.+..++|+....+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGE 66 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHH
Confidence 346999999999999888887653 677888888754443
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=38.26 E-value=30 Score=32.23 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchHHh
Q 042526 73 KDVIGAAETESGKTRAF 89 (284)
Q Consensus 73 ~dviv~A~TGSGKTlaf 89 (284)
+.+++.+++|+|||...
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999543
No 427
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=37.95 E-value=17 Score=32.85 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+|+|+|||.
T Consensus 121 ~~gsviLI~GpPGsGKTt 138 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTP 138 (331)
T ss_dssp EESEEEEEECSCSSSHHH
T ss_pred CCCcEEEEEcCCCCCHHH
Confidence 456778999999999994
No 428
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=37.85 E-value=14 Score=31.56 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=12.8
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.-+.+.+|+|||||.-
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4567889999999943
No 429
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=37.85 E-value=14 Score=31.57 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=14.3
Q ss_pred cEEEEccCCCCchHHhH
Q 042526 74 DVIGAAETESGKTRAFG 90 (284)
Q Consensus 74 dviv~A~TGSGKTlafl 90 (284)
++++.++.|+|||.+.+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999996543
No 430
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=37.63 E-value=39 Score=31.27 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=36.5
Q ss_pred EEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-CCccccc
Q 042526 125 RALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-PNKRKRT 179 (284)
Q Consensus 125 ~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-~~i~v~~ 179 (284)
++||+|||+.-|.+++..+... ++.+..+.|.........++.+ ..+++.|
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT 241 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT 241 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC
Confidence 6999999999999999888754 6777788887554444444444 4455554
No 431
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=37.63 E-value=17 Score=32.53 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.0
Q ss_pred CCcEEE--EccCCCCchHH
Q 042526 72 RKDVIG--AAETESGKTRA 88 (284)
Q Consensus 72 G~dviv--~A~TGSGKTla 88 (284)
+..+++ .+++|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 457888 99999999953
No 432
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=37.57 E-value=10 Score=30.02 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.9
Q ss_pred CcEEEEccCCCCch
Q 042526 73 KDVIGAAETESGKT 86 (284)
Q Consensus 73 ~dviv~A~TGSGKT 86 (284)
..|++.+.+|+|||
T Consensus 21 ~ki~v~G~~~~GKS 34 (189)
T 1z06_A 21 FKIIVIGDSNVGKT 34 (189)
T ss_dssp EEEEEECCTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 47999999999999
No 433
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=37.31 E-value=76 Score=31.10 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=52.9
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----HhcC-CCccccc---ccCCccccccccCCC
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRRK-PNKRKRT---RKGGEDEKLDSLKWN 194 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~~-~~i~v~~---~~~~~~d~l~~lv~d 194 (284)
+-++||+|+|+..|..++..+... ++.+..+.|+....+... ++.+ .++++.+ ..+.++..+..++.-
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEET
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEe
Confidence 458999999999999998888764 677777777654433322 3333 4555543 233444455555544
Q ss_pred CCCccccccccc---chhhhcccCCCC
Q 042526 195 PLSQPKTTTLLP---SSLALMNLTEGK 218 (284)
Q Consensus 195 EAd~m~~~gflp---~~~~~~~~~~r~ 218 (284)
++|. +||.. +.++.+++.-|.
T Consensus 521 d~d~---~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 521 DADK---EGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp TTTC---CTTTTSHHHHHHHHHTTTTS
T ss_pred Cccc---ccCCCCHHHHHHHhCcccCC
Confidence 4433 23422 235666666665
No 434
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=37.30 E-value=15 Score=32.34 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4588889999999999944
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=37.02 E-value=7.7 Score=31.38 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=11.9
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+.+.+++|||||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356788999999843
No 436
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=36.96 E-value=15 Score=32.68 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
++-+++.+++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445778999999999543
No 437
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=36.43 E-value=45 Score=26.84 Aligned_cols=67 Identities=10% Similarity=-0.076 Sum_probs=20.9
Q ss_pred cCCCcEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHHHHHHHHHHhhh
Q 042526 70 HQRKDVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTRELALQVLMVASPS 146 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReLa~Qi~~~~~~l 146 (284)
+.|-.+-+.+..|-|-|+.+.+|+...-..... ..........+.++||+-........+...+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~----------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQET----------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccc----------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 456788899999999999999997543221110 0111222335568899988888887777777655
No 438
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=36.31 E-value=18 Score=31.33 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
. |.-+.+.+|+|||||.-+
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHH
T ss_pred C-CEEEEEECCCCCCHHHHH
Confidence 5 777889999999999543
No 439
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=36.11 E-value=14 Score=32.77 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=14.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.=+.+.+++|||||..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp CCCEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCchHHHH
Confidence 3456678899999999843
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.09 E-value=16 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|+-+++.+|+|||||.
T Consensus 167 ~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp TTCCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457889999999999984
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=36.02 E-value=17 Score=30.24 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
..|.-+.+.+++|||||...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 45667899999999999543
No 442
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=35.87 E-value=25 Score=30.84 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.9
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.=+.+.+++|||||..
T Consensus 79 ~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCEEEEEEECTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455677889999999943
No 443
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.83 E-value=15 Score=32.47 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=12.0
Q ss_pred EEEEccCCCCchHH
Q 042526 75 VIGAAETESGKTRA 88 (284)
Q Consensus 75 viv~A~TGSGKTla 88 (284)
+++.+++|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57899999999954
No 444
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.52 E-value=17 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCCchHH
Q 042526 71 QRKDVIGAAETESGKTRA 88 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTla 88 (284)
.|.-+.+.+|+|+|||..
T Consensus 128 ~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999954
No 445
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=35.32 E-value=11 Score=33.50 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 5588899999999999943
No 446
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=35.14 E-value=18 Score=32.49 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.2
Q ss_pred cccC-CCCHHHHHHHHHcCCCC
Q 042526 36 WNEL-RLHPLLMKSIYKLGFKE 56 (284)
Q Consensus 36 F~~l-~L~~~Ll~~L~~~g~~~ 56 (284)
..+| |+++.+++.|.+.||.+
T Consensus 37 l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 37 IEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp SSCCTTCCHHHHHHHHTTTCCS
T ss_pred HHHcCCCCHHHHHHHHHcCCCc
Confidence 3444 68999999999988873
No 447
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=35.09 E-value=37 Score=35.40 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHc--CCCcEEEEccCCCCchHHhH
Q 042526 60 ILKARIPALAH--QRKDVIGAAETESGKTRAFG 90 (284)
Q Consensus 60 iQ~~aip~il~--~G~dviv~A~TGSGKTlafl 90 (284)
+=..|+..++. ....||+.+.+|+|||.+.=
T Consensus 158 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 190 (1010)
T 1g8x_A 158 ISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (1010)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHH
Confidence 33444444422 34579999999999997743
No 448
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.09 E-value=16 Score=32.14 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=12.5
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.=+.+.+++|||||..
T Consensus 32 ~ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467889999999843
No 449
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=34.87 E-value=23 Score=27.67 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=12.7
Q ss_pred CcEEEEccCCCCch
Q 042526 73 KDVIGAAETESGKT 86 (284)
Q Consensus 73 ~dviv~A~TGSGKT 86 (284)
-.|++.+.+|+|||
T Consensus 22 ~ki~vvG~~~~GKS 35 (190)
T 3con_A 22 YKLVVVGAGGVGKS 35 (190)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 37899999999999
No 450
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=34.84 E-value=15 Score=31.82 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=12.0
Q ss_pred cEEEEccCCCCchH
Q 042526 74 DVIGAAETESGKTR 87 (284)
Q Consensus 74 dviv~A~TGSGKTl 87 (284)
.+.+.+|+|+|||.
T Consensus 4 ~v~lvG~nGaGKST 17 (270)
T 3sop_A 4 NIMVVGQSGLGKST 17 (270)
T ss_dssp EEEEEESSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47789999999993
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=34.77 E-value=16 Score=30.43 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=14.8
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+++|||||.
T Consensus 18 ~~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCCEEEEEECSTTSCHHH
T ss_pred CCceEEEEECCCCCCHHH
Confidence 346678899999999995
No 452
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=34.76 E-value=38 Score=31.46 Aligned_cols=52 Identities=6% Similarity=-0.063 Sum_probs=36.8
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHHHhcC-CCccccc
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHSNRRK-PNKRKRT 179 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~l~~~-~~i~v~~ 179 (284)
-++||+|||+.-|..++..++.. ++.+..+.|.........++.+ ..+++.+
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 46999999999999999988765 6778888886444444444443 3445554
No 453
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=34.53 E-value=36 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.072 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCCchHHhHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPAL 94 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil 94 (284)
.-.|++...+|.|||.+.+--++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal 50 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA 50 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999977654333
No 454
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=34.40 E-value=16 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.6
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|+|||.
T Consensus 24 ~~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp SCSEEEEEEECTTSSHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 567789999999999994
No 455
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=34.11 E-value=56 Score=28.15 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=31.5
Q ss_pred CCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 122 GHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 122 ~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
.+.++||+|+|++-|..++..++.. ++.+..+.|+....+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 276 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQ 276 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHH
Confidence 4557899999999999999988765 677888888754443
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=34.03 E-value=25 Score=27.43 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=12.1
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.|++.+++|+|||
T Consensus 9 ki~v~G~~~~GKS 21 (208)
T 3clv_A 9 KTVLLGESSVGKS 21 (208)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=33.96 E-value=16 Score=30.76 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-|.+.+++|||||..
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999953
No 458
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=33.90 E-value=15 Score=30.80 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=15.5
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+++.+++|||||.
T Consensus 24 ~~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCCEEEEEECCTTSCHHH
T ss_pred CCCeEEEEEcCCCCCHHH
Confidence 357889999999999984
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=33.89 E-value=17 Score=29.03 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=12.3
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+.+.+++|||||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999843
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=33.44 E-value=25 Score=34.02 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHcCCCCCc----H----HHHHHHH-HHHcCCCcEEEEccCCCCchH
Q 042526 39 LRLHPLLMKSIYKLGFKEST----S----ILKARIP-ALAHQRKDVIGAAETESGKTR 87 (284)
Q Consensus 39 l~L~~~Ll~~L~~~g~~~pT----~----iQ~~aip-~il~~G~dviv~A~TGSGKTl 87 (284)
.+++..-++.+-..|-..|. + +.+...+ .+ ..|.-+++.+++|||||.
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~-~~G~iI~LiG~sGSGKST 384 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRE-RQGFTVFFTGLSGAGKST 384 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGG-GSCEEEEEEESSCHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhccccc-ccceEEEEECCCCChHHH
Confidence 46777666666555654431 2 2222222 23 678899999999999983
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=32.92 E-value=17 Score=27.45 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=11.9
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.+++.+++|+|||
T Consensus 3 ki~v~G~~~~GKS 15 (161)
T 2dyk_A 3 KVVIVGRPNVGKS 15 (161)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 462
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.58 E-value=1.5e+02 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 122 GHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 122 ~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
.+.++||+|+|+.-|..++..+..... .++.+..+.|+....+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNK 380 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHH
Confidence 355899999999999999999987643 3677888888755444
No 463
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=32.23 E-value=25 Score=35.08 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=32.7
Q ss_pred ccCcccCCC-CHHHHHHHHHcCCC----CCcHHHHHHHHHHHcC--CCcEEEEccCCCCchHHh
Q 042526 33 FDAWNELRL-HPLLMKSIYKLGFK----ESTSILKARIPALAHQ--RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 33 ~~~F~~l~L-~~~Ll~~L~~~g~~----~pT~iQ~~aip~il~~--G~dviv~A~TGSGKTlaf 89 (284)
+..|..+++ .+..+..-...... +.+.+=..|+..++.. .+.||+.+.+|+|||.+.
T Consensus 48 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp ECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred EcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 344555554 35555444322111 2244555566555333 457999999999999774
No 464
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.21 E-value=19 Score=31.76 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.5
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-.++.++||+|||..
T Consensus 26 ~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 26 VTAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEEECCTTTCSTHH
T ss_pred cEEEECCCCCcHHHH
Confidence 567889999999943
No 465
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=32.13 E-value=18 Score=32.89 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 5688889999999999943
No 466
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.12 E-value=18 Score=33.05 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCCchH
Q 042526 70 HQRKDVIGAAETESGKTR 87 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTl 87 (284)
..|.-+.+.+|+|||||.
T Consensus 28 ~~Ge~~~llGpsGsGKST 45 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTT 45 (359)
T ss_dssp CTTCEEEEEESTTSSHHH
T ss_pred cCCCEEEEECCCCchHHH
Confidence 457778899999999984
No 467
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=31.94 E-value=1e+02 Score=30.17 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=51.0
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchHHHH----HhcC-CCccccc---ccCCccccccccCCC
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTSEHS----NRRK-PNKRKRT---RKGGEDEKLDSLKWN 194 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q~~~----l~~~-~~i~v~~---~~~~~~d~l~~lv~d 194 (284)
+-++||+|+|+..|..+...+... ++.+..+.|+....+... ++.+ .++++.+ ..+.++..+..++.-
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEET
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEe
Confidence 458999999999999999888764 677777777654333222 3333 4455543 233344445444443
Q ss_pred CCCccccccccc---chhhhcccCCCC
Q 042526 195 PLSQPKTTTLLP---SSLALMNLTEGK 218 (284)
Q Consensus 195 EAd~m~~~gflp---~~~~~~~~~~r~ 218 (284)
++|. +||.. ..++.+++.-|.
T Consensus 515 d~d~---~G~p~s~~~~iQr~GRagR~ 538 (664)
T 1c4o_A 515 DADK---EGFLRSERSLIQTIGRAARN 538 (664)
T ss_dssp TTTS---CSGGGSHHHHHHHHGGGTTS
T ss_pred CCcc---cCCCCCHHHHHHHHCccCcC
Confidence 3332 23322 235555655554
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=31.77 E-value=19 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=12.7
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.-+.+.+..|||||..
T Consensus 13 ~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567889999999844
No 469
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=31.68 E-value=18 Score=31.36 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-|.+.+++|||||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999854
No 470
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=31.66 E-value=20 Score=34.31 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
|.-+.+.+++|||||...
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 556788999999999544
No 471
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=31.54 E-value=19 Score=32.80 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEEcCCCchHHHH
Confidence 4577788999999999943
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=31.53 E-value=17 Score=27.22 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=12.0
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.+++.+++|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (166)
T 2ce2_X 5 KLVVVGAGGVGKS 17 (166)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 473
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=31.53 E-value=19 Score=32.84 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCchHHHH
Confidence 4577788999999999943
No 474
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=31.37 E-value=22 Score=28.86 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
+.-+.+.+++|||||..
T Consensus 3 ~~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 3 AINIALDGPAAAGKSTI 19 (219)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999954
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=31.34 E-value=19 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.1
Q ss_pred CcEEEEccCCCCchHH
Q 042526 73 KDVIGAAETESGKTRA 88 (284)
Q Consensus 73 ~dviv~A~TGSGKTla 88 (284)
.=|++++++|||||..
T Consensus 259 ~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTF 274 (416)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578899999999943
No 476
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=31.27 E-value=18 Score=27.36 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=12.0
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.+++.+++|+|||
T Consensus 7 ~i~v~G~~~~GKs 19 (168)
T 1z2a_A 7 KMVVVGNGAVGKS 19 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5789999999999
No 477
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=31.18 E-value=36 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=14.5
Q ss_pred CCCcEEEEccCCCCchHHh
Q 042526 71 QRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 71 ~G~dviv~A~TGSGKTlaf 89 (284)
.|+=.++.++-|||||.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~l 36 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTEL 36 (234)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 4666677888899999554
No 478
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=31.10 E-value=20 Score=32.14 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=12.2
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
=+.+.+++|||||..
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999944
No 479
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.04 E-value=96 Score=27.52 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=28.2
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeC
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAG 159 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G 159 (284)
+.++||+|+++..+..++..+... ++.+..+.|
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g 393 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVG 393 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECC
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEec
Confidence 557999999999999999988865 677888887
No 480
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=31.04 E-value=26 Score=36.70 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCchHHhHHHHHHHHH
Q 042526 72 RKDVIGAAETESGKTRAFGLPALQRLL 98 (284)
Q Consensus 72 G~dviv~A~TGSGKTlafllPil~~l~ 98 (284)
.+.||+.+.+|+|||.+.=+ +++++.
T Consensus 144 nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 144 SQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 45799999999999977543 344443
No 481
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=30.69 E-value=80 Score=27.92 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=31.8
Q ss_pred CCeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 122 GHLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 122 ~~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
.+.++||+|+|++.|..++..+... ++.+..+.|+....+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 314 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRD 314 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHH
Confidence 4567999999999999999888764 677888888755443
No 482
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=30.61 E-value=20 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTT 45 (372)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCcHHHHH
Confidence 4677888999999999954
No 483
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=30.24 E-value=21 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.051 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchHH
Q 042526 74 DVIGAAETESGKTRA 88 (284)
Q Consensus 74 dviv~A~TGSGKTla 88 (284)
-+++.+|+|+|||..
T Consensus 28 ~~~i~G~nG~GKttl 42 (359)
T 2o5v_A 28 VTGIYGENGAGKTNL 42 (359)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCChhHH
Confidence 567899999999954
No 484
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=29.98 E-value=21 Score=32.69 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTL 53 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTT 53 (372)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 5577888999999999943
No 485
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=29.90 E-value=1.5e+02 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=30.4
Q ss_pred eEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 124 LRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 124 ~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
.++||+|+|+..|..++..+... ++.+..+.|+....+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKE 314 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHH
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHH
Confidence 47999999999999999888764 677888888855444
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=29.80 E-value=23 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=11.8
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
-+++.+++|+|||
T Consensus 7 kv~lvG~~g~GKS 19 (199)
T 2f9l_A 7 KVVLIGDSGVGKS 19 (199)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4788999999999
No 487
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=29.79 E-value=83 Score=27.48 Aligned_cols=39 Identities=3% Similarity=-0.037 Sum_probs=30.7
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
+.++||+|+|++.|..++..+... ++.+..+.|+....+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 288 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEE 288 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHH
Confidence 457999999999999999888764 677778888754433
No 488
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=29.79 E-value=23 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCCchHH
Q 042526 70 HQRKDVIGAAETESGKTRA 88 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTla 88 (284)
..|.-+.+.+|+|||||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 5688899999999999954
No 489
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=29.65 E-value=31 Score=27.58 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.7
Q ss_pred CcEEEEccCCCCch
Q 042526 73 KDVIGAAETESGKT 86 (284)
Q Consensus 73 ~dviv~A~TGSGKT 86 (284)
..|++.+.+|+|||
T Consensus 8 ~ki~vvG~~~~GKT 21 (214)
T 2fh5_B 8 RAVLFVGLCDSGKT 21 (214)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46899999999999
No 490
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=29.63 E-value=36 Score=30.91 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCCchHHh
Q 042526 70 HQRKDVIGAAETESGKTRAF 89 (284)
Q Consensus 70 ~~G~dviv~A~TGSGKTlaf 89 (284)
....+|++.+++|+|||+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 45678999999999999654
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=29.43 E-value=23 Score=31.53 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCCchHHh
Q 042526 72 RKDVIGAAETESGKTRAF 89 (284)
Q Consensus 72 G~dviv~A~TGSGKTlaf 89 (284)
++-+++.+++|+|||...
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999543
No 492
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=29.19 E-value=21 Score=27.45 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=12.2
Q ss_pred cEEEEccCCCCch
Q 042526 74 DVIGAAETESGKT 86 (284)
Q Consensus 74 dviv~A~TGSGKT 86 (284)
.|++.+++|+|||
T Consensus 10 ~i~v~G~~~~GKS 22 (182)
T 1ky3_A 10 KVIILGDSGVGKT 22 (182)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 493
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=29.19 E-value=59 Score=26.94 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHcCCC-cEEEEccCCCCchHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCeEEEEEecCHHH
Q 042526 57 STSILKARIPALAHQRK-DVIGAAETESGKTRAFGLPALQRLLEEREKAAKMLEEKGEEAEKYAPKGHLRALIINPTREL 135 (284)
Q Consensus 57 pT~iQ~~aip~il~~G~-dviv~A~TGSGKTlafllPil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLIL~PTReL 135 (284)
.++-|..++..++.+.+ =.++.++-||++|-..+--++.. .+. .|.++.||+||..-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~~---------------------~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-ARE---------------------QGREVQIIAADRRS 92 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HHH---------------------TTCCEEEECSTTHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HHh---------------------cCeEEEEEcCchHH
Confidence 45789999998844443 45667888999998865444332 221 47789999999887
Q ss_pred HHHHHHH
Q 042526 136 ALQVLMV 142 (284)
Q Consensus 136 a~Qi~~~ 142 (284)
+......
T Consensus 93 ~~~l~~~ 99 (189)
T 2l8b_A 93 QMNMKQD 99 (189)
T ss_dssp HHHHSCT
T ss_pred HHHHHhh
Confidence 6654443
No 494
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=29.11 E-value=23 Score=30.15 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCCchHH
Q 042526 72 RKDVIGAAETESGKTRA 88 (284)
Q Consensus 72 G~dviv~A~TGSGKTla 88 (284)
..-+.+.+|+|||||..
T Consensus 9 ~~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44688999999999843
No 495
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=29.09 E-value=79 Score=27.84 Aligned_cols=39 Identities=5% Similarity=-0.103 Sum_probs=30.7
Q ss_pred CeEEEEEecCHHHHHHHHHHHhhhhcCCCceeEEEeCCCcchH
Q 042526 123 HLRALIINPTRELALQVLMVASPSLKSNSLTLAMAAGSPLLTS 165 (284)
Q Consensus 123 ~~~aLIL~PTReLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~q 165 (284)
..++||+|+|++-|..++..+... ++.+..+.|+....+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 296 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQE 296 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHH
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHH
Confidence 347999999999999999988765 567778888754433
No 496
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=29.01 E-value=21 Score=27.05 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
|++.+++|+|||
T Consensus 9 i~v~G~~~~GKS 20 (170)
T 1z0j_A 9 VCLLGDTGVGKS 20 (170)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
No 497
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=28.92 E-value=21 Score=26.80 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEEEccCCCCch
Q 042526 75 VIGAAETESGKT 86 (284)
Q Consensus 75 viv~A~TGSGKT 86 (284)
|++.+++|+|||
T Consensus 6 i~v~G~~~~GKS 17 (167)
T 1kao_A 6 VVVLGSGGVGKS 17 (167)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
No 498
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.90 E-value=37 Score=35.90 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccCcccCC-CCHHHHHHHHHcCCCCCcH----HHHHHHHHHHcCCCc--EEEEccCCCCchHH
Q 042526 33 FDAWNELR-LHPLLMKSIYKLGFKESTS----ILKARIPALAHQRKD--VIGAAETESGKTRA 88 (284)
Q Consensus 33 ~~~F~~l~-L~~~Ll~~L~~~g~~~pT~----iQ~~aip~il~~G~d--viv~A~TGSGKTla 88 (284)
+..|..++ ..+.++..........+-| |=..|+..++..++| ||+.+.+|+|||.+
T Consensus 123 vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp ECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred eCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHH
No 499
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=28.82 E-value=30 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHcCCCc--EEEEccCCCCchHH
Q 042526 56 ESTSILKARIPALAHQRKD--VIGAAETESGKTRA 88 (284)
Q Consensus 56 ~pT~iQ~~aip~il~~G~d--viv~A~TGSGKTla 88 (284)
+.+.+=..|+..++..++| ||+.+.+|+|||.+
T Consensus 122 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 122 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceeh
No 500
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=28.73 E-value=35 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEEEccCCCCchHHhHHHHHHH
Q 042526 75 VIGAAETESGKTRAFGLPALQR 96 (284)
Q Consensus 75 viv~A~TGSGKTlafllPil~~ 96 (284)
|++.+++|+||| +++--++..
T Consensus 26 i~v~G~~~~GKS-sli~~l~~~ 46 (191)
T 3dz8_A 26 LLIIGNSSVGKT-SFLFRYADD 46 (191)
T ss_dssp EEEEESTTSSHH-HHHHHHHHH
T ss_pred EEEECCCCcCHH-HHHHHHhcC
Done!