BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042534
         (447 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
           Trypanosoma Brucei.
 pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
           Trypanosoma Brucei.
 pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
          Length = 487

 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 216/376 (57%), Gaps = 13/376 (3%)

Query: 68  AGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS 127
           A  R +I F P  T   IVTCGG+CPGLN VIR + +    +Y V++++G + GY G   
Sbjct: 85  AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144

Query: 128 T-TRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRG 186
             ++  + L+   V   H  GGT+L +SRG  D  ++VD ++    N ++ +GGDGT RG
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204

Query: 187 AVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVN 246
           A+ I  E +RR +++ V G+PKT+DND+    R+FGFQTAVE A QAI AA+ EA SA  
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264

Query: 247 GIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVL 306
           G+G+VKLMGR +G IA  A ++S   + CL+PE       +  ++  L+ R   +   V+
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321

Query: 307 VVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARD---HPGELFTVKY 363
           +VAEG GQ+        +   D SGN   +D+G  L  ++K +   +   +P    TVKY
Sbjct: 322 IVAEGFGQDW----GRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDS--TVKY 375

Query: 364 IDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATN 423
           IDP+YMIRA P +A D L+C  LA  A+H  MAG TG +    + NY  +P++       
Sbjct: 376 IDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRR 435

Query: 424 AVNTKDHKWAWVRTVT 439
            ++ +   W  VR +T
Sbjct: 436 VLDLRGQLWRQVREIT 451


>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
           Lactobacillus Delbrueckii
          Length = 319

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 60/338 (17%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           R  I+T GG  PG+N  +R   V    +    ++ GI+ G+ G  +    PL    + V 
Sbjct: 3   RIGILTSGGDAPGMNAAVR--AVTRVAIANGLEVFGIRYGFAGLVAGDIFPL--ESEDVA 58

Query: 142 GWHKLGGTVLETSR---GGFDLHQI--VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
               + GT L ++R      +  Q+  ++ ++ +  + V +IGGDG+  GA+++     R
Sbjct: 59  HLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQL----TR 114

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
              N   +G+P T+DND+   D + G+ TA   A  AI     +  S+ + + +V +MGR
Sbjct: 115 HGFNS--IGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIR-DTASSHHRVFIVNVMGR 171

Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK---ENG--HAVLVVAEG 311
           + G IA+   ++    D  +IPE  +        VE + NRLK   E+G  H ++VVAEG
Sbjct: 172 NCGDIAMRVGVAC-GADAIVIPERPYD-------VEEIANRLKQAQESGKDHGLVVVAEG 223

Query: 312 AGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIR 371
                   TA Q                     ELKK+         F V+     +M R
Sbjct: 224 V------MTADQ------------------FMAELKKYGD-------FDVRANVLGHMQR 252

Query: 372 AVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGN 409
                 +D +  + L   A+H ++ G  G   G  NG 
Sbjct: 253 GGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK 290


>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
 pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
          Length = 555

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 20/248 (8%)

Query: 79  KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPK 138
           K     I+  GG  PG + VI  +   + +     ++ G + G  G     +  + L   
Sbjct: 71  KALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK--IELTES 128

Query: 139 MVRGWHKLGG-TVLETSRGGFD----LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE 193
           ++  +   GG  ++ + R   +     ++ +   + N  N + IIGGD +   A  + + 
Sbjct: 129 LINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEY 188

Query: 194 IQRRKINVGVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLV 251
            ++   N+ V+G+PKT+D D+    I+ SFGF +A ++  + I     +A S       V
Sbjct: 189 FKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFV 248

Query: 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDN--------RLKENGH 303
           KLMGRS  H+AL   L +    C +  E+   L  K  L E +D          L  +  
Sbjct: 249 KLMGRSASHVALECALKTHPNICIVSEEV---LAKKKTLSEIIDEMVSVILKRSLNGDNF 305

Query: 304 AVLVVAEG 311
            V++V EG
Sbjct: 306 GVVIVPEG 313


>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
 pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
           Bacillus Stearothermophilus Bound With
           Fructose-6-Phosphate
          Length = 319

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 19/240 (7%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           R  ++T GG  PG+N  IR +V     +Y   ++ G+  GY G  +     L +    V 
Sbjct: 3   RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VG 58

Query: 142 GWHKLGGTVLETSRG-GFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
                GGT+L T+R   F   +     ++ ++ +    + +IGGDG+ +GA ++ +    
Sbjct: 59  DIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH--- 115

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
                  VG+P T+DND+   D + GF TA+     AI      A S      ++++MGR
Sbjct: 116 ---GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGR 171

Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNM 316
             G IAL++ L+    +  LIPE ++ +      ++    R K+  H++++VAEG G  +
Sbjct: 172 HAGDIALYSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVGSGV 228


>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
 pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
          Length = 319

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 19/240 (7%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           R  ++T GG  PG+N  IR +V     +Y   ++ G+  GY G  +     L +    V 
Sbjct: 3   RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VG 58

Query: 142 GWHKLGGTVLETSRG-GFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
                GGT+L T+R   F   +     ++ ++ +    + +IGGDG+ +GA ++ +    
Sbjct: 59  DIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH--- 115

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
                  VG+P T+DND+   D + GF TA+     AI      A S      ++++MGR
Sbjct: 116 ---GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171

Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNM 316
             G IAL + L+    +  LIPE ++ +      ++    R K+  H++++VAEG G  +
Sbjct: 172 HAGDIALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVGSGV 228


>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
 pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
 pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
 pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
 pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
           Phosphofructokinase
 pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
           Phosphofructokinase
 pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
           Phosphofructokinase
 pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
           Phosphofructokinase
          Length = 319

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 19/240 (7%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           R  ++T GG  PG+N  IR +V     +Y   ++ G+  GY G  +     L +    V 
Sbjct: 3   RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VG 58

Query: 142 GWHKLGGTVLETSRG-GFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
                GGT+L T+R   F   +     ++ ++ +    + +IGGDG+ +GA ++ +    
Sbjct: 59  DIIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH--- 115

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
                  VG+P T+DND+   D + GF TA+     AI      A S      ++++MGR
Sbjct: 116 ---GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171

Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNM 316
             G IAL + L+    +  LIPE ++ +      ++    R K+  H++++VAEG G  +
Sbjct: 172 HAGDIALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKK--HSIIIVAEGVGSGV 228


>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
           From Escherichia Coli With Its Reaction Products
 pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
           From Escherichia Coli With Its Reaction Products
 pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
           From Escherichia Coli
 pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
           From Escherichia Coli
 pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
           From Escherichia Coli
 pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
           From Escherichia Coli
          Length = 320

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 21/235 (8%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           +  ++T GG  PG+N  IR +V     L    +++GI  GY G Y      + L+   V 
Sbjct: 4   KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYED--RMVQLDRYSVS 59

Query: 142 GWHKLGGTVLETSR-GGFDLHQI----VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
                GGT L ++R   F    I    ++ ++    + + +IGGDG+  GA+ +      
Sbjct: 60  DMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRL------ 113

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
            ++    +G+P T+DND+   D + GF TA+    +AI     +  S+   I +V++MGR
Sbjct: 114 TEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGR 172

Query: 257 STGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLV-EFLDNRLKENGHAVLVVAE 310
             G + L A ++    +  ++PE+EF  E    LV E      K   HA++ + E
Sbjct: 173 YCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITE 223


>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
 pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
          Length = 319

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 33/247 (13%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
           R  ++T GG  PG+N  +R +V     +Y   ++ GI  GY G  S     L L    V 
Sbjct: 3   RIGVLTSGGDSPGMNAAVRAVV--RKAIYHDVEVYGIYNGYAGLISGKIEKLELGS--VG 58

Query: 142 GWHKLGGTVLETSRGGFDLHQIVDAIQTNAFN-------QVYIIGGDGTMRGAVEIFDEI 194
                GGT L T+R      + V+  +    N        + +IGGDG+  GA ++ +  
Sbjct: 59  DIIHRGGTKLYTAR--CPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH- 115

Query: 195 QRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLM 254
                    VG+P T+DND+   D + GF TA+     AI      A S      ++++M
Sbjct: 116 -----GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVM 169

Query: 255 GRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK---ENG--HAVLVVA 309
           GR  G IAL A L+    +  LIPE ++ +       E +  RLK   E G  H++++VA
Sbjct: 170 GRHAGDIALWAGLAG-GAESILIPEADYDMH------EII-ARLKRGHERGKKHSIIIVA 221

Query: 310 EGAGQNM 316
           EG G  +
Sbjct: 222 EGVGSGV 228


>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 787

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 31/274 (11%)

Query: 79  KNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNP 137
           K  + A++T GG  PG+N  +R +V  G+   +G   +  +  GY G     +    +  
Sbjct: 4   KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH--FGC-DVFAVYEGYEGLLRGGKYLKKMAW 60

Query: 138 KMVRGWHKLGGTVLETSRG-----GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGA----- 187
           + VRGW   GGT++ T+R           Q    + +   + + + GGDG++ GA     
Sbjct: 61  EDVRGWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRH 120

Query: 188 --VEIFDEI------QRRKI----NVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235
               + DE+       + ++    N+ +VG+  ++DND+   D + G  +A+E   + + 
Sbjct: 121 EWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVD 180

Query: 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF-YLEGKGGLVEFL 294
                A+S      +V++MGR  G +AL A +++   D   IPE    + + +  L E  
Sbjct: 181 YIDATAKSHSRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVC 238

Query: 295 D-NRLKENGHAVLVVAEGAGQNMI-PRTAAQTEE 326
             +R K   +  ++VAEGA  + + P TA   ++
Sbjct: 239 QRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKD 272



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 140 VRGWHKLGGTVLETSR--GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD-EIQR 196
           V  WH LGG+ + T+R     DL  I    Q N  + + I+GG    R   ++ D   Q 
Sbjct: 450 VENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQH 509

Query: 197 RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGR 256
              N+ +  IP TV N+V   + S G  T +             A +    + + ++ G 
Sbjct: 510 PIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGG 569

Query: 257 STGHIA 262
            +G+IA
Sbjct: 570 HSGYIA 575


>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
          Length = 989

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 33/282 (11%)

Query: 72  KQIFFEPKNTRAAIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTR 130
           +Q+  E    + AI+T GG  PG+N  +R +   G++  YG + +     GY G      
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCK-VYACYEGYTGLVKGGD 258

Query: 131 NPLVLNPKMVRGWHKLGGTVLETSRGG-----FDLHQIVDAIQTNAFNQVYIIGGDGTMR 185
               L  + VRG   +GGT++ T+R       +   Q    + +N  + + + GGDG++ 
Sbjct: 259 MLKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLT 318

Query: 186 GAVEIF--------------DEIQRRKI----NVGVVGIPKTVDNDVGIIDRSFGFQTAV 227
           GA ++F              D+I + +     N+ +VG+  ++DND+   D + G  +++
Sbjct: 319 GA-DLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSL 377

Query: 228 EMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGK 287
           E   + +      A S      +V++MGR  G + L + +++   D   IPE        
Sbjct: 378 ERIIELVDYIDATAASHSRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNW 435

Query: 288 GGLVEFLDNRLKENGH--AVLVVAEGAGQNMI-PRTAAQTEE 326
              ++ +  R +E G     ++VAEGA  + + P T+ + ++
Sbjct: 436 KDDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNPITSEEVKD 477



 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 12/200 (6%)

Query: 75  FFEPKNTR--AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF--YSTTR 130
           +  P+++R   AI+  G     LN   R  V  L  L    ++  I+ G+ G   +   R
Sbjct: 591 YLVPESSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVR 648

Query: 131 NPLVLNPKMVRGWHKLGGTVLETSRG--GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV 188
               LN   V  WH  GG+ + T+R     D+  +    Q   F+ + IIGG        
Sbjct: 649 E---LNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALY 705

Query: 189 EI-FDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNG 247
           E+     Q    N+ +  +P TV N+V   + S G  T +        A    A ++   
Sbjct: 706 ELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRR 765

Query: 248 IGLVKLMGRSTGHIALHATL 267
             +V++ G  +G++A +A L
Sbjct: 766 TFVVEVQGGYSGYLASYAGL 785


>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
          Length = 941

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 121/288 (42%), Gaps = 32/288 (11%)

Query: 66  HRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGF 125
           +RA    +    P      ++T GG  PG+N  +R +V     +Y   ++  I  GY G 
Sbjct: 167 YRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGL 224

Query: 126 YSTTRNPLVLNP-KMVRGWHKLGGTVLETSRG------GFDLHQIVDAIQTNAFNQVYII 178
                  +       VRGW   GGT + T+R          L    + I     + + + 
Sbjct: 225 VRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDM-GIDALIVC 283

Query: 179 GGDGTMRGAVEIFDE--------IQRRKI---------NVGVVGIPKTVDNDVGIIDRSF 221
           GGDG++ GA     E        +Q  +I         N+ + G   ++DND+   D + 
Sbjct: 284 GGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATI 343

Query: 222 GFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEM- 280
           G  ++++   +AI      A S      +V++MGR  G + L A L++   D  LIPE  
Sbjct: 344 GAFSSLDRICRAIDYIDATANSHSRAF-IVEVMGRHCGWLGLLAGLAT-SADYILIPEKP 401

Query: 281 EFYLEGKGGLVEFL-DNRLKENGHAVLVVAEGAGQN-MIPRTAAQTEE 326
               E +  + + +  +R +     +++VAEGA  N + P +  Q ++
Sbjct: 402 ASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPISCDQVKD 449



 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 79  KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLV--LN 136
           K  + AI+  G    G+N+ +  +       Y + +     A + GF    R+  V  +N
Sbjct: 570 KRKKIAIINVGAPAGGMNSAVYSMAT-----YCMSRGHVPYAIHNGFSGLARHESVRSIN 624

Query: 137 PKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDE 193
              + GW  LGG+ + T+R      D+  I    +   F+ + ++GG      A     +
Sbjct: 625 WLDIEGWGSLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGG----FEAFISLHQ 680

Query: 194 IQRRKIN-----VGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI 248
           ++R +IN     + +V IP T+ N+V   + S G  T +    +        A +  N +
Sbjct: 681 LERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRV 740

Query: 249 GLVKLMGRSTGHIALHATLS 268
            +V++ G ++G+IA HA L+
Sbjct: 741 FVVEVQGGNSGYIATHAQLA 760


>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 766

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 41/260 (15%)

Query: 84  AIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNP---KMV 140
           A++T GG  PG+N+ +R +V       G R  + +  GY G       P  +     + V
Sbjct: 7   AVMTSGGDAPGMNSNVRAIVRSAI-FKGCRAFV-VMEGYEGLVRG--GPEYIKEFHWEDV 62

Query: 141 RGWHKLGGTVLETSRGG---------FDLHQIVDAIQTNAFNQVYIIGGDGTMRGA---- 187
           RGW   GGT + T+R                +++A      + + + GGDG++ GA    
Sbjct: 63  RGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEA----GVDALIVCGGDGSLTGADLFR 118

Query: 188 ------VE-------IFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234
                 +E       I +E   R  ++ + G   ++DND+   D + G  +A++   +AI
Sbjct: 119 SEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAI 178

Query: 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEM-EFYLEGKGGLVEF 293
                 A S      +V++MGR+ G +AL A +++   D   IPE      E +  + + 
Sbjct: 179 DYVEATANSHSRAF-VVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDI 236

Query: 294 LD-NRLKENGHAVLVVAEGA 312
           +  +R +     ++VVAEGA
Sbjct: 237 VSKHRSRGKRTTIVVVAEGA 256



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 30/249 (12%)

Query: 78  PKNTR--AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLV- 134
           PK+ R   AIV  G    G+N+ +  +       Y + Q     A Y G+    R+  V 
Sbjct: 389 PKDKRLKIAIVNVGAPAGGINSAVYSMAT-----YCMSQGHRPYAIYNGWSGLARHESVR 443

Query: 135 -LNPKMVRGWHKLGGTVLETSR---GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190
            LN K + GW   GG+ + T+R      DL  I    Q   F+ + I+GG      A E 
Sbjct: 444 SLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGG----FEAFES 499

Query: 191 FDEIQRRK-----INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAV 245
             +++R +       + +V IP T+ N+V   + S G  TA+    +        A S  
Sbjct: 500 LHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTR 559

Query: 246 NGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAV 305
               +V   G ++G++A +A+L+        +PE    LE     +E+L    ++     
Sbjct: 560 GRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEK----- 613

Query: 306 LVVAEGAGQ 314
              AEG G+
Sbjct: 614 ---AEGRGR 619


>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
          Length = 762

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 37/257 (14%)

Query: 84  AIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRG 142
           A++T GG   G+N  +R +V VG++   G R +  +  GY+G      +      + V  
Sbjct: 19  AVLTSGGDAQGMNAAVRAVVRVGIFT--GAR-VFFVHEGYQGLVDGGDHIREATWESVSM 75

Query: 143 WHKLGGTVLETSRGG---------FDLHQIVDAIQTNAFNQVYIIGGDGTMRGA------ 187
             +LGGTV+ ++R              H +V    TN    + +IGGDG++ GA      
Sbjct: 76  MLQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITN----LCVIGGDGSLTGADTFRSE 131

Query: 188 -VEIFDEIQR----------RKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISA 236
             ++  ++Q+          R   + +VG+  ++DND    D + G  +A+    + + A
Sbjct: 132 WSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDA 191

Query: 237 AHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFL-D 295
               A+S      ++++MGR  G++AL  +LS    D   IPE       +  L   L +
Sbjct: 192 ITTTAQSHQRTF-VLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249

Query: 296 NRLKENGHAVLVVAEGA 312
            R + +   +++VAEGA
Sbjct: 250 TRTRGSRLNIIIVAEGA 266



 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 84  AIVTCGGLCPGLNTVIRELV-VGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRG 142
           A++  G    G+N  +R  V +GL  + G R +L +  G+ G           +   V G
Sbjct: 404 AVMNVGAPAAGMNAAVRSTVRIGL--IQGNR-VLVVHDGFEGPAKGQIEEAGWS--YVGG 458

Query: 143 WHKLGGTVLETSRG--GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD-EIQRRKI 199
           W   GG+ L + R        QI   I       + IIGG     G +E+ +   Q  ++
Sbjct: 459 WTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDEL 518

Query: 200 NVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTG 259
            +  V IP TV N+V   D S G  TA+             A      + +++ MG   G
Sbjct: 519 CIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCG 578

Query: 260 HIA 262
           ++A
Sbjct: 579 YLA 581


>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Marinobacter Aquaeolei,
           Northeast Structural Genomics Consortium Target Mqr88
 pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Marinobacter Aquaeolei,
           Northeast Structural Genomics Consortium Target Mqr88
 pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Marinobacter Aquaeolei,
           Northeast Structural Genomics Consortium Target Mqr88
          Length = 420

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 20/248 (8%)

Query: 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID 218
           +  ++++  + +     +  GG  +   A ++     R    +  +G+PKTVDND+   D
Sbjct: 92  EYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGYPITCIGVPKTVDNDLPFTD 151

Query: 219 RSFGFQTAVEMAQQAISAAHVEAESAVN---GIGLVKLMGRSTGHIALHATLSSRDV--- 272
              GF +  +    +   A ++ +S       + ++++MGR  G IA    L+ +     
Sbjct: 152 CCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGRHAGWIAAAGGLAGQSEGEP 211

Query: 273 -DCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESG 331
               L PE+ F  E     +E +D  +++ G+ V+V +EGA Q    R  A    +D  G
Sbjct: 212 PHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVASEGA-QYEDGRFVADAGAKDAFG 267

Query: 332 NLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP--ANATDNLYCTLLAHS 389
           +     V   L   +K+     +        +    Y+ RA    A+ATD      +  +
Sbjct: 268 HTQLGGVAPALANMVKQALGHKY-------HWAVADYLQRAARHIASATDVEQAYAVGKA 320

Query: 390 AIHGVMAG 397
           A+   +AG
Sbjct: 321 AVEMALAG 328


>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Nitrosospira Multiformis.
           Northeast Structural Genomics Consortium Target Id Nmr42
 pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Nitrosospira Multiformis.
           Northeast Structural Genomics Consortium Target Id Nmr42
 pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Nitrosospira Multiformis.
           Northeast Structural Genomics Consortium Target Id Nmr42
 pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
           Phosphofructokinase From Nitrosospira Multiformis.
           Northeast Structural Genomics Consortium Target Id Nmr42
          Length = 419

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 14/115 (12%)

Query: 206 IPKTVDNDVGIIDRSFGFQT-----AVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGH 260
           +PKTVDND+ I D   GF +     AV   + +   A + A S    + ++++MGR  G 
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATS--TKVFVLEVMGRHAGW 196

Query: 261 IALHATLSS---RDVDCC-LIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEG 311
           IA    L+S   R++    L PE+ F    K   +  +D+ +K+ G+  +VV+EG
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISF---DKQKFLAKVDSCVKKFGYCSVVVSEG 248


>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
           Gaba(B) Receptor Gbr2
 pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
           Gaba(B) Receptor Gbr2
          Length = 433

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 85  IVTCGGLCPGLNTVIRELVVGLWELY-----GVRQILGIQAGYRGFYSTTRNPLVLNPKM 139
           ++  GG+CP + ++I E + G W L          +L  +  Y  F+ T  +   +NP +
Sbjct: 87  LMVFGGVCPSVTSIIAESLQG-WNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAI 145

Query: 140 VR-----GWHKLGGTVLETSR 155
           ++      W ++G    +  R
Sbjct: 146 LKLLKHYQWKRVGTLTQDVQR 166


>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
 pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
          Length = 317

 Score = 28.1 bits (61), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 282 FYLEGKGGLVEFLDNRLKENGHA 304
           FY  G  G+VEFLD+R++  G A
Sbjct: 258 FYYAGPNGVVEFLDDRMRIYGDA 280


>pdb|2QE6|A Chain A, Crystal Structure Of A Putative Methyltransferase
           (Tfu_2867) From Thermobifida Fusca Yx At 1.95 A
           Resolution
 pdb|2QE6|B Chain B, Crystal Structure Of A Putative Methyltransferase
           (Tfu_2867) From Thermobifida Fusca Yx At 1.95 A
           Resolution
          Length = 274

 Score = 28.1 bits (61), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 283 YLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWL 342
           +L G+ G+ +FLD               G+G   +  T    +  +    +V++D+   +
Sbjct: 71  FLAGEAGISQFLD--------------LGSGLPTVQNTHEVAQSVNPDARVVYVDIDPXV 116

Query: 343 KTELKKWWARDHPGELFTVKYIDPTYMI 370
            T  +   A+D    +FT    DP Y++
Sbjct: 117 LTHGRALLAKDPNTAVFTADVRDPEYIL 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,111,735
Number of Sequences: 62578
Number of extensions: 613692
Number of successful extensions: 1492
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 28
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)