Query 042529
Match_columns 456
No_of_seqs 340 out of 1492
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 12:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042529.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042529hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcta1 a.7.12.1 (A:9-107) Hyp 32.4 80 0.0058 22.5 7.8 24 398-421 71-94 (99)
2 d1sumb_ a.7.12.1 (B:) PhoU hom 25.7 1.6E+02 0.012 23.9 9.8 29 396-424 178-206 (225)
3 d1xwma_ a.7.12.1 (A:) Phosphat 21.9 1.8E+02 0.013 23.1 11.1 27 397-423 177-203 (212)
4 d1u5ta1 a.4.5.54 (A:20-164) Va 13.7 1.8E+02 0.013 22.7 6.2 41 296-336 13-53 (145)
5 d1t72a_ a.7.12.1 (A:) Phosphat 13.3 3E+02 0.022 21.8 9.2 22 399-420 186-207 (215)
6 d1t98a2 a.47.6.1 (A:119-281) C 11.9 2.4E+02 0.018 22.0 6.3 19 335-353 82-100 (163)
7 d1g5za_ a.24.12.1 (A:) Outer s 11.7 96 0.007 24.7 3.9 21 401-421 17-37 (164)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.5 2.2E+02 0.016 24.1 6.0 9 113-121 8-16 (248)
9 d1t72a_ a.7.12.1 (A:) Phosphat 8.5 2.7E+02 0.02 22.0 6.1 27 395-421 82-108 (215)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.3 6.8E+02 0.049 21.9 9.2 28 187-214 73-100 (405)
No 1
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=32.44 E-value=80 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 042529 398 SLLVDAVACTEKIAESVQELASIA 421 (456)
Q Consensus 398 sllie~~~~le~l~~~v~~L~~~~ 421 (456)
..++.+...+|++.|...+++...
T Consensus 71 ~~~~~i~~~lERIgDha~nIae~v 94 (99)
T d1vcta1 71 ITILQIANAIEDISNAAGDLAKMV 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788889999999888887643
No 2
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=25.66 E-value=1.6e+02 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042529 396 VASLLVDAVACTEKIAESVQELASIAKFK 424 (456)
Q Consensus 396 ~asllie~~~~le~l~~~v~~L~~~~~F~ 424 (456)
-+..++.+...+|++.|.....++..-|-
T Consensus 178 ~~~~~~~i~~~lERIgDh~~nIaE~v~y~ 206 (225)
T d1sumb_ 178 RALLLLEIAGNIEIIADYATNIVEVSVYM 206 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456688888888888887777655554
No 3
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.86 E-value=1.8e+02 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 042529 397 ASLLVDAVACTEKIAESVQELASIAKF 423 (456)
Q Consensus 397 asllie~~~~le~l~~~v~~L~~~~~F 423 (456)
+..++.+...+|++.|.....+...-|
T Consensus 177 ~~~~~~i~r~LERIgDh~~nIae~vif 203 (212)
T d1xwma_ 177 MNVLALVARYIERTADHATNIAEHLVY 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888777765544
No 4
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.72 E-value=1.8e+02 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 042529 296 IGSLTRNCAYRIEALNGYLNTETKIPEEIRGKMQDACINMS 336 (456)
Q Consensus 296 i~~~lr~~~~~l~aL~~~~~~~~~~p~~l~~~~~~~~~~l~ 336 (456)
+...+..+...|+.+..-..+++.-.+++|..|++-|..++
T Consensus 13 l~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iG 53 (145)
T d1u5ta1 13 LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIG 53 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhC
Confidence 33334444445555555556677777889999988887764
No 5
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=13.26 E-value=3e+02 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 042529 399 LLVDAVACTEKIAESVQELASI 420 (456)
Q Consensus 399 llie~~~~le~l~~~v~~L~~~ 420 (456)
.++.+...+|++.|.....++.
T Consensus 186 ~~~~i~r~lERigDh~~nIae~ 207 (215)
T d1t72a_ 186 HLSFVARHYERIADHAENVAEA 207 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788788777766654
No 6
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.90 E-value=2.4e+02 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 042529 335 MSYEAVKALKELAFSIQTM 353 (456)
Q Consensus 335 l~~~~~~~L~~La~sl~~~ 353 (456)
..+.|.++|.+-++.++..
T Consensus 82 AI~~Ce~LL~eTs~tLREL 100 (163)
T d1t98a2 82 AISSCELLLSETSGTLREL 100 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 3444555555555555543
No 7
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=11.73 E-value=96 Score=24.74 Aligned_cols=21 Identities=43% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 042529 401 VDAVACTEKIAESVQELASIA 421 (456)
Q Consensus 401 ie~~~~le~l~~~v~~L~~~~ 421 (456)
..-|.++|.|+.|++||+..|
T Consensus 17 v~aVKEVetLv~SIDELA~KA 37 (164)
T d1g5za_ 17 VLAVKEVETLLASIDELATKA 37 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 466888999999999999644
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.47 E-value=2.2e+02 Score=24.06 Aligned_cols=9 Identities=11% Similarity=-0.392 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 042529 113 LAAGLGFGA 121 (456)
Q Consensus 113 iG~~la~~~ 121 (456)
+|.+-++.+
T Consensus 8 l~l~~a~~~ 16 (248)
T d2r6gf1 8 LGLLGLLVG 16 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 9
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=8.52 E-value=2.7e+02 Score=22.04 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042529 395 TVASLLVDAVACTEKIAESVQELASIA 421 (456)
Q Consensus 395 ~~asllie~~~~le~l~~~v~~L~~~~ 421 (456)
-++...+.++.++|++.|...+++..+
T Consensus 82 r~~~~~~~i~~~lERIgD~a~~ia~~~ 108 (215)
T d1t72a_ 82 RMIMGIYKIVSDLERMGDEAENIAERA 108 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888888888888887655
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.35 E-value=6.8e+02 Score=21.89 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 042529 187 HMAHMRVSTILIGGFTAVCVCILIFPVW 214 (456)
Q Consensus 187 ~~a~~R~~~i~iGi~ia~~v~~li~P~~ 214 (456)
....+=+..+++++++++++..++.|..
T Consensus 73 ~ti~~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 73 KIVVYYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455556778888899999998888865
Done!