Query 042529
Match_columns 456
No_of_seqs 340 out of 1492
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 2.7E-81 5.9E-86 638.6 39.8 377 42-418 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 2.8E-54 6E-59 455.4 20.6 396 31-427 72-597 (625)
3 PF04632 FUSC: Fusaric acid re 100.0 7.5E-27 1.6E-31 256.1 35.8 238 51-314 1-239 (650)
4 TIGR01667 YCCS_YHJK integral m 100.0 2.9E-26 6.4E-31 250.6 39.1 285 34-349 365-649 (701)
5 TIGR01666 YCCS hypothetical me 100.0 4E-26 8.7E-31 248.9 39.2 308 34-379 363-671 (704)
6 PRK10631 p-hydroxybenzoic acid 99.9 1.1E-25 2.4E-30 242.3 31.3 219 45-283 2-230 (652)
7 PRK11427 multidrug efflux syst 99.9 1.5E-20 3.2E-25 201.8 33.0 223 41-280 340-564 (683)
8 COG1289 Predicted membrane pro 99.8 1.7E-16 3.6E-21 175.1 29.3 187 41-243 344-531 (674)
9 COG4129 Predicted membrane pro 99.8 9.3E-16 2E-20 153.6 29.3 161 53-236 11-171 (332)
10 PRK11427 multidrug efflux syst 99.7 2.4E-15 5.2E-20 161.9 31.8 171 47-235 25-202 (683)
11 PF13515 FUSC_2: Fusaric acid 99.6 5.5E-15 1.2E-19 128.6 13.6 117 76-206 9-128 (128)
12 PF06081 DUF939: Bacterial pro 99.6 1.8E-14 4E-19 128.2 16.0 136 54-210 6-141 (141)
13 COG1289 Predicted membrane pro 99.6 2.1E-12 4.5E-17 142.7 30.8 216 47-283 6-225 (674)
14 PF10334 DUF2421: Protein of u 99.4 1.3E-10 2.8E-15 111.8 22.0 206 210-421 1-228 (229)
15 PF04632 FUSC: Fusaric acid re 99.3 8.8E-09 1.9E-13 113.5 34.8 178 47-235 335-514 (650)
16 PF10337 DUF2422: Protein of u 99.3 3.6E-08 7.7E-13 104.4 36.9 263 41-311 5-313 (459)
17 PF12805 FUSC-like: FUSC-like 99.1 3.7E-07 8E-12 90.7 29.7 242 109-378 3-253 (284)
18 TIGR01666 YCCS hypothetical me 99.0 3.1E-06 6.8E-11 93.5 36.1 295 50-378 6-309 (704)
19 TIGR01667 YCCS_YHJK integral m 98.9 1.6E-06 3.4E-11 96.1 32.0 292 50-378 6-309 (701)
20 PRK10631 p-hydroxybenzoic acid 98.0 0.014 3.1E-07 64.2 30.3 158 52-225 353-516 (652)
21 PF11168 DUF2955: Protein of u 97.0 0.029 6.3E-07 49.8 14.2 137 55-209 2-139 (140)
22 TIGR02865 spore_II_E stage II 83.9 85 0.0018 35.8 24.5 120 106-241 190-330 (764)
23 PF12732 YtxH: YtxH-like prote 81.0 5.2 0.00011 31.2 5.9 44 194-238 3-46 (74)
24 PF06496 DUF1097: Protein of u 78.2 49 0.0011 29.3 15.4 70 81-152 20-89 (144)
25 COG5336 Uncharacterized protei 74.4 14 0.00031 31.2 6.7 33 100-137 45-77 (116)
26 PF06081 DUF939: Bacterial pro 73.8 13 0.00028 32.8 7.0 46 76-122 93-138 (141)
27 PF10011 DUF2254: Predicted me 71.3 67 0.0015 33.2 12.6 42 161-205 96-137 (371)
28 COG4980 GvpP Gas vesicle prote 63.8 21 0.00046 30.6 5.8 42 193-235 8-49 (115)
29 PRK12821 aspartyl/glutamyl-tRN 59.7 1.9E+02 0.004 30.8 12.9 59 94-154 94-154 (477)
30 PRK11677 hypothetical protein; 55.1 32 0.00069 30.3 5.6 45 194-238 8-53 (134)
31 PRK11715 inner membrane protei 52.6 85 0.0018 33.3 9.3 50 58-108 337-386 (436)
32 PF06123 CreD: Inner membrane 51.9 96 0.0021 32.8 9.6 64 58-122 331-396 (430)
33 PRK09400 secE preprotein trans 51.5 82 0.0018 23.8 6.6 47 26-72 6-53 (61)
34 TIGR02135 phoU_full phosphate 51.0 1.9E+02 0.0042 26.2 12.1 124 294-423 82-205 (212)
35 COG5547 Small integral membran 49.1 72 0.0016 23.8 5.7 24 101-124 4-27 (62)
36 COG2211 MelB Na+/melibiose sym 45.6 3.5E+02 0.0075 29.0 12.7 37 95-131 142-179 (467)
37 PF05478 Prominin: Prominin; 43.3 5.7E+02 0.012 29.4 23.3 41 195-237 152-192 (806)
38 PF13515 FUSC_2: Fusaric acid 42.9 53 0.0011 27.6 5.1 32 181-213 28-59 (128)
39 TIGR00796 livcs branched-chain 41.2 4.3E+02 0.0093 27.4 16.8 77 40-124 202-280 (378)
40 PF04982 HPP: HPP family; Int 41.0 2.3E+02 0.005 24.2 12.2 56 84-146 6-61 (120)
41 PF12841 YvrJ: YvrJ protein fa 40.4 75 0.0016 21.7 4.4 27 393-419 10-36 (38)
42 PF13295 DUF4077: Domain of un 39.7 1.8E+02 0.0039 25.0 7.6 63 156-220 70-144 (175)
43 PF04286 DUF445: Protein of un 39.1 25 0.00054 35.5 2.9 20 105-124 344-363 (367)
44 PRK09823 putative inner membra 38.1 2.9E+02 0.0062 24.5 9.9 93 104-211 12-105 (160)
45 TIGR00930 2a30 K-Cl cotranspor 37.5 6.6E+02 0.014 29.6 14.3 28 94-122 139-166 (953)
46 PF15397 DUF4618: Domain of un 35.1 4.5E+02 0.0097 25.9 11.7 46 405-455 207-258 (258)
47 PF03419 Peptidase_U4: Sporula 34.9 1.2E+02 0.0027 30.1 7.0 15 108-122 37-51 (293)
48 TIGR03480 HpnN hopanoid biosyn 34.7 3E+02 0.0064 31.8 11.0 20 194-213 835-854 (862)
49 PF06295 DUF1043: Protein of u 34.6 1.1E+02 0.0023 26.6 5.8 40 194-233 4-44 (128)
50 PF11744 ALMT: Aluminium activ 34.5 1.5E+02 0.0033 31.1 7.8 40 168-209 44-83 (406)
51 COG4956 Integral membrane prot 33.0 4.7E+02 0.01 26.6 10.4 28 103-130 3-31 (356)
52 PF15225 IL32: Interleukin 32 32.8 67 0.0014 26.1 3.7 41 3-43 25-67 (104)
53 TIGR00327 secE_euk_arch protei 31.8 2.3E+02 0.0049 21.5 6.3 45 28-72 4-49 (61)
54 KOG3498 Preprotein translocase 31.6 2.4E+02 0.0052 21.6 6.3 49 25-73 6-55 (67)
55 PRK09776 putative diguanylate 31.3 8E+02 0.017 28.7 14.1 12 108-119 75-86 (1092)
56 PF04018 DUF368: Domain of unk 30.0 5.4E+02 0.012 25.2 13.9 37 88-124 92-129 (257)
57 PF09877 DUF2104: Predicted me 28.0 3.6E+02 0.0077 22.5 7.8 16 194-209 82-97 (99)
58 PF05525 Branch_AA_trans: Bran 27.8 7.5E+02 0.016 26.2 13.6 81 38-125 206-287 (427)
59 PF10112 Halogen_Hydrol: 5-bro 26.7 1.9E+02 0.0041 26.9 6.4 17 106-122 6-22 (199)
60 PRK11660 putative transporter; 26.0 4.4E+02 0.0096 28.8 10.1 19 193-211 423-441 (568)
61 PF08893 DUF1839: Domain of un 25.2 2.4E+02 0.0051 28.5 6.9 74 300-378 240-317 (319)
62 COG5438 Predicted multitransme 24.7 2.5E+02 0.0055 29.1 7.1 46 81-126 177-226 (385)
63 smart00793 AgrB Accessory gene 24.6 3.4E+02 0.0074 24.9 7.6 59 49-108 21-79 (184)
64 PF10779 XhlA: Haemolysin XhlA 24.6 78 0.0017 24.4 2.8 18 107-124 52-69 (71)
65 PF07155 ECF-ribofla_trS: ECF- 24.5 5E+02 0.011 23.0 10.4 20 108-127 48-67 (169)
66 PRK11103 PTS system mannose-sp 24.3 4.7E+02 0.01 26.1 8.9 30 184-214 186-215 (282)
67 TIGR00828 EIID-AGA PTS system, 23.9 5E+02 0.011 25.7 9.0 30 184-214 176-205 (271)
68 COG4452 CreD Inner membrane pr 23.9 4.2E+02 0.0091 27.6 8.4 32 93-124 365-396 (443)
69 PF10337 DUF2422: Protein of u 23.7 8.8E+02 0.019 25.6 12.6 32 93-124 54-85 (459)
70 PF12805 FUSC-like: FUSC-like 23.7 7E+02 0.015 24.4 19.1 20 299-318 214-233 (284)
71 PRK10490 sensor protein KdpD; 23.4 3.8E+02 0.0083 31.1 9.4 13 442-454 809-821 (895)
72 COG4980 GvpP Gas vesicle prote 23.3 83 0.0018 27.0 2.9 17 108-124 8-24 (115)
73 PF10031 DUF2273: Small integr 22.7 3.1E+02 0.0066 19.9 6.1 20 105-124 8-27 (51)
74 COG4393 Predicted membrane pro 22.7 8.4E+02 0.018 25.0 10.2 43 186-230 116-158 (405)
75 PRK01100 putative accessory ge 22.7 5.5E+02 0.012 24.2 8.8 57 51-108 35-91 (210)
76 PF14351 DUF4401: Domain of un 22.5 7.9E+02 0.017 24.6 11.1 21 101-121 103-123 (326)
77 KOG1172 Na+-independent Cl/HCO 22.0 7.5E+02 0.016 28.6 10.7 40 167-206 450-489 (876)
78 TIGR02135 phoU_full phosphate 21.6 3.2E+02 0.007 24.7 7.0 29 397-425 78-106 (212)
79 PF13121 DUF3976: Domain of un 21.6 1.3E+02 0.0028 20.3 2.9 25 97-121 11-36 (41)
80 COG4239 ABC-type uncharacteriz 21.2 7.9E+02 0.017 24.6 9.5 64 51-128 135-199 (341)
81 COG2443 Sss1 Preprotein transl 21.2 3.9E+02 0.0084 20.5 6.5 48 25-72 6-54 (65)
82 PF03613 EIID-AGA: PTS system 21.0 8E+02 0.017 24.1 9.8 25 184-208 174-198 (264)
83 PF05313 Pox_P21: Poxvirus P21 20.6 4.8E+02 0.01 24.3 7.4 17 188-204 140-156 (189)
84 COG4035 Predicted membrane pro 20.5 1.1E+02 0.0024 25.1 2.9 38 77-124 63-104 (108)
85 COG0659 SUL1 Sulfate permease 20.3 6E+02 0.013 27.8 9.6 21 191-211 390-410 (554)
86 PRK11412 putative uracil/xanth 20.1 1E+03 0.023 25.1 13.8 25 186-210 189-213 (433)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=2.7e-81 Score=638.59 Aligned_cols=377 Identities=59% Similarity=0.957 Sum_probs=362.5
Q ss_pred HhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 042529 42 KKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGA 121 (456)
Q Consensus 42 ~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~ 121 (456)
|+++++||+|+.|++|+|+|++++++++|..+.|.+++.+++||++||++|++||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 042529 122 HHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGF 201 (456)
Q Consensus 122 ~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ 201 (456)
.+++...|++.+++++++++|+++++++|.+++|.+|+||+||+++|++||++|++++|.+++.+.+|..|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99998888878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCC------CcchhhHHhHHHHhhchhhHHHHHhHh
Q 042529 202 TAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDG------EMDMTFLEGYKCVLNSKQTEESLANFA 275 (456)
Q Consensus 202 ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~------~~~~~~~~~~~~~L~~~~~~~~l~~~a 275 (456)
++++||.+|||.|++++||+.++++++++++.+++|+++|++..+++ ..+++.+++||+++++++++|+|+++|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999876444 246789999999999999999999999
Q ss_pred ccCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 042529 276 GWEPGHGEFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDACINMSYEAVKALKELAFSIQTMTK 355 (456)
Q Consensus 276 ~~Ep~~~r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~sl~~~~~ 355 (456)
+|||+||+|+++|||++|.+++.++|||+|+++|||+|+++++|.|+++|+.++++|.+++.++.++|++|+.++++|++
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~ 320 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTK 320 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHhccc-----------------------cccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042529 356 PCSANSHITKSKIAAKNLKSLLSTSL-----------------------CKETEILDLIPAVTVASLLVDAVACTEKIAE 412 (456)
Q Consensus 356 ~~~~~~~~~~~~~a~~~L~~~l~~~~-----------------------~~~~~~~~~~~~~~~asllie~~~~le~l~~ 412 (456)
+++.+.++.++++|+++|+.++++++ +++.+..+.++++||+|+|+|+++|+|+++|
T Consensus 321 ~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~ 400 (406)
T PF11744_consen 321 SSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVE 400 (406)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98657779999999999999998766 6778999999999999999999999999999
Q ss_pred HHHHHH
Q 042529 413 SVQELA 418 (456)
Q Consensus 413 ~v~~L~ 418 (456)
+|+||+
T Consensus 401 ~v~eLa 406 (406)
T PF11744_consen 401 AVEELA 406 (406)
T ss_pred HHHhhC
Confidence 999995
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=2.8e-54 Score=455.38 Aligned_cols=396 Identities=44% Similarity=0.761 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHH
Q 042529 31 MSKLIELAKKTKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLA 110 (456)
Q Consensus 31 ~~~~~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~G 110 (456)
-.|++++.++.|+.+.+||+++.|++|+|+|++|++.+++..+.+.+++.++.||++|+++|+++++|+|+.|+++|.+|
T Consensus 72 ~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~ 151 (625)
T KOG4711|consen 72 SAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVG 151 (625)
T ss_pred HHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHH
Confidence 38999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 042529 111 TFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAH 190 (456)
Q Consensus 111 TliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~ 190 (456)
|+.++.+|+.+.+++..+|+..+++.++..+|+.++.++|.+++|.+|+ |+|+.++|++|++++.+++++.+++++.|.
T Consensus 152 tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~ 230 (625)
T KOG4711|consen 152 TLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLELAL 230 (625)
T ss_pred HhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHHHHH
Confidence 9999999999999999999767788889999999999999999999997 999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHh-------hchhhccCC--CCC--------Ccchh
Q 042529 191 MRVSTILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEG-------FGPLYFQIP--QDG--------EMDMT 253 (456)
Q Consensus 191 ~R~~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~-------~l~~~~~~~--~~~--------~~~~~ 253 (456)
.|+..|.+|..++++|+.|+||.|++++||+..+.+++.++.++++ +..+|+... +.. ...++
T Consensus 231 ~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~~~~ 310 (625)
T KOG4711|consen 231 QRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAAWYP 310 (625)
T ss_pred HHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcchhh
Confidence 9999999999999999999999999999999999999999999995 555555432 110 12567
Q ss_pred hHHhHHHHhhchhhHHHHHhHhccCCCCC-CcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 042529 254 FLEGYKCVLNSKQTEESLANFAGWEPGHG-EFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDAC 332 (456)
Q Consensus 254 ~~~~~~~~L~~~~~~~~l~~~a~~Ep~~~-r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~ 332 (456)
.+++|+++|+++..++++.++|.|||+|| .++++|||++|.+++.++|+|++++++||+|+.+++|+|.+++..++++|
T Consensus 311 ~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~~~l 390 (625)
T KOG4711|consen 311 LYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFRLTL 390 (625)
T ss_pred hhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Confidence 88899999999999999999999999999 67799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCC-CccchHHHHHHHHHHHHHhccc--------c---------------------
Q 042529 333 INMSYEAVKALKELAFSIQTMTKPCSA-NSHITKSKIAAKNLKSLLSTSL--------C--------------------- 382 (456)
Q Consensus 333 ~~l~~~~~~~L~~La~sl~~~~~~~~~-~~~~~~~~~a~~~L~~~l~~~~--------~--------------------- 382 (456)
.+++.++.++++.++.+++.|+++++. +.+....+.|.++|+..+.+.| |
T Consensus 391 ~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~~ 470 (625)
T KOG4711|consen 391 RRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEPNL 470 (625)
T ss_pred HHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccchhh
Confidence 999999999999999999999999853 6667778888899888764321 0
Q ss_pred --------------------------------------------------------------------------------
Q 042529 383 -------------------------------------------------------------------------------- 382 (456)
Q Consensus 383 -------------------------------------------------------------------------------- 382 (456)
T Consensus 471 ~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~~~~ 550 (625)
T KOG4711|consen 471 KGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILSRAT 550 (625)
T ss_pred cccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCccccccccccc
Confidence
Q ss_pred -ccchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q 042529 383 -KETEILDLIPAVTVAS-LLVDAVACTEKIAESVQELASIAKFKSVK 427 (456)
Q Consensus 383 -~~~~~~~~~~~~~~as-llie~~~~le~l~~~v~~L~~~~~F~~~~ 427 (456)
...+..+.+++++|+| ++++.+++++.++++++||+..++|++.+
T Consensus 551 ~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~ 597 (625)
T KOG4711|consen 551 SKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYD 597 (625)
T ss_pred cccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccc
Confidence 0012345678999999 99999999999999999999999999854
No 3
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.96 E-value=7.5e-27 Score=256.12 Aligned_cols=238 Identities=23% Similarity=0.300 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042529 51 RIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGK 130 (456)
Q Consensus 51 ~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~ 130 (456)
+++|++|+++|++++.++++ +.+++ +||||++||++|+||+.|+++.|+++|++||++|+++|+++..+.
T Consensus 1 ~~~~alr~~lA~~lAl~ia~----~l~l~-~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~----- 70 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAF----WLQLP-HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALF----- 70 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhCCC-CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 46899999999999655444 57887 999999999999999999999999999999999999999997663
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042529 131 LGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDD-EVWHMAHMRVSTILIGGFTAVCVCIL 209 (456)
Q Consensus 131 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~-~~~~~a~~R~~~i~iGi~ia~~v~~l 209 (456)
.++|++..+.+.+|++++.|...+. ...+.|+++++++|.++|.++...+| +.++++++|+.+|+||++|+.+|+.+
T Consensus 71 ~~~p~l~~~~lal~i~~c~~~~~~~--~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 71 PQSPLLFLLALALWIGLCLYLSLLD--RNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577776666666666555555421 33468999999999999999876665 57999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhHHHHhhchhhHHHHHhHhccCCCCCCcccCCc
Q 042529 210 IFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGYKCVLNSKQTEESLANFAGWEPGHGEFRFRHP 289 (456)
Q Consensus 210 i~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~l~~~a~~Ep~~~r~~~~~p 289 (456)
+||.+.++.+++.+.+.++...++++..++... +.. . ..++...+..+.+.+..++++|.+..+.+
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~----~~~--~----~~~~l~~~~~~l~~~~~~~~~e~~~~~~~---- 214 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALLDGDP----DPA--A----ERRRLARDIAALESLLSHARYESPRLRRR---- 214 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCc----ccc--h----HHHHHHHHHHHHHHHHhhccccCchhHHH----
Confidence 999999999999999999999999987664221 111 1 33444555667899999999998764422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042529 290 WKQYLKIGSLTRNCAYRIEALNGYL 314 (456)
Q Consensus 290 ~~~y~~i~~~lr~~~~~l~aL~~~~ 314 (456)
...+..+...+..+...+..++...
T Consensus 215 ~~~~~~l~~~~~~l~~~~~~l~~~~ 239 (650)
T PF04632_consen 215 RRRLRALQARLLRLLALLRSLARRL 239 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444433344444444444433
No 4
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.96 E-value=2.9e-26 Score=250.63 Aligned_cols=285 Identities=16% Similarity=0.200 Sum_probs=194.0
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHH
Q 042529 34 LIELAKKTKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFL 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTli 113 (456)
++.++.++....+.++..++||+|+++|++++.+++. +.+++ +|||+++|+++|+||+.|.|..|+++|++||++
T Consensus 365 ~~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~----~l~l~-~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~ 439 (701)
T TIGR01667 365 LKDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILM----GTALH-LGYWILLTTLFVCQPNYGATRLRLVQRIIGTVV 439 (701)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH----HhCCC-cchHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3567788888889999999999999999999765544 34666 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 042529 114 AAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRV 193 (456)
Q Consensus 114 G~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~ 193 (456)
|+++|+++.++. +.....+.+++ +.+++ .| .+ .+.+ |+..++++|..+++......++.++++..|+
T Consensus 440 G~llg~~l~~l~-----p~~~~~l~l~v-~~~~~-~~-~~---~~~~--Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl 506 (701)
T TIGR01667 440 GLVIGVALHFLI-----PSLEGQLTLMV-ITGVA-FF-AF---RSKN--YGWATVFITLLVLLCFNLLGLDGEQYILPRL 506 (701)
T ss_pred HHHHHHHHHHHc-----CcHHHHHHHHH-HHHHH-HH-HH---HHhh--HHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999987663 22222222221 11111 11 11 1224 5555566776555543333335568899999
Q ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhHHHHhhchhhHHHHHh
Q 042529 194 STILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGYKCVLNSKQTEESLAN 273 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~l~~ 273 (456)
.||+|||++|++++.++||.|.++++++.+.+.++...+|++.+++.|..++.+. .......|+.-++.++.++..+
T Consensus 507 ~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~---~~yr~aRr~a~~a~a~l~~~~~ 583 (701)
T TIGR01667 507 IDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDD---LAYRIARRNAHNTDAALSTTLS 583 (701)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876543221 1111122333334455666667
Q ss_pred HhccCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 274 FAGWEPGHGEFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDACINMSYEAVKALKELAFS 349 (456)
Q Consensus 274 ~a~~Ep~~~r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~s 349 (456)
....||++.+. .++....+....+.+...+.+|..+-. .. ..+++.+.+ .+.+..+.+.|..+...
T Consensus 584 ~m~~EP~~~~~----~~~~~~~ll~~~~~ll~~isal~a~r~-~~-~~~~~~~~~----~~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 584 NMMQEPAFNSH----YLEDGFRLLTLSHTLLSYISALGAHRE-RL-LNPELAAEL----LQACEIVAKAIQRCQAR 649 (701)
T ss_pred HHHhCCCCchh----hHHHHHHHHHHHHHHHHHHHHHHhccc-cc-CChhHHHHH----HHHHHHHHHHHHHHHHh
Confidence 77899998652 244333444445556666666653311 11 122333333 34445556667666666
No 5
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.96 E-value=4e-26 Score=248.86 Aligned_cols=308 Identities=17% Similarity=0.133 Sum_probs=205.7
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHH
Q 042529 34 LIELAKKTKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFL 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTli 113 (456)
.++.++++.+..+.|+..++||+|++++++++.+++. +++++ +|||+++|+++|+||+.|.|..|+.+|++||++
T Consensus 363 ~~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~----~l~l~-~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTll 437 (704)
T TIGR01666 363 LKNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQ----FFGFN-LGYWILLTTLFVCQPNYSATKVRLRQRIIGTLL 437 (704)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH----HhCCC-CCchHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999765543 35666 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 042529 114 AAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRV 193 (456)
Q Consensus 114 G~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~ 193 (456)
|+++|.++.++. +.....+.+ +.+.+. .|+.+. ..+|.++ ++.+|..+++...... +.++.+..|+
T Consensus 438 G~~lg~~ll~l~-----p~~~~~l~l-iv~~~~--l~~~~~---~~~Y~~a--~~fiT~~vll~~~l~g-~~~~~~~~Rl 503 (704)
T TIGR01666 438 GVVIGSPLLYFN-----PSLELQLVL-VVLTGV--LFFAFR---SNNYSFA--TFFITLLVLLCFNVLG-EGAAVLLPRL 503 (704)
T ss_pred HHHHHHHHHHHh-----ccHHHHHHH-HHHHHH--HHHHHH---HHhHHHH--HHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 999999988774 222222211 111111 122121 2255554 4556666555433222 4567899999
Q ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhH-HhHHHHhhchhhHHHHH
Q 042529 194 STILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFL-EGYKCVLNSKQTEESLA 272 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~~l~ 272 (456)
++|+|||++|+++++++||.|.++++++.+++.++..++|++.+++.|..+..+ +..+ ...|+.-+..++.++..
T Consensus 504 ~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~----~~~yr~aRR~a~~~~a~l~~~~ 579 (704)
T TIGR01666 504 LDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSD----DLKYRIARRNAHNYDAALSTTV 579 (704)
T ss_pred HHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887665422 1111 22233333444555555
Q ss_pred hHhccCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 273 NFAGWEPGHGEFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDACINMSYEAVKALKELAFSIQT 352 (456)
Q Consensus 273 ~~a~~Ep~~~r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~sl~~ 352 (456)
+-...||++.+ ..|+..-++....+.....+.+|..+- +... .++ +...+++...++...|..+......
T Consensus 580 ~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r-~~~~-~~~----~~~~~~~~~~~~~~~l~~~~~~~~~ 649 (704)
T TIGR01666 580 SNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAHR-DRLK-NLQ----QTAQFLDGFYPVAKKLIYTLEHIEE 649 (704)
T ss_pred HHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCH-hhCC-ChH----HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66678999765 335544455555556666666665431 1111 112 2234445555666666666655542
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhc
Q 042529 353 MTKPCSANSHITKSKIAAKNLKSLLST 379 (456)
Q Consensus 353 ~~~~~~~~~~~~~~~~a~~~L~~~l~~ 379 (456)
.. +.. ..+..+..++|.+.+..
T Consensus 650 ~~----~~~-~~~~~~~~~~~~~~l~~ 671 (704)
T TIGR01666 650 IP----EAI-FNQQQESIETLELRKQE 671 (704)
T ss_pred cc----cch-hhhHHHHHHHHHHHHhh
Confidence 11 111 23455666677777654
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.95 E-value=1.1e-25 Score=242.33 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=180.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhc---------ccCchhHHHHHHHHHHHHHHHH
Q 042529 45 GQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVF---------EFSVGGTLSRGLNRGLATFLAA 115 (456)
Q Consensus 45 ~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~---------~pt~G~t~~k~~~Ri~GTliG~ 115 (456)
.+++..+++|++|+++|++++.+++ .+++++ +|+||++||++|+ ||..|+++.|+++|++||++|+
T Consensus 2 ~~p~~~~~~falk~~lA~~LAL~ia----~~l~L~-~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa 76 (652)
T PRK10631 2 FSIANQRLRFAVKLAFAIVLALFVG----FHFQLE-TPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGC 76 (652)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH----HHCCCC-CccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHH
Confidence 3567889999999999999965444 457887 9999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHH
Q 042529 116 GLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDD-EVWHMAHMRVS 194 (456)
Q Consensus 116 ~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~-~~~~~a~~R~~ 194 (456)
+.|+++..+. .++|+++.+.+.+|+++++|...+ .+.+++|+++++++|.++|+++...+| +++++++.|+.
T Consensus 77 ~~~l~l~~~f-----~~~p~l~~l~l~lWig~c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~ 149 (652)
T PRK10631 77 IAALVIIIAT-----IRAPLLMILLCCIWAGFCTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCS 149 (652)
T ss_pred HHHHHHHHHh-----cCChHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 9999998763 357887777777777666665533 233578999999999999999876665 47899999999
Q ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhHHHHhhchhhHHHHHhH
Q 042529 195 TILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGYKCVLNSKQTEESLANF 274 (456)
Q Consensus 195 ~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~l~~~ 274 (456)
+|+||++|+.+|+.+++|.+.++.++..+.+.+.+..++++.++.. .+. +.......+++.+....|.+..+
T Consensus 150 Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~~----~~~~~~~~~L~~di~~le~lr~~ 221 (652)
T PRK10631 150 EIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH----GDK----EEVDKAWGDLVRRTTALNGMRSN 221 (652)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc----Ccc----chhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999877642 111 11222445556667788999999
Q ss_pred hccCCCCCC
Q 042529 275 AGWEPGHGE 283 (456)
Q Consensus 275 a~~Ep~~~r 283 (456)
+.||.++.|
T Consensus 222 ~~~e~~~~r 230 (652)
T PRK10631 222 LMMESSRWQ 230 (652)
T ss_pred hccCCcchh
Confidence 999988765
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.89 E-value=1.5e-20 Score=201.83 Aligned_cols=223 Identities=17% Similarity=0.099 Sum_probs=157.3
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 042529 41 TKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFG 120 (456)
Q Consensus 41 ~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~ 120 (456)
+|.-...|+..++|++|+.+|++++..++. ..+++ +|||+++|+++|++|+.|.|.+|+++|++||++|+++|++
T Consensus 340 ~~~dA~tNp~~~R~ALRt~lAa~La~~i~~----~l~w~-~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~l 414 (683)
T PRK11427 340 MVADAFTNPDYMRYALKTLLACLICYTFYS----GVDWE-GIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALL 414 (683)
T ss_pred hhHHhccCHHHHHHHHHHHHHHHHHHHHHH----HcCCC-ccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566788899999999999999765544 35676 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHHHH
Q 042529 121 AHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDE-VWHMAHMRVSTILIG 199 (456)
Q Consensus 121 ~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~-~~~~a~~R~~~i~iG 199 (456)
+..+. .++..+...+.++++.+.++..+... ...+++|+++.+++|+.++.+.....+. ....+.+|+.+|++|
T Consensus 415 l~v~l--~P~l~~~~~Llllllp~~llg~wv~~---~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLG 489 (683)
T PRK11427 415 FTLLV--MPWLDNIVELLFVLAPIFLLGAWIAT---SSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIG 489 (683)
T ss_pred HHHHh--ccccccHHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHH
Confidence 87553 22222222222222222221122211 1236788888888998887764322222 234577899999999
Q ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhH-HhHHHHhhchhhHHHHHhHhccC
Q 042529 200 GFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFL-EGYKCVLNSKQTEESLANFAGWE 278 (456)
Q Consensus 200 i~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~~l~~~a~~E 278 (456)
++++.+++.++||.|.++.+++.+.+.++.++++++...+ . .. ..+..+ +..+.+-...++.|.+.....+|
T Consensus 490 i~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~-----~-~~-~~~~~~~~~R~~l~~a~~~le~~~~rl~~E 562 (683)
T PRK11427 490 TVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQ-----Q-EV-TALRTYLQIRIGLHAAFNACEEMCQRVALE 562 (683)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccc-----c-ch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998875321 1 00 011111 12233333446677777777899
Q ss_pred CC
Q 042529 279 PG 280 (456)
Q Consensus 279 p~ 280 (456)
|.
T Consensus 563 pq 564 (683)
T PRK11427 563 RQ 564 (683)
T ss_pred cc
Confidence 93
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.77 E-value=1.7e-16 Score=175.08 Aligned_cols=187 Identities=22% Similarity=0.269 Sum_probs=140.5
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccC-chhHHHHHHHHHHHHHHHHHHHH
Q 042529 41 TKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFS-VGGTLSRGLNRGLATFLAAGLGF 119 (456)
Q Consensus 41 ~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt-~G~t~~k~~~Ri~GTliG~~la~ 119 (456)
+....++++..++||+|++++++++.+++. +.+++ +|+|+++|+++|++|+ +|++..++.+|+.||++|+.+|.
T Consensus 344 ~~~~~~~~~~alr~a~R~ala~~~~~~~~~----~~~w~-~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~ 418 (674)
T COG1289 344 ALAHHRLNSPALRHALRTALALLLGYAFWL----ALGWP-HGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGL 418 (674)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHH----HhcCC-ccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999999775544 36787 9999999999999999 99999999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 042529 120 GAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIG 199 (456)
Q Consensus 120 ~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iG 199 (456)
++.++. .+.... .+.++++...+.+.+++. .+|.++.+ ++|+.+....+....+...+...|+.++++|
T Consensus 419 ~~l~~~--~p~~~~--~l~~l~~~~~l~~~~~~~-----~~~~~a~~--~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG 487 (674)
T COG1289 419 LVLLLL--LPLIPG--LLLLLLLAALLFAAGIRL-----AKYRLATL--GITLLVLFLVGLLGSNGPDYDLPRFLDTLLG 487 (674)
T ss_pred HHHHHh--cccchh--HHHHHHHHHHHHHHHHHh-----cchhHHHH--HHHHHHHHHHHHcccchhhhhHHHHHHHHHH
Confidence 998774 111111 111111111111112221 25666653 3444444444433346678899999999999
Q ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhcc
Q 042529 200 GFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQ 243 (456)
Q Consensus 200 i~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~ 243 (456)
+++|+++.+++||.|....+++...+.++...+++....+.+..
T Consensus 488 ~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 531 (674)
T COG1289 488 SLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPT 531 (674)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999987765544
No 9
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.76 E-value=9.3e-16 Score=153.64 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042529 53 IHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLG 132 (456)
Q Consensus 53 ~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~ 132 (456)
...+|+|+|++++.+++. +++++ .+..|++|++++++||...+++++++|+.|+++|+++|.++..+ +| .
T Consensus 11 ~RtlKt~ia~~La~~ia~----~l~~~-~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l---~g--~ 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAH----LLGLP-QPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLL---FG--Q 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCCC-chHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--c
Confidence 567999999999776655 45676 88899999999999999999999999999999999999999877 45 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042529 133 EPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCVCILIFP 212 (456)
Q Consensus 133 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v~~li~P 212 (456)
+|+.+++.+.+++.++..++. .-|.....+....++ .+...+.++... |+.++++|+++|++||.++.|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~~--------~~g~~~~~~~~~~ii-~~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLKL--------ENGVVPITVGVLHIL-VAAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHH-HHcccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 788888776666554444432 223322222222222 222334444333 999999999999999998888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 042529 213 VWAGTDLHNLVANNIDKLANFLEG 236 (456)
Q Consensus 213 ~~a~~~L~~~l~~~l~~la~~l~~ 236 (456)
+. .+++....+........+..
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~ 171 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWE 171 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHH
Confidence 87 55555555555555554443
No 10
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.74 E-value=2.4e-15 Score=161.90 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=136.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 47 DDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLAN 126 (456)
Q Consensus 47 ~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~ 126 (456)
..|.+.-..+|+.++.+++..+++ ..+++ +++|++.++++++||..|.+..|++.|++||++|+.+++++....
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~----~l~~P-~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~- 98 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISM----TFEIP-FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWS- 98 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH----HcCCC-HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 445566667999999999654443 35677 999999999999999999999999999999999999999997663
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHH--HhcCCCCchHHHHHHHHHHH-----HHHH
Q 042529 127 LSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLI--SVSGYRDDEVWHMAHMRVST-----ILIG 199 (456)
Q Consensus 127 ~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv--~l~~~~~~~~~~~a~~R~~~-----i~iG 199 (456)
.+.|.+..+++.+|.+++.|+.. .+|.+|.+++.++|. ++ .+.+..+ ..-...|..+ |.+|
T Consensus 99 ----v~~P~l~~l~ialw~~~~lyl~r----~~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~R~~e~~w~~i~~g 166 (683)
T PRK11427 99 ----YGYPLIRLIIAGPILMGCMFLMR----THRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVVRLTLWCIVVGLYP 166 (683)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHH-HHHhhcccccc---hHHHHHHHHHHHHHHHHHH
Confidence 46788777777777665556532 345789999999994 55 3333222 1223888888 9999
Q ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Q 042529 200 GFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLE 235 (456)
Q Consensus 200 i~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~ 235 (456)
++|+.+||.++||.+.++.++..+.+.+++..+++.
T Consensus 167 i~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 167 TLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998877765
No 11
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.63 E-value=5.5e-15 Score=128.63 Aligned_cols=117 Identities=29% Similarity=0.445 Sum_probs=86.1
Q ss_pred cCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhh
Q 042529 76 DGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFP 155 (456)
Q Consensus 76 ~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~ 155 (456)
.+.+ |++|+++|++++++|+.+++.+|+.+|++||++|+++|+++..+. +++ +.+.+.+++..++..+.+
T Consensus 9 ~~~~-~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~--- 78 (128)
T PF13515_consen 9 LGLP-HGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF-----PGN-YVLILIVFLLMFLIFYFL--- 78 (128)
T ss_pred HcCC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCH-HHHHHHHHHHHHHHHHHH---
Confidence 4555 999999999999999999999999999999999999999998764 233 333333333333222222
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHH
Q 042529 156 RMKARYDYGLLIFILTFCLISVSGYR---DDEVWHMAHMRVSTILIGGFTAVCV 206 (456)
Q Consensus 156 ~~~~~y~y~~~i~~lT~~lv~l~~~~---~~~~~~~a~~R~~~i~iGi~ia~~v 206 (456)
+ ++|+...+.+|+.++.+.+.. +.+.++.+.+|+.++++|+++++++
T Consensus 79 --~--~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 --S--KNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred --h--ccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 2 334455666777777666542 4456789999999999999999864
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.61 E-value=1.8e-14 Score=128.16 Aligned_cols=136 Identities=26% Similarity=0.360 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 042529 54 HSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGE 133 (456)
Q Consensus 54 ~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~ 133 (456)
..+|+++|++++..++. +.+.+ ++++|.+++++++|||..+|++.+++|+.|+++|+++|+++..+. | .+
T Consensus 6 r~iKtaiA~~la~~ia~----~l~~~-~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g--~~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQ----LLGLQ-YPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---G--YN 75 (141)
T ss_pred HHHHHHHHHHHHHHHHH----HHCCC-chHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--cc
Confidence 46899999999765544 34665 899999999999999999999999999999999999999997763 4 47
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042529 134 PILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCVCILI 210 (456)
Q Consensus 134 ~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v~~li 210 (456)
|+.+++.+++.......++ ...+...+.+++..++.. .+++. ..+..|+.++++|+++|++||+++
T Consensus 76 ~~~~~l~v~i~i~~~~~l~--------~~~~~~~a~v~~~~i~~~--~~~~~-~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWLK--------LGEGIIVAAVTFVHILLS--GSDSF-SYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CCCeehHHHHHHHHHHHc--CCccH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8777776655544322222 222333343444333332 23333 349999999999999999999864
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=2.1e-12 Score=142.72 Aligned_cols=216 Identities=22% Similarity=0.213 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 47 DDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLAN 126 (456)
Q Consensus 47 ~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~ 126 (456)
.....++|++|+.+|+.++.+++| +.+++ +++|+++|+.++++|..|+.+.|++.|++||++|..++.++..+.
T Consensus 6 ~~~~~~~~~lr~~~a~~la~~~~~----~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~- 79 (674)
T COG1289 6 PTNADWRYALRTFLAACLALALAF----LLGLP-QPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL- 79 (674)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH----HcCCC-CccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 345578999999999999776665 45666 999999999999999999999999999999999999999997653
Q ss_pred hcCCCChhHHHHHHHHHHHHHHH-HHhHhhccccchhHHHHHHHHHHHHHHhcC--CCCc-hHHHHHHHHHHHHHHHHHH
Q 042529 127 LSGKLGEPILLGLFVFLLASTVT-FVRFFPRMKARYDYGLLIFILTFCLISVSG--YRDD-EVWHMAHMRVSTILIGGFT 202 (456)
Q Consensus 127 ~~g~~~~~~~~~~~v~l~~~~~~-~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~--~~~~-~~~~~a~~R~~~i~iGi~i 202 (456)
+ ++|+.+.+++.++.+.++ ....+ .....|++.++++|+.++. +. ...+ ..+..+++|..++++|+.|
T Consensus 80 -~---~~p~~f~~~~~~~~~l~~~~~~~~---~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 151 (674)
T COG1289 80 -A---QEPWLFLLLLTLWLGLCTAIGSLY---RTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILC 151 (674)
T ss_pred -c---cCcHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345544433333332222 22222 3345789999999998887 32 2222 2689999999999999999
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhHHHHhhchhhHHHHHhHhccCCCCC
Q 042529 203 AVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGYKCVLNSKQTEESLANFAGWEPGHG 282 (456)
Q Consensus 203 a~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~l~~~a~~Ep~~~ 282 (456)
+-.+....+|.+.+..|...+.........+..... ..+.. ..+.........++.....+.+... .+|...+
T Consensus 152 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~l~~~~~~~~~r~~-~~~~~~~ 224 (674)
T COG1289 152 APVVPLLESPSRLYQALANYLEAKSRLFAQLLLAAA----AGELL--DTARQNAALVDALAQTLTLRLLRSA-GFEGSRG 224 (674)
T ss_pred hccchHhhhHHHHHHHHHHHHHHHHhccchhhhhhh----cCCcc--cHHHHhHHHHHHHHHHHHHHHHHHh-cccCCch
Confidence 999998888887777766665555544444433221 11101 1122223344455555555555554 6666654
Q ss_pred C
Q 042529 283 E 283 (456)
Q Consensus 283 r 283 (456)
+
T Consensus 225 ~ 225 (674)
T COG1289 225 R 225 (674)
T ss_pred h
Confidence 4
No 14
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.36 E-value=1.3e-10 Score=111.83 Aligned_cols=206 Identities=16% Similarity=0.115 Sum_probs=132.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhchhhccCC--CCCC---cchhhHHhHHHHhhchhhHHHHHhHhccCCCCCCc
Q 042529 210 IFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIP--QDGE---MDMTFLEGYKCVLNSKQTEESLANFAGWEPGHGEF 284 (456)
Q Consensus 210 i~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~--~~~~---~~~~~~~~~~~~L~~~~~~~~l~~~a~~Ep~~~r~ 284 (456)
.+|.+++..+|+.+++.+..++++|..++..+.... .+.. ..+...+.+.++....+..+.++.+++|||+.++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G- 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG- 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC-
Confidence 479999999999999999999999998777665432 1111 1223445555656666788999999999999533
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 042529 285 RFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKM----QDACINMSYEAVKALKELAFSIQTMTKPCSAN 360 (456)
Q Consensus 285 ~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~----~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~ 360 (456)
+||.+.|.++...+.+..+.+..|..... ... |.+.++.+ ...-..+.+++-.+|..++++++++.|.| +.
T Consensus 80 --~FP~~~Y~~l~~~~~~il~~l~~l~~~~~-~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP-~~ 154 (229)
T PF10334_consen 80 --RFPKETYQRLLELCQNILDLLSLLSYVST-RLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLP-PY 154 (229)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCC-cc
Confidence 78999999997665555544444432222 222 54544444 33445667788899999999999999886 44
Q ss_pred ccchHHHHHHHHHHHHHhccc----------cccchhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC
Q 042529 361 SHITKSKIAAKNLKSLLSTSL----------CKETEILDLIPAVTVA---SLLVDAVACTEKIAESVQELASIA 421 (456)
Q Consensus 361 ~~~~~~~~a~~~L~~~l~~~~----------~~~~~~~~~~~~~~~a---sllie~~~~le~l~~~v~~L~~~~ 421 (456)
+..|-..+..+-+........ .-+.++.....+..|. +....+.+++++|+..|++|+|+.
T Consensus 155 lp~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~ 228 (229)
T PF10334_consen 155 LPAPLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVAVSAASSILERLDELVIVVKELVGEQ 228 (229)
T ss_pred CCcchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 322222222222222111000 0022333333444443 444599999999999999999875
No 15
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.30 E-value=8.8e-09 Score=113.46 Aligned_cols=178 Identities=23% Similarity=0.153 Sum_probs=130.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 47 DDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVF--EFSVGGTLSRGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 47 ~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~--~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l 124 (456)
+.+..+++++|+++++.+++++++. .+|+ .+.-+++++.++. -.+.+....+...++.|+++|+++|+++.++
T Consensus 335 d~~~A~~~alra~la~~~~~l~Wi~----t~W~-~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 335 DWPLALRNALRAFLAILIAGLFWIA----TGWP-SGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----cCCC-hhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345689999999999998876553 4677 6777777776665 7788899999999999999999999988765
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 042529 125 ANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAV 204 (456)
Q Consensus 125 ~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~ 204 (456)
. .++.++...++++++.+.+...+. ..++++.+.++.+.+.|.+.+..++.....+....++.+.+++|++++.
T Consensus 410 v--lP~~~~f~~L~l~l~~~l~~~~~~----~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~ 483 (650)
T PF04632_consen 410 V--LPHLDGFPLLALVLAPFLFLGGLL----MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAA 483 (650)
T ss_pred h--hhccCcHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 333333333333322222222222 2356777766666666666665555444456789999999999999999
Q ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHH
Q 042529 205 CVCILIFPVWAGTDLHNLVANNIDKLANFLE 235 (456)
Q Consensus 205 ~v~~li~P~~a~~~L~~~l~~~l~~la~~l~ 235 (456)
++..+++|.......++.+....+++++..+
T Consensus 484 l~~~li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 484 LVFRLIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988888887654
No 16
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.28 E-value=3.6e-08 Score=104.44 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=162.7
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhc-ccCchhHHHHHHHHHHHHHHHHHHHH
Q 042529 41 TKKLGQDDPRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVF-EFSVGGTLSRGLNRGLATFLAAGLGF 119 (456)
Q Consensus 41 ~~~~~~~d~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~-~pt~G~t~~k~~~Ri~GTliG~~la~ 119 (456)
.|-..+.|.+.++.-+|.+++..++.++++..+...-+++.+|.++|..+++. .-.+|..+...+.=++|+.+|...|+
T Consensus 5 ~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~ 84 (459)
T PF10337_consen 5 AWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGL 84 (459)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35545678888999999999999999888877765566668888877765543 23677778888888888888888887
Q ss_pred HHHHHHhhcC-C------------------CChh-------------------HHHHHHHHHHHHHHHHHhHhhccccch
Q 042529 120 GAHHLANLSG-K------------------LGEP-------------------ILLGLFVFLLASTVTFVRFFPRMKARY 161 (456)
Q Consensus 120 ~~~~l~~~~g-~------------------~~~~-------------------~~~~~~v~l~~~~~~~~~~~~~~~~~y 161 (456)
+..+++...- + ..++ .+.++.+++.+++..++|.. .+++
T Consensus 85 l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p~~ 161 (459)
T PF10337_consen 85 LAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NPKL 161 (459)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---Ccch
Confidence 7776654321 1 0011 11223333333333344432 2345
Q ss_pred hHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhch
Q 042529 162 DYGLLIFILTFCLISVSGYRDDE--VWHMAHMRVSTILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGP 239 (456)
Q Consensus 162 ~y~~~i~~lT~~lv~l~~~~~~~--~~~~a~~R~~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~ 239 (456)
..+...+.+...+.+..+...|. ...++..=+.-..+|+++++++|++|||...+..+.+.+.+.+..+...++...
T Consensus 162 ~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~- 240 (459)
T PF10337_consen 162 NFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQR- 240 (459)
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence 54443333333333333322233 344444455667999999999999999999999999999988888888877543
Q ss_pred hhccCCCCCCcch----hhHHhHHHHhh-chhhHHHHHhHhccCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 042529 240 LYFQIPQDGEMDM----TFLEGYKCVLN-SKQTEESLANFAGWEPGHGEFRFRHPWKQYLKIGSLTRNCAYRIEALN 311 (456)
Q Consensus 240 ~~~~~~~~~~~~~----~~~~~~~~~L~-~~~~~~~l~~~a~~Ep~~~r~~~~~p~~~y~~i~~~lr~~~~~l~aL~ 311 (456)
+|+...+.+...+ +.++..+..+. ...+.+.-..+++.|-..|+. +-+.+..+...+|+....+..|.
T Consensus 241 ~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl----~~~Dl~~i~~~lr~l~~~~~gL~ 313 (459)
T PF10337_consen 241 NFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRL----SPDDLKPIFSLLRSLMIPLSGLS 313 (459)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443322111 11222222222 224567777888889888764 45667777666676554444433
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=99.06 E-value=3.7e-07 Score=90.72 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHH
Q 042529 109 LATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHM 188 (456)
Q Consensus 109 ~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~ 188 (456)
+.|++|..++.+++.+. .+.|+++.+.+++++++++++..+. +++ +. ++..+..+.+++ ...++....
T Consensus 3 ~~~~~~~~~~s~~~~l~-----~~~~~l~~~~~~~~~F~~~ml~~~G---~r~--~~-i~~~~Ll~~v~t-~~~~~~~~~ 70 (284)
T PF12805_consen 3 IATLLCFALASLLVGLL-----FPYPWLLILVLALLTFFFGMLGVYG---PRA--AT-IGFATLLVAVYT-MAGPSPGPE 70 (284)
T ss_pred HHHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHh---hHH--HH-HHHHHHHHHHHH-HhCCCcchH
Confidence 34555554444443332 1345655555555555555555432 222 22 332232222221 111211125
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhH---HhHHHHhhc-
Q 042529 189 AHMRVSTILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFL---EGYKCVLNS- 264 (456)
Q Consensus 189 a~~R~~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~L~~- 264 (456)
++.+...+++|.++.++++++.||.+..+-.++.+++.+..+++|++.-. +++.+....+ .+... ...+..++.
T Consensus 71 ~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka-~~~~p~~~~~-~~~~~~~l~~~q~~v~~~ 148 (284)
T PF12805_consen 71 ALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKA-RFFDPDQHDD-DEQLRIELAQQQIKVNEA 148 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccc-hhHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999998533 3332211111 11110 111111222
Q ss_pred hhhHHHHHhHhccCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHHHHH
Q 042529 265 KQTEESLANFAGWEPGHGEFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGK-----MQDACINMSYEA 339 (456)
Q Consensus 265 ~~~~~~l~~~a~~Ep~~~r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~-----~~~~~~~l~~~~ 339 (456)
.+..+...-.. ..++++. |-....++ ++.....++-.+....+.. ..+++++. +...++++..+.
T Consensus 149 ~~~~R~~l~~~-r~~~~~~-----~~~~~~~l---l~~~~~a~Dl~E~~~as~~-~y~~l~~~f~~~~~l~~~~~~l~~~ 218 (284)
T PF12805_consen 149 LEQARELLLRR-RRSGRGK-----PSTYGRRL---LLLFFEAVDLFERALASHY-DYEELREQFKHSDVLFRFQRLLEQL 218 (284)
T ss_pred HHHHHHHHHHh-hcccCCC-----CCcHHHHH---HHHHHHHHHHHHHHHhccc-cHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22233332221 1122211 11111111 1222222222222222111 12334333 235677888888
Q ss_pred HHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHh
Q 042529 340 VKALKELAFSIQTMTKPCSANSHITKSKIAAKNLKSLLS 378 (456)
Q Consensus 340 ~~~L~~La~sl~~~~~~~~~~~~~~~~~~a~~~L~~~l~ 378 (456)
+..++.++.++...++.+ +.++++.+.+++++.+.
T Consensus 219 a~~l~~ia~ai~~~~~~~----~~~~l~~~l~~l~~~l~ 253 (284)
T PF12805_consen 219 AQALRQIAQAILRGRPYH----HRNRLKRALEALEESLE 253 (284)
T ss_pred HHHHHHHHHHHHcCCCCC----CchHHHHHHHHHHHHHH
Confidence 899999999999777653 23566777777777764
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.98 E-value=3.1e-06 Score=93.52 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042529 50 RRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSG 129 (456)
Q Consensus 50 ~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g 129 (456)
..+.+++|+.+|+..+.++.++. +..+-++=+.+.++...-.+....+..=+.+++-|++...++.+.+.+. +
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~----~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~- 78 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFF----DISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--F- 78 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh----CchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--h-
Confidence 46889999999998876655432 2222344445556666666777888888888888888888888777664 2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042529 130 KLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCVCIL 209 (456)
Q Consensus 130 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v~~l 209 (456)
+.|+++.+.+++.+++++.+.- +.++|. . ++..|.. ++++.................+++|.++..+++++
T Consensus 79 --~~p~lf~~~l~~~tf~~~mlga---~G~Rya--~-Iaf~tLl-iaiytmlg~~~~~~w~~~pllll~GalwY~llsl~ 149 (704)
T TIGR01666 79 --GKPWLFAVGLTVSTFGFIMLGA---VGQRYA--T-IAFGSLL-VALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLI 149 (704)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHH---hhhhHH--H-HHHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444433333332 233442 1 2222222 11111111111112344778899999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhH---HHHhhchhh-HHHHHhHhccCCCCCCcc
Q 042529 210 IFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGY---KCVLNSKQT-EESLANFAGWEPGHGEFR 285 (456)
Q Consensus 210 i~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~-~~~l~~~a~~Ep~~~r~~ 285 (456)
.|+.+..+-+++.+++.+..+++|++.-. .++.++.+.+...+..+.. ..+.+..+. .+++.. +....+
T Consensus 150 ~~~l~p~rp~q~~LA~~y~~La~yL~aka-~lf~p~~~~~~~~~~~~~a~~n~~lv~~ln~ar~~Ll~--r~~~~~---- 222 (704)
T TIGR01666 150 VHLFFPNRPVQENLAKAFCQLAEYLETKS-CFFDPDEVAEIQKKHLNFAMKNANVVTALNQVKTALLT--RIRGQH---- 222 (704)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHH-hhCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHHHHH--HhccCC----
Confidence 99999999999999999999999998432 2443322211111111110 111222222 233322 111111
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 042529 286 FRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQ-----DACINMSYEAVKALKELAFSIQTMTKPCSAN 360 (456)
Q Consensus 286 ~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~-----~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~ 360 (456)
+.+ ...++ ++.. ....-+|....+.....+++++.+. ..++++-...++.+++++.++...++..
T Consensus 223 -~~~--~~~r~---l~~y-~~AqDihEra~ssh~~y~~L~~~f~~sdvL~~~~~ll~~~a~ac~~la~ai~~~~~~~--- 292 (704)
T TIGR01666 223 -RHP--LTQRM---LRYY-FAAQDIHERASSSHFDYQQLTEHFKNSDLLFRFQRLLELQAQACKEITASIRLNKPYQ--- 292 (704)
T ss_pred -CCh--HHHHH---HHHH-HHHHHHHHHHHHcccCHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---
Confidence 111 11122 1111 1223333322222222234554432 4566777788889999999999766543
Q ss_pred ccchHHHHHHHHHHHHHh
Q 042529 361 SHITKSKIAAKNLKSLLS 378 (456)
Q Consensus 361 ~~~~~~~~a~~~L~~~l~ 378 (456)
+-+..+.+.++++..+.
T Consensus 293 -~~~~~~~al~~l~~sl~ 309 (704)
T TIGR01666 293 -HDKRVERALLGTLHSLD 309 (704)
T ss_pred -CCchHHHHHHHHHHHHH
Confidence 22455666666666653
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.95 E-value=1.6e-06 Score=96.08 Aligned_cols=292 Identities=14% Similarity=0.160 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042529 50 RRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSG 129 (456)
Q Consensus 50 ~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g 129 (456)
..+.+++|+.+|+..+.++.++ ++....++=+.+.++..--.+....+..=+.+++-|++...++.+.+.+. +
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~----~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll--~- 78 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWW----FGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL--F- 78 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--h-
Confidence 4678999999999887654443 23222444444555555555667777777777777777777776666653 2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHhhccccchh---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 042529 130 KLGEPILLGLFVFLLASTVTFVRFFPRMKARYD---YGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCV 206 (456)
Q Consensus 130 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~---y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v 206 (456)
+.|+++.+.+++.+++++.+.- +.++|. .|. +.+..++++ +...+. ....--..+++|.++..++
T Consensus 79 --~~p~~~~~~l~~~tf~~~mlga---~G~r~~~I~f~~-L~~aiytml---~~~~~~---~w~~~pllll~GalwY~l~ 146 (701)
T TIGR01667 79 --PKPWLFPFLLTLLTFGFILLGA---LGQRYATIAFAS-LLAAIYTML---GAGEVP---VWFIEPLLILAGTLWYGLL 146 (701)
T ss_pred --cchHHHHHHHHHHHHHHHHHHH---hhhhHHhHHHHH-HHHHHHHHc---Cccccc---HHHHHHHHHHHHHHHHHHH
Confidence 3455554444444443333332 233553 222 111222222 111222 1222555688899999999
Q ss_pred HhhcccccchhHHHHHHHHHHHHHHHHHHhhchhhccCCCCCCcchhhHHhH---HHHhhchhh-HHHHHhHhccCCCCC
Q 042529 207 CILIFPVWAGTDLHNLVANNIDKLANFLEGFGPLYFQIPQDGEMDMTFLEGY---KCVLNSKQT-EESLANFAGWEPGHG 282 (456)
Q Consensus 207 ~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~-~~~l~~~a~~Ep~~~ 282 (456)
+++.+..+..+-+++.+++.+..+++|++.= ..++.+.+..+.++...+.. ..+.+..+. .+.+.. +. +.+
T Consensus 147 sll~~~l~p~rp~q~~La~~y~~La~yL~aK-a~lf~p~~~~~~~~~~~~l~~~n~~lv~~ln~~~~~ll~--r~--~~~ 221 (701)
T TIGR01667 147 TLIWFLLFPNQPLQESLSRLYRELAEYLEAK-SSLFDPDQHTDPEKALLPLAVRNGKVVDALNQCKQQLLM--RL--RGN 221 (701)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHH--Hh--cCC
Confidence 9999999999999999999999999999842 23443322211111111111 111222221 223322 11 111
Q ss_pred CcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCC
Q 042529 283 EFRFRHPWKQYLKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDA-----CINMSYEAVKALKELAFSIQTMTKPC 357 (456)
Q Consensus 283 r~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~-----~~~l~~~~~~~L~~La~sl~~~~~~~ 357 (456)
+ +.+ ...++ ++. .....-+|....+.....+++++.+..+ ++++....++.+++++.++...++..
T Consensus 222 ~---~~~--~~~rl---l~~-y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~~~~~ 292 (701)
T TIGR01667 222 R---TDP--LTKRM---LRY-YFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLRQPYY 292 (701)
T ss_pred C---CCc--hHHHH---HHH-HHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 0 111 11111 111 1122334444444444456677777655 88888899999999999999766543
Q ss_pred CCCccchHHHHHHHHHHHHHh
Q 042529 358 SANSHITKSKIAAKNLKSLLS 378 (456)
Q Consensus 358 ~~~~~~~~~~~a~~~L~~~l~ 378 (456)
+.++.+.+.+.+...+.
T Consensus 293 ----~~~~~~~~~~~l~~sl~ 309 (701)
T TIGR01667 293 ----HRLRTERALEKQIAALE 309 (701)
T ss_pred ----CCchHHHHHHHHHHHHH
Confidence 23445666666666653
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.95 E-value=0.014 Score=64.20 Aligned_cols=158 Identities=19% Similarity=0.114 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHh-----cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 52 IIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVV-----FEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLAN 126 (456)
Q Consensus 52 ~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv-----~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~ 126 (456)
..-++|+++++.+++++... .+|+ .|.-+++.+.++ ..|+--. -..+=+.||++|..+|.++..+.
T Consensus 353 ~~~glRa~~ai~~~~~fWI~----TgW~-~Ga~a~~~aAV~~~LfA~~~nP~~---~~~~fl~Gtl~a~~~a~l~~f~v- 423 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLW----TGWT-SGSGAMVMIAVVTSLAMRLPNPRM---VAIDFLYGTLAALPLGALYFMVI- 423 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCc-hHHHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45678888999888865443 5676 555554443333 2444433 34444688999998888876543
Q ss_pred hcCCCC-hhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 042529 127 LSGKLG-EPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVC 205 (456)
Q Consensus 127 ~~g~~~-~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~ 205 (456)
.++.+ ...++.+++....+ ++.... -++ .++.+-+.+.++..+...+.....+...++.-+..++|+++|.+
T Consensus 424 -LP~i~~~f~lL~laLap~~~---~~g~~~-~~~--~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l 496 (652)
T PRK10631 424 -IPNTQQSMLLLCISLGVLGF---FIGIEV-QKR--RLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALI 496 (652)
T ss_pred -HhcccccHHHHHHHHHHHHH---HHHHHh-ccc--HHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 23322 22222222221111 211111 122 33422333334433333332223356678888999999999999
Q ss_pred HHhhcccccchhHHHHHHHH
Q 042529 206 VCILIFPVWAGTDLHNLVAN 225 (456)
Q Consensus 206 v~~li~P~~a~~~L~~~l~~ 225 (456)
+..++.|.......++.+..
T Consensus 497 ~f~lirp~~~~r~~rrL~~~ 516 (652)
T PRK10631 497 VILLVRDNSRDRTGRVLLNQ 516 (652)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 99888887655555554433
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.99 E-value=0.029 Score=49.83 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 042529 55 SLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEP 134 (456)
Q Consensus 55 alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~ 134 (456)
++|.+++.+++..+++ ..+++ .|+.+.+-.++.+.+.---+.+...+=+..+++-+..+.++..+. .+.|
T Consensus 2 ~LRia~g~~l~l~~~~----~~~~~-~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll-----~~~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSK----LFGWP-LPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLL-----QDYP 71 (140)
T ss_pred eeehhHHHHHHHHHHH----HHCCC-chHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCC
Confidence 4677888887554444 35777 888999888888866666666777776777777777777765552 2456
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccc-chhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042529 135 ILLGLFVFLLASTVTFVRFFPRMKA-RYDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCVCIL 209 (456)
Q Consensus 135 ~~~~~~v~l~~~~~~~~~~~~~~~~-~y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v~~l 209 (456)
....+.+++. .+.+++...++ ++-.+. +..+...++...+..+ ...+.++......|++++.+++++
T Consensus 72 ~~~~l~v~l~----~~~~f~~~~~~~~~l~~~-~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL----FFWSFYRMSRGPKFLFGT-MLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH----HHHHHHHHhCCCchHHHH-HHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 6544444332 23334333332 333332 3333333333332222 235777888888888888887653
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=83.94 E-value=85 Score=35.81 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCchH
Q 042529 106 NRGLATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDDEV 185 (456)
Q Consensus 106 ~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~~~ 185 (456)
..+.|.-+|+..|+++..+....+ ...+..+++..|. +.++..+|-.. ++.-+. -++++..++.++.....+.
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~-~~~~~~~~~~af~-GLlaG~fk~~g----K~g~~~-g~~l~~~il~~y~~~~~~~ 262 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLAN-NANLYQIGVFGFA-GLLGGIFKELG----KIGTGI-GYLVGFLILAFYTQGSVAF 262 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcC-ccHHHHHHHHHHH-HHHHHhhccCC----cceeeH-HHHHHHHHHHHHhccchhH
Confidence 344566666666666665543332 3445544443322 22233444322 232222 2344445555554222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------hhHHHHHHHHHHHHHHHHHHhhchhh
Q 042529 186 WHMAHMRVSTILIGGFTAVCVCILIFPVWA---------------------GTDLHNLVANNIDKLANFLEGFGPLY 241 (456)
Q Consensus 186 ~~~a~~R~~~i~iGi~ia~~v~~li~P~~a---------------------~~~L~~~l~~~l~~la~~l~~~l~~~ 241 (456)
. .. +.++++++++-+ +.|.+. .+++++.+...++..++.++.+-+.+
T Consensus 263 ~---~~-~~e~~ia~~lFl-----l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 263 S---LA-LYEALIATLLFL-----LIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred H---HH-HHHHHHHHHHHH-----HhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 456666655543 334221 12356667777777777777655444
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=80.98 E-value=5.2 Score=31.23 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042529 194 STILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGFG 238 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~l 238 (456)
...++|.+++.++.+++-| ..++++|+.+.+..+.+.+-.....
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988888 5688899999888887776665433
No 24
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=78.18 E-value=49 Score=29.32 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=45.0
Q ss_pred cchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHh
Q 042529 81 SAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVR 152 (456)
Q Consensus 81 ~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~ 152 (456)
-+.|+..-.....=-. |...+....=+.+...|.+.|.+...+....+.. .+....+.+++..+.+.+..
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~~~ 89 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVYQA 89 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHHh
Confidence 3478876655443333 7777888888888999999999988877665432 24444455555554444443
No 25
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.43 E-value=14 Score=31.20 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHH
Q 042529 100 TLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEPILL 137 (456)
Q Consensus 100 t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~ 137 (456)
-++-+..=+.|+++|+++|+++=.++ | ..|+.+
T Consensus 45 a~klssefIsGilVGa~iG~llD~~a---g--TsPwgl 77 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFA---G--TSPWGL 77 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCcHHH
Confidence 34555666889999999999998874 2 456643
No 26
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.85 E-value=13 Score=32.85 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=27.3
Q ss_pred cCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 76 DGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAH 122 (456)
Q Consensus 76 ~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~ 122 (456)
+++++....+.++++.++......... ..+|++-|++|..+|+++-
T Consensus 93 l~~~~~~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN 138 (141)
T PF06081_consen 93 LKLGEGIIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVN 138 (141)
T ss_pred hCCCCeehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 445422334555555555433333333 8888888888888888763
No 27
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=71.26 E-value=67 Score=33.18 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 042529 161 YDYGLLIFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVC 205 (456)
Q Consensus 161 y~y~~~i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~ 205 (456)
...|..++...|+++.+........-+ ..|+. +.++++++++
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~ 137 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAIL 137 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHH
Confidence 345666666667777765544332111 34444 5555554443
No 28
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=63.78 E-value=21 Score=30.58 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Q 042529 193 VSTILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLE 235 (456)
Q Consensus 193 ~~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~ 235 (456)
+.-+++|.+++.++.+++-|. .+..+|+.+.+..+.+-...+
T Consensus 8 l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~~~~~ae 49 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDALFELAE 49 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhHHHHH
Confidence 467889999999998877775 477888666655555544443
No 29
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=59.69 E-value=1.9e+02 Score=30.80 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=35.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHH--HHHHHHHHHHHHHHhHh
Q 042529 94 EFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEPILL--GLFVFLLASTVTFVRFF 154 (456)
Q Consensus 94 ~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~--~~~v~l~~~~~~~~~~~ 154 (456)
+=+.|-.-.+..--+.|++.|++.|.+.-.+...++ ..++.. .+..++.+++.+++|-.
T Consensus 94 KIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~--~G~fFpGFTLsA~L~GlIyGl~r~~ 154 (477)
T PRK12821 94 RVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFS--GGVFNYGYVLGAILTGMIAGILREV 154 (477)
T ss_pred EEehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC--CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777778999999999988766552222 222222 23445555555565543
No 30
>PRK11677 hypothetical protein; Provisional
Probab=55.05 E-value=32 Score=30.34 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHHHHHhhc
Q 042529 194 STILIGGFTAVCVCILIFPV-WAGTDLHNLVANNIDKLANFLEGFG 238 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~-~a~~~L~~~l~~~l~~la~~l~~~l 238 (456)
+..+||++|++++..+.-|. ....+|.+.+.+.-..+.+|=+.+.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999988876665 3455566666666665555544433
No 31
>PRK11715 inner membrane protein; Provisional
Probab=52.65 E-value=85 Score=33.30 Aligned_cols=50 Identities=26% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHH
Q 042529 58 VGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRG 108 (456)
Q Consensus 58 ~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri 108 (456)
+|+|+++-.++-+...-+.+|. -+|++.-.+++.+-.-+.....|+..|.
T Consensus 337 VGlAl~lFYLLLLSlSEHigF~-~AYliAa~a~v~li~~Y~~~vl~~~k~g 386 (436)
T PRK11715 337 VGLALVLFYLLLLSLSEHIGFT-LAYLIAALACVLLIGFYLSAVLRSWKRG 386 (436)
T ss_pred HHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 6666655333322233344554 6777766666666666666666666664
No 32
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=51.88 E-value=96 Score=32.83 Aligned_cols=64 Identities=28% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHH--HHHHHHHHHHHHH
Q 042529 58 VGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGL--ATFLAAGLGFGAH 122 (456)
Q Consensus 58 ~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~--GTliG~~la~~~~ 122 (456)
+|+|+++-.++-+...-+.+|. -+|++.-.+++.+-..+...+.|+..|.+ |.+++++.|++..
T Consensus 331 VGlAl~lFYlLLLSlSEhi~F~-~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~ 396 (430)
T PF06123_consen 331 VGLALVLFYLLLLSLSEHIGFN-LAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYV 396 (430)
T ss_pred HHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 6666666433322233344555 77777777777777766666666666643 3344444444443
No 33
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=51.47 E-value=82 Score=23.83 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 26 LPGKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+.+.++..+.+..|-+.+..++|...+....| ++++..+...++|+.
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555556666788887755554 566666666666654
No 34
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=50.97 E-value=1.9e+02 Score=26.23 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 042529 294 LKIGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDACINMSYEAVKALKELAFSIQTMTKPCSANSHITKSKIAAKNL 373 (456)
Q Consensus 294 ~~i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~a~~~L 373 (456)
..+...+.++++....+............ ......++..+...+.+.+.....++.+..+.. ...+.+......++
T Consensus 82 ~~i~~~lErigD~~~~ia~~~~~~~~~~~--~~~~~~el~~m~~~v~~~l~~a~~al~~~d~~~--~~~i~~~e~~id~l 157 (212)
T TIGR02135 82 IKISSDLERIGDYAVNIAKRALRLKEEDA--KPKHLEELEKMGKLALKMLKDALDAFLNKDAEL--ARQVAEMDERVDEL 157 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHH
Confidence 34444455555554444433221111110 023346677777777778887777777533210 00122223333333
Q ss_pred HHHHhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 042529 374 KSLLSTSLCKETEILDLIPAVTVASLLVDAVACTEKIAESVQELASIAKF 423 (456)
Q Consensus 374 ~~~l~~~~~~~~~~~~~~~~~~~asllie~~~~le~l~~~v~~L~~~~~F 423 (456)
...+...-. ........-.......++++..+|++.|....++....|
T Consensus 158 ~~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~lERigD~~~nIae~~~~ 205 (212)
T TIGR02135 158 YRQIFRELV--TYMKENPENIEAALDVLLIARYLERIGDHATNIAERVIY 205 (212)
T ss_pred HHHHHHHHH--HHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321100 000000111223445568888888887777776654433
No 35
>COG5547 Small integral membrane protein [Function unknown]
Probab=49.08 E-value=72 Score=23.83 Aligned_cols=24 Identities=4% Similarity=-0.101 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 101 LSRGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 101 ~~k~~~Ri~GTliG~~la~~~~~l 124 (456)
+++..+|++|-++|.++|+++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 567778999999999999888665
No 36
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=45.56 E-value=3.5e+02 Score=29.05 Aligned_cols=37 Identities=16% Similarity=-0.139 Sum_probs=21.7
Q ss_pred cCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCC
Q 042529 95 FSVGGTLSRGLNRGLATFLA-AGLGFGAHHLANLSGKL 131 (456)
Q Consensus 95 pt~G~t~~k~~~Ri~GTliG-~~la~~~~~l~~~~g~~ 131 (456)
++..+-.+-.-.|..++.+| .+++++...+...+|..
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~ 179 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG 179 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555566666777666 44455555666666654
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=43.26 E-value=5.7e+02 Score=29.40 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 042529 195 TILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKLANFLEGF 237 (456)
Q Consensus 195 ~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~la~~l~~~ 237 (456)
-+++|++++++.|-.+- ..-+.....+.++++++..|+...
T Consensus 152 ~il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~~ 192 (806)
T PF05478_consen 152 IILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLNDT 192 (806)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34678888887775432 223444566667777777776643
No 38
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=42.93 E-value=53 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 042529 181 RDDEVWHMAHMRVSTILIGGFTAVCVCILIFPV 213 (456)
Q Consensus 181 ~~~~~~~~a~~R~~~i~iGi~ia~~v~~li~P~ 213 (456)
..++..+.+.+|+..+++|+++++++.. +.|.
T Consensus 28 ~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 28 SYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 3456788999999999999999999874 4453
No 39
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=41.24 E-value=4.3e+02 Score=27.43 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHhhCCCCc-hHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHH
Q 042529 40 KTKKLGQDDP-RRIIHSLKVGL-AITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGL 117 (456)
Q Consensus 40 ~~~~~~~~d~-~~~~~alK~~l-A~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~l 117 (456)
.++..+-.|+ +..+.+++.|+ |..+...+|.-.. |.+ +.....+.-.-+-++.+....++..|+.-+.++
T Consensus 202 ~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~lG-------a~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 202 AIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-YLG-------ATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-------cCcHhhhcccCCcHHHHHHHHHHHcchhHHHHH
Confidence 3444344455 45678888888 5555443332211 111 111111110114677788899999999988888
Q ss_pred HHHHHHH
Q 042529 118 GFGAHHL 124 (456)
Q Consensus 118 a~~~~~l 124 (456)
++++..-
T Consensus 274 ~i~v~lA 280 (378)
T TIGR00796 274 GLIITLA 280 (378)
T ss_pred HHHHHHH
Confidence 8887543
No 40
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=40.99 E-value=2.3e+02 Score=24.25 Aligned_cols=56 Identities=20% Similarity=0.013 Sum_probs=33.6
Q ss_pred HHHHHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 042529 84 WAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLAS 146 (456)
Q Consensus 84 Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~ 146 (456)
++..++++...|+.- +.+=.+=+.|.++++++|+++..+. | ..++..++++.+...
T Consensus 6 ~gAsa~llf~~p~sp--~aqP~~vi~gh~isa~iG~~~~~~~---~--~~~~~~alav~lai~ 61 (120)
T PF04982_consen 6 FGASAVLLFGAPSSP--LAQPRNVIGGHLISALIGVLCVYLF---G--DPWWAAALAVGLAIV 61 (120)
T ss_pred HHHHHHHhhcCCCCc--hhchHHHHHHHHHHHHHHHHHHHHh---c--cHHHHHHHHHHHHHH
Confidence 344445555556533 3344555789999999999988773 3 334444555555443
No 41
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=40.43 E-value=75 Score=21.67 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 393 AVTVASLLVDAVACTEKIAESVQELAS 419 (456)
Q Consensus 393 ~~~~asllie~~~~le~l~~~v~~L~~ 419 (456)
.+--+-+|+.+-.+++.|.+++++|..
T Consensus 10 i~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 10 IAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445889999999999999999965
No 42
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=39.71 E-value=1.8e+02 Score=25.00 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=30.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCCC-chHH-----------HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q 042529 156 RMKARYDYGLLIFILTFCLISVSGYRD-DEVW-----------HMAHMRVSTILIGGFTAVCVCILIFPVWAGTDLH 220 (456)
Q Consensus 156 ~~~~~y~y~~~i~~lT~~lv~l~~~~~-~~~~-----------~~a~~R~~~i~iGi~ia~~v~~li~P~~a~~~L~ 220 (456)
.+..-|.|-.....+....+++-.+.. |..+ -+.-.|+..|+-|+.+.+ ++.++..|..+-+.
T Consensus 70 smeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggvavvl--tfilcsywpeqffa 144 (175)
T PF13295_consen 70 SMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVAVVL--TFILCSYWPEQFFA 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccchhee--ehhhhhcChHHHHH
Confidence 344446665544444444555544332 3222 123457777766665433 44455555554443
No 43
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=39.08 E-value=25 Score=35.50 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042529 105 LNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 105 ~~Ri~GTliG~~la~~~~~l 124 (456)
+-|+.|+++|+++|++...+
T Consensus 344 ~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 45899999999999988665
No 44
>PRK09823 putative inner membrane protein; Provisional
Probab=38.11 E-value=2.9e+02 Score=24.51 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhHhhccccchhHHHHHHHHHHHHHHhcCCCCc
Q 042529 104 GLNRGLATFLAAGLGFGAHHLANLSGKLGEPILLGLFVFLLASTVTFVRFFPRMKARYDYGLLIFILTFCLISVSGYRDD 183 (456)
Q Consensus 104 ~~~Ri~GTliG~~la~~~~~l~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~lT~~lv~l~~~~~~ 183 (456)
++.-++|+.+|+.+.++...+. .|. .++.++-.++-+.-. |+.. .+-+|..-+.+|-..++.- .+
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~--~~~-~~~~lll~i~~i~pl---f~~l------~w~~g~~pAlLTGVa~Acl---P~ 76 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFL--PGA-KEPLLLLVIIQVLPL---FLLL------SWTTGAIPALLTGVAVACL---PE 76 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhc--CCC-CCchhhhHHHHhhHH---HHHH------HHHHhhHHHHHHHHHHHhC---cH
Confidence 4455789999999988876553 232 234332221111110 1111 2335555556665555442 35
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 042529 184 EVWHMAHMRVSTIL-IGGFTAVCVCILIF 211 (456)
Q Consensus 184 ~~~~~a~~R~~~i~-iGi~ia~~v~~li~ 211 (456)
.+++-.++|.+.-. -|++++.+.|..+.
T Consensus 77 kiyq~~~~R~lacgi~G~vIttLy~~~~~ 105 (160)
T PRK09823 77 KIYQQKIYRCLACGIGGVVITTLYCAVIV 105 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 78889999987654 45567776665444
No 45
>TIGR00930 2a30 K-Cl cotransporter.
Probab=37.50 E-value=6.6e+02 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=20.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 94 EFSVGGTLSRGLNRGLATFLAAGLGFGAH 122 (456)
Q Consensus 94 ~pt~G~t~~k~~~Ri~GTliG~~la~~~~ 122 (456)
.|..|+. .--+.|.+|...|+.+|+..+
T Consensus 139 ~p~aGG~-Y~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 139 VVKGGGA-YYLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCCccHH-HHHHHHHhCcHHHHHHHHHHH
Confidence 3455555 344678899999999998765
No 46
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.12 E-value=4.5e+02 Score=25.87 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCCC----CCCCC--CCCCCCCceeEEecCCCCCC
Q 042529 405 ACTEKIAESVQELASIAKFKSVKPKK----APSRS--SSKISEPEHVITIHQPSSLP 455 (456)
Q Consensus 405 ~~le~l~~~v~~L~~~~~F~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~ 455 (456)
.++..|-.+|++|...+. ++.... -...+ ++|++ |+..|+-+-++|
T Consensus 207 e~I~~L~~eV~~L~~~~~--~~Re~iF~dvll~rpKCTPDmd---V~LnIP~ee~LP 258 (258)
T PF15397_consen 207 EEIPQLRAEVEQLQAQAQ--DPREVIFADVLLRRPKCTPDMD---VILNIPTEEPLP 258 (258)
T ss_pred HHHHHHHHHHHHHHHhhc--chHHHhhHHHhcCCCCCCCCch---hhcCCcccccCc
Confidence 333478889999977666 222122 22222 26776 667777777766
No 47
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=34.86 E-value=1.2e+02 Score=30.05 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 042529 108 GLATFLAAGLGFGAH 122 (456)
Q Consensus 108 i~GTliG~~la~~~~ 122 (456)
++|.++|++.+.++.
T Consensus 37 l~~A~~Gal~~~~~~ 51 (293)
T PF03419_consen 37 LLGAAIGALYSLLIF 51 (293)
T ss_pred HHHHHHHHHHHHHHh
Confidence 577888888777664
No 48
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=34.72 E-value=3e+02 Score=31.84 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 042529 194 STILIGGFTAVCVCILIFPV 213 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~ 213 (456)
..+.+|+++++++++++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999885
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.61 E-value=1.1e+02 Score=26.65 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-hhHHHHHHHHHHHHHHHH
Q 042529 194 STILIGGFTAVCVCILIFPVWA-GTDLHNLVANNIDKLANF 233 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~~a-~~~L~~~l~~~l~~la~~ 233 (456)
+..+||++|++++..+..+... ..+|.+.+.+.-..+.+|
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y 44 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY 44 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4567788888887777666532 234555555444444443
No 50
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=34.54 E-value=1.5e+02 Score=31.13 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042529 168 FILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCVCIL 209 (456)
Q Consensus 168 ~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v~~l 209 (456)
+++|..++ ..+..+..+.-.+.|.+.|++|.++|+.+..+
T Consensus 44 avlTVvvv--fe~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 44 AVLTVVVV--FEPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHhhhHhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444 34445666778888999999998888877654
No 51
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=33.03 E-value=4.7e+02 Score=26.57 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Q 042529 103 RGLNRGLATFLAAGLGFGAH-HLANLSGK 130 (456)
Q Consensus 103 k~~~Ri~GTliG~~la~~~~-~l~~~~g~ 130 (456)
+.+-|++=+++|+.+|+... .+...+|.
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~~ 31 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLGI 31 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcCc
Confidence 45667888899999999887 44444453
No 52
>PF15225 IL32: Interleukin 32
Probab=32.77 E-value=67 Score=26.09 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCCCCcc--ccCccccchhhhHhhhchhhHHHHHHHHHHHHHh
Q 042529 3 MASQPVD--NRKEGIISGAWHCLKSLPGKSMSKLIELAKKTKK 43 (456)
Q Consensus 3 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (456)
.|.|.++ +++..++.++-||+..+.-.++.|+.++...+++
T Consensus 25 ~EDp~te~~eP~Esf~dkvmR~FqamlqrLQ~ww~~vlAWVkk 67 (104)
T PF15225_consen 25 VEDPATEVWEPGESFCDKVMRWFQAMLQRLQTWWQAVLAWVKK 67 (104)
T ss_pred CCCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666 7888899999999999888888887776654443
No 53
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=31.78 E-value=2.3e+02 Score=21.48 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHHHHHHHHHHhh
Q 042529 28 GKSMSKLIELAKKTKKLGQDDPRRIIH-SLKVGLAITLVSLFYYFE 72 (456)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~d~~~~~~-alK~~lA~~l~sll~~~~ 72 (456)
+.++..+.+..|-+.+..++|...+.. +.-++++..+..+++|+.
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYII 49 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554455555678777754 444666677767676664
No 54
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.59 E-value=2.4e+02 Score=21.63 Aligned_cols=49 Identities=8% Similarity=0.103 Sum_probs=32.7
Q ss_pred hchhhHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHHHHHHHhhh
Q 042529 25 SLPGKSMSKLIELAKKTKKLGQDDPRRI-IHSLKVGLAITLVSLFYYFEP 73 (456)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~alK~~lA~~l~sll~~~~~ 73 (456)
.+++-++.-.++..+...+-.++|.+.+ +-+.+++++..+..++.|+.-
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vK 55 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVK 55 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566667887765 567888888888888877754
No 55
>PRK09776 putative diguanylate cyclase; Provisional
Probab=31.33 E-value=8e+02 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 042529 108 GLATFLAAGLGF 119 (456)
Q Consensus 108 i~GTliG~~la~ 119 (456)
.+++++.++++.
T Consensus 75 ~~~~~~~~~~~~ 86 (1092)
T PRK09776 75 TTINLVEAVVGA 86 (1092)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 56
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=30.00 E-value=5.4e+02 Score=25.24 Aligned_cols=37 Identities=8% Similarity=-0.116 Sum_probs=19.1
Q ss_pred HhHHhcccCchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 042529 88 TVVVVFEFSVGGTLS-RGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 88 Tvviv~~pt~G~t~~-k~~~Ri~GTliG~~la~~~~~l 124 (456)
-.++..-|....... +...+++--++|.++++.+...
T Consensus 92 GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~ 129 (257)
T PF04018_consen 92 GLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFL 129 (257)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHc
Confidence 344444454444432 3444556666666666666543
No 57
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=28.00 E-value=3.6e+02 Score=22.49 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 042529 194 STILIGGFTAVCVCIL 209 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~l 209 (456)
.++.+|.++|+++-.+
T Consensus 82 ~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 82 IETVIGLIIALLIYLL 97 (99)
T ss_pred ehhhhhHHHHHHHHHH
Confidence 4678899999887543
No 58
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=27.77 E-value=7.5e+02 Score=26.19 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHhhCCCCch-HHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHHHHHHHHHH
Q 042529 38 AKKTKKLGQDDPR-RIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRGLATFLAAG 116 (456)
Q Consensus 38 ~~~~~~~~~~d~~-~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri~GTliG~~ 116 (456)
...+++.+-.|++ ..+..+|.|+-.++...+.|.--.|.+-. .+..+--.-+-++.+....++..|+.-..+
T Consensus 206 i~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~-------~~~~~~~~~~g~~lL~~i~~~~~G~~G~~l 278 (427)
T PF05525_consen 206 INAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGAT-------SSGSFPDDINGAELLSQIANHLFGSAGQIL 278 (427)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------CcccccCCCCHHHHHHHHHHHHcChhHHHH
Confidence 3455666666554 45677777766555433333211111111 011112223567778999999999988888
Q ss_pred HHHHHHHHH
Q 042529 117 LGFGAHHLA 125 (456)
Q Consensus 117 la~~~~~l~ 125 (456)
+|+++..-+
T Consensus 279 l~iiv~lAC 287 (427)
T PF05525_consen 279 LGIIVFLAC 287 (427)
T ss_pred HHHHHHHHH
Confidence 888775443
No 59
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.73 E-value=1.9e+02 Score=26.87 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042529 106 NRGLATFLAAGLGFGAH 122 (456)
Q Consensus 106 ~Ri~GTliG~~la~~~~ 122 (456)
..+.++++|+.++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (199)
T PF10112_consen 6 RFIFRWILGVLIAAITF 22 (199)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544443
No 60
>PRK11660 putative transporter; Provisional
Probab=26.03 E-value=4.4e+02 Score=28.79 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 042529 193 VSTILIGGFTAVCVCILIF 211 (456)
Q Consensus 193 ~~~i~iGi~ia~~v~~li~ 211 (456)
+..+..|++++++++.+.+
T Consensus 423 ~~~~~~gi~~Gi~~s~~~~ 441 (568)
T PRK11660 423 LFDMVIAISVGIVLASLLF 441 (568)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3455556666666665443
No 61
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=25.24 E-value=2.4e+02 Score=28.51 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHH
Q 042529 300 TRNCAYRIEALNGYLNT----ETKIPEEIRGKMQDACINMSYEAVKALKELAFSIQTMTKPCSANSHITKSKIAAKNLKS 375 (456)
Q Consensus 300 lr~~~~~l~aL~~~~~~----~~~~p~~l~~~~~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~a~~~L~~ 375 (456)
+|++....+-+.+++.- ....|. ...+.|..++.++..+--.|+.++...+... .+..+..+..+-+++..
T Consensus 240 lRQlGAnfEL~a~~l~WL~~~g~~~~~----~aa~a~~~ias~Ak~~QFrLARAv~r~r~~~-~~~~Ld~~~~ay~~~~~ 314 (319)
T PF08893_consen 240 LRQLGANFELLASYLRWLDAQGFSGPA----EAAEACRTIASEAKVVQFRLARAVARGRFDD-CEDCLDPMEAAYDRAMD 314 (319)
T ss_pred HHhccccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHHHHHH
Confidence 56666666655555432 122332 2568889999988888889999988767654 33336667777777776
Q ss_pred HHh
Q 042529 376 LLS 378 (456)
Q Consensus 376 ~l~ 378 (456)
.+.
T Consensus 315 ~L~ 317 (319)
T PF08893_consen 315 GLA 317 (319)
T ss_pred HHh
Confidence 664
No 62
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=24.73 E-value=2.5e+02 Score=29.07 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=29.4
Q ss_pred cchHHHHHhHHhcc----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 81 SAMWAVLTVVVVFE----FSVGGTLSRGLNRGLATFLAAGLGFGAHHLAN 126 (456)
Q Consensus 81 ~~~Wa~iTvviv~~----pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~ 126 (456)
+++|..+..+++.. +-+.+--.|.+.-+.||++|.++.+.+.++..
T Consensus 177 ~~i~v~ii~~viit~~tL~~v~g~n~KTl~A~~~Ti~~~~ls~il~~~~i 226 (385)
T COG5438 177 NPILVFIILCVIITAITLFMVNGINKKTLAAFIGTILGTLLSIILAYISI 226 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78998877666543 22233335666667788877777777766543
No 63
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=24.61 E-value=3.4e+02 Score=24.92 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHH
Q 042529 49 PRRIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRG 108 (456)
Q Consensus 49 ~~~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri 108 (456)
....+||+.+.+...+..++.+..+...+.- ....+.+.+...+++..|+--.+...|.
T Consensus 21 ~e~~~YGle~il~~l~~~~~~l~i~~~~g~~-~~~li~~~~f~~lR~~aGG~Ha~t~~~C 79 (184)
T smart00793 21 LLKIKYGLEVILINLIKLIIVYGVALLLGVF-LETLIVHLSFLFLRRFAGGAHAKSSLLC 79 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhCCceecCCcHHH
Confidence 4467899988888776665555555443322 2223333444556666666655554443
No 64
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.59 E-value=78 Score=24.41 Aligned_cols=18 Identities=11% Similarity=-0.180 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042529 107 RGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 107 Ri~GTliG~~la~~~~~l 124 (456)
-+.||++|++++.++.++
T Consensus 52 W~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356778888777766543
No 65
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=24.45 E-value=5e+02 Score=23.02 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042529 108 GLATFLAAGLGFGAHHLANL 127 (456)
Q Consensus 108 i~GTliG~~la~~~~~l~~~ 127 (456)
++|+..|++.|.+-..+...
T Consensus 48 l~Gp~~G~ivg~ig~~l~dl 67 (169)
T PF07155_consen 48 LFGPKYGAIVGAIGDLLSDL 67 (169)
T ss_pred HHChHHHHHHHHHHHHHHHH
Confidence 46666666666555544443
No 66
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=24.27 E-value=4.7e+02 Score=26.06 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 042529 184 EVWHMAHMRVSTILIGGFTAVCVCILIFPVW 214 (456)
Q Consensus 184 ~~~~~a~~R~~~i~iGi~ia~~v~~li~P~~ 214 (456)
+-+..+..-+..+++|+.+|-.|+.- .|..
T Consensus 186 ~~it~aasilGl~vvGal~as~V~v~-~~l~ 215 (282)
T PRK11103 186 QKLTEGASILGLFVMGALVNKWTHVN-IPLV 215 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEE-EeEE
Confidence 44567888888999999999988853 3543
No 67
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=23.95 E-value=5e+02 Score=25.71 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 042529 184 EVWHMAHMRVSTILIGGFTAVCVCILIFPVW 214 (456)
Q Consensus 184 ~~~~~a~~R~~~i~iGi~ia~~v~~li~P~~ 214 (456)
+-...+..-+..+++|+.+|-.|+.- .|..
T Consensus 176 ~~it~~a~ilGl~vvGal~as~V~v~-~~l~ 205 (271)
T TIGR00828 176 QKLTEGASILGLFVMGALVAKWTHIN-VPLV 205 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEE-EeEE
Confidence 44566788888899999999988853 2443
No 68
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=23.85 E-value=4.2e+02 Score=27.62 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=18.9
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 93 FEFSVGGTLSRGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 93 ~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l 124 (456)
+..-+=.+..+++.|.+|-.+|-...+++.+-
T Consensus 365 l~~~YL~avl~~~~~g~~f~~~L~~lygvm~g 396 (443)
T COG4452 365 LNGIYLQAVLRGWRNGLLFFLALLLLYGVMFG 396 (443)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344455567777777776666666555443
No 69
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=23.73 E-value=8.8e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=17.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 93 FEFSVGGTLSRGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 93 ~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l 124 (456)
+-.-.|..+.+.++..+-+++|.++|++...+
T Consensus 54 ~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l 85 (459)
T PF10337_consen 54 VIVPPGRPRGKFLEAMILLLLGVCLGWAWGLL 85 (459)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666555555555433
No 70
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.69 E-value=7e+02 Score=24.40 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q 042529 299 LTRNCAYRIEALNGYLNTET 318 (456)
Q Consensus 299 ~lr~~~~~l~aL~~~~~~~~ 318 (456)
.++.++..++.+..++....
T Consensus 214 ~l~~~a~~l~~ia~ai~~~~ 233 (284)
T PF12805_consen 214 LLEQLAQALRQIAQAILRGR 233 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 35566666666666655443
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=23.45 E-value=3.8e+02 Score=31.14 Aligned_cols=13 Identities=0% Similarity=-0.048 Sum_probs=6.9
Q ss_pred CceeEEecCCCCC
Q 042529 442 PEHVITIHQPSSL 454 (456)
Q Consensus 442 ~~~~~~~~~~~~~ 454 (456)
+.+.|+|.+.++|
T Consensus 809 ~~v~I~V~D~G~G 821 (895)
T PRK10490 809 ERLQLDVWDNGPG 821 (895)
T ss_pred CEEEEEEEECCCC
Confidence 3556666554443
No 72
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=23.32 E-value=83 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042529 108 GLATFLAAGLGFGAHHL 124 (456)
Q Consensus 108 i~GTliG~~la~~~~~l 124 (456)
++|+++|+++|.+...+
T Consensus 8 l~G~liGgiiGa~aaLL 24 (115)
T COG4980 8 LFGILIGGIIGAAAALL 24 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888888888877655
No 73
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.72 E-value=3.1e+02 Score=19.91 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042529 105 LNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 105 ~~Ri~GTliG~~la~~~~~l 124 (456)
..|++|.++|.++|+++..+
T Consensus 8 ~~~iiG~~~G~ila~l~l~~ 27 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILTF 27 (51)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34667777777777666544
No 74
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.66 E-value=8.4e+02 Score=25.00 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Q 042529 186 WHMAHMRVSTILIGGFTAVCVCILIFPVWAGTDLHNLVANNIDKL 230 (456)
Q Consensus 186 ~~~a~~R~~~i~iGi~ia~~v~~li~P~~a~~~L~~~l~~~l~~l 230 (456)
..-.+.|+..+++|..+++++.. |=.+...++++..+..+..+
T Consensus 116 nTd~ll~lg~i~lall~~ilia~--~l~~~~~qlk~~~a~ll~lL 158 (405)
T COG4393 116 NTDSLLRLGAILLALLTIILIAL--SLQKVYFQLKSSLAPLLALL 158 (405)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhhHHHHH
Confidence 35578899999999999988764 33455555555554444433
No 75
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=22.65 E-value=5.5e+02 Score=24.16 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHHhcccCchhHHHHHHHHH
Q 042529 51 RIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVVVFEFSVGGTLSRGLNRG 108 (456)
Q Consensus 51 ~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvviv~~pt~G~t~~k~~~Ri 108 (456)
..++|+.+.+......++.+..+...+.- ......+.+...++...|+.-.+...+.
T Consensus 35 ~i~YGl~~il~~i~k~i~il~i~~i~g~~-~~tli~~l~f~~lR~~aGG~Ha~s~~~C 91 (210)
T PRK01100 35 KVKYGLEIILINVSKFAIVYLIALVTGLL-LQTVTVHLSFLWLRRYSFGLHATNSINC 91 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHHHhccCceecCCCcHH
Confidence 46888888777666555455444433321 2222333344445566665555544443
No 76
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=22.46 E-value=7.9e+02 Score=24.59 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042529 101 LSRGLNRGLATFLAAGLGFGA 121 (456)
Q Consensus 101 ~~k~~~Ri~GTliG~~la~~~ 121 (456)
....+.|++++..++......
T Consensus 103 ~~~~l~rfLs~~~~~~~l~~~ 123 (326)
T PF14351_consen 103 MPDRLLRFLSAFLAAIALIGL 123 (326)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344788888666555444443
No 77
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=21.98 E-value=7.5e+02 Score=28.63 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 042529 167 IFILTFCLISVSGYRDDEVWHMAHMRVSTILIGGFTAVCV 206 (456)
Q Consensus 167 i~~lT~~lv~l~~~~~~~~~~~a~~R~~~i~iGi~ia~~v 206 (456)
+++-|..+.++....+...+---..|+.+=+.|..|+++.
T Consensus 450 VglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iF 489 (876)
T KOG1172|consen 450 VGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIF 489 (876)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444443344455556778888888888888764
No 78
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=21.59 E-value=3.2e+02 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 042529 397 ASLLVDAVACTEKIAESVQELASIAKFKS 425 (456)
Q Consensus 397 asllie~~~~le~l~~~v~~L~~~~~F~~ 425 (456)
+..++.++..+|++.|...+++..+.+..
T Consensus 78 ~~~~~~i~~~lErigD~~~~ia~~~~~~~ 106 (212)
T TIGR02135 78 IISIIKISSDLERIGDYAVNIAKRALRLK 106 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556889999999999988988777765
No 79
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.56 E-value=1.3e+02 Score=20.28 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.0
Q ss_pred chhHH-HHHHHHHHHHHHHHHHHHHH
Q 042529 97 VGGTL-SRGLNRGLATFLAAGLGFGA 121 (456)
Q Consensus 97 ~G~t~-~k~~~Ri~GTliG~~la~~~ 121 (456)
-|.|+ +||++.++|.++-.++|+++
T Consensus 11 ~~ntltkrgfykligclvvmfigiiv 36 (41)
T PF13121_consen 11 KDNTLTKRGFYKLIGCLVVMFIGIIV 36 (41)
T ss_pred CCCeeehhhHHHHHHHHHHHHHHHHh
Confidence 35555 78999999988887777665
No 80
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.23 E-value=7.9e+02 Score=24.61 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHhHH-hcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042529 51 RIIHSLKVGLAITLVSLFYYFEPLYDGFGVSAMWAVLTVVV-VFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHLANLS 128 (456)
Q Consensus 51 ~~~~alK~~lA~~l~sll~~~~~~~~~l~~~~~Wa~iTvvi-v~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l~~~~ 128 (456)
|+.+++|.++-..+...+ . =+++.+.+ ..|...|.-+.--.+|.+-+--|.-.-+++..+++.+
T Consensus 135 RliygfRiSvLfgL~lT~--~------------SaliGv~~GA~qGyfgg~vdL~~QR~IEvws~mP~lyllii~as~~ 199 (341)
T COG4239 135 RLIYGFRISVLFGLSLTL--I------------SALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIF 199 (341)
T ss_pred HHHHHHHHHHHHHHHHHH--H------------HHHHHHHHHHHhhhhccchHHHHhhHHHHHhcCcHHHHHHHHHHHh
Confidence 578888887766653211 1 02222222 2456667777777788877776665555555444433
No 81
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=21.21 E-value=3.9e+02 Score=20.55 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=27.5
Q ss_pred hchhhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 25 SLPGKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+.++.+++......|-+....++|...+.-..| +++...+..++.|.+
T Consensus 6 ~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI 54 (65)
T COG2443 6 DKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFII 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655555444444444567666655555 566666666666654
No 82
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.05 E-value=8e+02 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 042529 184 EVWHMAHMRVSTILIGGFTAVCVCI 208 (456)
Q Consensus 184 ~~~~~a~~R~~~i~iGi~ia~~v~~ 208 (456)
+-+..+..-+..+++|..++..|+.
T Consensus 174 ~~i~~~asilGl~vvGal~as~V~v 198 (264)
T PF03613_consen 174 QKITEAASILGLMVVGALIASYVNV 198 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeEEE
Confidence 3456677788888999999998885
No 83
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.61 E-value=4.8e+02 Score=24.27 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042529 188 MAHMRVSTILIGGFTAV 204 (456)
Q Consensus 188 ~a~~R~~~i~iGi~ia~ 204 (456)
-....+..|+++++.++
T Consensus 140 ~~~~ti~yIiL~iLf~~ 156 (189)
T PF05313_consen 140 SGAYTISYIILAILFCI 156 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555655555544
No 84
>COG4035 Predicted membrane protein [Function unknown]
Probab=20.45 E-value=1.1e+02 Score=25.15 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=24.8
Q ss_pred CCCCcchHHH----HHhHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042529 77 GFGVSAMWAV----LTVVVVFEFSVGGTLSRGLNRGLATFLAAGLGFGAHHL 124 (456)
Q Consensus 77 ~l~~~~~Wa~----iTvviv~~pt~G~t~~k~~~Ri~GTliG~~la~~~~~l 124 (456)
.++ .+.|.. +..++-|.|..|.. -|+.|.++|.++|..
T Consensus 63 ~v~-~~~~~ag~flig~v~gMRPGYGR~---------Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 63 SVP-VPLYMAGCFLIGFVLGMRPGYGRV---------ETVVGTFLAVLLWLY 104 (108)
T ss_pred CCc-hHHHHHHHHHHHHhhccCCCCcee---------ehhHHHHHHHHHHHh
Confidence 344 677866 44455588988863 466777777777644
No 85
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=20.26 E-value=6e+02 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 042529 191 MRVSTILIGGFTAVCVCILIF 211 (456)
Q Consensus 191 ~R~~~i~iGi~ia~~v~~li~ 211 (456)
.=+.++..|+.++++++.+.+
T Consensus 390 tv~~~l~~GV~vGi~ls~~~~ 410 (554)
T COG0659 390 TVFFDLVIGVVVGILLACLLF 410 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777775544
No 86
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=20.06 E-value=1e+03 Score=25.09 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 042529 186 WHMAHMRVSTILIGGFTAVCVCILI 210 (456)
Q Consensus 186 ~~~a~~R~~~i~iGi~ia~~v~~li 210 (456)
+.-...|...+++|++++.++..+.
T Consensus 189 ~~~g~~~~~svLiGiv~G~v~a~~~ 213 (433)
T PRK11412 189 FLPQRIARYSLLVGTIVGWILWAFC 213 (433)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456779999999999999985533
Done!