Query 042529
Match_columns 456
No_of_seqs 340 out of 1492
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 39.7 1E+02 0.0034 23.6 6.8 50 23-72 18-68 (80)
2 3mp7_B Preprotein translocase 36.7 48 0.0016 24.0 4.4 45 28-72 6-51 (61)
3 4dx5_A Acriflavine resistance 35.5 4.3E+02 0.015 29.6 14.4 20 194-213 1005-1024(1057)
4 3ne5_A Cation efflux system pr 34.7 2.4E+02 0.0081 31.7 12.1 21 193-213 1020-1040(1054)
5 1rh5_B Preprotein translocase 29.3 70 0.0024 24.1 4.4 47 26-72 8-55 (74)
6 2wwb_B SEC61gamma, protein tra 28.0 99 0.0034 22.9 4.9 47 26-72 7-54 (68)
7 1t72_A Phosphate transport sys 24.7 3.3E+02 0.011 23.9 9.2 29 396-424 183-211 (227)
8 2i0m_A Phosphate transport sys 22.5 3.8E+02 0.013 23.2 11.2 123 293-423 83-206 (216)
9 3fxd_A Protein ICMQ; helix bun 19.8 2.2E+02 0.0075 20.2 5.1 26 364-389 8-33 (57)
10 4dx5_A Acriflavine resistance 15.9 1.1E+03 0.039 26.0 15.0 20 194-213 472-491 (1057)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=39.73 E-value=1e+02 Score=23.61 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=31.2
Q ss_pred hhhchhhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 23 LKSLPGKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+..+.+.++..+.+..|-+.+..++|...+....| ++++..+..+++|+.
T Consensus 18 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 18 VEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp ---CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666766666666566666688887755444 666777777777764
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=36.65 E-value=48 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 28 GKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+.++..+.+..|-+.+..++|...+....| +++...+..+++|+.
T Consensus 6 e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 6 ERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp --CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455556788887755555 555666666666654
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=35.54 E-value=4.3e+02 Score=29.56 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 042529 194 STILIGGFTAVCVCILIFPV 213 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~ 213 (456)
..+++|+++++++++++.|.
T Consensus 1005 ~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1005 TGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999888885
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=34.70 E-value=2.4e+02 Score=31.66 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 042529 193 VSTILIGGFTAVCVCILIFPV 213 (456)
Q Consensus 193 ~~~i~iGi~ia~~v~~li~P~ 213 (456)
-..+++|+++++++++++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 356788889999999998885
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=29.35 E-value=70 Score=24.11 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 26 LPGKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+.+.++..+.+..|-+.+..++|...+....| ++++..+.++++|+.
T Consensus 8 ~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 8 KIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp ----CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555556688888755554 566666666666654
No 6
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=28.05 E-value=99 Score=22.87 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHHHHHhh
Q 042529 26 LPGKSMSKLIELAKKTKKLGQDDPRRIIHSLK-VGLAITLVSLFYYFE 72 (456)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~l~sll~~~~ 72 (456)
+.+.++..+.+..|-+.+..++|...+....| ++++..+..+++|+.
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666788887755554 566666666666664
No 7
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=24.70 E-value=3.3e+02 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042529 396 VASLLVDAVACTEKIAESVQELASIAKFK 424 (456)
Q Consensus 396 ~asllie~~~~le~l~~~v~~L~~~~~F~ 424 (456)
.+..++++...+|++.|.....+...-|.
T Consensus 183 ~~~~~~~i~~~lERIgDha~nIae~v~~~ 211 (227)
T 1t72_A 183 RAMHLSFVARHYERIADHAENVAEAAIYL 211 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777776666666666555443
No 8
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=22.54 E-value=3.8e+02 Score=23.25 Aligned_cols=123 Identities=8% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH
Q 042529 293 YLKIGSLTRNCAYRIEALNGYLNTETK-IPEEIRGKMQDACINMSYEAVKALKELAFSIQTMTKPCSANSHITKSKIAAK 371 (456)
Q Consensus 293 y~~i~~~lr~~~~~l~aL~~~~~~~~~-~p~~l~~~~~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~a~~ 371 (456)
+.++..-+.+.++....+......... .++.. .+++..+...+.+.+.....++.+.... ....+........
T Consensus 83 ~l~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~----~~~l~~m~~~v~~~l~~a~~a~~~~d~~--~a~~v~~~d~~iD 156 (216)
T 2i0m_A 83 IMSSCSDLERMGDHMAGIAKAVLQLKENQLAPD----EEQLHQMGKLSLSMLADLLVAFPLHQAS--KAISIAQKDEQID 156 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSSCCC------CHHHHHHHHHHHHHHHHHHHHGGGTCHH--HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCchH----HHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHH
Confidence 445555556666555554443322111 11111 1345566666666666666666643211 0001111222233
Q ss_pred HHHHHHhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 042529 372 NLKSLLSTSLCKETEILDLIPAVTVASLLVDAVACTEKIAESVQELASIAKF 423 (456)
Q Consensus 372 ~L~~~l~~~~~~~~~~~~~~~~~~~asllie~~~~le~l~~~v~~L~~~~~F 423 (456)
++...+..... .+..+...-..-+..++++...+|++.|.....++..-|
T Consensus 157 ~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~~~lERI~Dha~nIae~v~~ 206 (216)
T 2i0m_A 157 QYYYALSKEII--GLMKDQETSIPNGTQYLYIIGHLERFADYIANICERLVY 206 (216)
T ss_dssp HHHHHHHHHHH--HTTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333221100 000000111123334567777777777776666654433
No 9
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=19.80 E-value=2.2e+02 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHhccccccchhhh
Q 042529 364 TKSKIAAKNLKSLLSTSLCKETEILD 389 (456)
Q Consensus 364 ~~~~~a~~~L~~~l~~~~~~~~~~~~ 389 (456)
.+..+-++.|+.+|.+.||+...++.
T Consensus 8 eq~~aILkaLdeaIe~GPWe~SNFLR 33 (57)
T 3fxd_A 8 EQKETILKALNDAIEKGPWDKSNFLR 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34566778999999999997766654
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=15.93 E-value=1.1e+03 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 042529 194 STILIGGFTAVCVCILIFPV 213 (456)
Q Consensus 194 ~~i~iGi~ia~~v~~li~P~ 213 (456)
..+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888874
Done!