Query 042534
Match_columns 447
No_of_seqs 282 out of 1382
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 2E-125 3E-130 984.9 45.5 432 1-447 20-451 (484)
2 PRK06830 diphosphate--fructose 100.0 4E-121 8E-126 949.0 44.4 423 11-446 16-441 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 8E-118 2E-122 928.3 43.7 417 11-446 28-445 (459)
4 PLN02884 6-phosphofructokinase 100.0 1E-113 2E-118 887.5 41.6 407 32-445 2-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 1.4E-93 3E-98 732.7 38.8 351 80-443 3-400 (403)
6 PRK14071 6-phosphofructokinase 100.0 3.3E-89 7.2E-94 697.9 35.9 336 79-436 3-352 (360)
7 PRK14072 6-phosphofructokinase 100.0 7.2E-89 1.6E-93 706.6 35.1 333 80-427 3-364 (416)
8 cd00363 PFK Phosphofructokinas 100.0 7.7E-88 1.7E-92 683.6 36.4 325 81-435 1-336 (338)
9 TIGR02483 PFK_mixed phosphofru 100.0 9.5E-88 2.1E-92 678.5 33.6 316 82-419 1-324 (324)
10 cd00763 Bacterial_PFK Phosphof 100.0 1.9E-86 4E-91 666.9 34.1 301 81-427 1-307 (317)
11 TIGR02482 PFKA_ATP 6-phosphofr 100.0 1.1E-85 2.4E-90 656.7 33.5 295 82-419 1-301 (301)
12 PRK03202 6-phosphofructokinase 100.0 9.3E-85 2E-89 655.4 36.0 302 80-427 1-309 (320)
13 COG0205 PfkA 6-phosphofructoki 100.0 2.6E-83 5.6E-88 646.6 31.9 310 80-424 2-318 (347)
14 TIGR02477 PFKA_PPi diphosphate 100.0 1.7E-82 3.6E-87 674.0 38.3 376 52-434 42-499 (539)
15 PRK07085 diphosphate--fructose 100.0 9.5E-81 2.1E-85 661.8 37.9 373 52-433 47-507 (555)
16 PLN03028 pyrophosphate--fructo 100.0 3.9E-81 8.4E-86 668.5 35.0 367 52-422 48-484 (610)
17 cd00765 Pyrophosphate_PFK Phos 100.0 1.9E-80 4.1E-85 657.5 35.9 366 51-423 46-488 (550)
18 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.2E-80 4.8E-85 679.6 34.6 330 81-438 1-358 (745)
19 cd00764 Eukaryotic_PFK Phospho 100.0 6.1E-80 1.3E-84 673.4 35.7 332 79-438 2-361 (762)
20 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.2E-79 2.5E-84 673.9 37.3 341 67-438 375-736 (745)
21 PLN02251 pyrophosphate-depende 100.0 3.4E-79 7.3E-84 649.2 36.4 365 51-422 69-502 (568)
22 PTZ00468 phosphofructokinase f 100.0 3.8E-76 8.3E-81 658.2 36.0 365 51-421 73-502 (1328)
23 PF00365 PFK: Phosphofructokin 100.0 1.7E-76 3.6E-81 587.2 26.6 275 81-396 1-282 (282)
24 cd00764 Eukaryotic_PFK Phospho 100.0 2.9E-75 6.3E-80 636.7 35.2 324 80-438 389-736 (762)
25 PTZ00287 6-phosphofructokinase 100.0 2E-73 4.4E-78 640.2 34.2 339 79-421 176-573 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 7.8E-69 1.7E-73 603.2 31.4 336 79-421 835-1272(1419)
27 PTZ00468 phosphofructokinase f 100.0 2.6E-60 5.7E-65 531.2 30.6 338 79-422 674-1135(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 2E-56 4.3E-61 475.2 2.6 427 10-446 58-536 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 2.5E-41 5.3E-46 360.0 19.1 301 85-421 1-323 (666)
30 COG3199 Predicted inorganic po 93.5 0.076 1.6E-06 54.4 4.0 54 152-213 83-136 (355)
31 PF00532 Peripla_BP_1: Peripla 92.9 5 0.00011 39.7 15.9 175 81-307 2-186 (279)
32 PRK14077 pnk inorganic polypho 92.7 0.38 8.3E-06 48.5 7.6 54 171-239 64-119 (287)
33 PRK04885 ppnK inorganic polyph 92.5 0.34 7.4E-06 48.3 6.9 66 161-239 18-92 (265)
34 PRK00561 ppnK inorganic polyph 92.1 0.23 4.9E-06 49.4 5.0 62 161-237 18-87 (259)
35 PRK04761 ppnK inorganic polyph 92.0 0.25 5.5E-06 48.7 5.2 62 162-238 10-80 (246)
36 PRK03372 ppnK inorganic polyph 91.3 0.29 6.2E-06 49.8 5.0 56 171-241 72-129 (306)
37 cd01537 PBP1_Repressors_Sugar_ 91.2 11 0.00023 35.2 15.3 126 82-253 1-126 (264)
38 PRK03501 ppnK inorganic polyph 90.9 0.78 1.7E-05 45.8 7.5 55 171-238 39-95 (264)
39 PF01513 NAD_kinase: ATP-NAD k 90.6 0.15 3.2E-06 51.1 2.1 61 164-239 69-131 (285)
40 PRK01911 ppnK inorganic polyph 90.3 0.42 9.1E-06 48.3 5.1 56 171-241 64-121 (292)
41 PRK14075 pnk inorganic polypho 90.0 0.82 1.8E-05 45.3 6.7 51 171-239 41-93 (256)
42 PLN02929 NADH kinase 89.6 0.57 1.2E-05 47.6 5.4 63 171-239 64-136 (301)
43 PRK02649 ppnK inorganic polyph 89.3 0.56 1.2E-05 47.7 5.1 53 171-238 68-122 (305)
44 PRK03708 ppnK inorganic polyph 89.2 0.46 9.9E-06 47.7 4.3 44 169-228 55-98 (277)
45 PRK04539 ppnK inorganic polyph 89.0 0.58 1.3E-05 47.4 5.0 54 171-239 68-123 (296)
46 PRK03378 ppnK inorganic polyph 89.0 0.75 1.6E-05 46.5 5.7 53 171-238 63-117 (292)
47 TIGR01917 gly_red_sel_B glycin 88.2 1.1 2.4E-05 47.3 6.5 136 63-206 207-370 (431)
48 TIGR01918 various_sel_PB selen 87.9 1.2 2.5E-05 47.2 6.3 134 65-206 209-370 (431)
49 PRK01231 ppnK inorganic polyph 87.4 1.1 2.3E-05 45.4 5.6 114 78-239 2-117 (295)
50 PLN02935 Bifunctional NADH kin 86.3 1 2.2E-05 48.7 5.1 54 171-239 262-317 (508)
51 PRK02231 ppnK inorganic polyph 84.4 0.89 1.9E-05 45.5 3.3 53 171-238 42-96 (272)
52 PRK02645 ppnK inorganic polyph 83.8 1.2 2.6E-05 45.3 4.0 55 171-239 57-114 (305)
53 PRK02155 ppnK NAD(+)/NADH kina 83.4 2 4.2E-05 43.5 5.3 53 171-238 63-117 (291)
54 PRK11914 diacylglycerol kinase 82.8 2.3 4.9E-05 42.7 5.6 68 159-234 52-120 (306)
55 PRK01185 ppnK inorganic polyph 82.8 2.1 4.6E-05 42.8 5.2 52 171-240 52-105 (271)
56 TIGR00288 conserved hypothetic 82.3 14 0.00029 34.3 9.9 109 80-209 22-140 (160)
57 PRK13054 lipid kinase; Reviewe 82.2 3.7 8E-05 41.2 6.8 88 158-256 43-131 (300)
58 PRK13337 putative lipid kinase 81.9 3.8 8.2E-05 41.2 6.8 69 158-233 44-113 (304)
59 cd06321 PBP1_ABC_sugar_binding 81.4 50 0.0011 31.4 16.9 127 82-252 1-128 (271)
60 PRK14076 pnk inorganic polypho 79.9 2.7 5.7E-05 46.4 5.2 53 171-238 348-402 (569)
61 cd06320 PBP1_allose_binding Pe 79.4 59 0.0013 31.0 16.0 92 82-210 1-92 (275)
62 PRK13055 putative lipid kinase 78.3 4.7 0.0001 41.2 6.2 69 159-234 47-117 (334)
63 COG0061 nadF NAD kinase [Coenz 78.2 3.7 8E-05 41.2 5.3 44 170-228 54-97 (281)
64 PRK10703 DNA-binding transcrip 77.6 79 0.0017 31.4 15.5 69 81-184 60-128 (341)
65 COG1609 PurR Transcriptional r 77.2 14 0.00031 37.6 9.3 172 82-309 60-245 (333)
66 cd08180 PDD 1,3-propanediol de 76.8 5.2 0.00011 40.8 6.0 52 159-210 66-119 (332)
67 PF00465 Fe-ADH: Iron-containi 76.5 3.2 7E-05 42.8 4.4 54 159-212 66-133 (366)
68 PLN02727 NAD kinase 75.3 2.4 5.3E-05 48.9 3.3 54 171-239 743-798 (986)
69 cd08195 DHQS Dehydroquinate sy 75.3 3.2 6.9E-05 42.7 4.0 49 159-210 70-121 (345)
70 cd06317 PBP1_ABC_sugar_binding 75.2 76 0.0016 30.0 15.6 65 83-183 2-68 (275)
71 TIGR03702 lip_kinase_YegS lipi 75.1 7.9 0.00017 38.7 6.7 61 153-215 34-95 (293)
72 PRK13059 putative lipid kinase 72.7 7.5 0.00016 39.0 5.8 61 168-234 53-113 (295)
73 TIGR00147 lipid kinase, YegS/R 72.6 4.9 0.00011 39.9 4.5 48 163-215 49-98 (293)
74 cd06278 PBP1_LacI_like_2 Ligan 72.6 85 0.0018 29.4 15.7 82 83-206 2-83 (266)
75 PRK00861 putative lipid kinase 72.4 7.5 0.00016 38.9 5.8 68 158-234 44-112 (300)
76 cd08196 DHQS-like1 Dehydroquin 72.1 4.8 0.0001 41.6 4.4 65 159-229 61-128 (346)
77 PRK00002 aroB 3-dehydroquinate 72.1 4.9 0.00011 41.5 4.5 62 159-226 77-141 (358)
78 COG0206 FtsZ Cell division GTP 71.3 13 0.00028 38.5 7.2 208 79-313 10-232 (338)
79 cd08173 Gro1PDH Sn-glycerol-1- 71.3 8.6 0.00019 39.3 6.0 52 159-215 66-117 (339)
80 PRK13057 putative lipid kinase 71.3 7.7 0.00017 38.6 5.5 66 159-234 39-105 (287)
81 cd08189 Fe-ADH5 Iron-containin 71.2 8.7 0.00019 39.9 6.1 52 159-210 71-136 (374)
82 cd08199 EEVS 2-epi-5-epi-valio 70.6 5 0.00011 41.6 4.1 64 159-228 72-139 (354)
83 TIGR01357 aroB 3-dehydroquinat 70.5 7.7 0.00017 39.7 5.4 49 159-210 66-117 (344)
84 cd08170 GlyDH Glycerol dehydro 70.4 8.6 0.00019 39.5 5.8 47 159-210 65-111 (351)
85 cd08177 MAR Maleylacetate redu 70.2 8.5 0.00018 39.4 5.7 47 159-210 65-111 (337)
86 cd01542 PBP1_TreR_like Ligand- 70.2 96 0.0021 29.1 13.2 117 83-251 2-120 (259)
87 PRK13951 bifunctional shikimat 70.1 4.4 9.5E-05 43.9 3.7 135 85-230 140-290 (488)
88 PF00781 DAGK_cat: Diacylglyce 70.1 2.9 6.4E-05 36.4 2.0 64 160-229 42-108 (130)
89 cd08551 Fe-ADH iron-containing 70.0 8.9 0.00019 39.6 5.8 55 159-213 68-135 (370)
90 cd06273 PBP1_GntR_like_1 This 69.7 82 0.0018 29.7 12.1 78 160-252 44-123 (268)
91 cd08172 GlyDH-like1 Glycerol d 69.3 7.8 0.00017 39.8 5.2 50 159-213 64-113 (347)
92 PRK10355 xylF D-xylose transpo 69.0 59 0.0013 32.8 11.5 93 79-211 24-117 (330)
93 cd07766 DHQ_Fe-ADH Dehydroquin 68.8 8.7 0.00019 38.9 5.4 51 159-212 66-116 (332)
94 cd08178 AAD_C C-terminal alcoh 67.7 11 0.00025 39.4 6.1 33 159-191 66-98 (398)
95 cd08186 Fe-ADH8 Iron-containin 67.6 11 0.00025 39.2 6.1 51 159-209 72-136 (383)
96 cd06299 PBP1_LacI_like_13 Liga 67.4 1.1E+02 0.0024 28.7 16.6 120 83-251 2-122 (265)
97 cd08179 NADPH_BDH NADPH-depend 67.0 12 0.00026 38.8 6.1 52 159-210 69-136 (375)
98 cd06307 PBP1_uncharacterized_s 66.9 1.2E+02 0.0026 28.9 16.9 88 82-206 1-89 (275)
99 PRK00843 egsA NAD(P)-dependent 66.8 12 0.00025 38.7 5.9 50 159-213 75-124 (350)
100 PLN02958 diacylglycerol kinase 66.3 12 0.00026 40.6 6.0 99 113-216 112-215 (481)
101 PRK09860 putative alcohol dehy 66.2 12 0.00026 39.1 5.9 52 159-210 76-140 (383)
102 PRK15454 ethanol dehydrogenase 66.1 12 0.00025 39.4 5.8 51 159-209 94-157 (395)
103 TIGR02638 lactal_redase lactal 66.1 12 0.00026 39.0 5.8 51 159-209 74-139 (379)
104 cd08194 Fe-ADH6 Iron-containin 66.0 12 0.00027 38.8 5.9 51 159-209 68-131 (375)
105 cd06281 PBP1_LacI_like_5 Ligan 65.2 93 0.002 29.5 11.6 90 82-211 1-90 (269)
106 cd08193 HVD 5-hydroxyvalerate 65.0 13 0.00029 38.5 5.9 52 159-210 71-135 (376)
107 PLN02834 3-dehydroquinate synt 64.8 6.2 0.00013 42.1 3.5 64 159-228 148-214 (433)
108 TIGR02417 fruct_sucro_rep D-fr 64.3 1.5E+02 0.0033 29.2 16.0 137 81-265 61-205 (327)
109 cd06298 PBP1_CcpA_like Ligand- 64.1 1.1E+02 0.0024 28.7 11.8 77 160-252 44-123 (268)
110 cd08197 DOIS 2-deoxy-scyllo-in 64.0 9.9 0.00022 39.4 4.8 49 159-210 69-120 (355)
111 PRK15408 autoinducer 2-binding 63.8 1.8E+02 0.0038 29.7 15.2 180 79-302 22-208 (336)
112 PRK12361 hypothetical protein; 63.5 16 0.00035 39.9 6.5 58 159-224 285-343 (547)
113 cd08181 PPD-like 1,3-propanedi 63.3 15 0.00032 38.0 5.9 52 159-210 71-134 (357)
114 TIGR03822 AblA_like_2 lysine-2 63.2 1.8E+02 0.0039 29.7 13.7 161 84-257 139-310 (321)
115 PRK09423 gldA glycerol dehydro 62.9 15 0.00032 38.1 5.8 47 159-210 72-118 (366)
116 cd08182 HEPD Hydroxyethylphosp 62.9 15 0.00032 38.0 5.8 52 159-210 65-133 (367)
117 cd06297 PBP1_LacI_like_12 Liga 62.8 1.4E+02 0.0031 28.4 15.2 82 83-206 2-84 (269)
118 COG1597 LCB5 Sphingosine kinas 62.4 16 0.00036 36.9 5.9 70 159-236 46-117 (301)
119 cd08176 LPO Lactadehyde:propan 62.3 16 0.00034 38.1 5.9 52 159-210 73-137 (377)
120 cd08185 Fe-ADH1 Iron-containin 62.3 14 0.00031 38.3 5.6 52 159-210 71-140 (380)
121 cd08550 GlyDH-like Glycerol_de 62.1 15 0.00032 37.8 5.6 51 159-214 65-115 (349)
122 cd06283 PBP1_RegR_EndR_KdgR_li 61.8 1.1E+02 0.0024 28.7 11.3 120 83-251 2-122 (267)
123 PRK10423 transcriptional repre 61.3 1.7E+02 0.0037 28.7 15.6 69 81-184 57-125 (327)
124 PRK09330 cell division protein 61.2 1.8E+02 0.0039 30.7 13.5 137 159-314 87-236 (384)
125 PRK15138 aldehyde reductase; P 60.6 17 0.00036 38.1 5.7 34 159-192 73-106 (387)
126 cd06295 PBP1_CelR Ligand bindi 60.1 1.3E+02 0.0029 28.5 11.6 45 160-210 53-97 (275)
127 KOG4180 Predicted kinase [Gene 60.1 6.4 0.00014 40.4 2.4 68 133-206 45-135 (395)
128 PRK10624 L-1,2-propanediol oxi 59.9 18 0.0004 37.6 5.9 52 159-210 75-141 (382)
129 PRK06186 hypothetical protein; 59.2 19 0.0004 35.3 5.4 57 171-243 53-111 (229)
130 cd08184 Fe-ADH3 Iron-containin 58.3 20 0.00043 37.1 5.7 52 159-210 66-133 (347)
131 PRK10014 DNA-binding transcrip 58.0 2E+02 0.0043 28.5 20.6 133 81-264 65-208 (342)
132 cd08183 Fe-ADH2 Iron-containin 57.9 19 0.00042 37.3 5.6 51 159-209 63-130 (374)
133 cd06274 PBP1_FruR Ligand bindi 56.3 1.4E+02 0.003 28.2 10.9 83 83-206 2-84 (264)
134 COG1454 EutG Alcohol dehydroge 55.9 24 0.00051 37.2 5.8 51 159-209 74-137 (377)
135 cd06349 PBP1_ABC_ligand_bindin 55.7 44 0.00096 33.3 7.7 104 92-205 115-221 (340)
136 TIGR00732 dprA DNA protecting 55.6 70 0.0015 31.0 8.7 67 136-212 116-193 (220)
137 cd08191 HHD 6-hydroxyhexanoate 55.6 23 0.00049 37.0 5.8 51 159-209 67-130 (386)
138 PF09288 UBA_3: Fungal ubiquit 55.5 14 0.00031 28.1 3.0 45 135-194 8-53 (55)
139 PF04263 TPK_catalytic: Thiami 55.5 77 0.0017 27.8 8.2 79 102-183 8-96 (123)
140 cd08198 DHQS-like2 Dehydroquin 55.4 17 0.00038 38.0 4.8 64 160-229 85-151 (369)
141 cd08171 GlyDH-like2 Glycerol d 54.8 23 0.0005 36.3 5.6 47 159-210 66-112 (345)
142 TIGR03405 Phn_Fe-ADH phosphona 54.2 28 0.00061 35.9 6.1 51 159-209 66-135 (355)
143 cd08187 BDH Butanol dehydrogen 53.9 24 0.00052 36.7 5.6 53 159-211 74-139 (382)
144 cd06304 PBP1_BmpA_like Peripla 53.6 2E+02 0.0044 27.3 16.5 64 82-181 1-66 (260)
145 PRK10401 DNA-binding transcrip 53.2 2.4E+02 0.0053 28.0 15.5 65 81-181 60-125 (346)
146 cd08175 G1PDH Glycerol-1-phosp 52.8 21 0.00047 36.5 5.0 45 159-209 69-113 (348)
147 cd08188 Fe-ADH4 Iron-containin 52.4 31 0.00066 35.9 6.1 52 159-210 73-137 (377)
148 PRK10586 putative oxidoreducta 50.9 21 0.00045 37.2 4.5 60 159-224 75-134 (362)
149 PRK05670 anthranilate synthase 50.9 26 0.00057 32.5 4.8 49 167-228 39-87 (189)
150 COG0041 PurE Phosphoribosylcar 50.8 43 0.00094 30.9 5.9 9 200-208 80-88 (162)
151 cd08190 HOT Hydroxyacid-oxoaci 49.8 35 0.00075 36.1 6.0 33 159-191 68-100 (414)
152 cd06313 PBP1_ABC_sugar_binding 49.6 2.4E+02 0.0053 26.9 13.4 125 160-301 44-181 (272)
153 TIGR01481 ccpA catabolite cont 49.3 2.4E+02 0.0052 27.7 11.7 84 81-206 60-144 (329)
154 smart00046 DAGKc Diacylglycero 48.9 20 0.00043 31.1 3.5 42 171-215 49-93 (124)
155 cd06293 PBP1_LacI_like_11 Liga 48.4 2.4E+02 0.0051 26.6 11.2 132 83-265 2-143 (269)
156 PF00289 CPSase_L_chain: Carba 48.4 28 0.0006 30.0 4.2 45 158-206 61-105 (110)
157 cd08192 Fe-ADH7 Iron-containin 48.1 39 0.00086 34.9 6.1 52 159-210 69-137 (370)
158 cd06167 LabA_like LabA_like pr 48.0 40 0.00087 29.6 5.3 43 162-207 90-132 (149)
159 COG0052 RpsB Ribosomal protein 47.5 83 0.0018 31.3 7.7 61 172-239 157-218 (252)
160 PRK06203 aroB 3-dehydroquinate 47.5 33 0.00072 36.1 5.4 64 160-229 97-163 (389)
161 cd02072 Glm_B12_BD B12 binding 46.9 38 0.00082 30.2 4.9 25 158-182 65-90 (128)
162 cd08549 G1PDH_related Glycerol 46.5 33 0.00072 35.0 5.1 49 159-213 69-117 (332)
163 cd06315 PBP1_ABC_sugar_binding 46.3 1.3E+02 0.0028 29.1 9.1 67 81-182 1-67 (280)
164 PRK14021 bifunctional shikimat 46.3 19 0.00042 39.5 3.6 63 160-228 255-320 (542)
165 PRK05637 anthranilate synthase 46.3 44 0.00095 32.0 5.6 52 165-229 38-89 (208)
166 COG1122 CbiO ABC-type cobalt t 45.7 70 0.0015 31.3 7.0 99 208-309 95-196 (235)
167 cd06354 PBP1_BmpA_PnrA_like Pe 45.7 2.8E+02 0.0061 26.5 14.9 63 82-180 1-66 (265)
168 cd06285 PBP1_LacI_like_7 Ligan 45.0 2.7E+02 0.0059 26.2 14.7 85 83-208 2-86 (265)
169 cd08174 G1PDH-like Glycerol-1- 44.4 47 0.001 33.8 5.9 54 158-216 61-115 (331)
170 cd08169 DHQ-like Dehydroquinat 44.3 38 0.00083 34.9 5.2 64 159-228 68-134 (344)
171 TIGR00238 KamA family protein. 44.1 2.1E+02 0.0045 29.3 10.6 158 84-255 162-331 (331)
172 PF04405 ScdA_N: Domain of Unk 44.1 25 0.00054 26.8 2.8 26 161-188 13-38 (56)
173 PRK14987 gluconate operon tran 44.0 3.3E+02 0.0071 26.8 13.9 121 81-251 64-186 (331)
174 cd03822 GT1_ecORF704_like This 43.8 2.4E+02 0.0053 27.2 10.7 85 82-181 1-86 (366)
175 cd06302 PBP1_LsrB_Quorum_Sensi 43.2 3.2E+02 0.007 26.6 15.9 86 82-206 1-87 (298)
176 PF01936 NYN: NYN domain; Int 43.2 30 0.00065 30.0 3.7 49 162-213 86-134 (146)
177 cd06335 PBP1_ABC_ligand_bindin 43.1 1.4E+02 0.003 30.0 9.1 97 99-205 125-224 (347)
178 TIGR01133 murG undecaprenyldip 43.0 3.1E+02 0.0067 27.0 11.5 36 173-208 2-38 (348)
179 COG0504 PyrG CTP synthase (UTP 42.9 48 0.001 36.0 5.7 88 166-270 339-432 (533)
180 TIGR01283 nifE nitrogenase mol 42.3 1.2E+02 0.0026 32.5 8.8 104 82-190 124-242 (456)
181 COG0371 GldA Glycerol dehydrog 42.2 37 0.0008 35.5 4.7 55 158-217 71-125 (360)
182 COG4981 Enoyl reductase domain 41.9 2.3E+02 0.005 31.5 10.5 94 161-277 111-217 (717)
183 TIGR01752 flav_long flavodoxin 41.9 58 0.0012 29.7 5.5 39 78-118 76-117 (167)
184 cd07995 TPK Thiamine pyrophosp 41.7 1.1E+02 0.0023 29.1 7.5 93 84-183 1-102 (208)
185 PRK15404 leucine ABC transport 41.6 1.4E+02 0.0029 30.7 8.8 97 100-206 149-248 (369)
186 PF04208 MtrA: Tetrahydrometha 41.3 60 0.0013 30.5 5.4 66 133-199 27-95 (176)
187 cd01539 PBP1_GGBP Periplasmic 41.3 3.5E+02 0.0076 26.4 13.2 43 160-206 46-88 (303)
188 cd00537 MTHFR Methylenetetrahy 41.2 45 0.00097 33.0 5.0 72 136-207 46-137 (274)
189 cd06292 PBP1_LacI_like_10 Liga 41.1 3.1E+02 0.0068 25.8 13.7 127 83-252 2-129 (273)
190 PTZ00063 histone deacetylase; 40.9 1.4E+02 0.0031 32.0 9.0 99 95-219 234-332 (436)
191 TIGR00566 trpG_papA glutamine 40.9 44 0.00095 31.2 4.6 52 165-229 37-88 (188)
192 cd01391 Periplasmic_Binding_Pr 40.8 2.8E+02 0.006 25.1 16.2 83 159-252 46-131 (269)
193 cd01538 PBP1_ABC_xylose_bindin 40.1 3.5E+02 0.0076 26.1 20.8 86 82-206 1-86 (288)
194 PF07355 GRDB: Glycine/sarcosi 38.6 26 0.00057 36.4 2.9 31 65-96 213-243 (349)
195 cd06342 PBP1_ABC_LIVBP_like Ty 38.6 1.7E+02 0.0036 28.7 8.7 102 93-205 116-221 (334)
196 CHL00101 trpG anthranilate syn 38.5 45 0.00097 31.2 4.3 50 166-228 38-87 (190)
197 KOG4435 Predicted lipid kinase 38.3 50 0.0011 35.1 4.8 50 160-212 106-155 (535)
198 PRK13805 bifunctional acetalde 38.3 58 0.0013 37.8 6.0 32 160-191 528-559 (862)
199 cd01545 PBP1_SalR Ligand-bindi 38.2 3.4E+02 0.0074 25.4 14.7 80 160-251 45-124 (270)
200 TIGR00640 acid_CoA_mut_C methy 38.1 1.7E+02 0.0036 26.0 7.7 118 81-236 3-125 (132)
201 cd06323 PBP1_ribose_binding Pe 38.0 3.4E+02 0.0073 25.3 16.6 84 83-206 2-86 (268)
202 PRK13111 trpA tryptophan synth 37.2 2E+02 0.0043 28.6 8.8 49 159-209 105-153 (258)
203 PF07755 DUF1611: Protein of u 37.1 65 0.0014 32.9 5.4 179 76-277 31-220 (301)
204 COG1570 XseA Exonuclease VII, 37.1 1.5E+02 0.0033 31.8 8.4 91 81-205 136-230 (440)
205 PF01761 DHQ_synthase: 3-dehyd 36.8 10 0.00023 37.7 -0.3 65 159-229 14-81 (260)
206 PF02601 Exonuc_VII_L: Exonucl 36.8 1.9E+02 0.0042 29.1 8.9 99 80-212 14-120 (319)
207 smart00481 POLIIIAc DNA polyme 36.7 1.2E+02 0.0026 22.9 5.8 51 158-210 15-65 (67)
208 PF02401 LYTB: LytB protein; 36.1 56 0.0012 33.0 4.8 53 160-214 199-251 (281)
209 cd01575 PBP1_GntR Ligand-bindi 36.1 3.6E+02 0.0079 25.1 18.1 122 83-252 2-123 (268)
210 PRK04155 chaperone protein Hch 36.0 4.2E+02 0.0091 26.7 11.1 41 159-199 133-181 (287)
211 PF07905 PucR: Purine cataboli 35.9 1.2E+02 0.0026 26.3 6.3 71 136-208 32-107 (123)
212 cd06347 PBP1_ABC_ligand_bindin 35.7 1.7E+02 0.0037 28.6 8.2 60 144-206 161-223 (334)
213 TIGR00676 fadh2 5,10-methylene 35.5 65 0.0014 32.0 5.1 56 153-208 66-135 (272)
214 TIGR01162 purE phosphoribosyla 35.1 72 0.0016 29.5 4.9 52 152-210 34-86 (156)
215 cd04234 AAK_AK AAK_AK: Amino A 34.9 2.7E+02 0.0058 26.7 9.2 37 144-183 4-42 (227)
216 cd01968 Nitrogenase_NifE_I Nit 34.9 2.6E+02 0.0056 29.4 9.8 106 82-191 89-204 (410)
217 PRK06774 para-aminobenzoate sy 34.8 45 0.00098 31.0 3.7 49 165-226 37-85 (191)
218 PF05036 SPOR: Sporulation rel 34.8 57 0.0012 24.8 3.7 50 151-200 9-71 (76)
219 PF02645 DegV: Uncharacterised 34.8 81 0.0018 31.3 5.7 107 82-204 1-114 (280)
220 cd02991 UAS_ETEA UAS family, E 34.4 91 0.002 27.0 5.3 67 160-232 42-108 (116)
221 cd06305 PBP1_methylthioribose_ 34.2 4E+02 0.0086 25.0 18.8 125 82-252 1-127 (273)
222 PRK04011 peptide chain release 34.0 1.6E+02 0.0034 31.3 8.0 107 160-280 198-321 (411)
223 cd02071 MM_CoA_mut_B12_BD meth 33.9 1.6E+02 0.0034 25.4 6.7 45 139-183 42-91 (122)
224 PRK05261 putative phosphoketol 33.7 4.8E+02 0.01 30.3 12.1 51 76-127 39-91 (785)
225 TIGR00725 conserved hypothetic 33.6 3.3E+02 0.0072 24.8 9.1 40 158-207 82-122 (159)
226 PRK13018 cell division protein 33.4 6E+02 0.013 26.8 13.7 24 291-314 227-250 (378)
227 COG5561 Predicted metal-bindin 33.3 56 0.0012 27.5 3.5 24 81-107 28-52 (101)
228 TIGR02810 agaZ_gatZ D-tagatose 33.3 6.4E+02 0.014 27.1 13.0 139 82-251 12-168 (420)
229 TIGR01862 N2-ase-Ialpha nitrog 33.3 1.1E+02 0.0025 32.5 6.9 41 150-190 196-236 (443)
230 PRK15458 tagatose 6-phosphate 32.7 6.5E+02 0.014 27.0 12.3 139 82-251 16-172 (426)
231 PRK12815 carB carbamoyl phosph 32.7 2E+02 0.0043 34.5 9.3 107 79-207 6-119 (1068)
232 PLN02204 diacylglycerol kinase 32.5 48 0.001 37.0 3.9 70 113-188 160-235 (601)
233 cd06346 PBP1_ABC_ligand_bindin 32.5 2.6E+02 0.0056 27.5 8.9 97 98-205 124-223 (312)
234 PLN00197 beta-amylase; Provisi 32.3 2.9E+02 0.0064 30.6 9.6 94 160-253 129-272 (573)
235 PF13727 CoA_binding_3: CoA-bi 31.5 65 0.0014 28.4 4.1 44 160-203 130-173 (175)
236 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.4 1.1E+02 0.0023 28.7 5.7 57 253-310 141-199 (218)
237 cd06268 PBP1_ABC_transporter_L 31.3 3.2E+02 0.007 25.5 9.1 105 93-207 116-223 (298)
238 PF13407 Peripla_BP_4: Peripla 31.3 4.4E+02 0.0095 24.6 13.3 171 83-302 1-182 (257)
239 cd06533 Glyco_transf_WecG_TagA 31.2 1.4E+02 0.0031 27.4 6.3 87 80-180 46-133 (171)
240 cd06271 PBP1_AglR_RafR_like Li 31.2 4.4E+02 0.0094 24.5 10.6 40 161-206 49-88 (268)
241 cd06284 PBP1_LacI_like_6 Ligan 31.2 4.4E+02 0.0094 24.5 15.8 82 83-207 2-84 (267)
242 KOG1251 Serine racemase [Signa 31.1 73 0.0016 32.0 4.4 56 138-193 110-196 (323)
243 PF04122 CW_binding_2: Putativ 30.8 78 0.0017 25.7 4.1 38 146-185 49-86 (92)
244 TIGR01284 alt_nitrog_alph nitr 30.7 1.3E+02 0.0028 32.3 6.8 105 85-191 129-245 (457)
245 cd06294 PBP1_ycjW_transcriptio 30.6 4.5E+02 0.0098 24.5 12.1 79 160-252 49-129 (270)
246 TIGR00215 lpxB lipid-A-disacch 30.4 1.6E+02 0.0036 30.5 7.4 23 160-182 78-100 (385)
247 PRK10992 iron-sulfur cluster r 30.2 33 0.00071 33.3 2.0 32 161-200 16-47 (220)
248 PRK05096 guanosine 5'-monophos 30.0 2.5E+02 0.0053 29.3 8.3 103 160-278 138-242 (346)
249 TIGR01861 ANFD nitrogenase iro 29.7 1.3E+02 0.0028 33.0 6.6 35 158-192 215-249 (513)
250 TIGR00677 fadh2_euk methylenet 29.6 82 0.0018 31.6 4.8 55 153-207 67-138 (281)
251 PLN02335 anthranilate synthase 29.5 79 0.0017 30.5 4.5 46 167-225 58-103 (222)
252 TIGR01277 thiQ thiamine ABC tr 29.5 1.2E+02 0.0025 28.5 5.6 58 252-310 128-187 (213)
253 PRK10584 putative ABC transpor 29.5 1.2E+02 0.0025 28.7 5.6 57 252-309 146-204 (228)
254 PLN02821 1-hydroxy-2-methyl-2- 29.3 1.4E+02 0.0031 32.3 6.6 52 159-211 350-401 (460)
255 cd06310 PBP1_ABC_sugar_binding 29.1 4.9E+02 0.011 24.4 19.2 128 82-252 1-130 (273)
256 PF07131 DUF1382: Protein of u 29.0 1.3E+02 0.0027 23.4 4.5 37 199-244 22-58 (61)
257 COG1105 FruK Fructose-1-phosph 29.0 2.5E+02 0.0054 28.8 8.1 96 84-185 132-229 (310)
258 cd06334 PBP1_ABC_ligand_bindin 28.9 5.3E+02 0.011 26.1 10.7 104 92-205 116-226 (351)
259 PF00731 AIRC: AIR carboxylase 28.9 61 0.0013 29.7 3.4 51 153-209 37-87 (150)
260 cd06329 PBP1_SBP_like_3 Peripl 28.9 2.7E+02 0.0059 27.7 8.5 63 141-206 165-233 (342)
261 PRK12360 4-hydroxy-3-methylbut 28.8 62 0.0014 32.7 3.7 53 159-213 198-250 (281)
262 TIGR02826 RNR_activ_nrdG3 anae 28.7 1.4E+02 0.003 27.0 5.6 44 159-203 47-93 (147)
263 PRK00286 xseA exodeoxyribonucl 28.6 2.1E+02 0.0045 30.4 7.9 54 161-214 179-239 (438)
264 PRK10727 DNA-binding transcrip 28.6 3.9E+02 0.0084 26.5 9.5 67 81-182 60-126 (343)
265 PRK10247 putative ABC transpor 28.6 1.2E+02 0.0026 28.7 5.6 58 252-310 137-196 (225)
266 cd03298 ABC_ThiQ_thiamine_tran 28.5 1.3E+02 0.0027 28.1 5.6 58 252-310 128-187 (211)
267 TIGR03100 hydr1_PEP hydrolase, 28.5 5.4E+02 0.012 25.0 10.4 87 173-267 28-119 (274)
268 cd03237 ABC_RNaseL_inhibitor_d 28.2 1.2E+02 0.0026 29.5 5.5 57 253-310 116-174 (246)
269 PLN02735 carbamoyl-phosphate s 28.1 3E+02 0.0065 33.2 9.8 99 79-197 573-676 (1102)
270 PRK01045 ispH 4-hydroxy-3-meth 28.0 1.5E+02 0.0033 30.1 6.4 76 160-237 200-279 (298)
271 cd06290 PBP1_LacI_like_9 Ligan 28.0 5E+02 0.011 24.2 15.6 65 83-183 2-67 (265)
272 PRK11629 lolD lipoprotein tran 27.9 1.3E+02 0.0028 28.6 5.7 52 258-310 151-204 (233)
273 cd01977 Nitrogenase_VFe_alpha 27.9 1.5E+02 0.0033 31.2 6.6 101 81-189 90-206 (415)
274 TIGR03864 PQQ_ABC_ATP ABC tran 27.7 1.3E+02 0.0028 28.6 5.6 57 252-309 132-190 (236)
275 cd06348 PBP1_ABC_ligand_bindin 27.4 3.2E+02 0.007 27.1 8.7 60 142-204 160-222 (344)
276 PRK02261 methylaspartate mutas 27.2 3E+02 0.0065 24.5 7.5 103 79-198 2-112 (137)
277 cd03259 ABC_Carb_Solutes_like 27.1 1.4E+02 0.0029 27.9 5.6 58 252-310 130-189 (213)
278 PRK14478 nitrogenase molybdenu 27.1 1.6E+02 0.0035 31.7 6.8 103 83-190 123-236 (475)
279 cd06326 PBP1_STKc_like Type I 27.0 3.4E+02 0.0074 26.6 8.7 104 92-206 117-223 (336)
280 TIGR01916 F420_cofE F420-0:gam 27.0 1.4E+02 0.0031 29.5 5.7 59 245-312 88-151 (243)
281 PLN02803 beta-amylase 27.0 4.3E+02 0.0092 29.3 9.7 94 160-253 109-252 (548)
282 cd01967 Nitrogenase_MoFe_alpha 26.7 1.6E+02 0.0035 30.6 6.6 104 83-190 91-205 (406)
283 PRK13789 phosphoribosylamine-- 26.5 3.3E+02 0.0073 28.9 9.0 97 79-207 3-99 (426)
284 cd06338 PBP1_ABC_ligand_bindin 26.5 4.2E+02 0.0091 26.1 9.3 62 142-206 164-228 (345)
285 cd06303 PBP1_LuxPQ_Quorum_Sens 26.4 5.7E+02 0.012 24.4 13.6 23 160-182 49-71 (280)
286 cd01540 PBP1_arabinose_binding 26.4 5.7E+02 0.012 24.3 19.6 85 82-206 1-85 (289)
287 PRK05077 frsA fermentation/res 26.2 3.2E+02 0.0069 28.8 8.7 85 172-268 194-285 (414)
288 cd03250 ABCC_MRP_domain1 Domai 26.2 1.3E+02 0.0028 27.9 5.2 58 252-310 127-186 (204)
289 cd03267 ABC_NatA_like Similar 26.2 1.4E+02 0.003 28.6 5.5 58 252-310 153-212 (236)
290 cd06308 PBP1_sensor_kinase_lik 26.1 5.6E+02 0.012 24.1 18.3 123 160-300 45-179 (270)
291 TIGR00262 trpA tryptophan synt 26.1 1.2E+02 0.0026 30.0 5.2 48 160-209 104-151 (256)
292 PLN02801 beta-amylase 26.0 4.4E+02 0.0096 29.0 9.6 94 160-253 39-183 (517)
293 cd03293 ABC_NrtD_SsuB_transpor 26.0 1.5E+02 0.0032 27.9 5.6 58 252-310 131-190 (220)
294 PRK12767 carbamoyl phosphate s 25.7 5.8E+02 0.012 25.2 10.2 39 159-198 57-95 (326)
295 PRK14462 ribosomal RNA large s 25.7 1.2E+02 0.0025 31.8 5.2 159 83-257 162-339 (356)
296 TIGR00253 RNA_bind_YhbY putati 25.6 2.8E+02 0.0061 23.4 6.5 36 168-203 12-49 (95)
297 TIGR03005 ectoine_ehuA ectoine 25.5 1.5E+02 0.0031 28.6 5.6 58 252-310 146-205 (252)
298 PRK13640 cbiO cobalt transport 25.4 1.3E+02 0.0029 29.6 5.5 58 252-310 143-202 (282)
299 PRK03692 putative UDP-N-acetyl 25.4 1.7E+02 0.0038 28.7 6.1 85 81-180 106-191 (243)
300 PF01994 Trm56: tRNA ribose 2' 25.3 35 0.00075 30.1 1.0 63 139-207 16-78 (120)
301 PRK04183 glutamyl-tRNA(Gln) am 25.3 3.8E+02 0.0082 28.7 9.0 33 171-206 152-185 (419)
302 PRK10771 thiQ thiamine transpo 25.2 1.5E+02 0.0033 28.1 5.6 58 252-310 129-188 (232)
303 cd01965 Nitrogenase_MoFe_beta_ 25.2 6.5E+02 0.014 26.5 10.9 69 161-233 71-145 (428)
304 PF13685 Fe-ADH_2: Iron-contai 25.0 56 0.0012 32.4 2.6 52 159-215 63-114 (250)
305 cd03265 ABC_DrrA DrrA is the A 25.0 1.6E+02 0.0034 27.7 5.6 58 252-310 131-190 (220)
306 TIGR02211 LolD_lipo_ex lipopro 25.0 1.6E+02 0.0035 27.5 5.7 57 252-309 141-199 (221)
307 cd03296 ABC_CysA_sulfate_impor 24.9 1.5E+02 0.0033 28.2 5.5 58 252-310 136-195 (239)
308 PLN02705 beta-amylase 24.8 4.7E+02 0.01 29.5 9.6 101 160-260 270-421 (681)
309 cd03256 ABC_PhnC_transporter A 24.8 1.5E+02 0.0033 28.1 5.5 58 252-310 144-203 (241)
310 PRK01372 ddl D-alanine--D-alan 24.7 2.7E+02 0.0059 27.4 7.5 36 80-118 4-42 (304)
311 cd06291 PBP1_Qymf_like Ligand 24.6 5.8E+02 0.013 23.8 10.3 115 83-251 2-118 (265)
312 cd06337 PBP1_ABC_ligand_bindin 24.5 1.9E+02 0.0041 29.2 6.5 62 142-206 171-235 (357)
313 KOG0066 eIF2-interacting prote 24.5 2.3E+02 0.005 30.9 7.0 88 222-312 665-761 (807)
314 PRK09984 phosphonate/organopho 24.4 1.5E+02 0.0033 28.7 5.5 59 252-311 152-212 (262)
315 cd03214 ABC_Iron-Siderophores_ 24.4 1.7E+02 0.0037 26.6 5.6 58 252-310 97-156 (180)
316 cd06312 PBP1_ABC_sugar_binding 24.3 6E+02 0.013 23.9 10.2 86 82-206 1-88 (271)
317 cd03258 ABC_MetN_methionine_tr 24.3 1.7E+02 0.0036 27.7 5.7 58 252-310 140-199 (233)
318 PRK13210 putative L-xylulose 5 24.3 5.1E+02 0.011 25.0 9.3 50 158-207 16-74 (284)
319 PLN02735 carbamoyl-phosphate s 24.3 3.4E+02 0.0074 32.7 9.3 107 79-207 22-135 (1102)
320 cd04509 PBP1_ABC_transporter_G 24.3 4E+02 0.0086 24.9 8.3 61 143-206 160-225 (299)
321 cd03230 ABC_DR_subfamily_A Thi 24.2 1.6E+02 0.0034 26.7 5.3 55 253-309 96-152 (173)
322 PRK05660 HemN family oxidoredu 24.2 81 0.0018 32.8 3.8 66 170-235 57-137 (378)
323 cd03257 ABC_NikE_OppD_transpor 24.0 1.7E+02 0.0037 27.4 5.6 58 252-310 145-204 (228)
324 TIGR02323 CP_lyasePhnK phospho 24.0 1.6E+02 0.0034 28.3 5.5 59 252-311 148-208 (253)
325 PRK05294 carB carbamoyl phosph 24.0 3.7E+02 0.0081 32.1 9.6 48 159-212 617-666 (1066)
326 TIGR02315 ABC_phnC phosphonate 23.9 1.6E+02 0.0035 27.9 5.6 58 252-310 145-204 (243)
327 COG3657 Uncharacterized protei 23.9 50 0.0011 28.0 1.7 37 66-102 55-91 (100)
328 TIGR01860 VNFD nitrogenase van 23.8 2.3E+02 0.0051 30.4 7.2 107 81-190 129-246 (461)
329 cd06306 PBP1_TorT-like TorT-li 23.6 6.3E+02 0.014 23.9 15.6 87 82-206 1-87 (268)
330 cd03301 ABC_MalK_N The N-termi 23.6 1.7E+02 0.0037 27.2 5.5 58 252-310 130-189 (213)
331 COG0763 LpxB Lipid A disacchar 23.5 2E+02 0.0044 30.3 6.4 108 81-206 2-117 (381)
332 PF03808 Glyco_tran_WecB: Glyc 23.5 3.2E+02 0.0069 25.1 7.2 37 81-123 49-85 (172)
333 cd03261 ABC_Org_Solvent_Resist 23.4 1.7E+02 0.0037 27.7 5.6 58 252-310 136-195 (235)
334 PF02776 TPP_enzyme_N: Thiamin 23.4 1.8E+02 0.0038 26.5 5.4 40 161-205 5-44 (172)
335 cd03229 ABC_Class3 This class 23.3 1.8E+02 0.004 26.4 5.6 57 253-310 101-159 (178)
336 PRK15052 D-tagatose-1,6-bispho 23.3 9.5E+02 0.021 25.8 13.4 138 83-251 14-168 (421)
337 cd03222 ABC_RNaseL_inhibitor T 23.2 1.8E+02 0.0039 27.0 5.5 57 253-310 72-130 (177)
338 COG1922 WecG Teichoic acid bio 23.2 4.1E+02 0.0089 26.5 8.2 38 81-124 109-146 (253)
339 cd03295 ABC_OpuCA_Osmoprotecti 23.2 1.7E+02 0.0037 27.9 5.6 57 253-310 136-194 (242)
340 PF13458 Peripla_BP_6: Peripla 23.1 4.4E+02 0.0095 25.8 8.7 100 92-201 115-217 (343)
341 PF00571 CBS: CBS domain CBS d 23.0 69 0.0015 22.9 2.2 29 159-187 17-45 (57)
342 TIGR02769 nickel_nikE nickel i 22.9 1.7E+02 0.0036 28.5 5.5 59 252-311 150-210 (265)
343 TIGR01184 ntrCD nitrate transp 22.7 1.8E+02 0.004 27.6 5.6 58 252-310 114-173 (230)
344 PF02633 Creatininase: Creatin 22.5 2.2E+02 0.0048 27.4 6.2 45 160-204 88-133 (237)
345 cd03297 ABC_ModC_molybdenum_tr 22.4 1.9E+02 0.004 27.1 5.5 57 252-309 131-189 (214)
346 TIGR02770 nickel_nikD nickel i 22.4 1.7E+02 0.0038 27.7 5.4 58 252-310 125-184 (230)
347 PLN02905 beta-amylase 22.2 5.5E+02 0.012 29.1 9.6 100 160-259 288-438 (702)
348 PLN02948 phosphoribosylaminoim 22.2 2.2E+02 0.0048 31.6 6.8 46 199-265 487-537 (577)
349 TIGR00108 eRF peptide chain re 21.9 2.1E+02 0.0047 30.3 6.4 107 160-280 194-317 (409)
350 TIGR00176 mobB molybdopterin-g 21.9 3.1E+02 0.0067 24.7 6.7 47 175-227 2-51 (155)
351 cd01574 PBP1_LacI Ligand-bindi 21.9 6.5E+02 0.014 23.4 11.5 131 83-264 2-142 (264)
352 cd06277 PBP1_LacI_like_1 Ligan 21.9 6.5E+02 0.014 23.6 9.3 40 160-206 47-86 (268)
353 PRK12815 carB carbamoyl phosph 21.8 8.6E+02 0.019 29.2 12.0 42 159-206 618-660 (1068)
354 PRK07649 para-aminobenzoate/an 21.7 1E+02 0.0022 29.0 3.6 50 166-228 38-87 (195)
355 TIGR00696 wecB_tagA_cpsF bacte 21.7 2.6E+02 0.0057 26.1 6.3 85 81-180 49-134 (177)
356 cd03409 Chelatase_Class_II Cla 21.6 4.3E+02 0.0093 21.2 9.0 60 85-178 4-65 (101)
357 PRK12446 undecaprenyldiphospho 21.6 6E+02 0.013 26.0 9.5 97 174-272 4-116 (352)
358 COG0414 PanC Panthothenate syn 21.6 1.2E+02 0.0027 30.6 4.2 36 240-276 16-52 (285)
359 KOG1838 Alpha/beta hydrolase [ 21.6 4.3E+02 0.0093 28.3 8.4 103 81-212 124-233 (409)
360 PRK14250 phosphate ABC transpo 21.5 2E+02 0.0043 27.6 5.6 58 252-310 131-190 (241)
361 cd06296 PBP1_CatR_like Ligand- 21.5 6.7E+02 0.014 23.4 16.9 81 160-252 44-124 (270)
362 cd02201 FtsZ_type1 FtsZ is a G 21.5 8.4E+02 0.018 24.5 10.5 47 160-209 75-126 (304)
363 TIGR02673 FtsE cell division A 21.5 2E+02 0.0042 26.8 5.5 56 252-309 137-194 (214)
364 PRK13371 4-hydroxy-3-methylbut 21.5 2.5E+02 0.0055 29.7 6.6 54 159-213 276-329 (387)
365 PRK15112 antimicrobial peptide 21.4 1.8E+02 0.0039 28.4 5.4 57 253-310 150-208 (267)
366 TIGR01501 MthylAspMutase methy 21.3 5.5E+02 0.012 23.0 8.0 86 81-183 2-93 (134)
367 TIGR02982 heterocyst_DevA ABC 21.3 2.1E+02 0.0045 26.9 5.6 58 252-310 141-200 (220)
368 PRK08007 para-aminobenzoate sy 21.2 1.2E+02 0.0026 28.2 4.0 49 165-226 37-85 (187)
369 cd01672 TMPK Thymidine monopho 21.2 1.4E+02 0.0029 26.9 4.2 35 175-209 3-39 (200)
370 PRK15395 methyl-galactoside AB 21.1 8.3E+02 0.018 24.3 18.0 92 78-208 22-114 (330)
371 cd00568 TPP_enzymes Thiamine p 21.0 79 0.0017 28.0 2.6 12 174-185 66-77 (168)
372 cd03225 ABC_cobalt_CbiO_domain 21.0 2E+02 0.0043 26.7 5.4 56 252-309 134-191 (211)
373 PF00186 DHFR_1: Dihydrofolate 20.9 51 0.0011 30.3 1.3 51 159-217 79-129 (161)
374 PRK11831 putative ABC transpor 20.9 2E+02 0.0043 28.1 5.6 58 252-310 143-202 (269)
375 cd06311 PBP1_ABC_sugar_binding 20.8 7.1E+02 0.015 23.4 12.9 46 159-208 48-93 (274)
376 TIGR00968 3a0106s01 sulfate AB 20.7 2.1E+02 0.0045 27.3 5.6 57 253-310 131-189 (237)
377 PRK03359 putative electron tra 20.7 2.9E+02 0.0063 27.5 6.6 53 162-215 71-128 (256)
378 PF06414 Zeta_toxin: Zeta toxi 20.6 4.9E+02 0.011 24.1 8.0 108 77-206 10-127 (199)
379 COG0816 Predicted endonuclease 20.6 98 0.0021 28.1 3.0 29 185-213 40-68 (141)
380 PRK13648 cbiO cobalt transport 20.6 2E+02 0.0043 28.1 5.5 58 252-310 142-201 (269)
381 TIGR03282 methan_mark_13 putat 20.5 2.2E+02 0.0047 29.8 5.8 69 160-232 64-132 (352)
382 PLN02161 beta-amylase 20.5 6.3E+02 0.014 27.9 9.4 95 160-254 119-263 (531)
383 TIGR00237 xseA exodeoxyribonuc 20.4 5E+02 0.011 27.7 8.8 43 172-214 188-234 (432)
384 PRK10253 iron-enterobactin tra 20.3 2E+02 0.0043 28.0 5.5 58 252-310 143-202 (265)
385 cd06300 PBP1_ABC_sugar_binding 20.3 7.2E+02 0.016 23.3 17.6 93 82-209 1-94 (272)
386 cd01744 GATase1_CPSase Small c 20.2 1.9E+02 0.0042 26.5 5.0 49 167-230 35-86 (178)
387 PRK13541 cytochrome c biogenes 20.2 2.1E+02 0.0046 26.3 5.4 57 252-310 123-181 (195)
388 PRK11780 isoprenoid biosynthes 20.2 1.2E+02 0.0025 29.3 3.7 38 167-204 81-134 (217)
389 PRK11701 phnK phosphonate C-P 20.1 2.1E+02 0.0045 27.7 5.5 59 252-311 151-211 (258)
390 COG0482 TrmU Predicted tRNA(5- 20.0 5.3E+02 0.011 27.1 8.6 69 78-177 1-69 (356)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.6e-125 Score=984.89 Aligned_cols=432 Identities=58% Similarity=1.001 Sum_probs=408.1
Q ss_pred CccccccCCCCCCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCC
Q 042534 1 PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKN 80 (447)
Q Consensus 1 p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~ 80 (447)
|||+||+ |++|+++||+..++.++....+||+|+|+|++++...... ....+|+|||||++|||+|++
T Consensus 20 ~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~----------~~~~~~~~agpr~~i~f~p~~ 87 (484)
T PLN02564 20 PHLTDYL--PDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDS----------PRGTHFRRAGPRQKVYFESDE 87 (484)
T ss_pred cchhhcC--CCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccc----------cCCccceecCCcceEEEcCcc
Confidence 8999998 9999999999999999988999999999999988776321 234689999999999999999
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
+|||||||||||||||+|||++|+++++.|++.+||||++||+||++++ +++|+++.|++|+++|||+|||||++++.
T Consensus 88 ~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~--~i~Lt~~~V~~i~~~GGTiLGTsR~~~~~ 165 (484)
T PLN02564 88 VRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRN--TIPLTPKVVNDIHKRGGTILGTSRGGHDT 165 (484)
T ss_pred eEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCC--eEeCCHHHhhcHhhCCCceeccCCCcchH
Confidence 9999999999999999999999999987888889999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHh
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~ 240 (447)
++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|+++++|
T Consensus 166 ~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~i~~t 245 (484)
T PLN02564 166 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 245 (484)
T ss_pred HHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhh
Q 042534 241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRT 320 (447)
Q Consensus 241 A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~ 320 (447)
|.|+++||+|||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||++++++.+.
T Consensus 246 A~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~~~~~ 325 (484)
T PLN02564 246 AESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDLIAES 325 (484)
T ss_pred HHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccchhhhh
Confidence 99987899999999999999999999999559999999999999998899999999999999999999999998877655
Q ss_pred hhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCc
Q 042534 321 AAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTG 400 (447)
Q Consensus 321 ~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg 400 (447)
.....++|++||++|.+++.||+++|+++++++. +..+++|+++|||+|||++|+++||+||++||+.|||++|+|+||
T Consensus 326 ~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~-~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg 404 (484)
T PLN02564 326 MESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVK-KMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTG 404 (484)
T ss_pred hcccccccccCCcccCcHHHHHHHHHHHHhhhcc-cCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4333468999999999999999999999994321 344899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHHHhcCCCCCCCC
Q 042534 401 FVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS 447 (447)
Q Consensus 401 ~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~~t~qp~~~~~ 447 (447)
+||+++|++++++||++++..+|+|++++++|++++++||||+|++|
T Consensus 405 ~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~ 451 (484)
T PLN02564 405 FTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSP 451 (484)
T ss_pred EEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCc
Confidence 99999999999999999999999999999999999999999999874
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.6e-121 Score=948.98 Aligned_cols=423 Identities=46% Similarity=0.785 Sum_probs=396.4
Q ss_pred CCCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCC
Q 042534 11 NLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGG 90 (447)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG 90 (447)
.+|+++|||..+..+++.. +||+|+|+|++++........ ..+...+.+|++||||++|||+|+++|||||||||
T Consensus 16 g~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG 90 (443)
T PRK06830 16 GECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEE----DAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGG 90 (443)
T ss_pred CCCCCCCcccccccccccc-eecCCCceEEEeccccccccc----ccCccccchhhhcCCcceeEEcCcccEEEEECCCC
Confidence 4789999999998888888 899999999998877543211 11123557899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhcCCeEEEEEccccccccc---CCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHH
Q 042534 91 LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS---TTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAI 167 (447)
Q Consensus 91 ~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l 167 (447)
||||||++||++|++++++|++.+||||++||+||++ ++ +++|+++.|++|+++|||+|||||++++.++++++|
T Consensus 91 ~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~--~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L 168 (443)
T PRK06830 91 LCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHD--PVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTL 168 (443)
T ss_pred CchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCC--EEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHH
Confidence 9999999999999999888898899999999999998 55 999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCc
Q 042534 168 QTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNG 247 (447)
Q Consensus 168 ~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~ 247 (447)
++++||+||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++|
T Consensus 169 ~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~r 248 (443)
T PRK06830 169 ERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNG 248 (443)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred EEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhhhhcc
Q 042534 248 IGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEER 327 (447)
Q Consensus 248 v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~ 327 (447)
|+|||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++++.+.. .++
T Consensus 249 v~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~~----~~~ 324 (443)
T PRK06830 249 IGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDT----GET 324 (443)
T ss_pred EEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCccccccccc----ccc
Confidence 9999999999999999999999559999999999999999999999999999999999999999998876432 358
Q ss_pred cccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeC
Q 042534 328 DESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPIN 407 (447)
Q Consensus 328 D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~ 407 (447)
|+|||++|.+++.+|+++|+++|+.. +..+++||++|||+|||++||++||+||++||++|||++|+|+||+||++++
T Consensus 325 Da~gn~~l~~ig~~L~~~i~~~~~~~--~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~ 402 (443)
T PRK06830 325 DASGNPKLGDIGLFLKDRIKEYFKAR--GIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWN 402 (443)
T ss_pred cccCCcccccHHHHHHHHHHHHhccc--CCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 99999999999999999999999754 4458999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecHHHHHhhcCCCCCChHHHHHHHHhcCCCCCCC
Q 042534 408 GNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVK 446 (447)
Q Consensus 408 ~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~~t~qp~~~~ 446 (447)
++++++||+++++++|+||+++.+|+++|++||||.|++
T Consensus 403 ~~~~~vPl~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~ 441 (443)
T PRK06830 403 NRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSMG 441 (443)
T ss_pred CEEEEEeHHHHhccCCCCCCccHHHHHHHHHhCCCcccc
Confidence 999999999999988999999999999999999999975
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=8.1e-118 Score=928.28 Aligned_cols=417 Identities=48% Similarity=0.839 Sum_probs=386.2
Q ss_pred CCCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCC
Q 042534 11 NLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGG 90 (447)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG 90 (447)
.+|+++||+.... .-....||+++|+|++++....... .....+|+|||||++|||+|+++|||||||||
T Consensus 28 g~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~agpr~~~~f~p~~~~iaIvT~GG 97 (459)
T PTZ00286 28 GECNLRGVFGGNG--FLPREAFVDTNSYILSTPRFGPDDV--------IVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGG 97 (459)
T ss_pred CcCCCCCCccccc--cCCccceecCCCeEEeecccCcccc--------ccccchheecCCceeEEEcccccEEEEECCCC
Confidence 4688999997431 1123569999999999987764321 12447899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHHHHc
Q 042534 91 LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTN 170 (447)
Q Consensus 91 ~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~~~ 170 (447)
||||||+|||++|+++++.|++.+||||++||+||++++ +++|+|+.|++|+++|||+|||||+++++++|+++|+++
T Consensus 98 ~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~--~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~ 175 (459)
T PTZ00286 98 LCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKED--WIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRH 175 (459)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCC--eEECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHc
Confidence 999999999999999987888889999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEE
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGL 250 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~i 250 (447)
+||+||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|++++.||.|+++||+|
T Consensus 176 ~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~i 255 (459)
T PTZ00286 176 GINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGI 255 (459)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997779999
Q ss_pred EEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhhhhccccc
Q 042534 251 VKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDES 330 (447)
Q Consensus 251 VevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~ 330 (447)
||+|||+|||||++++||+++||+|||||.||+++ +++++|++|+++++|+|||||||+++++.+... ..++|++
T Consensus 256 VEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~~D~~ 330 (459)
T PTZ00286 256 VKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLGTDAS 330 (459)
T ss_pred EEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--ccccccc
Confidence 99999999999999999997799999999999998 799999999999999999999999987765443 2358999
Q ss_pred CCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCEE
Q 042534 331 GNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNY 410 (447)
Q Consensus 331 Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~~~~ 410 (447)
||++|.+++.||+++|+++|+++ +..+++|+++|||+|||++||++||+||++||++|||++|+|+||+||+++++++
T Consensus 331 Gn~~l~dig~~L~~~I~~~~~~~--~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~ 408 (459)
T PTZ00286 331 GNKKLWDIGVYLKDEITKYLKKK--KPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNY 408 (459)
T ss_pred CCcccccHHHHHHHHHHHHHhhc--cCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEE
Confidence 99999999999999999999866 3458999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHH-HhhcCCCCCChHHHHHHHHhcCCCCCCC
Q 042534 411 AYIPLEDV-AQATNAVNTKDHKWAWVRTVTNQPDFVK 446 (447)
Q Consensus 411 ~~vPl~~v-~~~~k~v~~~~~~w~~~~~~t~qp~~~~ 446 (447)
+++||+++ .+.+|.++++++||.+++++||||.|++
T Consensus 409 ~~vPl~~v~~~~~~~v~~~~~~w~~~~~~tgqp~~~~ 445 (459)
T PTZ00286 409 VMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLN 445 (459)
T ss_pred EEEeHHHHhCCCccccCcchHHHHHHHHhcCCCCccc
Confidence 99999994 5667899999999999999999999976
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.1e-113 Score=887.45 Aligned_cols=407 Identities=48% Similarity=0.824 Sum_probs=375.5
Q ss_pred ccCCCceEEEEeeeccccccCCCCCCCC---CcceeEEecCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHH
Q 042534 32 YVSPSDVILRQIVYDLSSACGAFSDSDP---RVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWE 108 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~ 108 (447)
||+++|+|++++....++.+....+.++ -.+.||+|||||++|||+|+++|||||||||||||||+|||++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~- 80 (411)
T PLN02884 2 YVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE- 80 (411)
T ss_pred CcCccchhheeeeeccCCCcccccccCCCcccchhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-
Confidence 9999999999987755543322222222 255789999999999999999999999999999999999999999984
Q ss_pred hcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHH
Q 042534 109 LYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV 188 (447)
Q Consensus 109 ~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~ 188 (447)
.||+.+||||++||+||++++...++|+++.|++|+++|||+|||||+++++++++++|++++||+||+||||||+++|+
T Consensus 81 ~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~ 160 (411)
T PLN02884 81 IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN 160 (411)
T ss_pred HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH
Confidence 68887899999999999998855677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhc
Q 042534 189 EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLS 268 (447)
Q Consensus 189 ~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA 268 (447)
+|+++++++|++|+||||||||||||++||+|||||||+++++++|++++.||.|+++||+|||+|||+|||||++++||
T Consensus 161 ~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA 240 (411)
T PLN02884 161 AIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240 (411)
T ss_pred HHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999997889999999999999999999999
Q ss_pred cCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHH
Q 042534 269 SRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKK 348 (447)
Q Consensus 269 ~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~ 348 (447)
++.||+|||||.||+++++++++++|++++++++|+|||||||+++.+.... ..+|++||++|++++.+|+++|++
T Consensus 241 ~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~~----~~~Da~G~~~l~~~~~~La~~i~~ 316 (411)
T PLN02884 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKK 316 (411)
T ss_pred cCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEeccccccccccc----ccccccCCcccCcHHHHHHHHHHH
Confidence 9879999999999999777789999999999999999999999987654322 247999999999999999999999
Q ss_pred HhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCC
Q 042534 349 WWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTK 428 (447)
Q Consensus 349 ~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~ 428 (447)
++++. +..+++|+++|||+|||++|+++||+||++||+.||+++++|+||+||++++++++++||+++++.+|.||++
T Consensus 317 ~~~~~--g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~ 394 (411)
T PLN02884 317 HFKDI--GVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPN 394 (411)
T ss_pred Hhhcc--CCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCC
Confidence 98654 3336899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred hHHHHHHHHhcCCCCCC
Q 042534 429 DHKWAWVRTVTNQPDFV 445 (447)
Q Consensus 429 ~~~w~~~~~~t~qp~~~ 445 (447)
+++|++++++||||+|.
T Consensus 395 ~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 395 SRMWHRCLTSTGQPDFH 411 (411)
T ss_pred cHHHHHHHHhcCCCCCC
Confidence 99999999999999993
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.4e-93 Score=732.73 Aligned_cols=351 Identities=25% Similarity=0.389 Sum_probs=315.0
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChh--h-hhchhccCCccccccCC
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPK--M-VRGWHKLGGTVLETSRG 156 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~--~-v~~i~~~GGt~LGssR~ 156 (447)
++||||+||||||||||++||++++++...+...+|||+++||+||++++ +++|++. . ++.|+++|||+|||||+
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~--~~~l~~~~~~~~~~i~~~GGt~LGtsR~ 80 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGD--SIEITPAVRANAGLLHRYGGSPIGNSRV 80 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCC--ceeCChhHhhhhhHHHhCCCceeccCCC
Confidence 67999999999999999999999998754433349999999999999998 9999985 3 45599999999999998
Q ss_pred cc-----------------cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCc
Q 042534 157 GF-----------------DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDR 219 (447)
Q Consensus 157 ~~-----------------~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~ 219 (447)
++ ++++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~ 160 (403)
T PRK06555 81 KLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQ 160 (403)
T ss_pred CccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccC
Confidence 64 2689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhcc-------------------CCccEEecCCC
Q 042534 220 SFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSS-------------------RDVDCCLIPEM 280 (447)
Q Consensus 220 s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~-------------------~~ad~ilIPE~ 280 (447)
||||+||+++++++|++++.||.|+++.++|||||||+|||||++++||+ +.||+|||||.
T Consensus 161 t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~ 240 (403)
T PRK06555 161 SLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEM 240 (403)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCC
Confidence 99999999999999999999999966545555999999999999999992 34999999999
Q ss_pred CCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhh---hhcccccCCccccc--hHHHHHHHHHHHhcccCC
Q 042534 281 EFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQ---TEERDESGNLVFLD--VGSWLKTELKKWWARDHP 355 (447)
Q Consensus 281 ~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~---~~~~D~~Gn~~l~~--ig~~L~~~i~~~~~~~~~ 355 (447)
||+++ .+++.|++++++++|+|||||||+.+.+..+.... ..++|++||+++.+ ++++|+++|+++++.+
T Consensus 241 ~~~~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e-- 315 (403)
T PRK06555 241 AFDLE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE-- 315 (403)
T ss_pred CCCHH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC--
Confidence 99998 69999999998899999999999976554433211 22489999999976 6999999999988631
Q ss_pred CceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEE---eCCEEEEecHHHHHhhcCCCCCChHHH
Q 042534 356 GELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGP---INGNYAYIPLEDVAQATNAVNTKDHKW 432 (447)
Q Consensus 356 ~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~---~~~~~~~vPl~~v~~~~k~v~~~~~~w 432 (447)
++|+++|||+|||++||++||+||++||..||+++++|+|| ||++ +|++++++||+++.+ +|.++++++||
T Consensus 316 ----~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~ 389 (403)
T PRK06555 316 ----KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWF 389 (403)
T ss_pred ----ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHH
Confidence 47789999999999999999999999999999999999999 6788 799999999999987 48999999999
Q ss_pred HHHHHhcCCCC
Q 042534 433 AWVRTVTNQPD 443 (447)
Q Consensus 433 ~~~~~~t~qp~ 443 (447)
++++++||||.
T Consensus 390 ~~~~~~~~q~~ 400 (403)
T PRK06555 390 TELLDEIGQPY 400 (403)
T ss_pred HHHHHhhCCCC
Confidence 99999999995
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.3e-89 Score=697.86 Aligned_cols=336 Identities=26% Similarity=0.422 Sum_probs=306.9
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC-c
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG-G 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~-~ 157 (447)
+++||||+||||||||||++||++++++.+++++ +|||+++||+||++++.++++|++++|++|+++|||+|||||. .
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g~-~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~ 81 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGD 81 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHhcCCC-EEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCC
Confidence 3689999999999999999999999999765686 9999999999999983349999999999999999999999973 2
Q ss_pred ------------ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh
Q 042534 158 ------------FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT 225 (447)
Q Consensus 158 ------------~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT 225 (447)
.++++++++|++++||+||+||||||+++|++|++. .+|+||||||||||||++||+||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~T 156 (360)
T PRK14071 82 PFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDT 156 (360)
T ss_pred ccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhH
Confidence 135899999999999999999999999999999863 378999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcE
Q 042534 226 AVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHA 304 (447)
Q Consensus 226 Av~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~ 304 (447)
|+++++++|++++.+|.| |+|++|||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++|+++ ++|+
T Consensus 157 A~~~~~~~id~i~~ta~s-~~rv~ivEvMGR~~G~LAl~~~la~g-a~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~ 231 (360)
T PRK14071 157 AVNIATEALDRLHFTAAS-HNRVMILEVMGRDAGHIALAAGIAGG-ADVILIPEIPYTLE---NVCKKIRERQEEGKNFC 231 (360)
T ss_pred HHHHHHHHHHHHHhhhcc-cCCEEEEEECCCCccHHHHHhHhhcC-CCEEEECCCCCCHH---HHHHHHHHHHHcCCCeE
Confidence 999999999999999998 78999999999999999999999998 99999999999998 699999999985 8999
Q ss_pred EEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHH
Q 042534 305 VLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCT 384 (447)
Q Consensus 305 vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~ 384 (447)
|||||||+.+.. .+. ..++|++||+++.+++++|+++|+++++ +++|+..|||+|||+.||++||++|+
T Consensus 232 iivvsEG~~~~~-g~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g-------~~~r~~~lG~~qRgg~ps~~Dr~~a~ 300 (360)
T PRK14071 232 LVVVSEAVRTEE-GEQ---VTKTQALGEDRYGGIGQYLAEQIAERTG-------AETRVTVLGHIQRGGIPSPRDRLLAS 300 (360)
T ss_pred EEEEcCCCcccc-ccc---ccccccccccccCcHHHHHHHHHHHhcC-------CCeeEEecChhhcCCCCChHHHHHHH
Confidence 999999996431 111 1237999999999999999999998875 45677789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHH
Q 042534 385 LLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVR 436 (447)
Q Consensus 385 ~lG~~AV~~~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~ 436 (447)
+||..||+++++|+||+||+++++++.++||+++++++|.+|+++.+|....
T Consensus 301 ~lG~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~~~ 352 (360)
T PRK14071 301 AFGVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKTAR 352 (360)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999999998899999888888654
No 7
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=7.2e-89 Score=706.61 Aligned_cols=333 Identities=20% Similarity=0.282 Sum_probs=301.7
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhc---hhccCCccccccCC
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRG---WHKLGGTVLETSRG 156 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~---i~~~GGt~LGssR~ 156 (447)
.+||||+||||||||||++||++++++..+.++.+||||++||+||++++ +++|+...++. |.++|||+|||||+
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~--~~~l~~~~~~~i~~i~~~gGt~LgssR~ 80 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDED--LIDLSKESDEALAALAHTPSGALGSCRY 80 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCC--eeeCChhhHhHHHHHhcCCCeEeccCCC
Confidence 48999999999999999999999999975544469999999999999999 99999877777 89999999999998
Q ss_pred cc--------cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 157 GF--------DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 157 ~~--------~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
+. ++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||++||+|||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~ 160 (416)
T PRK14072 81 KLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK 160 (416)
T ss_pred CCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH
Confidence 73 3799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc---CCcEEEEEecCCccchHHHHHhhc-----cCCccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 229 MAQQAISAAHVEAESA---VNGIGLVKLMGRSTGHIALHATLS-----SRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 229 ~~~~ai~~i~~~A~S~---~~~v~iVevMGR~sG~lAl~aaLA-----~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
+++++|+++..|++++ | ||||||+|||+|||||+++||| ++ ||+|||||.||+++ .+++.|++++++
T Consensus 161 ~i~~ai~~l~~D~~~ta~s~-Rv~iVEvMGR~aG~LAl~a~lA~~~~~~g-ad~iliPE~~~~~~---~~~~~i~~~~~~ 235 (416)
T PRK14072 161 YIATSVLEAALDVAAMANTS-KVFILEVMGRHAGWLAAAAALAKQNPDDA-PHLIYLPERPFDEE---KFLADVRAIVKR 235 (416)
T ss_pred HHHHHHHHHHHHHHhcccCc-eEEEEEEeCcchhHHHHHHhhccccCCCC-ccEEEccCCCCCHH---HHHHHHHHHHHh
Confidence 9999999995555442 4 8999999999999999999999 76 99999999999988 799999999988
Q ss_pred CCcEEEEEecCCCCCCchhhhh-hhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCC--CCH
Q 042534 301 NGHAVLVVAEGAGQNMIPRTAA-QTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVP--ANA 377 (447)
Q Consensus 301 k~~~vIvvaEGa~~~~~~~~~~-~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~--p~~ 377 (447)
++|+|||||||+... ..+... ....+|++||+++++++++|+++|+++++ +++|++.|||+|||++ ||+
T Consensus 236 ~~~~ivvVaEG~~~~-~g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~g-------~~~R~~~LG~~QRgg~~~ps~ 307 (416)
T PRK14072 236 YGYCVVVVSEGIRDA-DGKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKLG-------KKVHWAVLDYLQRAARHIASK 307 (416)
T ss_pred CCCeEEEEecCcccc-cccchhccccccCCCCCcccccHHHHHHHHHHHHhC-------CeEEEEeCChhhhCCCCCCCH
Confidence 999999999998431 111110 11236999999999999999999999886 5688999999999998 999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------EEEEecHHHHHhhcCCCCC
Q 042534 378 TDNLYCTLLAHSAIHGVMAGYTGFVSGPING-------NYAYIPLEDVAQATNAVNT 427 (447)
Q Consensus 378 ~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~~-------~~~~vPl~~v~~~~k~v~~ 427 (447)
+||+||++||..||+++++|+||+||+++++ ++..+||+++++++|.+|+
T Consensus 308 ~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~ 364 (416)
T PRK14072 308 TDVEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPP 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCH
Confidence 9999999999999999999999999999998 9999999999998788875
No 8
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=7.7e-88 Score=683.60 Aligned_cols=325 Identities=26% Similarity=0.363 Sum_probs=301.7
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc--
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF-- 158 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~-- 158 (447)
+||||+||||||||||++||++++++. .++ .+||||++||+||++++ +++|+++.+++|+++|||+|||||+++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~-~~g-~~v~G~~~G~~GL~~~~--~~~l~~~~v~~~~~~gGs~LgtsR~~~~~ 76 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAI-AEG-LEVYGIYEGYAGLVEGD--IKELDWESVSDIINRGGTIIGSARCKEFR 76 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHH-HCC-CEEEEEecChHHhCCCC--eEeCCHHHhcchhhCCCeecccCCCCccC
Confidence 589999999999999999999999996 466 49999999999999998 999999999999999999999999874
Q ss_pred ---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 159 ---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 ---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
++++++++|++++||+||+||||||+++|++|++++++++.+|+|||||||||||+++||+|||||||+++++++|+
T Consensus 77 ~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~ 156 (338)
T cd00363 77 TEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAID 156 (338)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCCC
Q 042534 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAGQ 314 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~~ 314 (447)
+++.||.| |+||+|||+|||+|||||++++||++ ||+|||||.||+++..+.+++.|++|+++ ++|+|||||||+.+
T Consensus 157 ~l~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~~-ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~ 234 (338)
T cd00363 157 RIRDTASS-HQRTFVVEVMGRHCGDIALEAGLATG-ADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAID 234 (338)
T ss_pred HHHHhccc-CCCEEEEEECCcCHHHHHHHHHHHhC-CCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcc
Confidence 99999999 89999999999999999999999998 99999999999555555899999999875 89999999999974
Q ss_pred CCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHH
Q 042534 315 NMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGV 394 (447)
Q Consensus 315 ~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~ 394 (447)
.. |++ ..+.+|+++|+++++ +++|+..|||+|||++||++||+||++||..||+++
T Consensus 235 ~~--------------~~~---~~~~~l~~~i~~~~~-------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~ 290 (338)
T cd00363 235 FI--------------PKP---ITEKLLAKLVEERLG-------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELL 290 (338)
T ss_pred cc--------------ccC---chHHHHHHHHHHHcC-------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHH
Confidence 32 111 235689999988875 578889999999999999999999999999999999
Q ss_pred HcCCCceEEEEeCC---EEEEecHHHHHhhcCC--CCCChHHHHHH
Q 042534 395 MAGYTGFVSGPING---NYAYIPLEDVAQATNA--VNTKDHKWAWV 435 (447)
Q Consensus 395 ~~G~tg~~vg~~~~---~~~~vPl~~v~~~~k~--v~~~~~~w~~~ 435 (447)
++|+||+|+++++. ++.++||+++++.+|. ||+++.||+..
T Consensus 291 ~~g~tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 291 LEGTGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred HcCCCCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999999999999 9999999999999988 78999999864
No 9
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=9.5e-88 Score=678.47 Aligned_cols=316 Identities=33% Similarity=0.531 Sum_probs=292.2
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEEC-ChhhhhchhccCCccccccCCcc--
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVL-NPKMVRGWHKLGGTVLETSRGGF-- 158 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L-~~~~v~~i~~~GGt~LGssR~~~-- 158 (447)
|||||||||||||||++||++++++.+.+++ +||||++||+||++++ +++| ++++|+.|+++|||+|||||+++
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g~-~v~g~~~G~~GL~~~~--~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~ 77 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYGW-EVIGIRDGWRGLLEGD--TVPLLDLEDVRGILPRGGTILGSSRTNPFK 77 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCCc-eEEEEccCHHHhCCCC--eEecCCHHHHHHHHhCCCccccCCCCCccc
Confidence 6999999999999999999999988666686 9999999999999988 9999 99999999999999999999863
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|++. +++|||||||||||+++||+|||||||+++++++|
T Consensus 78 ~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~------gi~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i 151 (324)
T TIGR02483 78 YEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK------GLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEAL 151 (324)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc------CCCEEeeccccCCCCcCCccCcCHHHHHHHHHHHH
Confidence 37899999999999999999999999999999862 59999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAG 313 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~ 313 (447)
+++++||.| |+|+||||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++|+++ ++|+|||||||+.
T Consensus 152 ~~i~~ta~S-~~r~~ivEvMGR~~G~LAl~~ala~~-a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~ 226 (324)
T TIGR02483 152 DRLHTTAES-HHRVMVVEVMGRHAGWIALHSGIAGG-ADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAK 226 (324)
T ss_pred HHHHHHHhh-cCCEEEEEEcCCChhHHHHHHHhccC-CCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcc
Confidence 999999999 68999999999999999999999998 99999999999988 699999999987 9999999999996
Q ss_pred CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
.+..... .....+|++||+++.+++++|+++|+++++ +++|...|||+|||+.||++||.+|++||.+||++
T Consensus 227 ~~~~~~~-~~~~~~d~~gh~~~~~~~~~l~~~i~~~~g-------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~ 298 (324)
T TIGR02483 227 PKGGEMV-VQEGVKDAFGHVRLGGIGNWLAEEIERRTG-------IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDL 298 (324)
T ss_pred ccccchh-ccccccccccCcccCcHHHHHHHHHHHhcC-------CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5432111 112358999999999999999999998775 56888899999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCCEEEEecHHHHH
Q 042534 394 VMAGYTGFVSGPINGNYAYIPLEDVA 419 (447)
Q Consensus 394 ~~~G~tg~~vg~~~~~~~~vPl~~v~ 419 (447)
+++|++|+||++++++++++||++++
T Consensus 299 ~~~g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 299 VHEGQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred HHcCCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999999863
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.9e-86 Score=666.94 Aligned_cols=301 Identities=27% Similarity=0.433 Sum_probs=279.4
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c-
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F- 158 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~- 158 (447)
+||||+||||||||||++||++++++. .+++ +|||+++||+||++++ +++|+++.++.|+++|||+|||||++ +
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~-~~g~-~v~G~~~G~~GL~~~~--~~~l~~~~v~~~~~~gGt~LgtsR~~~~~ 76 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI-AEGL-EVYGIRDGYAGLIAGD--IVPLDRYSVSDIINRGGTFLGSARFPEFK 76 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEecCHHHhcCCC--eEeCCHHHhhhHHhCCCeeeccCCCCccC
Confidence 589999999999999999999999985 4676 9999999999999998 99999999999999999999999985 2
Q ss_pred ---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 159 ---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 ---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++||+|||||||+++++++|+
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~ 150 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAID 150 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999884 689999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCCC
Q 042534 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAGQ 314 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~~ 314 (447)
+++++|.| |+||||||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 151 ~i~~ta~s-~~rv~ivEvMGR~~G~LA~~~ala~g-a~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~ 225 (317)
T cd00763 151 RIRDTSSS-HQRISVVEVMGRHCGDIALAAGIAGG-AEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD 225 (317)
T ss_pred HHHHHHhc-CCCEEEEEeCCCChHHHHHHHHHHcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999988 78999999999999999999999998 99999999999988 799999998875 89999999999852
Q ss_pred CCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHH
Q 042534 315 NMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGV 394 (447)
Q Consensus 315 ~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~ 394 (447)
. ..|++.|+++++ +++|+..|||+|||++|+++||++|++||.+||+++
T Consensus 226 ~------------------------~~l~~~l~~~~g-------~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~ 274 (317)
T cd00763 226 V------------------------DELAKEIEEATG-------FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELL 274 (317)
T ss_pred H------------------------HHHHHHHHHHhC-------CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHH
Confidence 1 136667776664 457778899999999999999999999999999999
Q ss_pred HcCCCceEEEEeCCEEEEecHHHHHhhcCCCCC
Q 042534 395 MAGYTGFVSGPINGNYAYIPLEDVAQATNAVNT 427 (447)
Q Consensus 395 ~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~ 427 (447)
++|++|+||++++++++++||+++++.+|.+|+
T Consensus 275 ~~g~~~~mv~~~~~~~~~~pl~~~~~~~k~~~~ 307 (317)
T cd00763 275 LAGKGGLAVGIQNEQLVHHDIIDAIENMKPFKK 307 (317)
T ss_pred HcCCCCeEEEEECCEEEEecHHHHhhCCCCCCH
Confidence 999999999999999999999999998888876
No 11
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=1.1e-85 Score=656.68 Aligned_cols=295 Identities=26% Similarity=0.455 Sum_probs=272.5
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c--
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F-- 158 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~-- 158 (447)
||||+||||||||||++||++++++. .+++ +|||+++||+||++++ +++|+++.+++|+++|||+|||||++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~-~~g~-~v~G~~~G~~GL~~~~--~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~ 76 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAI-YHGF-EVYGIRRGYKGLINGE--IKPLESKNVSGIIHRGGTILGTARCPEFKT 76 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEecCHHHhcCCC--eEeCCHHHHhhHHhCCCceeccCCCCccCC
Confidence 69999999999999999999999985 4676 9999999999999998 99999999999999999999999986 3
Q ss_pred --cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHH
Q 042534 159 --DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 159 --~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~ 236 (447)
++++++++|++++||+||+||||||+++|++|+++ ++++|||||||||||+++||+|||||||+++++++|++
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~ 151 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDK 151 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHH
Confidence 37899999999999999999999999999999986 37999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCCCC
Q 042534 237 AHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAGQN 315 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~~~ 315 (447)
++++|.| |+||||||+|||+|||||++++||++ ||+|||||.||+++ +++++|++|++. ++|+|||||||+...
T Consensus 152 i~~ta~s-~~rv~ivEvMGR~~G~lAl~~~la~g-ad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~~ 226 (301)
T TIGR02482 152 IRDTATS-HERAFVIEVMGRHAGDLALYSGIATG-AEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIVG 226 (301)
T ss_pred HHHHhhc-CCCEEEEEeCCCCHHHHHHHHHHHcC-CCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 9999988 68999999999999999999999998 99999999999998 799999999876 899999999994210
Q ss_pred CchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHH
Q 042534 316 MIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVM 395 (447)
Q Consensus 316 ~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~ 395 (447)
.+..|+++|+++++ +++|+..|||+|||++||++||++|++||.+||++++
T Consensus 227 ----------------------~~~~l~~~l~~~~g-------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~ 277 (301)
T TIGR02482 227 ----------------------SAKEVAKKIEEATG-------IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLL 277 (301)
T ss_pred ----------------------cHHHHHHHHHHhcC-------CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 02346777776553 5788899999999999999999999999999999999
Q ss_pred cCCCceEEEEeCCEEEEecHHHHH
Q 042534 396 AGYTGFVSGPINGNYAYIPLEDVA 419 (447)
Q Consensus 396 ~G~tg~~vg~~~~~~~~vPl~~v~ 419 (447)
+|++|+||++++++++++||++++
T Consensus 278 ~g~~~~mv~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 278 EGKGGVMIGIQNNKIVTHPIEEAL 301 (301)
T ss_pred cCCCCEEEEEECCEEEEeeHHHhC
Confidence 999999999999999999999863
No 12
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=9.3e-85 Score=655.40 Aligned_cols=302 Identities=27% Similarity=0.445 Sum_probs=281.1
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF- 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~- 158 (447)
++||||+||||||||||++|+++++++.. .++ +||||++||+||++++ +++|+++.|++|.++|||+|||||++.
T Consensus 1 mk~i~Il~sGG~apG~Na~i~~~~~~~~~-~g~-~v~g~~~G~~GL~~~~--~~~l~~~~v~~~~~~gGs~LgtsR~~~~ 76 (320)
T PRK03202 1 MKRIGVLTSGGDAPGMNAAIRAVVRTAIS-EGL-EVYGIYDGYAGLLEGD--IVKLDLKSVSDIINRGGTILGSARFPEF 76 (320)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHHH-CCC-eEEEEecChhhhcCCC--EEECCHHHHhhHHhCCCcccccCCCCCc
Confidence 47899999999999999999999999864 565 9999999999999998 999999999999999999999999763
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
++++++++|++++||+||+||||||+++|++|+| .+++|||||||||||+++||+|||||||+++++++|
T Consensus 77 ~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e------~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 77 KDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE------HGIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAI 150 (320)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh------cCCcEEEecccccCCCCCCccCcCHHHHHHHHHHHH
Confidence 3899999999999999999999999999999997 379999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAG 313 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~ 313 (447)
++++.+|.| |+||||||+|||+|||||++++||++ ||+|||||.||+++ ++++.|++|++. ++|+|||||||+.
T Consensus 151 ~~l~~~a~s-~~rv~iVEvMGR~~G~LAl~~ala~~-a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~ 225 (320)
T PRK03202 151 DRLRDTASS-HERVFIVEVMGRHAGDLALHAGIAGG-AEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVM 225 (320)
T ss_pred HHHHHHHhc-cCCEEEEEECCCChHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCC
Confidence 999999998 68999999999999999999999998 99999999999988 699999999876 8999999999985
Q ss_pred CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
+. ..|++.|+++++ +++|+..|||+|||++|+++||++|++||.+||++
T Consensus 226 ~~------------------------~~l~~~i~~~~~-------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~ 274 (320)
T PRK03202 226 PA------------------------EELAKEIEERTG-------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVEL 274 (320)
T ss_pred CH------------------------HHHHHHHHHHhC-------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 31 127777777765 56899999999999999999999999999999999
Q ss_pred HHcCCCceEEEEeCCEEEEecHHHHH-hhcCCCCC
Q 042534 394 VMAGYTGFVSGPINGNYAYIPLEDVA-QATNAVNT 427 (447)
Q Consensus 394 ~~~G~tg~~vg~~~~~~~~vPl~~v~-~~~k~v~~ 427 (447)
+++|++|+||+++++++.++||++++ +++|.+++
T Consensus 275 ~~~g~~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~ 309 (320)
T PRK03202 275 LLEGKGGRMVGIQNNKIVHVPIEEAVENMKHPFDK 309 (320)
T ss_pred HHcCCCCeEEEEECCEEEEEeHHHHHhcCCCCCCH
Confidence 99999999999999999999999999 77677765
No 13
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-83 Score=646.58 Aligned_cols=310 Identities=30% Similarity=0.439 Sum_probs=274.8
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
++||||+||||||||||+|||++|+++.. ++ .+||||++||+||++++ +++|+++.|++++++|||+|||||++ +
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g-~eV~Gi~~Gy~GL~~~~--i~~l~~~~v~~~~~~GGT~lgssR~~~~ 77 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-EG-LEVFGIYNGYLGLLEGD--IKPLTREDVDDLINRGGTFLGSARFPEF 77 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-cC-CEEEEEecchhhhcCCc--ceeccccchhHHHhcCCeEEeeCCCCCc
Confidence 58999999999999999999999999974 46 59999999999999999 99999999999999999999999987 2
Q ss_pred ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
..++++++|++++||+|++||||||+++|+.|+|++ +++|||||||||||+++||+|||||||+++++++|
T Consensus 78 ~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eai 152 (347)
T COG0205 78 KTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAI 152 (347)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHH
Confidence 368999999999999999999999999999999974 59999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHH--hhCCcEEEEEecCC
Q 042534 235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRL--KENGHAVLVVAEGA 312 (447)
Q Consensus 235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~--~~k~~~vIvvaEGa 312 (447)
++++.+|+| |+|++|||||||+|||||++|+||++ +|+|+|||.+|++ .+..++..++++. ++++|++|+++||+
T Consensus 153 d~l~dtass-h~r~~iveVMGR~aG~lAl~aglA~~-a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~ 229 (347)
T COG0205 153 DNLRDTASS-HERIFIVEVMGRHAGWLALAAGLATG-ADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGA 229 (347)
T ss_pred HHHHHHHhC-cCCEEEEEecCcChhHHHHHHHHhcC-CCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccc
Confidence 999977766 89999999999999999999999999 9999999999987 2226777776643 46899999999999
Q ss_pred CCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHH
Q 042534 313 GQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIH 392 (447)
Q Consensus 313 ~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~ 392 (447)
.+... .+|+..+. .+++++... ..++|...|||+|||++|++|||+||++||..||+
T Consensus 230 ~~~~~-----------~~~~~~~~--------~i~~~~~~~----~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~ 286 (347)
T COG0205 230 IDQIG-----------ENGAELLA--------AIEELLALG----DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVD 286 (347)
T ss_pred ccccc-----------cchhhHHH--------HHHHHhhhc----ccceEEEeccccccCCCCchHHHHHHHHHHHHHHH
Confidence 75421 13444333 344443321 15688888999999999999999999999999999
Q ss_pred HHHcCCCceEEEEeCCEEEEecHHHHHhhcCC
Q 042534 393 GVMAGYTGFVSGPINGNYAYIPLEDVAQATNA 424 (447)
Q Consensus 393 ~~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~ 424 (447)
++++|++|+||+++|+++++.|+++.+...+.
T Consensus 287 ~l~~g~~~~~v~i~~~~~v~~~~~~~~~~~~~ 318 (347)
T COG0205 287 LLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKM 318 (347)
T ss_pred HHHcCCCCceEEEeCCeeEeehhHhhhhhhhh
Confidence 99999999999999999999999998876554
No 14
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.7e-82 Score=673.99 Aligned_cols=376 Identities=22% Similarity=0.342 Sum_probs=321.9
Q ss_pred CCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCC
Q 042534 52 GAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRN 131 (447)
Q Consensus 52 ~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~ 131 (447)
..||++.+.+...|++.-.-.+ .++.+||||+||||||||||+||+++++++...+...+||||++||+||++++
T Consensus 42 ~~fp~~~~~~~~~~~~~~~~~~---~~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~-- 116 (539)
T TIGR02477 42 ELFPNTYGLPIITFEPGEASPD---EHQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNN-- 116 (539)
T ss_pred HhChHhhCCccEEEecCCCCcc---cccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCC--
Confidence 4467777777777876321111 24568999999999999999999999999877666679999999999999999
Q ss_pred eEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 132 PLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 132 ~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+++||++.|+.|+++||| +|||||+++ ++++++++|++++||+||+||||||+++|+.|++++++++++|+||||
T Consensus 117 ~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGI 196 (539)
T TIGR02477 117 YVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGV 196 (539)
T ss_pred eEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999997 999999885 589999999999999999999999999999999999999999999999
Q ss_pred ccccccccc--CcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCC--
Q 042534 207 PKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF-- 282 (447)
Q Consensus 207 PkTIDNDi~--~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f-- 282 (447)
|||||||++ +||+|||||||+++++++|++++.|+.|++++|+|||+|||+|||||++||||++ ||+|||||+++
T Consensus 197 PkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~-~~iilIpE~~~~~ 275 (539)
T TIGR02477 197 PKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTH-PNVCIIGEEVAAK 275 (539)
T ss_pred eeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhcC-CCEEEecCccccc
Confidence 999999998 5999999999999999999999999999889999999999999999999999998 99999999987
Q ss_pred --Ccch-hhhHHHHHHHHHh-hCCcEEEEEecCCCCCCchh--------------------------------hh-----
Q 042534 283 --YLEG-KGGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIPR--------------------------------TA----- 321 (447)
Q Consensus 283 --~le~-~~~l~~~i~~r~~-~k~~~vIvvaEGa~~~~~~~--------------------------------~~----- 321 (447)
+|+. .+.+++.|.+|.. +++|+|||||||+... +|+ +.
T Consensus 276 ~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~-ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~ 354 (539)
T TIGR02477 276 KMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEF-IPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFES 354 (539)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhh-cchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhh
Confidence 5553 3456677777765 5899999999999541 111 00
Q ss_pred -----hhh--hcccccCCccccch--HHHHHHHHHHHhcccCCCceeEEeEe----CCCccccCCCCCHhhHHHHHHHHH
Q 042534 322 -----AQT--EERDESGNLVFLDV--GSWLKTELKKWWARDHPGELFTVKYI----DPTYMIRAVPANATDNLYCTLLAH 388 (447)
Q Consensus 322 -----~~~--~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~~~~~~~k~i----~~gy~~Rg~~p~~~Dr~~a~~lG~ 388 (447)
... .++|++||++++++ +++|+++++++++++++...++.|++ .+||++||+.||.||+.||+.||+
T Consensus 355 lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~ 434 (539)
T TIGR02477 355 LPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGY 434 (539)
T ss_pred cchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHH
Confidence 000 24899999999988 88999999888876543334667777 679999999999999999999999
Q ss_pred HHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhhc------------CCCCCChHHHHH
Q 042534 389 SAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQAT------------NAVNTKDHKWAW 434 (447)
Q Consensus 389 ~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~~------------k~v~~~~~~w~~ 434 (447)
.|++++++|+||+|++++| |++..+|+..+++.+ +.||.++..++.
T Consensus 435 ~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~ 499 (539)
T TIGR02477 435 TAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERRHGEMKPVIKKALVDLEGKPFKK 499 (539)
T ss_pred HHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChhhhCCCCCccceeeeeCCCCHHHHH
Confidence 9999999999999999975 677999999999743 346666654443
No 15
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=9.5e-81 Score=661.80 Aligned_cols=373 Identities=24% Similarity=0.369 Sum_probs=320.2
Q ss_pred CCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCC
Q 042534 52 GAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRN 131 (447)
Q Consensus 52 ~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~ 131 (447)
..||++++.+...|++..+... ..+||||+||||||||||+||+++++++...+...+||||++||+||++++
T Consensus 47 ~~fp~~~~~~~~~~~~~~~~~~-----~~~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~-- 119 (555)
T PRK07085 47 ELFPNTYGLPYVTFVKGSESSS-----KPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGK-- 119 (555)
T ss_pred HhChHhhCCccEEEEeCCCCcc-----cceEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCC--
Confidence 4577777778888888654332 258999999999999999999999997766666679999999999999999
Q ss_pred eEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 132 PLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 132 ~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+++|+++.|+.|+++||| +|||||+++ ++++++++|++++||+||+||||||+++|+.|++++++++++|+||||
T Consensus 120 ~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 120 YIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred eEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 999999999999999998 999999885 489999999999999999999999999999999999999999999999
Q ss_pred ccccccccc--CcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCC----
Q 042534 207 PKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEM---- 280 (447)
Q Consensus 207 PkTIDNDi~--~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~---- 280 (447)
|||||||++ +||+|||||||+++++++|++++.||.|+++||+|||+|||+|||||++||||++ ||+|||||+
T Consensus 200 PkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~-~~iilIpE~~~~~ 278 (555)
T PRK07085 200 PKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTH-PNICLISEEVAEK 278 (555)
T ss_pred eeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcC-CCEEEecCccccc
Confidence 999999999 5599999999999999999999999999889999999999999999999999998 999999999
Q ss_pred CCCcch-hhhHHHHHHHHH-hhCCcEEEEEecCCCCCCchhhh---------------------------------h---
Q 042534 281 EFYLEG-KGGLVEFLDNRL-KENGHAVLVVAEGAGQNMIPRTA---------------------------------A--- 322 (447)
Q Consensus 281 ~f~le~-~~~l~~~i~~r~-~~k~~~vIvvaEGa~~~~~~~~~---------------------------------~--- 322 (447)
+++|++ .+.+++.|.+|. ++++|+|||||||+.. ++++.. .
T Consensus 279 ~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie-~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s 357 (555)
T PRK07085 279 KMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIE-FIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPES 357 (555)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchh-cCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHH
Confidence 566664 233444555565 4689999999999974 122100 0
Q ss_pred ------------h--hhcccccCCccccch--HHHHHHHHHHHhcccCCC----ceeEEeEeCCCccccCCCCCHhhHHH
Q 042534 323 ------------Q--TEERDESGNLVFLDV--GSWLKTELKKWWARDHPG----ELFTVKYIDPTYMIRAVPANATDNLY 382 (447)
Q Consensus 323 ------------~--~~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~~----~~~~~k~i~~gy~~Rg~~p~~~Dr~~ 382 (447)
. ..++|++||++++++ +++|+++|++++++++.. ..+..+...+||++||+.||.||+.|
T Consensus 358 ~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~y 437 (555)
T PRK07085 358 AKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADY 437 (555)
T ss_pred HHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHH
Confidence 0 015899999999988 899999999988764321 13666778899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhhc------------CCCCCChHHHH
Q 042534 383 CTLLAHSAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQAT------------NAVNTKDHKWA 433 (447)
Q Consensus 383 a~~lG~~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~~------------k~v~~~~~~w~ 433 (447)
|+.||+.|++++++|+||+|++++| |++..+||..+++.+ +.||.++..++
T Consensus 438 ay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~ 507 (555)
T PRK07085 438 CYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLTMMMNMERRHGKEKPVIKKALVDLDGPPFK 507 (555)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhcHHhhCCCCCceeeeeeeCCCCHHHH
Confidence 9999999999999999999999986 567899999999753 34667665544
No 16
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.9e-81 Score=668.51 Aligned_cols=367 Identities=22% Similarity=0.332 Sum_probs=323.2
Q ss_pred CCCCCCCCCcceeEEe---cCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccC
Q 042534 52 GAFSDSDPRVHVAYHR---AGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYST 128 (447)
Q Consensus 52 ~~~~~~~~~~~~~~~~---agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~ 128 (447)
..||++++.+...|.+ +||+.++++++..+|||||||||||||||+||+++++++...+...+||||++||+||+++
T Consensus 48 ~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~ 127 (610)
T PLN03028 48 RAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQ 127 (610)
T ss_pred HhChhhhCCcceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCC
Confidence 4577777778888886 6799999999998999999999999999999999999997766567999999999999999
Q ss_pred CCCeEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceE
Q 042534 129 TRNPLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGV 203 (447)
Q Consensus 129 ~~~~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~V 203 (447)
+ +++||++.|+.|+++||+ +|||||.++ ++++++++|++++||+||+||||||+++|++|++++++++.+|+|
T Consensus 128 ~--~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~V 205 (610)
T PLN03028 128 K--TLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKV 205 (610)
T ss_pred C--eEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceE
Confidence 9 999999999999999999 899999774 479999999999999999999999999999999999999999999
Q ss_pred eeeccccccccc--CcCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCC
Q 042534 204 VGIPKTVDNDVG--IIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEME 281 (447)
Q Consensus 204 VgIPkTIDNDi~--~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~ 281 (447)
||||||||||++ +||+|||||||+++++++|++++.||.|+++||+|||+|||+|||||++||||++ ||+|||||+.
T Consensus 206 IGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~-pniilI~EE~ 284 (610)
T PLN03028 206 VGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSH-PNMVILGEEV 284 (610)
T ss_pred EEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcC-CCEEEecCcc
Confidence 999999999998 8999999999999999999999999999778999999999999999999999998 9999999853
Q ss_pred -CC---cch-hhhHHHHHHHHH-hhCCcEEEEEecCCCCCCchhhh----------------------------------
Q 042534 282 -FY---LEG-KGGLVEFLDNRL-KENGHAVLVVAEGAGQNMIPRTA---------------------------------- 321 (447)
Q Consensus 282 -f~---le~-~~~l~~~i~~r~-~~k~~~vIvvaEGa~~~~~~~~~---------------------------------- 321 (447)
++ |.. .+.+++.|++|+ ++++|+|||||||+... +++..
T Consensus 285 ~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGlie~-ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~l 363 (610)
T PLN03028 285 AASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLIES-IPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFL 363 (610)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCcccc-CchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhc
Confidence 32 232 247888999998 46899999999999743 22200
Q ss_pred ----h--hhhcccccCCccccc--hHHHHHHHHHHHhcccCC-----CceeEEeEeCCCccccCCCCCHhhHHHHHHHHH
Q 042534 322 ----A--QTEERDESGNLVFLD--VGSWLKTELKKWWARDHP-----GELFTVKYIDPTYMIRAVPANATDNLYCTLLAH 388 (447)
Q Consensus 322 ----~--~~~~~D~~Gn~~l~~--ig~~L~~~i~~~~~~~~~-----~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~ 388 (447)
. ....+|++||+++++ .+++|.++++++++.+.. +..++.....+||.+||+.||.||+.||+.||+
T Consensus 364 P~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~ 443 (610)
T PLN03028 364 PPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH 443 (610)
T ss_pred cHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHH
Confidence 0 012479999999998 677888888887766532 213566667899999999999999999999999
Q ss_pred HHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhhc
Q 042534 389 SAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQAT 422 (447)
Q Consensus 389 ~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~~ 422 (447)
.|+.++.+|+||+|++++| |++..+||..+++.+
T Consensus 444 ~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m~~~ 484 (610)
T PLN03028 444 ICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMSVK 484 (610)
T ss_pred HHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHhhHH
Confidence 9999999999999999975 888999999998743
No 17
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.9e-80 Score=657.47 Aligned_cols=366 Identities=24% Similarity=0.332 Sum_probs=318.8
Q ss_pred cCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCC
Q 042534 51 CGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTR 130 (447)
Q Consensus 51 ~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~ 130 (447)
+..|+++++.+...|.++-+... .|..+||||+||||||||||++|+++++++...+...+||||++||+||++++
T Consensus 46 ~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~- 121 (550)
T cd00765 46 AKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCD- 121 (550)
T ss_pred HHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCC-
Confidence 34578888888888998643222 26678999999999999999999999999876655679999999999999999
Q ss_pred CeEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 131 NPLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 131 ~~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
+++|+++.|+.|+++||| +|||||+++ ++++++++|++++||+||+||||||+++|+.|+++++++|++|+|||
T Consensus 122 -~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIG 200 (550)
T cd00765 122 -YIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIG 200 (550)
T ss_pred -eEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999 999999875 48999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCc--CcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCC-
Q 042534 206 IPKTVDNDVGII--DRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF- 282 (447)
Q Consensus 206 IPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f- 282 (447)
||||||||++++ |+|||||||+++++++|++++.||.|++++++|||+|||+|||||++||||++ ||+|||||++|
T Consensus 201 VPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~-p~lilIpE~~~~ 279 (550)
T cd00765 201 VPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTH-PNICIISEEVSA 279 (550)
T ss_pred EeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcC-CCEEEecCcccc
Confidence 999999999985 99999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ---Ccchh-hhHHHHHHHHHh-hCCcEEEEEecCCCCCCchh--------------------------------------
Q 042534 283 ---YLEGK-GGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIPR-------------------------------------- 319 (447)
Q Consensus 283 ---~le~~-~~l~~~i~~r~~-~k~~~vIvvaEGa~~~~~~~-------------------------------------- 319 (447)
+|++. +.+++.|++|.. +++|+|||||||+... +|+
T Consensus 280 ~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~-ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 358 (550)
T cd00765 280 QKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEF-IPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLL 358 (550)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhh-CchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhcc
Confidence 54421 245556666654 6899999999999751 222
Q ss_pred -----------hhhh--hhcccccCCccccch--HHHHHHHHHHHhcccCCC----ceeEEeEeCCCccccCCCCCHhhH
Q 042534 320 -----------TAAQ--TEERDESGNLVFLDV--GSWLKTELKKWWARDHPG----ELFTVKYIDPTYMIRAVPANATDN 380 (447)
Q Consensus 320 -----------~~~~--~~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~~----~~~~~k~i~~gy~~Rg~~p~~~Dr 380 (447)
.... ..++|++||++++++ +++|++++++++++++.. ..++...+.+||.|||+.||.||+
T Consensus 359 ~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~ 438 (550)
T cd00765 359 PKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDA 438 (550)
T ss_pred ccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHH
Confidence 1111 125899999999988 999999999988764211 125666788999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhhcC
Q 042534 381 LYCTLLAHSAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQATN 423 (447)
Q Consensus 381 ~~a~~lG~~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~~k 423 (447)
.||+.||+.|++++.+|+||+|++++| |++..+||..+++.+|
T Consensus 439 ~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl~~~mn~e~ 488 (550)
T cd00765 439 DYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPLTMLMNMER 488 (550)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccHHHHhcccc
Confidence 999999999999999999999999975 8899999999998643
No 18
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.2e-80 Score=679.58 Aligned_cols=330 Identities=24% Similarity=0.308 Sum_probs=290.9
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc--
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF-- 158 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~-- 158 (447)
+||||+||||||||||++||++|+++. .+++ +||||++||+||+++..++++|+|++|++|+++|||+|||||++.
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~-~~g~-~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAI-YVGC-RVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 589999999999999999999999985 4675 999999999999999223999999999999999999999999873
Q ss_pred ---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHH-----------------HHHHcCCcceEeeecccccccccCcC
Q 042534 159 ---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD-----------------EIQRRKINVGVVGIPKTVDNDVGIID 218 (447)
Q Consensus 159 ---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~-----------------~~~~~~~~i~VVgIPkTIDNDi~~tD 218 (447)
..++++++|++++||+||+||||||+++|+.|++ +..+++.+++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 3589999999999999999999999999997765 34556678999999999999999999
Q ss_pred cccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHH-
Q 042534 219 RSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNR- 297 (447)
Q Consensus 219 ~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r- 297 (447)
+|||||||+++++++|+++++||.| |+|+||||||||+|||||+++|||++ ||+|||||.||+.+-++++++.++++
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~S-h~R~fvvEvMGR~~G~LAl~aalA~g-ad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQS-HQRAFVVEVMGRHCGYLALMAAIATG-ADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhc-cCCEEEEEEcCccccHHHHHHHhccC-CCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999 78999999999999999999999998 99999999999955334677777664
Q ss_pred HhhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCH
Q 042534 298 LKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANA 377 (447)
Q Consensus 298 ~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~ 377 (447)
.++++|+|||||||+. |+.||+.. ..+|+++|++.++ +++|...|||+|||++||+
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g-------~~~R~~~LGh~QRgg~Psa 292 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLG-------LDTRITVLGHVQRGGAPSA 292 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcC-------CceEEeecChhhcCCCCCH
Confidence 4468999999999984 34455432 3467777776654 5678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCCCC--hHHHHHHHHh
Q 042534 378 TDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVNTK--DHKWAWVRTV 438 (447)
Q Consensus 378 ~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~~~--~~~w~~~~~~ 438 (447)
+||++|++||..||+++++|++ ++||++++++++++||+++++++|.|+.. ...|...++.
T Consensus 293 ~Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~ 358 (745)
T TIGR02478 293 YDRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRL 358 (745)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHh
Confidence 9999999999999999999997 99999999999999999999999999864 3455555444
No 19
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=6.1e-80 Score=673.44 Aligned_cols=332 Identities=20% Similarity=0.285 Sum_probs=286.9
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+.+||||+||||||||||++||++|+++. .+|+ +||||++||+||++++.++++|+|++|++|+++|||+|||||++.
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~-~~g~-~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI-YVGA-KVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH-HCCC-EEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 46899999999999999999999999985 4565 999999999999998445999999999999999999999999873
Q ss_pred -----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH-----------------HHHHHcCCcceEeeecccccccccC
Q 042534 159 -----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF-----------------DEIQRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 159 -----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~-----------------~~~~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
.+++++++|++++||+||+||||||+++|+.|. ++.++++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 368999999999999999999999999999664 3445566789999999999999999
Q ss_pred cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHH
Q 042534 217 IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDN 296 (447)
Q Consensus 217 tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~ 296 (447)
||+|||||||++.++++|++++.||.| |+|+||||||||+|||||++++||++ ||+|||||.||+.+-++.+++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~S-h~R~fVVEvMGR~~G~LAl~aglA~g-Ad~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQS-HQRTFVLEVMGRHCGYLALVSGLATG-ADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCCCchHHHHHHHhccC-CCEEEecCCCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999 68999999999999999999999998 9999999999982112245555655
Q ss_pred HH-hhCCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCC
Q 042534 297 RL-KENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPA 375 (447)
Q Consensus 297 r~-~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p 375 (447)
+. ++|+++|||||||+. |+.|+... +.+|++.|+++++ +++|...|||+|||+.|
T Consensus 238 ~~~~gk~~~iIVVaEGa~--------------d~~g~~i~---~~~l~~~l~~~~g-------~d~R~t~LGh~QRGG~P 293 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAI--------------DDQLKPIT---SEDVKDLVVERLG-------LDTRVTTLGHVQRGGTP 293 (762)
T ss_pred HHhcCCCcEEEEEeCCCc--------------cccCCCcc---HHHHHHHHHHhcC-------CCeeEeecChhhcCCCC
Confidence 44 357899999999985 23344322 3467888877664 56888899999999999
Q ss_pred CHhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCEEEEecHHHHHhhcCCCC--CChHHHHHHHHh
Q 042534 376 NATDNLYCTLLAHSAIHGVMAGYT---GFVSGPINGNYAYIPLEDVAQATNAVN--TKDHKWAWVRTV 438 (447)
Q Consensus 376 ~~~Dr~~a~~lG~~AV~~~~~G~t---g~~vg~~~~~~~~vPl~~v~~~~k~v~--~~~~~w~~~~~~ 438 (447)
+++||+||++||..||+++++|++ ++||++++++++++||.++++.+|.|. .+...|.+....
T Consensus 294 sa~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~l 361 (762)
T cd00764 294 SAFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAAL 361 (762)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHh
Confidence 999999999999999999999986 899999999999999999999998884 234455544443
No 20
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.2e-79 Score=673.89 Aligned_cols=341 Identities=21% Similarity=0.268 Sum_probs=297.9
Q ss_pred ecCCcccccc-CCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhc
Q 042534 67 RAGPRKQIFF-EPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHK 145 (447)
Q Consensus 67 ~agpr~~~~f-~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~ 145 (447)
++.|+....+ ..+.+||||+||||||||||++||++++.+. .++. +||||++||+||++++ +.+|++..|++|++
T Consensus 375 ~~~~~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~-~~g~-~V~Gi~~G~~GL~~~~--~~~l~~~~v~~~~~ 450 (745)
T TIGR02478 375 IPDQDKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAI-ARGH-TVIAIHNGFSGLARGD--VRELTWSDVEGWVG 450 (745)
T ss_pred ccCCccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHH-hCCC-EEEEEecChhhhccCC--eecCCHHHHHHHHh
Confidence 4555555433 3445899999999999999999999999885 4664 9999999999999999 99999999999999
Q ss_pred cCCccccccCCc--ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccC
Q 042534 146 LGGTVLETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFG 222 (447)
Q Consensus 146 ~GGt~LGssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~G 222 (447)
+|||+|||||+. .++++++++|++++||+||+||||||+++|.+|+++..+.. ++|+||||||||||||++||+|||
T Consensus 451 ~GGt~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~G 530 (745)
T TIGR02478 451 EGGSELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLG 530 (745)
T ss_pred cCCcccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCC
Confidence 999999999985 37999999999999999999999999999999998855543 789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh--
Q 042534 223 FQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-- 300 (447)
Q Consensus 223 FdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-- 300 (447)
||||+++++++|++++++|.|+++||||||+|||+|||||+++|||++ ||+|||||++|++++..+.++.+.+|++.
T Consensus 531 fdTA~~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~g-ad~iliPE~~~~~~~l~~~v~~i~~~~~~~~ 609 (745)
T TIGR02478 531 SDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATG-ADAAYIPEEGISLKDLQEDIEHLKEKFAHGN 609 (745)
T ss_pred HHHHHHHHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999778999999999999999999999998 99999999999999655556678787765
Q ss_pred CCcEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhH
Q 042534 301 NGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDN 380 (447)
Q Consensus 301 k~~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr 380 (447)
+++.+|+++||+...+ ....|++.+++..+. .+++|+.+|||+|||++||++||
T Consensus 610 ~~~~iiv~~Eg~~~~~---------------------~~~~l~~~i~~e~~~-----~~~~R~~~LG~~QRgg~ps~~Dr 663 (745)
T TIGR02478 610 RAGKLILRNENASKNY---------------------TTDFIARIISEEAKG-----RFDARTAVLGHMQQGGSPSPFDR 663 (745)
T ss_pred CCceEEEEeCCCccCC---------------------CHHHHHHHHHHHhcC-----CCceEeccCCccccCCCCCHHHH
Confidence 5789999999974321 123466666544331 27899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC------------CCceEEEEeCCEEEEecHHHHHhh-c--CCCCCChHHHHHHHHh
Q 042534 381 LYCTLLAHSAIHGVMAG------------YTGFVSGPINGNYAYIPLEDVAQA-T--NAVNTKDHKWAWVRTV 438 (447)
Q Consensus 381 ~~a~~lG~~AV~~~~~G------------~tg~~vg~~~~~~~~vPl~~v~~~-~--k~v~~~~~~w~~~~~~ 438 (447)
++|++||..||+++++| ++++||+++|++++++||+++.+. + +.--|+.+||..+++.
T Consensus 664 ~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 664 NRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred HHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 99999999999999998 799999999999999999986543 3 2334889999999876
No 21
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=3.4e-79 Score=649.16 Aligned_cols=365 Identities=22% Similarity=0.294 Sum_probs=314.2
Q ss_pred cCCCCCCCCCcceeEEecC-CccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC
Q 042534 51 CGAFSDSDPRVHVAYHRAG-PRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT 129 (447)
Q Consensus 51 ~~~~~~~~~~~~~~~~~ag-pr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~ 129 (447)
...||++++.+...|++.. +... .+..+|||||||||||||||+||+++++++...+...+||||++||+||++++
T Consensus 69 ~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~ 145 (568)
T PLN02251 69 AKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCK 145 (568)
T ss_pred HHhChHhhCCceEEEeeccCcccc---ccccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCC
Confidence 3457777777888888732 2222 24568999999999999999999999999976555569999999999999999
Q ss_pred CCeEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEe
Q 042534 130 RNPLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVV 204 (447)
Q Consensus 130 ~~~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VV 204 (447)
+++|+++.++.|+++||+ +|||+|+++ ++++++++|++++||+||+||||||+++|+.|++++++++.+|+||
T Consensus 146 --~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VI 223 (568)
T PLN02251 146 --YVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVI 223 (568)
T ss_pred --eEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEE
Confidence 999999999999999999 999999874 5899999999999999999999999999999999999999999999
Q ss_pred eecccccccccCcC--cccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCC
Q 042534 205 GIPKTVDNDVGIID--RSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF 282 (447)
Q Consensus 205 gIPkTIDNDi~~tD--~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f 282 (447)
|||||||||++++| +|||||||+++++++|++++.||.|++++++|||+|||+|||||++||||++ ||+|||||+++
T Consensus 224 GVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat~-pniilIpEe~~ 302 (568)
T PLN02251 224 GCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVA 302 (568)
T ss_pred EeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhhC-CCEEEecCccc
Confidence 99999999999999 6999999999999999999999999777888999999999999999999998 99999999954
Q ss_pred ----Ccchh-hhHHHHHHHHHh-hCCcEEEEEecCCCCCCchhh------------------------------------
Q 042534 283 ----YLEGK-GGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIPRT------------------------------------ 320 (447)
Q Consensus 283 ----~le~~-~~l~~~i~~r~~-~k~~~vIvvaEGa~~~~~~~~------------------------------------ 320 (447)
++++. +.+++.|++|.. +++|+||||+||+.. ++++.
T Consensus 303 ~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie-~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~ 381 (568)
T PLN02251 303 AKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLID-FIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDF 381 (568)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchh-hCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHh
Confidence 45322 235556677664 689999999999942 12211
Q ss_pred ----hhh--hhcccccCCccccc--hHHHHHHHHHHHhcccCCC----ceeEEeEeCCCccccCCCCCHhhHHHHHHHHH
Q 042534 321 ----AAQ--TEERDESGNLVFLD--VGSWLKTELKKWWARDHPG----ELFTVKYIDPTYMIRAVPANATDNLYCTLLAH 388 (447)
Q Consensus 321 ----~~~--~~~~D~~Gn~~l~~--ig~~L~~~i~~~~~~~~~~----~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~ 388 (447)
... ..++|++||++++. .+++|++++++++++++.. ..++.+...+||.+||+.||.||+.||+.||+
T Consensus 382 lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~ 461 (568)
T PLN02251 382 LPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGY 461 (568)
T ss_pred CcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHH
Confidence 000 12489999999998 7889999999888764321 13567788899999999999999999999999
Q ss_pred HHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhhc
Q 042534 389 SAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQAT 422 (447)
Q Consensus 389 ~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~~ 422 (447)
.|+.++.+|+||+|++++| |++..+||..+++.+
T Consensus 462 ~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e 502 (568)
T PLN02251 462 GAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVE 502 (568)
T ss_pred HHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhh
Confidence 9999999999999999975 788999999999853
No 22
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=3.8e-76 Score=658.18 Aligned_cols=365 Identities=24% Similarity=0.297 Sum_probs=311.7
Q ss_pred cCCCCCCCCCcceeEEecCC--ccccccCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccC
Q 042534 51 CGAFSDSDPRVHVAYHRAGP--RKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYST 128 (447)
Q Consensus 51 ~~~~~~~~~~~~~~~~~agp--r~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~ 128 (447)
+..||++++.+...|+++.- ...-.+ ..+|||||||||||||||+||+++++.+...+...+||||++||+||+++
T Consensus 73 ~~~fp~t~~~p~~~~~~~~~~~~~~~~~--~~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~ 150 (1328)
T PTZ00468 73 SSYFPLTSGNSLVKFEAISDGSSSWKKF--PARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSE 150 (1328)
T ss_pred HHhCccccCCcceEEeecCCCccccccc--cCCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCC
Confidence 34578888888888887421 111112 34899999999999999999999999986545556999999999999999
Q ss_pred CCCeEECChhhhhchhccCCc-cccccCCcc----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceE
Q 042534 129 TRNPLVLNPKMVRGWHKLGGT-VLETSRGGF----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGV 203 (447)
Q Consensus 129 ~~~~~~L~~~~v~~i~~~GGt-~LGssR~~~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~V 203 (447)
+ +++|+++.|+.|+++||| +|||+|.++ ++++++++|++++||+||+||||||+++|++|+++++++|++++|
T Consensus 151 ~--~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~V 228 (1328)
T PTZ00468 151 R--YRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVV 228 (1328)
T ss_pred C--eEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeE
Confidence 8 999999999999999998 999999885 489999999999999999999999999999999999999999999
Q ss_pred eeecccccccccC--cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCC
Q 042534 204 VGIPKTVDNDVGI--IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEME 281 (447)
Q Consensus 204 VgIPkTIDNDi~~--tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~ 281 (447)
||||||||||+++ ||+|||||||+++++++|++++.+|.|+++||+|||+|||+|||||++||||++ ||+|||||++
T Consensus 229 IGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtg-aniiLIPEe~ 307 (1328)
T PTZ00468 229 VGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTR-ANMILIGEEI 307 (1328)
T ss_pred EEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcC-CCEEEecCcC
Confidence 9999999999985 899999999999999999999999999889999999999999999999999998 9999999998
Q ss_pred CCc----ch-hhhHHHHHHHHHh-hCCcEEEEEecCCCCCCchhhh----------------------------------
Q 042534 282 FYL----EG-KGGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIPRTA---------------------------------- 321 (447)
Q Consensus 282 f~l----e~-~~~l~~~i~~r~~-~k~~~vIvvaEGa~~~~~~~~~---------------------------------- 321 (447)
++. ++ .+.+++.|.+|++ +++|+||||+||+... +++..
T Consensus 308 ~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGlief-Ipe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~l 386 (1328)
T PTZ00468 308 KEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEF-IPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLEL 386 (1328)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcccc-ccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhC
Confidence 873 32 2245556666654 4899999999999631 12111
Q ss_pred ----hh--hhcccccCCccccchH--HHHHHHHHHHhcccCCC-ceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHH
Q 042534 322 ----AQ--TEERDESGNLVFLDVG--SWLKTELKKWWARDHPG-ELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIH 392 (447)
Q Consensus 322 ----~~--~~~~D~~Gn~~l~~ig--~~L~~~i~~~~~~~~~~-~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~ 392 (447)
.. ..++|++||++++.++ ++|+++++++++++++. ..+.++...+||.|||+.||.||+.||+.||+.|++
T Consensus 387 P~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~ 466 (1328)
T PTZ00468 387 PSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAA 466 (1328)
T ss_pred cHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHH
Confidence 00 1258999999999977 89999999888654221 012355567999999999999999999999999999
Q ss_pred HHHcCCCceEEEEeC-------CEEEEecHHHHHhh
Q 042534 393 GVMAGYTGFVSGPIN-------GNYAYIPLEDVAQA 421 (447)
Q Consensus 393 ~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~ 421 (447)
++.+|+||+|++++| |++..+||..+++.
T Consensus 467 l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~ 502 (1328)
T PTZ00468 467 LIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNI 502 (1328)
T ss_pred HHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhH
Confidence 999999999999975 78899999999884
No 23
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1.7e-76 Score=587.20 Aligned_cols=275 Identities=34% Similarity=0.529 Sum_probs=243.8
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c-
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F- 158 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~- 158 (447)
|||||+||||||||||++|+++++++. .+++ +||||++||+||++++ +++|+++.++.|.++|||+|||||++ +
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~-~~g~-~v~g~~~G~~GL~~~~--~~~l~~~~v~~~~~~gGt~lgtsR~~~~~ 76 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI-RRGW-EVYGIRNGFEGLLNGD--IIELTWEDVRGIINQGGTILGTSRFKPFK 76 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH-HTTS-EEEEETTHHHHHHHCT--EEEECGGGGTTGGGSSSSTTTBBBSSGGG
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH-hcCC-EEEEEEccCccceeee--EEeecccCccccccCCCcEeCcccCcccc
Confidence 689999999999999999999999985 5675 9999999999999998 99999999999999999999999986 2
Q ss_pred ---cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 159 ---DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 ---~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
..++++++|++++||+||+||||||+++|++|++++ .++|||||||||||+++||+|||||||+++++++|+
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~-----~i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~ 151 (282)
T PF00365_consen 77 DPEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEF-----GIPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAID 151 (282)
T ss_dssp SHHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHH-----HSEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC-----ceEEEEEeccccCCcCCCCCCcccCchhHHHHHHHH
Confidence 357899999999999999999999999999999875 389999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCCC
Q 042534 236 AAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAGQ 314 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~~ 314 (447)
+++.+|.| ++||||||+|||+|||||++++||++ +|+|||||.|++++ .+++.|+++++. ++|+|||||||+..
T Consensus 152 ~i~~~a~s-~~rv~ivEvmGr~~G~LAl~~ala~~-a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~ 226 (282)
T PF00365_consen 152 NIKTTARS-HNRVFIVEVMGRNAGWLALAAALATG-ADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKD 226 (282)
T ss_dssp HHHHHHHH-STEEEEEEESSTTSTHHHHHHHHHHT-SSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBS
T ss_pred HHHHhhcc-cCCceEEEeCCCCcCHHHHHHHhccC-CCEEEEeccccchH---HHHHHhhhhhcccCceEEEEecccccc
Confidence 99999988 78999999999999999999999998 99999999999887 799999998865 78999999999964
Q ss_pred CCchhhhhhhhcccccCCccccch-HHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534 315 NMIPRTAAQTEERDESGNLVFLDV-GSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG 393 (447)
Q Consensus 315 ~~~~~~~~~~~~~D~~Gn~~l~~i-g~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~ 393 (447)
. ..+ .+.+++..++.++ +++|+..|||+|||+.|+++||++|++||.+||++
T Consensus 227 ~--------------------~~i~~~~~~~~~~~~~~-------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~ 279 (282)
T PF00365_consen 227 G--------------------QPISSEFIKELLEEGLG-------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEA 279 (282)
T ss_dssp S--------------------HBHHHHHHHHHHHHTTT-------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHH
T ss_pred c--------------------ccccccccccccccccc-------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 011 1233333333222 78999999999999999999999999999999999
Q ss_pred HHc
Q 042534 394 VMA 396 (447)
Q Consensus 394 ~~~ 396 (447)
+++
T Consensus 280 i~e 282 (282)
T PF00365_consen 280 ILE 282 (282)
T ss_dssp HHT
T ss_pred HhC
Confidence 874
No 24
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.9e-75 Score=636.69 Aligned_cols=324 Identities=23% Similarity=0.238 Sum_probs=286.5
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF- 158 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~- 158 (447)
.+||||+||||||||||++||++|+.+. .+| .+||||++||+||++++ +++|+|++|++|+++|||+|||+|+..
T Consensus 389 ~~~IaIltsGG~apGmNaairavv~~a~-~~g-~~v~gi~~G~~GL~~~~--~~~l~~~~v~~~~~~GGt~LGT~R~~~~ 464 (762)
T cd00764 389 NLNIAIVNVGAPAAGMNAAVRSAVRYGL-AHG-HRPYAIYDGFEGLAKGQ--IVELGWIDVGGWTGRGGSELGTKRTLPK 464 (762)
T ss_pred ccEEEEEecCCCchhHHHHHHHHHHHHH-HCC-CEEEEEecCHHHhcCCC--cccCCHHHHHHHHhCCcccccccCCCcH
Confidence 3899999999999999999999999885 356 59999999999999998 999999999999999999999999864
Q ss_pred -cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHHHH
Q 042534 159 -DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 159 -~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~ 236 (447)
++++++++|++++||+||+||||||+++|++|+++..+.. ++|+||||||||||||++||+|||||||+++++++|++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~id~ 544 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDR 544 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999876554 78999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHh-----hCCcEEEEEecC
Q 042534 237 AHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK-----ENGHAVLVVAEG 311 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~-----~k~~~vIvvaEG 311 (447)
++++|.|+++||||||+|||+|||||++++||+| ||+|||||.+|+++.....++++.++++ .+.+.++++|||
T Consensus 545 i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~G-Ad~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~se~ 623 (762)
T cd00764 545 IKQSASGTKRRVFIVETMGGYCGYLATMTGLAVG-ADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNEN 623 (762)
T ss_pred HHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeeeecC
Confidence 9999999777999999999999999999999998 9999999999999965555555555553 255788999999
Q ss_pred CCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHH
Q 042534 312 AGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAI 391 (447)
Q Consensus 312 a~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV 391 (447)
+... .++..++++++. .+.+|...|||+|||+.||++||++|++||.+||
T Consensus 624 ~~~~---------------------~~~~~~~~~~~~---------~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av 673 (762)
T cd00764 624 YTTV---------------------FTYELYSEEGKG---------VFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAM 673 (762)
T ss_pred Cccc---------------------cHHHHHHHHHhc---------CCceEecccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 7421 133345555543 1788899999999999999999999999999999
Q ss_pred HHHHcCC---------------CceEEEEeCCEEEEecHHHHHhhc-CCCCCChHHHHHHHHh
Q 042534 392 HGVMAGY---------------TGFVSGPINGNYAYIPLEDVAQAT-NAVNTKDHKWAWVRTV 438 (447)
Q Consensus 392 ~~~~~G~---------------tg~~vg~~~~~~~~vPl~~v~~~~-k~v~~~~~~w~~~~~~ 438 (447)
+++++.. +.+++|+++.++.+.|+.++.... +.--|+..||..+++.
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 674 KWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred HHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 9999852 889999999999999999998754 2334889999998876
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-73 Score=640.19 Aligned_cols=339 Identities=25% Similarity=0.355 Sum_probs=293.7
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCc-cccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT-VLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt-~LGssR~~ 157 (447)
..+||||++|||||||||+||+++++++.......+||||++||+||++++ +++|+++.|++|+++||| +|||+|.+
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~--~veLt~~~V~~~~n~GGs~iLGSgR~k 253 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKN--YVTITDSLMNRFRNLGGFNMLWSGRGK 253 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCC--eEECCHHHHhhHHhCCChhHhhCCCCC
Confidence 347999999999999999999999999865444569999999999999999 999999999999999998 89999987
Q ss_pred c----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc--CcCcccChhhHHHHHH
Q 042534 158 F----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG--IIDRSFGFQTAVEMAQ 231 (447)
Q Consensus 158 ~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~--~tD~s~GFdTAv~~~~ 231 (447)
. ++++++++|++++||+||+||||||+++|++|++++.+.+++++|||||||||||++ +||+|||||||+++++
T Consensus 254 ~~~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~ia 333 (1419)
T PTZ00287 254 VRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYS 333 (1419)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHH
Confidence 4 689999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCC----Ccchh-hhHHHHHHHHHh-hCCcEE
Q 042534 232 QAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEF----YLEGK-GGLVEFLDNRLK-ENGHAV 305 (447)
Q Consensus 232 ~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f----~le~~-~~l~~~i~~r~~-~k~~~v 305 (447)
++|++++.++.|++++++|||+|||+|||||++||||++ ||+|||||++| +++.. +.+++.+.+|.+ +++|+|
T Consensus 334 e~I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtg-AdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gV 412 (1419)
T PTZ00287 334 EVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTR-PNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGV 412 (1419)
T ss_pred HHHHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcC-CCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 999999999988888999999999999999999999998 99999999854 55521 123444555554 589999
Q ss_pred EEEecCCCCCCchhhhh------------------------------------hhhcccccCCccccchH--HHHHHHHH
Q 042534 306 LVVAEGAGQNMIPRTAA------------------------------------QTEERDESGNLVFLDVG--SWLKTELK 347 (447)
Q Consensus 306 IvvaEGa~~~~~~~~~~------------------------------------~~~~~D~~Gn~~l~~ig--~~L~~~i~ 347 (447)
||||||+.. ++|+... ...++|++||+++++++ +.|.++++
T Consensus 413 IvVsEGlie-~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~ 491 (1419)
T PTZ00287 413 ILIPEGLIE-FVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVE 491 (1419)
T ss_pred EEEeCCcch-hcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHH
Confidence 999999975 1222111 01258999999998764 46777776
Q ss_pred HHhcccCC-CceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeC-------CEEEEecHHHHH
Q 042534 348 KWWARDHP-GELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVA 419 (447)
Q Consensus 348 ~~~~~~~~-~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~ 419 (447)
+++.+... +..++++.+.+||+|||+.||.||+.||+.||+.|++++.+|+||+|+++.| |++..+||..++
T Consensus 492 ~~L~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m 571 (1419)
T PTZ00287 492 SELAKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIM 571 (1419)
T ss_pred HHHHHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHh
Confidence 66654311 2348899999999999999999999999999999999999999999999975 788999999999
Q ss_pred hh
Q 042534 420 QA 421 (447)
Q Consensus 420 ~~ 421 (447)
+.
T Consensus 572 ~~ 573 (1419)
T PTZ00287 572 HV 573 (1419)
T ss_pred hH
Confidence 84
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=7.8e-69 Score=603.19 Aligned_cols=336 Identities=18% Similarity=0.217 Sum_probs=287.9
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccc-cccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVL-ETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~L-GssR~~ 157 (447)
..+|||||||||||||||+|||++++++...+++ ++|+ .||.||++++ +++||.+.|++|+++|||+| ||||..
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~--~~gf-~G~~GLl~~~--~i~Lt~~~V~~i~n~GGtiLlgssR~~ 909 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGV--CIAF-YGLYGLLNNK--YIIIDDDNIAKHVNQGGLELTGNSPEH 909 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCe--EEEE-eCchhhcCCC--eEECCHHHHhhHHHcCCeeecCCcCCC
Confidence 4589999999999999999999999999665564 4665 5999999999 99999999999999999988 999964
Q ss_pred -c----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC--cCcccChhhHHHHH
Q 042534 158 -F----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI--IDRSFGFQTAVEMA 230 (447)
Q Consensus 158 -~----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~--tD~s~GFdTAv~~~ 230 (447)
+ .+++++++|++++||+||+||||||+++|+.|+|+++++|++++||||||||||||.+ ||+|||||||++++
T Consensus 910 ~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~ 989 (1419)
T PTZ00287 910 SLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVY 989 (1419)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHH
Confidence 2 4899999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCC----cch-hhhHHHHHHHHHh-hCCcE
Q 042534 231 QQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFY----LEG-KGGLVEFLDNRLK-ENGHA 304 (447)
Q Consensus 231 ~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~----le~-~~~l~~~i~~r~~-~k~~~ 304 (447)
+++|+++++||.|++++|+|||||||+|||||++||||+| ||+|||||.+++ |+. .+.+++.|++|.+ +|+|+
T Consensus 990 seaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatg-AniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~yg 1068 (1419)
T PTZ00287 990 ASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTH-PNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYG 1068 (1419)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcC-CCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcE
Confidence 9999999999999877899999999999999999999998 999999999887 111 1256777777776 58999
Q ss_pred EEEEecCCCCCC-------------chh-----------h----------h------------------h----------
Q 042534 305 VLVVAEGAGQNM-------------IPR-----------T----------A------------------A---------- 322 (447)
Q Consensus 305 vIvvaEGa~~~~-------------~~~-----------~----------~------------------~---------- 322 (447)
|||||||+...+ +.+ . . +
T Consensus 1069 IVlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s 1148 (1419)
T PTZ00287 1069 TVLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWS 1148 (1419)
T ss_pred EEEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHH
Confidence 999999974311 100 0 0 0
Q ss_pred -------------hhhcccccCCccccch--HHHHHHHHHHHhcccCCC----ceeEEeEeCCCccccCCCCCHhhHHHH
Q 042534 323 -------------QTEERDESGNLVFLDV--GSWLKTELKKWWARDHPG----ELFTVKYIDPTYMIRAVPANATDNLYC 383 (447)
Q Consensus 323 -------------~~~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~~----~~~~~k~i~~gy~~Rg~~p~~~Dr~~a 383 (447)
+..++|. ||++++.| .+.|.++++++++++++. ..+.....-.||..||+.||-||+.||
T Consensus 1149 ~~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~ 1227 (1419)
T PTZ00287 1149 LALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLA 1227 (1419)
T ss_pred HHHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHH
Confidence 0114687 99998764 556777777766654321 136666677899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEeC-------CEEEEecHHHHHhh
Q 042534 384 TLLAHSAIHGVMAGYTGFVSGPIN-------GNYAYIPLEDVAQA 421 (447)
Q Consensus 384 ~~lG~~AV~~~~~G~tg~~vg~~~-------~~~~~vPl~~v~~~ 421 (447)
+.||+.|..++.+|.||+|.+++| |+...+||..+++.
T Consensus 1228 Y~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~v 1272 (1419)
T PTZ00287 1228 YSYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKI 1272 (1419)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhch
Confidence 999999999999999999999975 99999999998873
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.6e-60 Score=531.21 Aligned_cols=338 Identities=17% Similarity=0.182 Sum_probs=282.6
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECC----hhhhhchhccCCcccccc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLN----PKMVRGWHKLGGTVLETS 154 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~----~~~v~~i~~~GGt~LGss 154 (447)
..+++|||+.||++||+|+||++++.++. +.| |+||.+||.||++++...+.|| .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~-~~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~ 749 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLP-SLK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNG 749 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHH-hCC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecc
Confidence 34889999999999999999999999986 333 9999999999999986678888 689999999999999998
Q ss_pred ----------CCcc------------------------cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC--
Q 042534 155 ----------RGGF------------------------DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-- 198 (447)
Q Consensus 155 ----------R~~~------------------------~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-- 198 (447)
|..+ +.+.+.++|++++||+||+||||||+++|+.|+|++.+++
T Consensus 750 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~ 829 (1328)
T PTZ00468 750 VEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLN 829 (1328)
T ss_pred ccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccc
Confidence 5321 3488999999999999999999999999999999988765
Q ss_pred ---CcceEeeecccccccccC--cCcccChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCcc
Q 042534 199 ---INVGVVGIPKTVDNDVGI--IDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVD 273 (447)
Q Consensus 199 ---~~i~VVgIPkTIDNDi~~--tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad 273 (447)
.+|+|||||||||||+++ +|+|||||||+++++++|.++..||.|+|+||||||+|||+|||||+++|||+| ||
T Consensus 830 ~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLatg-an 908 (1328)
T PTZ00468 830 GMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTH-PN 908 (1328)
T ss_pred cccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhhC-CC
Confidence 579999999999999987 999999999999999999777777777799999999999999999999999998 99
Q ss_pred EEecCCCC--------------CCcch-hhhHHHHHHHHHh-hCCcEEEEEecCCCCCCch----------h----h---
Q 042534 274 CCLIPEME--------------FYLEG-KGGLVEFLDNRLK-ENGHAVLVVAEGAGQNMIP----------R----T--- 320 (447)
Q Consensus 274 ~ilIPE~~--------------f~le~-~~~l~~~i~~r~~-~k~~~vIvvaEGa~~~~~~----------~----~--- 320 (447)
+|||||.+ ++++. .+.+++.|.+|.+ +|+|+|||||||+...+ | + .
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~i-p~~~e~~~li~e~~a~~~~~ 987 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQV-YPTREYRKIFSRFSTQNLCN 987 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhC-CCHHHHHHHHHHHhhhcccc
Confidence 99999997 45432 1245566777765 58899999999986433 2 1 0
Q ss_pred --------------------------------hhhhhcccccCCccccch--HHHHHHHHHHHhcccCCC----ceeEEe
Q 042534 321 --------------------------------AAQTEERDESGNLVFLDV--GSWLKTELKKWWARDHPG----ELFTVK 362 (447)
Q Consensus 321 --------------------------------~~~~~~~D~~Gn~~l~~i--g~~L~~~i~~~~~~~~~~----~~~~~k 362 (447)
.......|..||++++.| ...|.+++++++.++++. ..+...
T Consensus 988 ~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~ 1067 (1328)
T PTZ00468 988 ASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPV 1067 (1328)
T ss_pred ccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCcccccccee
Confidence 000001334499988765 456777777666554321 136666
Q ss_pred EeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCC-CceEEEEeC-------CEEEEecHHHHHhhc
Q 042534 363 YIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGY-TGFVSGPIN-------GNYAYIPLEDVAQAT 422 (447)
Q Consensus 363 ~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~-tg~~vg~~~-------~~~~~vPl~~v~~~~ 422 (447)
+...||..||+.||-||+.||+.||+.|..++.+|. ||+|.++.| |+...+||..+++.+
T Consensus 1068 ~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~~ 1135 (1328)
T PTZ00468 1068 CFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLN 1135 (1328)
T ss_pred eccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCcc
Confidence 677899999999999999999999999999999999 699999975 999999999998743
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-56 Score=475.17 Aligned_cols=427 Identities=37% Similarity=0.493 Sum_probs=384.5
Q ss_pred CCCCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccC
Q 042534 10 ENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCG 89 (447)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsG 89 (447)
++.+....|++++..++...+.|+...+.|...+..-... ++....++.+++||+++||.++.+|+||||||
T Consensus 58 ~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~--------ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g 129 (666)
T KOG2440|consen 58 LSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVI--------GGDGSLTGARAFPREWIYLEEELVKAGIVTCG 129 (666)
T ss_pred ccCCCcccccccccccccccceeccchhHHHhhcCeeEec--------CCccchhHhhhCchhccccchHHhhcceeecc
Confidence 6677778888889999999999999999887655432111 12455778999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHH-HhcCCeEEEEEccc----------------ccccccCCCCe--EECChhhhhchhccCCcc
Q 042534 90 GLCPGLNTVIRELVVGLW-ELYGVRQILGIQAG----------------YRGFYSTTRNP--LVLNPKMVRGWHKLGGTV 150 (447)
Q Consensus 90 G~~PGlN~vIr~vv~~~~-~~~~~~~V~Gi~~G----------------~~GL~~~~~~~--~~L~~~~v~~i~~~GGt~ 150 (447)
|+|||+|.+|+++|-.+. ..||...++|+.-+ ++||+.+. + +-+....|.+|+..++++
T Consensus 130 ~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~ev--mgr~cg~lalv~~ia~~aD~i 207 (666)
T KOG2440|consen 130 GLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEV--MGRHCGYLALVAAIAGGADTI 207 (666)
T ss_pred cccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeee--hhhccchHHHHHHhhcCCCEE
Confidence 999999999999999886 67898999998766 99999887 6 567788999999999999
Q ss_pred ccccCCccc---HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--h
Q 042534 151 LETSRGGFD---LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--T 225 (447)
Q Consensus 151 LGssR~~~~---~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--T 225 (447)
++++|...+ +.++++..+++++|.+|||||+++.++|..++|+++++.++..|+++||||||||.-.+.+++|| |
T Consensus 208 ~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~afDr~t 287 (666)
T KOG2440|consen 208 FIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSAFDRIT 287 (666)
T ss_pred EecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCcccccchHH
Confidence 999998877 88999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCC-------------------------
Q 042534 226 AVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEM------------------------- 280 (447)
Q Consensus 226 Av~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~------------------------- 280 (447)
|++.+++||.+++.+|.|+-+++.+|++|||.|+|+|++++||+++.|+|++||.
T Consensus 288 a~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~ 367 (666)
T KOG2440|consen 288 ACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQD 367 (666)
T ss_pred HHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc--hhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhh-hhcccccCCccccchHHHHHHHHHHHhcccCCCc
Q 042534 281 EFYLE--GKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQ-TEERDESGNLVFLDVGSWLKTELKKWWARDHPGE 357 (447)
Q Consensus 281 ~f~le--~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~-~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~ 357 (447)
||..+ +.-..+.....+++...|++++++|++++.++...... ...+|+++|..+.|++.|+.+..++++.++.+..
T Consensus 368 p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~~~~e 447 (666)
T KOG2440|consen 368 PFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTKRETPE 447 (666)
T ss_pred CCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheecccCcc
Confidence 77776 43445667888898899999999999999877665543 2346999999999999999999999988764323
Q ss_pred eeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHHH
Q 042534 358 LFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRT 437 (447)
Q Consensus 358 ~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~ 437 (447)
..++++|+|.|++|..+.+..|-.||..+++.++|.++++++++.+++++....+.|.-..+.....+|+.+.+|.++.+
T Consensus 448 ~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~~~~d 527 (666)
T KOG2440|consen 448 KMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWARVCD 527 (666)
T ss_pred cccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC
Q 042534 438 VTNQPDFVK 446 (447)
Q Consensus 438 ~t~qp~~~~ 446 (447)
.|.||.|..
T Consensus 528 ~t~Q~a~~T 536 (666)
T KOG2440|consen 528 STKQSAFGT 536 (666)
T ss_pred hccCCcccc
Confidence 999999965
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=360.03 Aligned_cols=301 Identities=24% Similarity=0.281 Sum_probs=251.5
Q ss_pred EEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-c----c
Q 042534 85 IVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F----D 159 (447)
Q Consensus 85 IvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~----~ 159 (447)
|+|||||+||||+++|++++... +...++|+|+.||+|++++...+.+++|+.|+.|...||+++||.|++ | .
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i--~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~g 78 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGI--YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREG 78 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhcc--ccCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccc
Confidence 68999999999999999999874 556799999999999999665588999999999999999999999986 3 2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHH-----------------HcCCcceEeeecccccccccCcCcccC
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ-----------------RRKINVGVVGIPKTVDNDVGIIDRSFG 222 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~-----------------~~~~~i~VVgIPkTIDNDi~~tD~s~G 222 (447)
..+...++-+.+|+.|+++|||||+++|+.+-+|.. ..+....++||+.|||||+.++|.++|
T Consensus 79 r~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG 158 (666)
T KOG2440|consen 79 RLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIG 158 (666)
T ss_pred eeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeec
Confidence 577888999999999999999999999998654421 136778999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCC
Q 042534 223 FQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG 302 (447)
Q Consensus 223 FdTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~ 302 (447)
-|||+.. ++||.+..||.| |.|-|++|+|||+|||+|+.+++|++ +|+|++||.|-.- ++.+++.+. ..+.++
T Consensus 159 ~dsal~r--e~id~~~~ta~s-h~RgFv~evmgr~cg~lalv~~ia~~-aD~i~~pe~~~~~--~~q~~~~l~-~~r~~G 231 (666)
T KOG2440|consen 159 IDSALHR--EAIDAITSTAQS-HSRGFVAEVMGRHCGYLALVAAIAGG-ADTIFIPERPGED--PEQLCEILD-SIRKRG 231 (666)
T ss_pred cccchhh--hhhhhhhhhhcc-CcceEEeeehhhccchHHHHHHhhcC-CCEEEecCCCCCC--HHHHHHHHH-HHHhCC
Confidence 9999999 999999999999 78999999999999999999999998 9999999998754 223444443 334556
Q ss_pred cEEEEEecCCCCCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHH
Q 042534 303 HAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLY 382 (447)
Q Consensus 303 ~~vIvvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~ 382 (447)
..+|+|+||++.. .|++. +.+.+++++.+.+ .+.++...+||+||++.|++|||++
T Consensus 232 ln~viVigG~~~~--------------~ga~i---~ae~vk~~~~k~l-------v~g~p~TilGdvqrgg~p~afDr~t 287 (666)
T KOG2440|consen 232 LNIVIVIGGAIDN--------------TGAPI---IAEEVKERKLKVL-------VVGVPKTILGDVQRGGVPSAFDRIT 287 (666)
T ss_pred CCEEEEEecccCC--------------CCCcc---cHHHHHHhhhhee-------eecceeeecCccccCCcccccchHH
Confidence 8899999999632 23322 2333444433322 2566777789999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCEEEEecHHHHHhh
Q 042534 383 CTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQA 421 (447)
Q Consensus 383 a~~lG~~AV~~~~~G~tg~~vg~~~~~~~~vPl~~v~~~ 421 (447)
|.++|+.||.+++..... +...++++-+|+.+....
T Consensus 288 a~~~g~eAI~a~l~~a~s---~~~g~~~VRlmgr~~~~i 323 (666)
T KOG2440|consen 288 ACEMGQEAINAALEEAES---AENGNGIVRLMGRESVHI 323 (666)
T ss_pred HHHHHHHHHHHHHhhchh---hcccceeEEehhHHHHHH
Confidence 999999999999987666 667788999998876543
No 30
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.53 E-value=0.076 Score=54.37 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.4
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
-|+| .|...+++.+.++|+|.+++.|||||.+....-. +-+++|.|||.=.-|=
T Consensus 83 ~tTa--~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~ 136 (355)
T COG3199 83 RTTA--EDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNY 136 (355)
T ss_pred CccH--HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeecccccee
Confidence 3555 5788999999999999999999999988765332 4589999999765553
No 31
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=92.89 E-value=5 Score=39.72 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=103.0
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||||..-=.-|=--.+++++-+.+. .+|.. + +|.++....+.
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~-~~Gy~-l----------------------------------~l~~t~~~~~~ 45 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAR-EHGYQ-L----------------------------------LLCNTGDDEEK 45 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHH-HTTCE-E----------------------------------EEEEETTTHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-HcCCE-E----------------------------------EEecCCCchHH
Confidence 357787776677777778888888774 44531 1 23334444555
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHh
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~ 240 (447)
++.++.|.++++|++|+.+-......-..+.+ .+++||.+=.+.+++... .|+..| =.+.+.++.+.+..
T Consensus 46 e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~------~~iPvV~~~~~~~~~~~~--~~V~~D-~~~a~~~a~~~Li~- 115 (279)
T PF00532_consen 46 EEYIELLLQRRVDGIILASSENDDEELRRLIK------SGIPVVLIDRYIDNPEGV--PSVYID-NYEAGYEATEYLIK- 115 (279)
T ss_dssp HHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH------TTSEEEEESS-SCTTCTS--CEEEEE-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCEEEEecccCChHHHHHHHH------cCCCEEEEEeccCCcccC--CEEEEc-chHHHHHHHHHHHh-
Confidence 68999999999999999976666444444433 268899888888776111 122333 11222233333332
Q ss_pred hhhcCCc-EEEEEe-------cCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCc--EEEE
Q 042534 241 AESAVNG-IGLVKL-------MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGH--AVLV 307 (447)
Q Consensus 241 A~S~~~~-v~iVev-------MGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~--~vIv 307 (447)
.. |++ |.++-. .-|..||..+....-- ..+-.+|.+..++.+ .-.+.+++.++.+.- +|+.
T Consensus 116 -~G-h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~~p~idai~~ 186 (279)
T PF00532_consen 116 -KG-HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLESHPDIDAIFC 186 (279)
T ss_dssp -TT-CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHTSTT-SEEEE
T ss_pred -cc-cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhhCCCCEEEEE
Confidence 23 677 777754 3466788765443311 245566666677766 234555555665544 6654
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.69 E-value=0.38 Score=48.51 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=38.8
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
+.|.+|+||||||+-.|.+... +.+++|+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999655544432 24788999842 479999874 556667777653
No 33
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.48 E-value=0.34 Score=48.29 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=43.6
Q ss_pred HHHHHHHHHcC-------CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH--HHH
Q 042534 161 HQIVDAIQTNA-------FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE--MAQ 231 (447)
Q Consensus 161 ~~iv~~l~~~~-------Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~--~~~ 231 (447)
+++.+.|++++ .|.+++||||||+-.|.+... ....+++++||.- -++||-|.++ ...
T Consensus 18 ~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~---~~~~~iPilGIN~----------G~lGFL~~~~~~~~~ 84 (265)
T PRK04885 18 SKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYE---NQLDKVRFVGVHT----------GHLGFYTDWRPFEVD 84 (265)
T ss_pred HHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhc---ccCCCCeEEEEeC----------CCceecccCCHHHHH
Confidence 44555555544 689999999999766654432 1114789999963 4699999743 455
Q ss_pred HHHHHHHH
Q 042534 232 QAISAAHV 239 (447)
Q Consensus 232 ~ai~~i~~ 239 (447)
++++++..
T Consensus 85 ~~l~~i~~ 92 (265)
T PRK04885 85 KLVIALAK 92 (265)
T ss_pred HHHHHHHc
Confidence 66666653
No 34
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.06 E-value=0.23 Score=49.42 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCC-----CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHH-
Q 042534 161 HQIVDAIQTNAF-----NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQ- 232 (447)
Q Consensus 161 ~~iv~~l~~~~I-----d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~- 232 (447)
+++.+.++.+++ |.+++||||||+-.|.+.+. +.+++|+||-. -++||-|.+ +.+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHHH
Confidence 445555555555 99999999999876665532 35789999852 369999854 34444
Q ss_pred HHHHH
Q 042534 233 AISAA 237 (447)
Q Consensus 233 ai~~i 237 (447)
.++.+
T Consensus 83 ~~~~l 87 (259)
T PRK00561 83 FANKL 87 (259)
T ss_pred HHHHH
Confidence 44444
No 35
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.98 E-value=0.25 Score=48.72 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=42.3
Q ss_pred HHHHHHHHcCC------CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH---HHHHHH
Q 042534 162 QIVDAIQTNAF------NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA---VEMAQQ 232 (447)
Q Consensus 162 ~iv~~l~~~~I------d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA---v~~~~~ 232 (447)
.+-+..+++++ |.+++||||||+-.|.+... +..++|+||-. -++||-|. .+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~ 74 (246)
T PRK04761 10 ALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLE 74 (246)
T ss_pred HHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHH
Confidence 33444566676 99999999999876655432 24689999865 26899874 355555
Q ss_pred HHHHHH
Q 042534 233 AISAAH 238 (447)
Q Consensus 233 ai~~i~ 238 (447)
++.++.
T Consensus 75 ~l~~~~ 80 (246)
T PRK04761 75 RIAAAE 80 (246)
T ss_pred HHHHhh
Confidence 565554
No 36
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.33 E-value=0.29 Score=49.84 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=41.3
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHHhh
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHVEA 241 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~~A 241 (447)
+.|.++++|||||+-.|..... ..+++|+||.. -++||-|.+ +.+.++++++...-
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcCC
Confidence 6899999999999877665533 24789999974 478998875 55566777765433
No 37
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=91.16 E-value=11 Score=35.17 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=74.1
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
|||+++.+-..|-.+..+.++-..+. .+|+ ++. +. .+........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~-~~g~-~l~---------------~~------------------~~~~~~~~~~ 45 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAK-AAGY-QVL---------------LA------------------NSQNDAEKQL 45 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHH-HcCC-eEE---------------EE------------------eCCCCHHHHH
Confidence 58999988778889999999988774 3443 111 00 0000112345
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhh
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEA 241 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A 241 (447)
+.++.+.+.++|++++.+.+.+... ..+.+.+ .++++|.+-.+.++. ....++++|.. +....+.+.+....
T Consensus 46 ~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~--~~ip~v~~~~~~~~~--~~~~~v~~d~~-~~~~~~~~~l~~~g 117 (264)
T cd01537 46 SALENLIARGVDGIIIAPSDLTAPT---IVKLARK--AGIPVVLVDRDIPDG--DRVPSVGSDNE-QAGYLAGEHLAEKG 117 (264)
T ss_pred HHHHHHHHcCCCEEEEecCCCcchh---HHHHhhh--cCCCEEEeccCCCCC--cccceEecCcH-HHHHHHHHHHHHhc
Confidence 6777778889999999988876544 1233333 357788877666541 12235555543 33334444444322
Q ss_pred hhcCCcEEEEEe
Q 042534 242 ESAVNGIGLVKL 253 (447)
Q Consensus 242 ~S~~~~v~iVev 253 (447)
++++.++--
T Consensus 118 ---~~~i~~i~~ 126 (264)
T cd01537 118 ---HRRIALLAG 126 (264)
T ss_pred ---CCcEEEEEC
Confidence 567888744
No 38
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.89 E-value=0.78 Score=45.76 Aligned_cols=55 Identities=29% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~ 238 (447)
+.|.+++||||||+-.|.+.... . .+++++||.- +-++||-|.+ +...++++++.
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAIT 95 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHH
Confidence 36899999999998766554321 1 1567888853 2589997763 45555665554
No 39
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=90.63 E-value=0.15 Score=51.15 Aligned_cols=61 Identities=23% Similarity=0.519 Sum_probs=42.5
Q ss_pred HHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHH
Q 042534 164 VDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 164 v~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
.+.+...+.|.+++||||||+..|.+... +.+++|+||+. -+.||-|.. +.+.+++..+..
T Consensus 69 ~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 69 LEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp CHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 34456789999999999999988876643 25799999984 356776553 445555555544
No 40
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.31 E-value=0.42 Score=48.33 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=40.9
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHHhh
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHVEA 241 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~~A 241 (447)
+.|.++++|||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++++...-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCC
Confidence 6899999999999766554432 24789999964 469999986 45666777765443
No 41
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.95 E-value=0.82 Score=45.27 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=36.3
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH--HHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE--MAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~--~~~~ai~~i~~ 239 (447)
+.|.+++||||||+-.|.+.. +++|+||- .-++||-|.++ ...++++++..
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin----------~G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFK----------AGRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEe----------CCCCccccccCHHHHHHHHHHHHc
Confidence 669999999999987665432 67899986 23699998754 34555655543
No 42
>PLN02929 NADH kinase
Probab=89.62 E-value=0.57 Score=47.56 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc---ccccccc-C----cCcccChhhHH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK---TVDNDVG-I----IDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk---TIDNDi~-~----tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
+.|.+|+||||||+-.|....+ .+++|+||-. +.|.--. . ...++||=|++ +...++++++..
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLD------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcC------CCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 5689999999999876655432 4689999843 2222110 0 12389999984 444555666553
No 43
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.32 E-value=0.56 Score=47.74 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=38.4
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~ 238 (447)
++|.+++||||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.+++.++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999876655432 25789999942 479999874 44555565554
No 44
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.22 E-value=0.46 Score=47.66 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=33.3
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
+.+.|.++++|||||+-.|..+.+ .+++|+|||. -+.||-|.++
T Consensus 55 ~~~~d~vi~iGGDGTlL~a~~~~~------~~~pi~gIn~----------G~lGFl~~~~ 98 (277)
T PRK03708 55 EMDVDFIIAIGGDGTILRIEHKTK------KDIPILGINM----------GTLGFLTEVE 98 (277)
T ss_pred ccCCCEEEEEeCcHHHHHHHHhcC------CCCeEEEEeC----------CCCCccccCC
Confidence 347899999999999886655432 3789999984 3568888755
No 45
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.03 E-value=0.58 Score=47.40 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=39.6
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
+.|.++++|||||+-.|..... ..+++|+||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHc
Confidence 6899999999999877665543 24788999963 369999974 455566666653
No 46
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.97 E-value=0.75 Score=46.51 Aligned_cols=53 Identities=30% Similarity=0.597 Sum_probs=37.2
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH--HHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE--MAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~--~~~~ai~~i~ 238 (447)
+.|.+++||||||+-.|..... +.+++|+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999876655432 24688999863 4689988855 3344555543
No 47
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=88.24 E-value=1.1 Score=47.31 Aligned_cols=136 Identities=23% Similarity=0.312 Sum_probs=76.2
Q ss_pred eeEEecCCccccccCCCCceEEEEccCCCCccHHH-HHHHHHHHHHHhcCCe-----------EEEEEcccccccccC-C
Q 042534 63 VAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNT-VIRELVVGLWELYGVR-----------QILGIQAGYRGFYST-T 129 (447)
Q Consensus 63 ~~~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~-vIr~vv~~~~~~~~~~-----------~V~Gi~~G~~GL~~~-~ 129 (447)
+.|.+.=|..-+- +-++.|||+||+||..|--|. -|.+-- + ..|+.. +..-++.||.--.-+ +
T Consensus 207 P~~d~V~p~p~~k-dL~~akIALvTsgGivPkgnPd~i~s~~--A-~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~D 282 (431)
T TIGR01917 207 PVFDNVAPGPAIK-DISKAKIAIVTSGGIVPKGNPDHIESSS--A-SKYGKYDIDGFDDLSEADHETAHGGHDPTYANED 282 (431)
T ss_pred CCCCCCCCcccCC-chhhCEEEEEecCCcccCCCCCcccccc--C-CCceEEeCCccCcCCccceEEeccccChHHHhcC
Confidence 3355543332222 456789999999999998876 232111 0 123211 222334555543321 1
Q ss_pred -CCeEECChhhhhchhccC--Cc----cc-----cccCCc--ccHHHHHHHHHHcCCCEEEEecCCCc-HHHHHHHHHHH
Q 042534 130 -RNPLVLNPKMVRGWHKLG--GT----VL-----ETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGT-MRGAVEIFDEI 194 (447)
Q Consensus 130 -~~~~~L~~~~v~~i~~~G--Gt----~L-----GssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~~~~ 194 (447)
..+++|+ .+..+...| |+ +. ||++.. ..-++|.+.|++-++|+++..-.-|| .+....+.+++
T Consensus 283 pn~v~PlD--~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~kei 360 (431)
T TIGR01917 283 ADRVIPVD--VLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEI 360 (431)
T ss_pred CCeeeeHH--HHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHH
Confidence 1133333 233333322 10 11 233322 24588999999999999999999888 55566788999
Q ss_pred HHcCCcceEeee
Q 042534 195 QRRKINVGVVGI 206 (447)
Q Consensus 195 ~~~~~~i~VVgI 206 (447)
++.|+ +||.|
T Consensus 361 E~~GI--PvV~i 370 (431)
T TIGR01917 361 ERAGI--PVVHI 370 (431)
T ss_pred HHcCC--CEEEE
Confidence 98764 45554
No 48
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=87.89 E-value=1.2 Score=47.19 Aligned_cols=134 Identities=22% Similarity=0.360 Sum_probs=75.1
Q ss_pred EEecCCccccccCCCCceEEEEccCCCCccHHH-HHHHHHHHHHHhcCCe-----------EEEEEcccccccccC-C-C
Q 042534 65 YHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNT-VIRELVVGLWELYGVR-----------QILGIQAGYRGFYST-T-R 130 (447)
Q Consensus 65 ~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~-vIr~vv~~~~~~~~~~-----------~V~Gi~~G~~GL~~~-~-~ 130 (447)
|.|-=|..-+- +-++.|||+||+||..|=-|. -|.+--. ..|+.. +..-++.||.--.-+ + .
T Consensus 209 fd~v~p~p~~k-dL~~akIALVTsgGivPkgnPd~i~ss~A---~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn 284 (431)
T TIGR01918 209 FDRVEPAAAIK-DLSKAKIAVVTSGGIVPKDNPDRIESSSA---SKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPD 284 (431)
T ss_pred CCcCCCCccCC-chhhCEEEEEecCCcccCCCCCcccccCC---CcceeEeCCCccccCccceEEeccccChHHHhcCCC
Confidence 55444333222 346789999999999998883 5432211 122221 122233455443321 1 1
Q ss_pred CeEECChhhhhchhccC--Cc----cc-----cccCCc--ccHHHHHHHHHHcCCCEEEEecCCCc-HHHHHHHHHHHHH
Q 042534 131 NPLVLNPKMVRGWHKLG--GT----VL-----ETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGT-MRGAVEIFDEIQR 196 (447)
Q Consensus 131 ~~~~L~~~~v~~i~~~G--Gt----~L-----GssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS-~~~A~~L~~~~~~ 196 (447)
.+++|+. +..+...| |. +. ||++.. ..-.+|++.|++-++|+++....-|| .+....+.+++++
T Consensus 285 ~v~PlD~--LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~ 362 (431)
T TIGR01918 285 RVVPVDV--LRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIER 362 (431)
T ss_pred eeeeHHH--HHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH
Confidence 1333332 22222222 10 11 222211 23589999999999999999999998 5556678899998
Q ss_pred cCCcceEeee
Q 042534 197 RKINVGVVGI 206 (447)
Q Consensus 197 ~~~~i~VVgI 206 (447)
.| |+||.|
T Consensus 363 ~G--iPvv~~ 370 (431)
T TIGR01918 363 AG--IPVVHM 370 (431)
T ss_pred cC--CCEEEE
Confidence 76 445554
No 49
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.35 E-value=1.1 Score=45.44 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=67.3
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
|+.++|+|+.-- ..|....+++.+.+.+. .+++ +++-... . .+.. ++... ..
T Consensus 2 ~~~~~v~iv~~~-~k~~a~e~~~~i~~~L~-~~gi-ev~v~~~--------~-------~~~~------~~~~~--~~-- 53 (295)
T PRK01231 2 PSFRNIGLIGRL-GSSSVVETLRRLKDFLL-DRGL-EVILDEE--------T-------AEVL------PGHGL--QT-- 53 (295)
T ss_pred CCCCEEEEEecC-CCHHHHHHHHHHHHHHH-HCCC-EEEEecc--------h-------hhhc------Ccccc--cc--
Confidence 566789998643 24777788888887664 4554 4432110 0 0000 00000 00
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAIS 235 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~ 235 (447)
.+. ..+ ..+.|.++++|||||+-.|..... +.+++|+||.. -++||-|++ +...++++
T Consensus 54 ~~~----~~~-~~~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~ 113 (295)
T PRK01231 54 VSR----KLL-GEVCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLA 113 (295)
T ss_pred cch----hhc-ccCCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHH
Confidence 011 111 236899999999999877654432 35789999975 369999874 45666777
Q ss_pred HHHH
Q 042534 236 AAHV 239 (447)
Q Consensus 236 ~i~~ 239 (447)
.+..
T Consensus 114 ~~~~ 117 (295)
T PRK01231 114 EVLD 117 (295)
T ss_pred HHHc
Confidence 7654
No 50
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=86.32 E-value=1 Score=48.70 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=39.1
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
++|.+|+||||||+-.|..+.. +..++|+||. --++||-|.+ +.+.++++++..
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHc
Confidence 6899999999999877766543 2468899983 2579999875 445556666543
No 51
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.45 E-value=0.89 Score=45.54 Aligned_cols=53 Identities=28% Similarity=0.570 Sum_probs=36.6
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH--HHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE--MAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~--~~~~ai~~i~ 238 (447)
+.|.+++||||||+-.|.+... ..+++|+||-. -++||-|.++ .+.+.+.++-
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~~ 96 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEACL 96 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999876655432 24789999842 4699988653 3344444433
No 52
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.77 E-value=1.2 Score=45.28 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHH---HHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMA---QQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~---~~ai~~i~~ 239 (447)
+.|.++++|||||+-.+..... +.+++++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999876654432 34788999865 3479999976422 456666553
No 53
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=83.42 E-value=2 Score=43.46 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=38.9
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA--VEMAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA--v~~~~~ai~~i~ 238 (447)
+.|.++++|||||+-.|..... +.+++++||- --++||-|. .+...++++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 6899999999999887765432 2478899986 246899986 345566666664
No 54
>PRK11914 diacylglycerol kinase; Reviewed
Probab=82.80 E-value=2.3 Score=42.75 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh-HHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT-AVEMAQQAI 234 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT-Av~~~~~ai 234 (447)
+..++++.+.+.+.|.++++|||||...+.. .+. +.++++--||.==-||+. +++|..+ -.+.+.+++
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 5666777677788999999999999886542 222 235678889988889998 6788765 355555554
No 55
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.77 E-value=2.1 Score=42.83 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=36.5
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHHh
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHVE 240 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~~ 240 (447)
+.|.+++||||||+-.|.+. +..+|+||-. -++||-|.+ +...++++++...
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcC
Confidence 78999999999998655443 2358898843 468998864 4455566666543
No 56
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=82.27 E-value=14 Score=34.33 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=67.3
Q ss_pred CceEEEEccCCCCccHHHH----HHHHHHHHHHhcC---CeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccc
Q 042534 80 NTRAAIVTCGGLCPGLNTV----IRELVVGLWELYG---VRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLE 152 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~v----Ir~vv~~~~~~~~---~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LG 152 (447)
.+|+||+.-|=-.+- .. +..+...+ ..+| +.++||-..-+.+|.+ +...-|.-.-
T Consensus 22 ~~riAvfID~~Nv~~--~~~~~d~~~i~~~l-s~~G~i~~~R~Y~~a~a~~~l~~---------------~l~~~Gf~pv 83 (160)
T TIGR00288 22 EKKIGLLVDGPNMLR--KEFNIDLDEIREIL-SEYGDIKIGKVLLNQYASDKLIE---------------AVVNQGFEPI 83 (160)
T ss_pred CCcEEEEEeCCccCh--hhhccCHHHHHHHH-HhcCCeEEEEEEechhccHHHHH---------------HHHHCCceEE
Confidence 577888885544441 11 34444444 4566 4577776555444422 1111121110
Q ss_pred ccCCcccHHHHHHHHHH---cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 153 TSRGGFDLHQIVDAIQT---NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 153 ssR~~~~~~~iv~~l~~---~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
...+..|+.-++|.++- .++|.++++-||+=+.- |.+.++++|..+-++|.|+.
T Consensus 84 ~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 84 IVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred EecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 12335688888888776 69999999999999875 55666778988888888754
No 57
>PRK13054 lipid kinase; Reviewed
Probab=82.17 E-value=3.7 Score=41.21 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISA 236 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~ 236 (447)
-+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++--||.==-||+. +++|-..-.+.+.++|.+
T Consensus 43 ~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~~i~~ 117 (300)
T PRK13054 43 GDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALKLAIE 117 (300)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHHHHHh
Confidence 3456666666677899999999999988763 44321 01335678889988889987 345554434444443321
Q ss_pred HHHhhhhcCCcEEEEEecCC
Q 042534 237 AHVEAESAVNGIGLVKLMGR 256 (447)
Q Consensus 237 i~~~A~S~~~~v~iVevMGR 256 (447)
. ..+.+-+.++=+|
T Consensus 118 ----g--~~~~iDlg~v~~~ 131 (300)
T PRK13054 118 ----G--RAQPIDLARVNDR 131 (300)
T ss_pred ----C--CceEEEEEEEcCc
Confidence 1 1234555555554
No 58
>PRK13337 putative lipid kinase; Reviewed
Probab=81.91 E-value=3.8 Score=41.22 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHH-HHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVE-IFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~-L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~a 233 (447)
-+.+++++.+.+.+.|.|+++|||||...+.. |.+ .+..+++--||.===||.. +++|...-.+.+.++
T Consensus 44 ~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~ 113 (304)
T PRK13337 44 GDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADV 113 (304)
T ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHH
Confidence 45666777677778999999999999887653 432 3335667778988888886 445554434444443
No 59
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.40 E-value=50 Score=31.38 Aligned_cols=127 Identities=6% Similarity=0.001 Sum_probs=70.0
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~ 160 (447)
+||++...=..|-.+.+++++-+.+. .+|. ||. ++ +..+... ...
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~-~~~~--------~~~--------~~-----------------~~~~~~~~~~~ 46 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAK-KLNP--------GVK--------VT-----------------VVSADYDLNKQ 46 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHH-HhCC--------CeE--------EE-----------------EccCCCCHHHH
Confidence 47888877778889999999988875 3121 111 10 1112212 224
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHh
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~ 240 (447)
.++++.+...++|++++.+.+... .....+++.++ +++||.+-.. ....+.++++|.. .....+.+.+...
T Consensus 47 ~~~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~--~ipvv~~~~~----~~~~~~~V~~d~~-~~g~~~~~~l~~~ 117 (271)
T cd06321 47 VSQIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAA--GIVVVAVDVA----AEGADATVTTDNV-QAGEISCQYLADR 117 (271)
T ss_pred HHHHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHC--CCeEEEecCC----CCCccceeeechH-HHHHHHHHHHHHH
Confidence 567788889999999998765431 12222444444 4667766332 2223356666642 2333333333332
Q ss_pred hhhcCCcEEEEE
Q 042534 241 AESAVNGIGLVK 252 (447)
Q Consensus 241 A~S~~~~v~iVe 252 (447)
+.. +.++.++-
T Consensus 118 ~~g-~~~i~~i~ 128 (271)
T cd06321 118 LGG-KGNVAILN 128 (271)
T ss_pred hCC-CceEEEEe
Confidence 223 56788774
No 60
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.88 E-value=2.7 Score=46.44 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=37.9
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAH 238 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~ 238 (447)
++|.+|+||||||+-.|..... ..+++|+||-. -++||-|.+ +.+.+++.++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHH
Confidence 3689999999999876655432 24788999854 579999975 45555665554
No 61
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=79.37 E-value=59 Score=30.96 Aligned_cols=92 Identities=7% Similarity=-0.014 Sum_probs=53.0
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
|||++...=.-|-...++.++-+.+. .+|+ ++.-.. ..+.+......
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~~-------------------------------~~~~~~~~~~~ 47 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAK-KLGV-SVDIQA-------------------------------APSEGDQQGQL 47 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHH-HhCC-eEEEEc-------------------------------cCCCCCHHHHH
Confidence 57888866667788888888887774 3443 111000 00111112245
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
++++.|...++|++++.+.+.+... ...+++.++ +++||.+-..+
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~~~~~ 92 (275)
T cd06320 48 SIAENMINKGYKGLLFSPISDVNLV--PAVERAKKK--GIPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHhCCCEEEECCCChHHhH--HHHHHHHHC--CCeEEEECCCC
Confidence 6788888999999988766543211 122444443 56788664443
No 62
>PRK13055 putative lipid kinase; Reviewed
Probab=78.34 E-value=4.7 Score=41.25 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeeecccccccccCcCcccChhh-HHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT-AVEMAQQAI 234 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT-Av~~~~~ai 234 (447)
+.+++++.+.+.+.|.|+++|||||+..+. .|.. .+..+++--||.==-||+. +++|..+ -...+.+.+
T Consensus 47 ~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA---r~Lgi~~~~~~~a~~~l 117 (334)
T PRK13055 47 SAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA---RALKIPRDNPVEAAKVI 117 (334)
T ss_pred cHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH---HHcCCCCcCHHHHHHHH
Confidence 456666666677899999999999988654 3432 2334566778988888887 4566554 233444433
No 63
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=78.21 E-value=3.7 Score=41.17 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=35.0
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
...+.++++|||||+-.|.+.... ..++|+||= --++||-|-.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-----~~~pilgin----------~G~lGFLt~~~ 97 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-----LDIPVLGIN----------LGHLGFLTDFE 97 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-----CCCCEEEEe----------CCCcccccccC
Confidence 688999999999999888776542 458899983 24899988876
No 64
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=77.57 E-value=79 Score=31.42 Aligned_cols=69 Identities=4% Similarity=0.078 Sum_probs=45.9
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-..|=...+++++-+.+. .+|+. ++-+. +.......
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~~~---------------------------------~~~~~~~~ 104 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCY-QKGYT-LILCN---------------------------------AWNNLEKQ 104 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHH-HCCCE-EEEEe---------------------------------CCCCHHHH
Confidence 468999877777888888898888774 45542 22100 01111224
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTM 184 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~ 184 (447)
.+.++.+.+.++|++++.+.+.+.
T Consensus 105 ~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 105 RAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCH
Confidence 567778889999999999876543
No 65
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=77.20 E-value=14 Score=37.64 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=91.2
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC-cccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG-GFDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~-~~~~ 160 (447)
-||++..--.-|=....++++-..+. .+|.. .+|.++.. ....
T Consensus 60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~-~~gy~-----------------------------------~~l~~~~~~~~~e 103 (333)
T COG1609 60 TIGLVVPDITNPFFAEILKGIEEAAR-EAGYS-----------------------------------LLLANTDDDPEKE 103 (333)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHH-HcCCE-----------------------------------EEEECCCCCHHHH
Confidence 46776654444666677777776663 33431 13444444 2456
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccc-cccc--CcCcccChhhHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVD-NDVG--IIDRSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTID-NDi~--~tD~s~GFdTAv~~~~~ai~~i 237 (447)
+++++.|...++|++|+.|-...-. +.+.+.+. ++++|-|=.+.+ .+++ .+|.--|...|++...+
T Consensus 104 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~--~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~----- 172 (333)
T COG1609 104 REYLETLLQKRVDGLILLGERPNDS----LLELLAAA--GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE----- 172 (333)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHH----HHHHHHhc--CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH-----
Confidence 8899999999999999999332222 22333344 455665544433 3332 33433333333333322
Q ss_pred HHhhhhcCCcEEEEEe-------cCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhC---CcEEEE
Q 042534 238 HVEAESAVNGIGLVKL-------MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN---GHAVLV 307 (447)
Q Consensus 238 ~~~A~S~~~~v~iVev-------MGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k---~~~vIv 307 (447)
.. |+++.++-- .-|..||+.+.....-. .+-.++.+.+|+.+ .-.+.+.+-+... --+|++
T Consensus 173 ----~G-~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~-~~~~~i~~~~~~~~---~g~~~~~~ll~~~~~~ptAif~ 243 (333)
T COG1609 173 ----LG-HRRIAFIGGPLDSSASRERLEGYRAALREAGLP-INPEWIVEGDFSEE---SGYEAAERLLARGEPRPTAIFC 243 (333)
T ss_pred ----CC-CceEEEEeCCCccccHhHHHHHHHHHHHHCCCC-CCcceEEecCCChH---HHHHHHHHHHhcCCCCCcEEEE
Confidence 23 667777643 33456777655443321 11356666667555 3445555555432 346665
Q ss_pred Ee
Q 042534 308 VA 309 (447)
Q Consensus 308 va 309 (447)
.+
T Consensus 244 ~n 245 (333)
T COG1609 244 AN 245 (333)
T ss_pred cC
Confidence 53
No 66
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=76.75 E-value=5.2 Score=40.83 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH--cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR--RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~--~~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--++..|..++-.... ..-.+++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 46789999999999999999999999999877544322 12347899999883
No 67
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=76.53 E-value=3.2 Score=42.82 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC--------------CcceEeeecccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK--------------INVGVVGIPKTVDN 212 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~--------------~~i~VVgIPkTIDN 212 (447)
+++++++.+++.++|.+|-|||--++..|..++-.....+ -.+++|.||-|--+
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 66 DVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 5789999999999999999999999999998876654221 12789999988554
No 68
>PLN02727 NAD kinase
Probab=75.33 E-value=2.4 Score=48.88 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=40.3
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH--HHHHHHHHHHHH
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV--EMAQQAISAAHV 239 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv--~~~~~ai~~i~~ 239 (447)
++|.+|+||||||+-.|..+.. +..++|+||-. -++||-|-+ +.+.++++++..
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~ 798 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIH 798 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHc
Confidence 6899999999999877766643 24688999853 379998865 455667776654
No 69
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=75.33 E-value=3.2 Score=42.67 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.++ |.++.|||--.+..|..++... .+ ++++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~r--gip~i~VPTT~ 121 (345)
T cd08195 70 TLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MR--GIDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hc--CCCeEEcchhH
Confidence 47889999999999 9999999998888887776432 23 57899999997
No 70
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.15 E-value=76 Score=30.01 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=39.5
Q ss_pred EEEEccCC-CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccH
Q 042534 83 AAIVTCGG-LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDL 160 (447)
Q Consensus 83 iaIvtsGG-~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~ 160 (447)
||+|..-- ..|-...++.++...+. .+|+ ++. +-+++.. ...
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~-~~g~-~~~----------------------------------~~~~~~~~~~~ 45 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAE-EDGV-EVI----------------------------------VLDANGDVARQ 45 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHH-hcCC-EEE----------------------------------EEcCCcCHHHH
Confidence 56666442 57788888888887774 3342 111 1112211 123
Q ss_pred HHHHHHHHHcCCCEEEEecCCCc
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
.+.++.+...++|++++.+.+.+
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~~~ 68 (275)
T cd06317 46 AAQVEDLIAQKVDGIILWPTDGQ 68 (275)
T ss_pred HHHHHHHHHcCCCEEEEecCCcc
Confidence 46677788889999999887643
No 71
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=75.13 E-value=7.9 Score=38.69 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=42.4
Q ss_pred ccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeeeccccccccc
Q 042534 153 TSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 153 ssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
+++...+.+++++.+.+.+.|.++++|||||+..+. .|.+. ..+...++.-||.==-||..
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 334344567777777778899999999999987764 34321 11234567889988889986
No 72
>PRK13059 putative lipid kinase; Reviewed
Probab=72.67 E-value=7.5 Score=38.96 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=42.1
Q ss_pred HHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 168 QTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 168 ~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
.+.+.|.++++|||||...+. +.+.+.+.++++--||.==-||.. +++|...-...+.+.+
T Consensus 53 ~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i 113 (295)
T PRK13059 53 IDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQI 113 (295)
T ss_pred hhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHHH
Confidence 356889999999999988653 222334456778889988889986 4566655455555544
No 73
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=72.62 E-value=4.9 Score=39.95 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEee-eccccccccc
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVG-IPKTVDNDVG 215 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVg-IPkTIDNDi~ 215 (447)
.++...+.+.|.++++|||||+..+. .|.+ .. +.+.+| ||.==-||+.
T Consensus 49 ~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 49 YVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34444456899999999999988754 3432 11 234566 8987788886
No 74
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.57 E-value=85 Score=29.42 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=48.2
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++...=.-|-...++.++...+. .+|+. +.-+ .+... .+..+
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~-~~g~~-~~~~---------------------------------~~~~~-~~~~~ 45 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQ-ARGYQ-PLLI---------------------------------NTDDD-EDLDA 45 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHH-HCCCe-EEEE---------------------------------cCCCC-HHHHH
Confidence 5666655556777778888877764 45542 2210 00111 13456
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.++.+.+.++|++++...+.+-.. .+.+.+. +++||.+
T Consensus 46 ~i~~~~~~~vdgiii~~~~~~~~~----~~~~~~~--~ipvV~~ 83 (266)
T cd06278 46 ALRQLLQYRVDGVIVTSGTLSSEL----AEECRRN--GIPVVLI 83 (266)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHH----HHHHhhc--CCCEEEE
Confidence 778888999999999887654321 2333343 4667766
No 75
>PRK00861 putative lipid kinase; Reviewed
Probab=72.40 E-value=7.5 Score=38.87 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
-+..++++...+.+.|.++++|||||+..+. .|. . .++++--||.===||.. +++|...-.+.+.+.+
T Consensus 44 ~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~----~--~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i 112 (300)
T PRK00861 44 IGADQLAQEAIERGAELIIASGGDGTLSAVAGALI----G--TDIPLGIIPRGTANAFA---AALGIPDTIEEACRTI 112 (300)
T ss_pred CCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHh----c--CCCcEEEEcCCchhHHH---HHcCCCCCHHHHHHHH
Confidence 4567777777778899999999999988764 332 2 24667778887788886 5677765455555544
No 76
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=72.13 E-value=4.8 Score=41.63 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
..+++++.+.+.+. |.++.|||--++..|..++-.+ .|| ++.+.||.|. +..+|.++|--|+++.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~-~rg--i~~i~iPTTl---la~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY-MRG--VSWSFVPTTL---LAQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH-HcC--CCeEEecccH---HHhhhccccccceecC
Confidence 47889999999999 8999999988888888776433 344 5799999984 1345677777777764
No 77
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=72.10 E-value=4.9 Score=41.49 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
..+++++.+++.++ |.++.|||--++..|..++-.. .+ ++++|.||-|. +..+|.++|--++
T Consensus 77 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~---~s~~ds~~~~k~~ 141 (358)
T PRK00002 77 TLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL---LAQVDSSVGGKTG 141 (358)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh---hhccccCcCCcee
Confidence 47888999999887 9999999998898888776422 23 57899999997 3344555554333
No 78
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=71.34 E-value=13 Score=38.51 Aligned_cols=208 Identities=16% Similarity=0.249 Sum_probs=118.3
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCC-CCeEECChhhhhchhccCCccccccCCc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTT-RNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~-~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
...||.|+=||| |.|+++..+.+.- ..++ +.+.+.-..++|-... ..-+.+-.+...++..-+---+|-.-..
T Consensus 10 ~~~~I~VIGvGg---~G~n~v~~m~~~~--~~gv-e~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAe 83 (338)
T COG0206 10 LKARIKVIGVGG---AGGNAVNRMIEEG--VEGV-EFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAE 83 (338)
T ss_pred cCceEEEEEeCC---cchHHHHHHHHhh--hCce-EEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHH
Confidence 357899999998 6777888787653 2444 8888888888886533 1112121111111110000011110011
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCC--cHHHH-HHHHHHHHHcC-CcceEeeecccccccccCcCcccChh--hHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDG--TMRGA-VEIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQ 231 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdg--S~~~A-~~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~ 231 (447)
.+.++|.+.|+ +.|++|++=|.| |=++| -.|++.+++.| +-++|+..|-+ |. .-.+.+.
T Consensus 84 e~~~~I~~~l~--g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~-------------~EG~~r~~~A~ 148 (338)
T COG0206 84 ESIEEIEEALK--GADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFS-------------FEGSPRMENAE 148 (338)
T ss_pred HHHHHHHHHhc--cCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecch-------------hcCchHHHHHH
Confidence 35788888887 677777765443 44444 56778777766 55666666643 43 4567788
Q ss_pred HHHHHHHHhhhhc--CCcEEEEEecCCccchHHHHHhhc---c---CCccEEecCCCCCCcchhhhHHHHHHHHHhhCCc
Q 042534 232 QAISAAHVEAESA--VNGIGLVKLMGRSTGHIALHATLS---S---RDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGH 303 (447)
Q Consensus 232 ~ai~~i~~~A~S~--~~~v~iVevMGR~sG~lAl~aaLA---~---~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~ 303 (447)
+.|..++..+.|. -..--++|......-|-|...+-. . +-.+++..|- -..+ -++.++.-++..|.
T Consensus 149 ~gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~i~e~I~~~g-linv-----DfaDv~~vm~~~G~ 222 (338)
T COG0206 149 EGIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKGITELITKPG-LVNV-----DFADVRTVMKGGGF 222 (338)
T ss_pred HHHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHhccCc-eEee-----cHHHHHHHHhcCCc
Confidence 8888888777662 112334566664444444433221 1 1245555551 1122 24567777778899
Q ss_pred EEEEEecCCC
Q 042534 304 AVLVVAEGAG 313 (447)
Q Consensus 304 ~vIvvaEGa~ 313 (447)
+.+=+.+..+
T Consensus 223 A~mG~g~~~~ 232 (338)
T COG0206 223 ALMGIGRASG 232 (338)
T ss_pred eeEEEeeccc
Confidence 9998888765
No 79
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=71.28 E-value=8.6 Score=39.33 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
.++++++.+++.+.|.+|.|||--.+..|..++.. .++++|.||-|.-+|-.
T Consensus 66 ~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~-----~~~p~i~iPTT~~t~s~ 117 (339)
T cd08173 66 EVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK-----LGIPFISVPTAASHDGI 117 (339)
T ss_pred HHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh-----cCCCEEEecCcccCCcc
Confidence 47889999999999999999998888888888732 35789999999766543
No 80
>PRK13057 putative lipid kinase; Reviewed
Probab=71.26 E-value=7.7 Score=38.60 Aligned_cols=66 Identities=27% Similarity=0.504 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
+..++++. ...+.|.++++|||||+..+. .|. . .++++..||.===||+. +++|...-.+.+.+.+
T Consensus 39 ~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~l~----~--~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~~~i 105 (287)
T PRK13057 39 DLSEVIEA-YADGVDLVIVGGGDGTLNAAAPALV----E--TGLPLGILPLGTANDLA---RTLGIPLDLEAAARVI 105 (287)
T ss_pred HHHHHHHH-HHcCCCEEEEECchHHHHHHHHHHh----c--CCCcEEEECCCCccHHH---HHcCCCCCHHHHHHHH
Confidence 44555555 356789999999999988764 332 2 25678889988788886 3455544344444433
No 81
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=71.23 E-value=8.7 Score=39.90 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC--------------CcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK--------------INVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~--------------~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--.+..|..++-.....+ -.+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 4788999999999999999999999999988765433211 126899999985
No 82
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=70.55 E-value=5 Score=41.61 Aligned_cols=64 Identities=34% Similarity=0.438 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHcCC----CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 159 DLHQIVDAIQTNAF----NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 159 ~~~~iv~~l~~~~I----d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
..+++++.+.+.++ |.++.|||--.+..|..++--. .+ ++++|.||-|. +..+|-+.|.-++++
T Consensus 72 ~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~r--g~p~i~VPTT~---lA~vD~~~g~K~~i~ 139 (354)
T cd08199 72 TVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RR--GTPYVRIPTTL---VGLIDAGVGIKTGVN 139 (354)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cC--CCCEEEEcCcc---ceeeecCCCCceEEe
Confidence 47888899999998 9999999988888888776432 23 57899999997 344466666665554
No 83
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=70.48 E-value=7.7 Score=39.74 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+++.+. |.++.|||--.+..|..++... .+ ++++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--~~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MR--GIRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-cc--CCCEEEecCch
Confidence 46888999999988 8999999999999888776432 23 57899999997
No 84
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.40 E-value=8.6 Score=39.46 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
+++++++.+++.+.|.+|-|||--++..|..++-. .++++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 65 EIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred HHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 46889999999999999999999999999988753 367899999883
No 85
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=70.20 E-value=8.5 Score=39.37 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--.+..|..++-.. ++++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTta 111 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCc
Confidence 478899999999999999999999999998887532 67899999885
No 86
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=70.20 E-value=96 Score=29.05 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=65.2
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
|||+...-..|-.+..+.++-+.+. .+|+. +.= +-+.+......+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~---------------------------------~~~~~~~~~~~~ 46 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALY-ENGYQ-MLL---------------------------------MNTNFSIEKEIE 46 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHH-HCCCE-EEE---------------------------------EeCCCCHHHHHH
Confidence 6888877778888888888888774 45542 210 001111122456
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--hHHHHHHHHHHHHHHh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQQAISAAHVE 240 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~~ai~~i~~~ 240 (447)
.++.|...++|++++.+.+.+.. +.+.+++.+ ++||.+ |.+.+. ..++++| .+...+++ .+..
T Consensus 47 ~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~----~~~~~~-~~~v~~d~~~~~~~~~~---~l~~- 111 (259)
T cd01542 47 ALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV----GQDYPG-ISSVVYDDYGAGYELGE---YLAQ- 111 (259)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE----eccCCC-CCEEEECcHHHHHHHHH---HHHH-
Confidence 67778889999999998765422 223344444 556554 333221 1335443 33333333 3332
Q ss_pred hhhcCCcEEEE
Q 042534 241 AESAVNGIGLV 251 (447)
Q Consensus 241 A~S~~~~v~iV 251 (447)
.. ++++.++
T Consensus 112 -~g-~~~i~~v 120 (259)
T cd01542 112 -QG-HKNIAYL 120 (259)
T ss_pred -cC-CCcEEEE
Confidence 23 6778877
No 87
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=70.12 E-value=4.4 Score=43.92 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=83.1
Q ss_pred EEccCCCCccHHHHHHHHHHHHHHh------cCCeEEEEEcccccccccCCCCeEECChhhhhchhccC--CccccccCC
Q 042534 85 IVTCGGLCPGLNTVIRELVVGLWEL------YGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLG--GTVLETSRG 156 (447)
Q Consensus 85 IvtsGG~~PGlN~vIr~vv~~~~~~------~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~G--Gt~LGssR~ 156 (447)
++-..+..| ..++..++...+.. .+-..|+-..++.... .+. .+-++.+.|..++..- -..+--.-+
T Consensus 140 ~IDt~~~s~--~e~~~~iv~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~ii~d~~v~~ly~~~l~~~~~~~~~g 214 (488)
T PRK13951 140 GIDTSKLNE--WETTALVVLEALDEKEISTIEKPHLVKIILGGFKRV-RNE--ELVFTTERVEKIYGRYLPENRLLFPDG 214 (488)
T ss_pred EEECCCCCH--HHHHHHHHHHhhhcceeeecCCceeEEEeccccccC-CCe--EEEEECCcHHHHHHHhhcccEEEecCC
Confidence 444455655 56666666554422 0111344333333333 223 5667777776544320 011100011
Q ss_pred c-----ccHHHHHHHHHHcCC---CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 157 G-----FDLHQIVDAIQTNAF---NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 157 ~-----~~~~~iv~~l~~~~I---d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
. ...+++++.|.+.++ |.++.|||--....|.-+|.-.. | +|+.|.||-|+ +..+|-|+|-=||+|
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~-R--Gi~~i~vPTTl---la~vDssiggK~~vn 288 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFK-R--GVGLSFYPTTL---LAQVDASVGGKNAID 288 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHh-c--CCCeEecCccH---HHHHhcCCCCCeeee
Confidence 1 137899999999999 99999999888887776665443 4 57799999997 467788999999888
Q ss_pred HH
Q 042534 229 MA 230 (447)
Q Consensus 229 ~~ 230 (447)
..
T Consensus 289 ~~ 290 (488)
T PRK13951 289 FA 290 (488)
T ss_pred CC
Confidence 63
No 88
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=70.11 E-value=2.9 Score=36.40 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcC-CCEEEEecCCCcHHHHHHHHHHHHHcCC--cceEeeecccccccccCcCcccChhhHHHH
Q 042534 160 LHQIVDAIQTNA-FNQVYIIGGDGTMRGAVEIFDEIQRRKI--NVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 160 ~~~iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~~~~~~~~~--~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
.+.+....+..+ .+.++++|||||+..+. ..+.+... ++++.-||.==-||+. +++|+.+-...
T Consensus 42 ~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 42 AEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred HHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 344444333334 48999999999988763 22233333 4588889988888887 46777776665
No 89
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=70.02 E-value=8.9 Score=39.62 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTIDND 213 (447)
+++++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|--.+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 478899999999999999999999999998886543211 1157899999886443
No 90
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=69.65 E-value=82 Score=29.72 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--hHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQQAISAA 237 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~~ai~~i 237 (447)
..+.++.|...++|++++++.+.+.... +.++++ +++||.+=... .+... .++++| .+...+++ .+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~--~iPvv~~~~~~-~~~~~--~~v~~d~~~~~~~~~~---~l 111 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPALL----DLLARR--GVPYVATWNYS-PDSPY--PCVGFDNREAGRLAAR---HL 111 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhC--CCCEEEEcCCC-CCCCC--CEEEeChHHHHHHHHH---HH
Confidence 4567778888999999999876543222 233334 46677652211 11111 234444 34444443 33
Q ss_pred HHhhhhcCCcEEEEE
Q 042534 238 HVEAESAVNGIGLVK 252 (447)
Q Consensus 238 ~~~A~S~~~~v~iVe 252 (447)
... . ++++.++-
T Consensus 112 ~~~--g-~~~i~~i~ 123 (268)
T cd06273 112 IAL--G-HRRIAMIF 123 (268)
T ss_pred HHC--C-CCeEEEEe
Confidence 322 3 56788884
No 91
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=69.33 E-value=7.8 Score=39.76 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.++++++.+++.+.|.++-|||--.+..|..++... ++++|.||-|--.+
T Consensus 64 ~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 64 NIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 578999999999999999999999999998887643 67899999986433
No 92
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=69.00 E-value=59 Score=32.82 Aligned_cols=93 Identities=10% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC-Cc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR-GG 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR-~~ 157 (447)
+..+||+++.+-..|--+.+++++...+. .+|+. +. +.++. ..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~-~~g~~-l~----------------------------------i~~~~~~~ 67 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAE-SLGAK-VF----------------------------------VQSANGNE 67 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHH-HcCCE-EE----------------------------------EECCCCCH
Confidence 57889999999999999999999998884 45542 22 11111 11
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccc
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVD 211 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTID 211 (447)
.+..+.++.+...++|++++.+.+.+... ..+ +.+.++ +++||.+-..++
T Consensus 68 ~~~~~~i~~l~~~~vDGiIi~~~~~~~~~-~~l-~~~~~~--~iPvV~id~~~~ 117 (330)
T PRK10355 68 ETQMSQIENMINRGVDVLVIIPYNGQVLS-NVI-KEAKQE--GIKVLAYDRMIN 117 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHC--CCeEEEECCCCC
Confidence 23557788899999999999976533111 112 333333 467887755443
No 93
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=68.81 E-value=8.7 Score=38.93 Aligned_cols=51 Identities=18% Similarity=0.391 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDN 212 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDN 212 (447)
..+++++.+++.+.|.++-|||--.+..|..++-... + ++++|.||-|--.
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 4788999999999999999999988998888876432 2 5789999988544
No 94
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=67.70 E-value=11 Score=39.42 Aligned_cols=33 Identities=12% Similarity=0.295 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 191 (447)
.++++++.+++.++|.++-|||--++..|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 468899999999999999999999999998876
No 95
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=67.62 E-value=11 Score=39.18 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc--------------CCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR--------------KINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~--------------~~~i~VVgIPkT 209 (447)
.++++++.+++.+.|.++-|||--.+..|..++-.+... ...+++|.||-|
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 478899999999999999999999999998876543221 124688999876
No 96
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=67.44 E-value=1.1e+02 Score=28.73 Aligned_cols=120 Identities=10% Similarity=0.095 Sum_probs=68.1
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++...-..|-.+..+.++.+.+. .+|+ .+.-+. +.........
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~~---------------------------------~~~~~~~~~~ 46 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAAS-AAGY-STIIGN---------------------------------SDENPETENR 46 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHH-HcCC-EEEEEe---------------------------------CCCCHHHHHH
Confidence 7888776677888889999988774 5564 333111 1111122457
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhhHHHHHHHHHHHHHHhh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQTAVEMAQQAISAAHVEA 241 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdTAv~~~~~ai~~i~~~A 241 (447)
+++.+.+.++|++++.+.+.... . .+++.+++ ++||. +|++.+.. -.+++.|-. ..+..+.+.+..
T Consensus 47 ~~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~--ipvV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~-- 113 (265)
T cd06299 47 YLDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRG--IPVVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLVA-- 113 (265)
T ss_pred HHHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCC--CCEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH--
Confidence 88889999999999998775532 2 34444544 56664 34544321 123444432 122233344432
Q ss_pred hhcCCcEEEE
Q 042534 242 ESAVNGIGLV 251 (447)
Q Consensus 242 ~S~~~~v~iV 251 (447)
.. +++|.++
T Consensus 114 ~g-~~~I~~i 122 (265)
T cd06299 114 LG-HKKIGYI 122 (265)
T ss_pred cC-CCcEEEE
Confidence 23 5677776
No 97
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=66.96 E-value=12 Score=38.84 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc----------------CCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR----------------KINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~----------------~~~i~VVgIPkTI 210 (447)
.++++++.+++.++|.+|-|||--++..|..++-..... ...+++|.||-|=
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 478899999999999999999999999998876321110 1236788888763
No 98
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=66.85 E-value=1.2e+02 Score=28.88 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=47.8
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC-cccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG-GFDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~-~~~~ 160 (447)
|||+|...-.-|-...++.++...+. .+|. ..+.-. ..+.+.. ....
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~-~~g~----------~~~~~~---------------------~~~~~~~~~~~~ 48 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAA-AFPD----------ARIRVR---------------------IHFVESFDPAAL 48 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHh-hhhc----------cCceEE---------------------EEEccCCCHHHH
Confidence 57888776666777777888877664 3332 111100 0000000 1123
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+.++.+.+ ++|+++++..+.+. .....+++.+. +++||.+
T Consensus 49 ~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~--~ipvV~~ 89 (275)
T cd06307 49 AAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAA--GVPVVTL 89 (275)
T ss_pred HHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHC--CCcEEEE
Confidence 466777878 99999999876432 11222444444 4566633
No 99
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=66.84 E-value=12 Score=38.68 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.++++++.+++.+.|.++.|||--.+..|..++- .+ ++++|.||-|.-+|
T Consensus 75 ~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~---~r--gip~I~IPTT~~td 124 (350)
T PRK00843 75 EVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAY---RL--GIPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHH---hc--CCCEEEeCCCccCC
Confidence 4788999999999999999999888888887762 23 57899999996433
No 100
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=66.27 E-value=12 Score=40.56 Aligned_cols=99 Identities=13% Similarity=0.232 Sum_probs=59.6
Q ss_pred eEEEEEcccccccccCCCCeEECChhhhhchhccCCc---cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHH-H
Q 042534 113 RQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT---VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGA-V 188 (447)
Q Consensus 113 ~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt---~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A-~ 188 (447)
++++-|.|=..|=-. -..+-++.+..+...-|- +.-|.+. -+..++++.+...+.|.++++|||||+..+ +
T Consensus 112 kr~lvIvNP~SGkg~----a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvN 186 (481)
T PLN02958 112 KRLLVFVNPFGGKKS----ASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVN 186 (481)
T ss_pred cEEEEEEcCCCCCcc----hhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHH
Confidence 466767766555221 111222346655554442 3334433 355667777777789999999999998765 3
Q ss_pred HHHHHH-HHcCCcceEeeecccccccccC
Q 042534 189 EIFDEI-QRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 189 ~L~~~~-~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
-|.+.- .+.+.++++--||.==-||+.-
T Consensus 187 GL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 187 GLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred HHhhCccccccccCceEEecCcCcchhhh
Confidence 343210 0013467888899999999973
No 101
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=66.22 E-value=12 Score=39.08 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkTI 210 (447)
+++++++.+++.+.|.++-|||--++..|..++-.... ....+++|.||-|=
T Consensus 76 ~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 76 NVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 47899999999999999999999999999888642211 01357889999774
No 102
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=66.13 E-value=12 Score=39.45 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC-------------CcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK-------------INVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~-------------~~i~VVgIPkT 209 (447)
.+++.++.+++.+.|.++-|||--++..|..++-.....+ -.+++|.||-|
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 3788999999999999999999999999988765422111 13678888876
No 103
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=66.06 E-value=12 Score=38.98 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc---------------CCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR---------------KINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~---------------~~~i~VVgIPkT 209 (447)
.++++++.+++.+.|.++-|||--.+..|..++-..... ...+++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467899999999999999999999999998776432211 124789999988
No 104
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=66.00 E-value=12 Score=38.78 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkT 209 (447)
.++++++.+++.++|.++-|||--.+..|..++-.... ....+++|.||-|
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 68 SVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 47889999999999999999999999999877632110 1235789999988
No 105
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.22 E-value=93 Score=29.53 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=56.6
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
.|||+...=..|-.+.+++++.+.+. .+|+. ++-. .+........
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~-~~g~~-~~~~---------------------------------~~~~~~~~~~ 45 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLR-AAGYS-LLIA---------------------------------NSLNDPEREL 45 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHH-HcCCE-EEEE---------------------------------eCCCChHHHH
Confidence 37888877678999999999988874 45542 2210 0111112246
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVD 211 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTID 211 (447)
++++.+.+.++|++++.+++.... .+.+.++++ +++||.+=...+
T Consensus 46 ~~i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~--~ipvV~i~~~~~ 90 (269)
T cd06281 46 EILRSFEQRRMDGIIIAPGDERDP---ELVDALASL--DLPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHcCCCEEEEecCCCCcH---HHHHHHHhC--CCCEEEEecccC
Confidence 778889999999999998764322 233444444 466776644444
No 106
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=65.01 E-value=13 Score=38.54 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTI 210 (447)
.++++++.+++.++|.++-|||--.+..|..++-..... ...+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 71 VVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 478899999999999999999999999988776533110 1257899999883
No 107
>PLN02834 3-dehydroquinate synthase
Probab=64.78 E-value=6.2 Score=42.14 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHcCCC---EEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 159 DLHQIVDAIQTNAFN---QVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
.++++++.+.+.++| .++.|||--.+..|..++-.. .+ ++++|.||-|. +..+|.+.|--++++
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~r--giplI~VPTTl---lA~vDss~ggK~~i~ 214 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QR--GVNFVQIPTTV---MAQVDSSVGGKTGVN 214 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCcC---CeEEecCCCceeEEe
Confidence 467888999999998 999999998888887665322 23 57899999995 444555555544443
No 108
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=64.28 E-value=1.5e+02 Score=29.15 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=72.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-.-|-.+.++.++.+.+. .+|+ .+.-.. +.......
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~-~~gy-~~~i~~---------------------------------~~~~~~~~ 105 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCR-EAGY-QLLIAC---------------------------------SDDNPDQE 105 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHH-HCCC-EEEEEe---------------------------------CCCCHHHH
Confidence 569998866566778888888887774 4554 221100 00111123
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHHHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv~~~~~ai~~i~~ 239 (447)
.+.++.|..+++|++++.+.+.... ...+.+.+. +++||.+ |.+.+..+ .+++.|-.- .+..+++.+..
T Consensus 106 ~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~--~iPvV~~----~~~~~~~~~~~V~~dn~~-~~~~~~~~L~~ 175 (327)
T TIGR02417 106 KVVIENLLARQVDALIVASCMPPED---AYYQKLQNE--GLPVVAL----DRSLDDEHFCSVISDDVD-AAAELIERLLS 175 (327)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCh---HHHHHHHhc--CCCEEEE----ccccCCCCCCEEEeCcHH-HHHHHHHHHHH
Confidence 5677888999999999988654211 122333333 4666644 43332211 234444311 12333333332
Q ss_pred hhhhcCCcEEEEEe-c------CCccchHHHHH
Q 042534 240 EAESAVNGIGLVKL-M------GRSTGHIALHA 265 (447)
Q Consensus 240 ~A~S~~~~v~iVev-M------GR~sG~lAl~a 265 (447)
.. |++|.++-- . -|..||..+..
T Consensus 176 --~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 205 (327)
T TIGR02417 176 --QH-ADEFWYLGAQPELSVSRDRLAGFRQALK 205 (327)
T ss_pred --CC-CCeEEEEeCcccchhHHHHHHHHHHHHH
Confidence 22 678888741 1 25667766543
No 109
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=64.11 E-value=1.1e+02 Score=28.72 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChh--hHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQ--TAVEMAQQAISA 236 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFd--TAv~~~~~ai~~ 236 (447)
..++++.+...++|++++.+.+.+.. +.+++++. ++++|.+ |++.+... .++++| .+.+.+++.+.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~--~ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRS--PTPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcC--CCCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45677778889999999998654432 22333333 5667765 33322221 234443 555555544433
Q ss_pred HHHhhhhcCCcEEEEE
Q 042534 237 AHVEAESAVNGIGLVK 252 (447)
Q Consensus 237 i~~~A~S~~~~v~iVe 252 (447)
.. |+++.++-
T Consensus 114 -----~g-~~~i~~l~ 123 (268)
T cd06298 114 -----NG-HKKIAFIS 123 (268)
T ss_pred -----cC-CceEEEEe
Confidence 23 67788884
No 110
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=64.04 E-value=9.9 Score=39.43 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcCCC---EEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFN---QVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++.+.+.++| .++.|||--.+..|..++-.. .+ ++++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~r--gip~I~IPTTl 120 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FR--GIRLVHIPTTL 120 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcc
Confidence 478899999999999 999999988888887666432 23 57899999985
No 111
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.77 E-value=1.8e+02 Score=29.70 Aligned_cols=180 Identities=9% Similarity=0.020 Sum_probs=90.5
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG- 157 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~- 157 (447)
...+|+++...-.-|=.+.+..++-+.+. .+|+ ++. + . +.+...
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~-~~G~-~v~-~-~-------------------------------~~~~~d~ 66 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGK-ELGV-DVT-Y-D-------------------------------GPTEPSV 66 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHH-HhCC-EEE-E-E-------------------------------CCCCCCH
Confidence 34589999988889999999999988874 4564 232 0 0 011111
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhhHHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdTAv~~~~~ai~ 235 (447)
....++++.+...++|++++..-|.+. -...| +.+.+. +|+||. +|+|+... ...+|.++.-.....+.+
T Consensus 67 ~~q~~~i~~li~~~vdgIiv~~~d~~a-l~~~l-~~a~~~--gIpVV~----~d~~~~~~~~~~~V~~~~~~~~G~~~~~ 138 (336)
T PRK15408 67 SGQVQLINNFVNQGYNAIIVSAVSPDG-LCPAL-KRAMQR--GVKVLT----WDSDTKPECRSYYINQGTPEQLGSMLVE 138 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHH-HHHHHC--CCeEEE----eCCCCCCccceEEEecCCHHHHHHHHHH
Confidence 123467888999999999998655331 11222 334444 567774 56665432 233454333222222222
Q ss_pred HHHHhhhhcCCcEEEEEe-cC--CccchHH-HHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCC
Q 042534 236 AAHVEAESAVNGIGLVKL-MG--RSTGHIA-LHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG 302 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVev-MG--R~sG~lA-l~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~ 302 (447)
.+......-+.+|.++.- ++ .+..|.. ....++...+++.+++.. +.-+....-.+.+++.++.+.
T Consensus 139 ~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~-~~~~d~~~a~~~~~~lL~~~p 208 (336)
T PRK15408 139 MAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQ-FGYNDATKSLQTAEGILKAYP 208 (336)
T ss_pred HHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeec-CCCCcHHHHHHHHHHHHHHCC
Confidence 222222212456766642 22 1123332 222343323666666532 221112233445555565543
No 112
>PRK12361 hypothetical protein; Provisional
Probab=63.50 E-value=16 Score=39.93 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCccc-Chh
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSF-GFQ 224 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~-GFd 224 (447)
+..++++...+.+.|.++++|||||...+.. .+.. .++++--||.==-||+. +++ |..
T Consensus 285 ~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~--~~~~lgiiP~GTgNdfA---r~L~gi~ 343 (547)
T PRK12361 285 SAEALAKQARKAGADIVIACGGDGTVTEVAS---ELVN--TDITLGIIPLGTANALS---HALFGLG 343 (547)
T ss_pred cHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhc--CCCCEEEecCCchhHHH---HHhcCCC
Confidence 4566666666778999999999999887642 2222 24667778987788887 445 554
No 113
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=63.29 E-value=15 Score=37.95 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH------------cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR------------RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~------------~~~~i~VVgIPkTI 210 (447)
+.+++++.+++.+.|.++-|||--++..|..++-.... ....+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 71 TIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 47889999999999999999999999999877632211 11257899999884
No 114
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=63.20 E-value=1.8e+02 Score=29.65 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=96.5
Q ss_pred EEEccCCCCccHH-HHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCc-cccccCCc----
Q 042534 84 AIVTCGGLCPGLN-TVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT-VLETSRGG---- 157 (447)
Q Consensus 84 aIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt-~LGssR~~---- 157 (447)
-|+.+||+.=-++ .-+..+++.+.. .+ .+--++-|.+..+.. ...+|++.++.+...|=. .++..-..
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~-i~--~v~~iri~Tr~~v~~---p~rit~ell~~L~~~g~~v~i~l~~~h~~el 212 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAA-ID--HVKIVRFHTRVPVAD---PARVTPALIAALKTSGKTVYVALHANHAREL 212 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHh-CC--CccEEEEeCCCcccC---hhhcCHHHHHHHHHcCCcEEEEecCCChhhc
Confidence 3778899876553 578888888854 33 233334444444332 233577777777666522 34432211
Q ss_pred -ccHHHHHHHHHHcCCCEEE---Ee-cCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHH
Q 042534 158 -FDLHQIVDAIQTNAFNQVY---II-GGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQ 232 (447)
Q Consensus 158 -~~~~~iv~~l~~~~Id~L~---vI-GGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ 232 (447)
.+..+.++.|++.||..+. ++ |=|++.....+|.+.+.+.|...-.+....- +++ +--|.+..+.+.+
T Consensus 213 ~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p----~~g---~~~f~~~~~~~~~ 285 (321)
T TIGR03822 213 TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDL----APG---TAHFRVTIEEGQA 285 (321)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCC----CCC---cccccCcHHHHHH
Confidence 2467888999999997644 33 5567777777888877776644222222211 112 2345677788888
Q ss_pred HHHHHHHhhhhcCCcEEEEEecCCc
Q 042534 233 AISAAHVEAESAVNGIGLVKLMGRS 257 (447)
Q Consensus 233 ai~~i~~~A~S~~~~v~iVevMGR~ 257 (447)
.+..++.-.......-+++|+.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 8888776555433456788887753
No 115
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=62.95 E-value=15 Score=38.12 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--.+..|..++-. .++++|.||-|-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTta 118 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCcc
Confidence 46789999999999999999999999998888742 367899999883
No 116
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=62.91 E-value=15 Score=38.05 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-----------------cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-----------------RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-----------------~~~~i~VVgIPkTI 210 (447)
.++++++.+++.++|.+|-|||--.+..|..++-.... ...++++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 47889999999999999999999999999887654211 01357899999883
No 117
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=62.80 E-value=1.4e+02 Score=28.38 Aligned_cols=82 Identities=10% Similarity=-0.042 Sum_probs=46.5
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++...=.-|-....+.++.+.+. .+|.. +. +-++....+..+
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~-~~gy~-~~----------------------------------~~~~~~~~~~~~ 45 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALL-EQRYD-LA----------------------------------LFPLLSLARLKR 45 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHH-HCCCE-EE----------------------------------EEeCCCcHHHHH
Confidence 5666654455777888888888774 44432 11 111121122344
Q ss_pred HHH-HHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 163 IVD-AIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 163 iv~-~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+. .+..+++|++++.+.+-... ..+.+.+.+ ++||.+
T Consensus 46 ~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~--iPvv~~ 84 (269)
T cd06297 46 YLESTTLAYLTDGLLLASYDLTER----LAERRLPTE--RPVVLV 84 (269)
T ss_pred HHHHHHHhcCCCEEEEecCccChH----HHHHHhhcC--CCEEEE
Confidence 454 58899999999998764432 223344444 455544
No 118
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=62.36 E-value=16 Score=36.91 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHH-HHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh-HHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRG-AVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT-AVEMAQQAISA 236 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~-A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT-Av~~~~~ai~~ 236 (447)
+..++++.+...+.|.+++.|||||... ++.|++ ++... +--||.===||+. +++|... ....+.+.+..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~~ 117 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIKS 117 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHHc
Confidence 5778888888889999999999999874 455654 33222 6667877778876 5677777 36666666544
No 119
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=62.30 E-value=16 Score=38.05 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--.+..|..++-.... ....+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 47889999999999999999999999999887642211 11357888888774
No 120
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=62.29 E-value=14 Score=38.34 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH------------------cCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR------------------RKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~------------------~~~~i~VVgIPkTI 210 (447)
+++++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 47888999999999999999999999999887643210 01247899999874
No 121
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=62.13 E-value=15 Score=37.77 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV 214 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi 214 (447)
..+++++.+++.+.|.+|-|||--.+..|..++.. ..+++|.||-|--.|-
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgs 115 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 47889999999999999999999999999888743 3578999998854443
No 122
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=61.81 E-value=1.1e+02 Score=28.68 Aligned_cols=120 Identities=11% Similarity=0.108 Sum_probs=65.8
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++..--.-|-.+.++.++-+.+. .+|+ .+.=+. +.........
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~-~~g~-~~~~~~---------------------------------~~~~~~~~~~ 46 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCR-AHGY-QVLVCN---------------------------------SDNDPEKEKE 46 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHH-HcCC-EEEEEc---------------------------------CCCCHHHHHH
Confidence 5666655577888889999988874 4554 221100 0000112356
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHHHHHHHHHHHHHHhh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAVEMAQQAISAAHVEA 241 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv~~~~~ai~~i~~~A 241 (447)
.++.+...++|++++.+.+.... .+ +++.+. +++||.+ |++++... .++|+|- .+....+.+.+...
T Consensus 47 ~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~--~ipvV~~----~~~~~~~~~~~v~~d~-~~~g~~~~~~l~~~- 114 (267)
T cd06283 47 YLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKN--GKPVVLV----DRKIPELGVDTVTLDN-YEAAKEAVDHLIEK- 114 (267)
T ss_pred HHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcC--CCCEEEE----cCCCCCCCCCEEEecc-HHHHHHHHHHHHHc-
Confidence 77788889999999998775432 13 333333 5667764 44443221 3466543 12233333333322
Q ss_pred hhcCCcEEEE
Q 042534 242 ESAVNGIGLV 251 (447)
Q Consensus 242 ~S~~~~v~iV 251 (447)
. ++++.++
T Consensus 115 -g-~~~i~~l 122 (267)
T cd06283 115 -G-YERILFV 122 (267)
T ss_pred -C-CCcEEEE
Confidence 3 5677777
No 123
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=61.27 E-value=1.7e+02 Score=28.70 Aligned_cols=69 Identities=6% Similarity=0.134 Sum_probs=45.4
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-.-|-.+.++.++-..+. .+|+ +++-.. +.......
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~~---------------------------------~~~~~~~~ 101 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCF-ERGY-SLVLCN---------------------------------TEGDEQRM 101 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHH-HcCC-EEEEEe---------------------------------CCCCHHHH
Confidence 569998866667888889999988874 4554 221100 00011123
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTM 184 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~ 184 (447)
.++++.|...++|++++.+.+.+.
T Consensus 102 ~~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 102 NRNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcch
Confidence 567788889999999999877543
No 124
>PRK09330 cell division protein FtsZ; Validated
Probab=61.19 E-value=1.8e+02 Score=30.71 Aligned_cols=137 Identities=19% Similarity=0.291 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecC--CCcHHHHH-HHHHHHHHcC-CcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGG--DGTMRGAV-EIFDEIQRRK-INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGG--dgS~~~A~-~L~~~~~~~~-~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai 234 (447)
+.++|.+.|+ +-|++|++-| -||=+||. .+++.+++.+ +-+.||-.|-+-+.- .-.+.+.+.+
T Consensus 87 ~~e~I~~~l~--~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~-----------~r~~nA~~gL 153 (384)
T PRK09330 87 SREEIREALE--GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGK-----------KRMKQAEEGI 153 (384)
T ss_pred HHHHHHHHHc--CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccch-----------hHHHHHHHHH
Confidence 3567777776 7899999865 34444443 4566666666 345555555322111 1234455566
Q ss_pred HHHHHhhhhcC--CcEEEEEecCCccchHHHHH----hhcc---CCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEE
Q 042534 235 SAAHVEAESAV--NGIGLVKLMGRSTGHIALHA----TLSS---RDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAV 305 (447)
Q Consensus 235 ~~i~~~A~S~~--~~v~iVevMGR~sG~lAl~a----aLA~---~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~v 305 (447)
.+++..+.+.- ..=-+.+..+++.+..-++. .|+. +-.+++-.|-. ..+ -++.++..++..|.++
T Consensus 154 ~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~pG~-iNv-----DfaDvk~vm~~~G~a~ 227 (384)
T PRK09330 154 EELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPGL-INL-----DFADVKTVMSEMGLAM 227 (384)
T ss_pred HHHHHHCCEEEEEecHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccC-----CHHHHHHHHhcCCeEE
Confidence 66655544410 11123444444444332111 1110 01233222221 122 2457788888889999
Q ss_pred EEEecCCCC
Q 042534 306 LVVAEGAGQ 314 (447)
Q Consensus 306 IvvaEGa~~ 314 (447)
+=++|+-++
T Consensus 228 ~G~G~a~g~ 236 (384)
T PRK09330 228 MGIGEASGE 236 (384)
T ss_pred EEEEEecCc
Confidence 999888664
No 125
>PRK15138 aldehyde reductase; Provisional
Probab=60.60 E-value=17 Score=38.14 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD 192 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~ 192 (447)
.++++++.+++.+.|.++-|||--++..|..++-
T Consensus 73 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 73 TLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 4788999999999999999999999999988764
No 126
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=60.07 E-value=1.3e+02 Score=28.48 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
.+++.+.+.+.++|++++.+.+..... + +++.+. +|+||.+-...
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~~~~~~~---~-~~~~~~--~ipvV~~~~~~ 97 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQHDQDPL---P-ERLAET--GLPFVVWGRPL 97 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChHH---H-HHHHhC--CCCEEEECCcc
Confidence 356667788899999999987654221 2 344443 56777664433
No 127
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=60.06 E-value=6.4 Score=40.38 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred EECChhhhhchhccCCcccccc--CCc--c-cHHHHHHHHHHcCC-----------------CEEEEecCCCcHHHHHH-
Q 042534 133 LVLNPKMVRGWHKLGGTVLETS--RGG--F-DLHQIVDAIQTNAF-----------------NQVYIIGGDGTMRGAVE- 189 (447)
Q Consensus 133 ~~L~~~~v~~i~~~GGt~LGss--R~~--~-~~~~iv~~l~~~~I-----------------d~L~vIGGdgS~~~A~~- 189 (447)
..|+++.+......-||-.|-- ..+ . -.+.+++.|.+-+| |++|-.|||||+-.|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 4588888888887777644321 111 1 15677777877764 79999999999766543
Q ss_pred HHHHHHHcCCcceEeee
Q 042534 190 IFDEIQRRKINVGVVGI 206 (447)
Q Consensus 190 L~~~~~~~~~~i~VVgI 206 (447)
+.+ -..+||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 543 26789997
No 128
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=59.86 E-value=18 Score=37.62 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc---------------CCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR---------------KINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~---------------~~~i~VVgIPkTI 210 (447)
..+++++.+++.+.|.++-|||--++..|..++-..... .-.+++|.||-|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 467889999999999999999999999997665322110 1247899999883
No 129
>PRK06186 hypothetical protein; Validated
Probab=59.24 E-value=19 Score=35.34 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=36.6
Q ss_pred CCCEEEEecCCCc--HHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhh
Q 042534 171 AFNQVYIIGGDGT--MRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAES 243 (447)
Q Consensus 171 ~Id~L~vIGGdgS--~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S 243 (447)
++|+++|.||.|. ..|.....++++++ ++++.| -|+|++.|+=..+.-+-. ..+|.|
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~--~iP~LG-------------IClGmQ~avIe~arnv~g-~~dA~s 111 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFAREN--GIPFLG-------------TCGGFQHALLEYARNVLG-WADAAH 111 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHc--CCCeEe-------------echhhHHHHHHHHhhhcC-CcCCCc
Confidence 7799999999997 34445556666544 344555 499999876555543322 235555
No 130
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=58.26 E-value=20 Score=37.14 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHc---CCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeecccc
Q 042534 159 DLHQIVDAIQTN---AFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~---~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTI 210 (447)
+++++++..++. ++|.++-|||--++..|..++-..... +-.+++|.||-|=
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 367888888888 999999999999999998886543211 1135689999774
No 131
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=58.02 E-value=2e+02 Score=28.46 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=74.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-.-|-.+.++.++...+. .+|. .++-+ -+.......
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~-~~g~-~~~~~---------------------------------~~~~~~~~~ 109 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALE-AQGR-MVFLL---------------------------------QGGKDGEQL 109 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHH-HcCC-EEEEE---------------------------------eCCCCHHHH
Confidence 569999977778889999999988874 4453 22100 011111234
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc--cCcCcccChh--hHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV--GIIDRSFGFQ--TAVEMAQQAISA 236 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi--~~tD~s~GFd--TAv~~~~~ai~~ 236 (447)
.+.++.|...++|++++.+.+.... .+.+.+.+. ++++|.+ |++. ... .+++.| .+...+++.+-.
T Consensus 110 ~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~--~iPvV~~----~~~~~~~~~-~~V~~D~~~~~~~a~~~L~~ 179 (342)
T PRK10014 110 AQRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEK--GIPVVFA----SRASYLDDV-DTVRPDNMQAAQLLTEHLIR 179 (342)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhc--CCCEEEE----ecCCCCCCC-CEEEeCCHHHHHHHHHHHHH
Confidence 5778888899999999998765322 222333444 4566644 3221 111 124433 344444443321
Q ss_pred HHHhhhhcCCcEEEEEe-------cCCccchHHHH
Q 042534 237 AHVEAESAVNGIGLVKL-------MGRSTGHIALH 264 (447)
Q Consensus 237 i~~~A~S~~~~v~iVev-------MGR~sG~lAl~ 264 (447)
.. |++|.++-- .-|..||..+.
T Consensus 180 -----~G-~~~I~~i~g~~~~~~~~~R~~Gf~~al 208 (342)
T PRK10014 180 -----NG-HQRIAWLGGQSSSLTRAERVGGYCATL 208 (342)
T ss_pred -----CC-CCEEEEEcCCcccccHHHHHHHHHHHH
Confidence 23 667887731 23556776654
No 132
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=57.90 E-value=19 Score=37.35 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHH----------Hc-------CCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQ----------RR-------KINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~----------~~-------~~~i~VVgIPkT 209 (447)
.++++++.+++.+.|.++-|||--.+..|..++-... .. +-.+++|.||-|
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 4778899999999999999999999999987764321 00 124789999987
No 133
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=56.26 E-value=1.4e+02 Score=28.22 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=48.9
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++...=.-|-.+.++.++-+.+. .+|+. +.-. .+........+
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~---------------------------------~~~~~~~~~~~ 46 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALAR-ERGYQ-LLIA---------------------------------CSDDDPETERE 46 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHH-HCCCE-EEEE---------------------------------eCCCCHHHHHH
Confidence 5666655556777777777777664 35542 2110 01111123567
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+++.|...++|++++.+.+..-.. + +++.+. +++||.+
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~--~ipvV~~ 84 (264)
T cd06274 47 TVETLIARQVDALIVAGSLPPDDP---Y-YLCQKA--GLPVVAL 84 (264)
T ss_pred HHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhc--CCCEEEe
Confidence 888899999999999987643221 2 233344 4567766
No 134
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=55.85 E-value=24 Score=37.16 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHH-------------cCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR-------------RKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~-------------~~~~i~VVgIPkT 209 (447)
..++.++.+++.+.|.+|-+||--++..|..++-.... ..-+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 36888999999999999999999999998877544332 1122677888866
No 135
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.73 E-value=44 Score=33.28 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=62.3
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQ 168 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~ 168 (447)
+|....-.+.+++.+.+..++++|.-+...+. +... +.....+.+...|+.+.++.+.. .|+...+..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g~~-----~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~ 187 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WGRT-----SADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLR 187 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--HhHH-----HHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHH
Confidence 44445555566666545556666665543322 1111 11222233445677777665532 47889999999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
+.+-|.+++.|..+ .+..+.+.+++.|++.++++
T Consensus 188 ~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 188 DANPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred hcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 99999988876433 34456677778888776664
No 136
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=55.64 E-value=70 Score=30.95 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=42.1
Q ss_pred ChhhhhchhccCCccc-----ccc--CCcc-cHHHHHHHHHHcCCCEEEEecC---CCcHHHHHHHHHHHHHcCCcceEe
Q 042534 136 NPKMVRGWHKLGGTVL-----ETS--RGGF-DLHQIVDAIQTNAFNQVYIIGG---DGTMRGAVEIFDEIQRRKINVGVV 204 (447)
Q Consensus 136 ~~~~v~~i~~~GGt~L-----Gss--R~~~-~~~~iv~~l~~~~Id~L~vIGG---dgS~~~A~~L~~~~~~~~~~i~VV 204 (447)
+++..+.|...||.+| ++. |..| .+.+++..|- +++|+++. .||+.+|..-. +. +-+|.
T Consensus 116 n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls----~~vivve~~~~sGtl~ta~~A~----~~--gr~v~ 185 (220)
T TIGR00732 116 NSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLS----RAVLVVEAPLKSGALITARYAL----EQ--GREVF 185 (220)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhc----CEEEEEECCCCCchHHHHHHHH----Hh--CCcEE
Confidence 3455667777887766 111 1112 3566666655 77899987 47776665333 33 45799
Q ss_pred eecccccc
Q 042534 205 GIPKTVDN 212 (447)
Q Consensus 205 gIPkTIDN 212 (447)
++|..|++
T Consensus 186 ~~pg~~~~ 193 (220)
T TIGR00732 186 AYPGDLNS 193 (220)
T ss_pred EEcCCCCC
Confidence 99999886
No 137
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=55.64 E-value=23 Score=36.99 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkT 209 (447)
+..+.++.+++.+.|.++-|||--.+..|..++-..... +-.+++|.||-|
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 356677888899999999999999999998887543211 115789999987
No 138
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=55.50 E-value=14 Score=28.14 Aligned_cols=45 Identities=13% Similarity=0.431 Sum_probs=28.4
Q ss_pred CChhhhhchhccCCccccccCCcccHHHHHHHHHHcCCCEEEEecCC-CcHHHHHHHHHHH
Q 042534 135 LNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGD-GTMRGAVEIFDEI 194 (447)
Q Consensus 135 L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGd-gS~~~A~~L~~~~ 194 (447)
++++.|+.+.++| |+.+++++.|++.||+.+ | .+..+.+++-||+
T Consensus 8 i~~~lVd~F~~mG----------F~~dkVvevlrrlgik~~-----n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 8 IDKDLVDQFENMG----------FERDKVVEVLRRLGIKSM-----NGVDNETENKILEEL 53 (55)
T ss_dssp -SHHHHHHHHHHT------------HHHHHHHHHHS--SS-------SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHcC----------CcHHHHHHHHHHhCCCCC-----CCccchhHHHHHHHH
Confidence 5666677776665 889999999999999865 4 4567778887775
No 139
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=55.47 E-value=77 Score=27.85 Aligned_cols=79 Identities=14% Similarity=0.291 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCeEEEEEcccccccccC-C--CC-----eEECChhhhhchhccCCccccccCCc--ccHHHHHHHHHHcC
Q 042534 102 LVVGLWELYGVRQILGIQAGYRGFYST-T--RN-----PLVLNPKMVRGWHKLGGTVLETSRGG--FDLHQIVDAIQTNA 171 (447)
Q Consensus 102 vv~~~~~~~~~~~V~Gi~~G~~GL~~~-~--~~-----~~~L~~~~v~~i~~~GGt~LGssR~~--~~~~~iv~~l~~~~ 171 (447)
+++.+++.. .-++++-.|..=+++. . .+ +=.++++..+.+...|-.++-.. .+ .|.+++++.+.+++
T Consensus 8 ~~~~l~~~~--~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~ 84 (123)
T PF04263_consen 8 FFKNLWKNA--DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQG 84 (123)
T ss_dssp HHHHHHHTT--SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTT
T ss_pred HHHhhhhcC--CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCC
Confidence 344454433 3577888888777665 4 11 22266666676777766666555 33 47999999999999
Q ss_pred CCEEEEecCCCc
Q 042534 172 FNQVYIIGGDGT 183 (447)
Q Consensus 172 Id~L~vIGGdgS 183 (447)
.+-++++|+-|.
T Consensus 85 ~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 85 PDEIIVLGALGG 96 (123)
T ss_dssp TSEEEEES-SSS
T ss_pred CCEEEEEecCCC
Confidence 999999999997
No 140
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=55.36 E-value=17 Score=37.98 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCC---EEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 160 LHQIVDAIQTNAFN---QVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 160 ~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
..++.+.+.+.+.+ .++.|||--.+..|..++-. ..| ++++|.||-| =+..+|.+.|--|+++.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~r--Gip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHR--GVRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcC--CCCEEEECCC---chhhhCCCeeeeecccC
Confidence 57899999999998 99999998888877777653 334 4789999999 23566777777776665
No 141
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.80 E-value=23 Score=36.32 Aligned_cols=47 Identities=11% Similarity=0.298 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
..+++++..++.+.|.++-|||--.+..|..++-. +++++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~ 112 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcc
Confidence 46788888999999999999999999999888754 367899999874
No 142
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=54.19 E-value=28 Score=35.93 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcC--CCEEEEecCCCcHHHHHHHHHHHHHc-----------C------CcceEeeeccc
Q 042534 159 DLHQIVDAIQTNA--FNQVYIIGGDGTMRGAVEIFDEIQRR-----------K------INVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~~~~~~~-----------~------~~i~VVgIPkT 209 (447)
..+++++.+++.+ .|.++-|||--.+..|..++-..... + -.+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT 135 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC
Confidence 4678888888887 99999999999999987765432111 0 24678888877
No 143
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=53.92 E-value=24 Score=36.71 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------------CCcceEeeeccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------------KINVGVVGIPKTVD 211 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------------~~~i~VVgIPkTID 211 (447)
..+++++.+++.+.|.++-|||--.+..|..++-..... ...+++|.||-|--
T Consensus 74 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTag 139 (382)
T cd08187 74 TVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAA 139 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCc
Confidence 467889999999999999999988888888775432110 13578999998753
No 144
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=53.56 E-value=2e+02 Score=27.26 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=41.0
Q ss_pred eEEEEccCC--CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 82 RAAIVTCGG--LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 82 kiaIvtsGG--~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
|||+|...+ .-|-...++.++-+.+. .+|.. +.- ..+. ...+
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~-~~gy~-~~~---------------------------------~~~~-~~~~ 44 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEK-ELGVE-VKY---------------------------------VESV-EDAD 44 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHH-hcCce-EEE---------------------------------EecC-CHHH
Confidence 688888652 36888888888887764 34431 110 1111 1223
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGD 181 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGd 181 (447)
..++++.|...++|++|+.+.+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 45 YEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 4577888999999999998755
No 145
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=53.22 E-value=2.4e+02 Score=28.03 Aligned_cols=65 Identities=6% Similarity=-0.012 Sum_probs=42.9
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
..||++...-.-|-...++.++-..+. .+|.. ++ + .++... ..
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~-~~gy~-~~---------~-------------------------~~~~~~~~~ 103 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQ-QHQKY-VL---------I-------------------------GNSYHEAEK 103 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHH-HCCCE-EE---------E-------------------------EcCCCChHH
Confidence 469999877677888888888888774 44432 11 1 001111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGD 181 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGd 181 (447)
..+.++.|...++|++++.+..
T Consensus 104 ~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 104 ERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 3467778888999999999754
No 146
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=52.85 E-value=21 Score=36.53 Aligned_cols=45 Identities=4% Similarity=0.169 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
..+++++.+++ +.|.++-|||--.+..|..++.. ..+++|.||-|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~-----~~~p~i~IPTT 113 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK-----TGIPYISVPTA 113 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh-----cCCCEEEecCc
Confidence 35677777777 99999999999999999888742 25789999999
No 147
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=52.45 E-value=31 Score=35.92 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-------CC------cceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-------KI------NVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-------~~------~i~VVgIPkTI 210 (447)
..+++++.+++.+.|.++-|||--.+..|..++-..... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 367788889999999999999999999997765422111 11 36899999885
No 148
>PRK10586 putative oxidoreductase; Provisional
Probab=50.90 E-value=21 Score=37.16 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ 224 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd 224 (447)
+.+++.+..+ .+.|.+|-|||--++..|..++.. .++++|.||-|--+|-..+..+.-++
T Consensus 75 ~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 75 DVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 3455555544 588999999999999999988753 36789999999888876655544443
No 149
>PRK05670 anthranilate synthase component II; Provisional
Probab=50.87 E-value=26 Score=32.55 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 167 IQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 167 l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
+++++.|+||+-||.|+-..+....+.+++-..+++|.|| |+|++--..
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~ 87 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGE 87 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHH
Confidence 3566799999999999976654333333222223566665 899886433
No 150
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.77 E-value=43 Score=30.93 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=6.4
Q ss_pred cceEeeecc
Q 042534 200 NVGVVGIPK 208 (447)
Q Consensus 200 ~i~VVgIPk 208 (447)
.++|||||-
T Consensus 80 ~lPViGVPv 88 (162)
T COG0041 80 PLPVIGVPV 88 (162)
T ss_pred CCCeEeccC
Confidence 467888884
No 151
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=49.80 E-value=35 Score=36.08 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 191 (447)
.++++++.+++.++|.+|-|||--.+..|..++
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 468899999999999999999999999987775
No 152
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.60 E-value=2.4e+02 Score=26.95 Aligned_cols=125 Identities=8% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC----cCcccCh--hhHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI----IDRSFGF--QTAVEMAQQA 233 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~----tD~s~GF--dTAv~~~~~a 233 (447)
..+.++.+.++++|++++...+- ... ..+-+++.+. +|+||.+ |++++. ...+++. ..+.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~-~~~-~~~i~~~~~~--~iPvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGI-GTL-TEAVQKAIAR--GIPVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCh-HHh-HHHHHHHHHC--CCcEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 45778888899999999986542 111 2222444444 4567665 333321 1122333 3444444444
Q ss_pred HHHHHHhhhhcCCcEEEEEe-------cCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhC
Q 042534 234 ISAAHVEAESAVNGIGLVKL-------MGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKEN 301 (447)
Q Consensus 234 i~~i~~~A~S~~~~v~iVev-------MGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k 301 (447)
+-+ .... +.++.++.- .-|..||........ + ..++-+.+..++.+ .-.+.+++.++++
T Consensus 116 l~~---~~~g-~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~-~-~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 116 LCN---AMGG-KGKIAMLQGALGHTGAQGRAQGFNDVIKKYP-D-IEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HHH---HcCC-CceEEEEECCCCCcchhHHHHHHHHHHHhCC-C-CEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 332 2223 567877741 236677776654321 1 33332333345443 3445666656543
No 153
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=49.34 E-value=2.4e+02 Score=27.72 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=48.4
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
..||++...-..|=.+.++.++-..+. .+|. .+. + .++... ..
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~-~~g~-~~~---------i-------------------------~~~~~~~~~ 103 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIAT-MYKY-NII---------L-------------------------SNSDEDPEK 103 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHH-HcCC-EEE---------E-------------------------EeCCCCHHH
Confidence 468988865556777777888777664 3443 111 0 011111 12
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
..++++.|...++|++++.+-+.+.. +.+.+.+. +++||.+
T Consensus 104 ~~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~--~iPvV~~ 144 (329)
T TIGR01481 104 EVQVLNTLLSKQVDGIIFMGGTITEK----LREEFSRS--PVPVVLA 144 (329)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhc--CCCEEEE
Confidence 34667778899999999987653322 22333333 4667654
No 154
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=48.89 E-value=20 Score=31.13 Aligned_cols=42 Identities=29% Similarity=0.566 Sum_probs=30.2
Q ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHcCCc---ceEeeeccccccccc
Q 042534 171 AFNQVYIIGGDGTMRGAVEIFDEIQRRKIN---VGVVGIPKTVDNDVG 215 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~---i~VVgIPkTIDNDi~ 215 (447)
..+.++++|||||...+.. .+.+.... .++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887642 22222222 678889987799986
No 155
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.41 E-value=2.4e+02 Score=26.64 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=70.9
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~~ 161 (447)
|||+...=.-|=.+.++.++...+. .+|+ ++.- .++... ....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~-~~gy-~v~~----------------------------------~~~~~~~~~~~ 45 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEAD-ARGL-SLVL----------------------------------CATRNRPEREL 45 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHH-HCCC-EEEE----------------------------------EeCCCCHHHHH
Confidence 6777654445777788888887774 4554 2221 111111 1246
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccC--hhhHHHHHHHHHHHHHH
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFG--FQTAVEMAQQAISAAHV 239 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~G--FdTAv~~~~~ai~~i~~ 239 (447)
+.++.+...++|++++.+-+-.... +.+ +.+. +++||.+=.++++. . ..+++ +..|...+++.+-+
T Consensus 46 ~~i~~~~~~~~dgiii~~~~~~~~~---~~~-~~~~--~~pvV~i~~~~~~~-~--~~~V~~d~~~~~~~~~~~L~~--- 113 (269)
T cd06293 46 TYLRWLDTNHVDGLIFVTNRPDDGA---LAK-LINS--YGNIVLVDEDVPGA-K--VPKVFCDNEQGGRLATRHLAR--- 113 (269)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHH---HHH-HHhc--CCCEEEECCCCCCC-C--CCEEEECCHHHHHHHHHHHHH---
Confidence 7888999999999999874322222 222 2223 46677653333321 1 12344 44455555554432
Q ss_pred hhhhcCCcEEEEEe-------cCCccchHHHHH
Q 042534 240 EAESAVNGIGLVKL-------MGRSTGHIALHA 265 (447)
Q Consensus 240 ~A~S~~~~v~iVev-------MGR~sG~lAl~a 265 (447)
.. ++++.++-- .-|..||..+..
T Consensus 114 --~G-~~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 114 --AG-HRRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred --CC-CceEEEEecCcccccHHHHHHHHHHHHH
Confidence 13 667887742 235667766543
No 156
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=48.36 E-value=28 Score=30.01 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+.+++++..++.+++. +.||.|-+.-...|++.+++.| +.++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~g--i~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAG--IIFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCC--CEEECc
Confidence 57999999999998776 5699999999999999998765 457764
No 157
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.15 E-value=39 Score=34.90 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHc-----------------CCcceEeeecccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRR-----------------KINVGVVGIPKTV 210 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~-----------------~~~i~VVgIPkTI 210 (447)
.++++++.+++.+.|.++-|||--.+..|..++-..... +-.+++|.||-|-
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 137 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTA 137 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCC
Confidence 478899999999999999999999999988776543210 1137889999874
No 158
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=48.01 E-value=40 Score=29.61 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+++...+.++|.++++.||+-+.-+. +.++++|.++-+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 455666667999999999999887765 4445678888888887
No 159
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.54 E-value=83 Score=31.27 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcc-cChhhHHHHHHHHHHHHHH
Q 042534 172 FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRS-FGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 172 Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s-~GFdTAv~~~~~ai~~i~~ 239 (447)
-|.|||+ ++.....++.|. +.++|+||++=-| |+|..++|+- +|=|=|.+.++-...-+..
T Consensus 157 Pd~l~Vi---Dp~~e~iAv~EA---~klgIPVvAlvDT-n~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ 218 (252)
T COG0052 157 PDVLFVI---DPRKEKIAVKEA---NKLGIPVVALVDT-NCDPDGVDYVIPGNDDAIRSIALIYWLLAR 218 (252)
T ss_pred CCEEEEe---CCcHhHHHHHHH---HHcCCCEEEEecC-CCCCccCceeecCCChHHHHHHHHHHHHHH
Confidence 7889997 456666667553 4588999999877 7777777763 5666666666554444443
No 160
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=47.49 E-value=33 Score=36.10 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCC---EEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 160 LHQIVDAIQTNAFN---QVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 160 ~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
..++.+.+++.+.+ .++.|||--++..|..++-. ..+ +++.|.||-| =+..+|-+.|--++++.
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~r--gip~I~IPTT---lla~vda~~g~~~~v~~ 163 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHR--GVRLIRIPTT---VLAQNDSGVGVKNGINA 163 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcC--CCCEEEEcCC---CccccCCCccchhheec
Confidence 78899999999998 99999998888888777642 233 4789999999 23455666665555544
No 161
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.89 E-value=38 Score=30.18 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHcCC-CEEEEecCCC
Q 042534 158 FDLHQIVDAIQTNAF-NQVYIIGGDG 182 (447)
Q Consensus 158 ~~~~~iv~~l~~~~I-d~L~vIGGdg 182 (447)
...+++++.|++.++ +..+++||.-
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 457899999999999 8889999984
No 162
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=46.46 E-value=33 Score=35.04 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.++++++.+++ +.|.++-|||--.+..|..++ .. + ++++|.||-|.-+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 36778888888 999999999988888888777 22 2 57899999997543
No 163
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.31 E-value=1.3e+02 Score=29.06 Aligned_cols=67 Identities=9% Similarity=-0.044 Sum_probs=46.0
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
++||++...-..|.....+.++...+. .+|.. +. +. -++....+.
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~-~~gy~-~~---------~~------------------------~~~~~~~~~ 45 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAK-AIGWN-LR---------IL------------------------DGRGSEAGQ 45 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHH-HcCcE-EE---------EE------------------------CCCCCHHHH
Confidence 468888877778899999999998874 44431 11 10 011111234
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDG 182 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdg 182 (447)
.++++.+..+++|++++.+.+.
T Consensus 46 ~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 46 AAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCCH
Confidence 5788999999999999998653
No 164
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=46.29 E-value=19 Score=39.45 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcC---CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 160 LHQIVDAIQTNA---FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 160 ~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
.+++++.+.+.+ -|.++.|||=-++..|..++.-+ .| ++++|.||-|. ++.+|-|+|.-|+++
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~r--Gi~~i~vPTTl---lA~vDss~ggkt~in 320 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MR--GIRYVNCPTSL---LAMVDASTGGKTGIN 320 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-Hc--CCCEEEeCChH---HhhhccccCCceEEE
Confidence 567778888884 89999999988888887776532 23 58899999996 345566666665554
No 165
>PRK05637 anthranilate synthase component II; Provisional
Probab=46.28 E-value=44 Score=31.97 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=36.2
Q ss_pred HHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 165 ~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
+.+++.+.+++|+-||-|+-..+....+.+++..-+++|.|| |+|++.-+..
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577999999999999998875544444322225677776 9999875544
No 166
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.73 E-value=70 Score=31.30 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=64.6
Q ss_pred ccccccccCcCcccChhhHHHHHHHHHHH-HHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcch
Q 042534 208 KTVDNDVGIIDRSFGFQTAVEMAQQAISA-AHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG 286 (447)
Q Consensus 208 kTIDNDi~~tD~s~GFdTAv~~~~~ai~~-i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~ 286 (447)
.|+.-|+.+-....|..-+ + +.+.+.. +.....+.......-++-|..-=-+|++++||.+ +++++.=|...-||.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~-P~iliLDEPta~LD~ 171 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG-PEILLLDEPTAGLDP 171 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC-CCEEEEcCCCCCCCH
Confidence 6888889888888888875 2 2222222 2222222223455668888888899999999998 999999886666653
Q ss_pred --hhhHHHHHHHHHhhCCcEEEEEe
Q 042534 287 --KGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 287 --~~~l~~~i~~r~~~k~~~vIvva 309 (447)
...+++.+++-.++.+..||+++
T Consensus 172 ~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 172 KGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 33455555544344456777664
No 167
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=45.67 E-value=2.8e+02 Score=26.54 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=43.5
Q ss_pred eEEEEccC---CCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 82 RAAIVTCG---GLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 82 kiaIvtsG---G~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
|||++... -.-|-.+.++.++-+.+. .+|+. +.-. ++....
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~-~~gy~-~~i~----------------------------------~~~~~~ 44 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAK-ELGIE-YKYV----------------------------------ESKSDA 44 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHH-HcCCe-EEEE----------------------------------ecCCHH
Confidence 68888876 367999999999999885 45542 2111 011112
Q ss_pred cHHHHHHHHHHcCCCEEEEecC
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGG 180 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGG 180 (447)
+..+.++.|...++|++++.+-
T Consensus 45 ~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 45 DYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEcCc
Confidence 3456788899999999999874
No 168
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.96 E-value=2.7e+02 Score=26.16 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=50.3
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++...=.-|=.+.++.++.+.+. .+|.. +. +.. +.........
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~-~~~~~-~~-~~~--------------------------------~~~~~~~~~~ 46 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAA-ERGYS-TF-VAN--------------------------------TGDNPDAQRR 46 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-HCCCE-EE-EEe--------------------------------CCCCHHHHHH
Confidence 6777755456888888888888774 45542 21 000 0111123457
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
.++.+...++|++++.+-+.... .+ +++.+.+ ++||.+=.
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~~--iPvv~~~~ 86 (265)
T cd06285 47 AIEMLLDRRVDGLILGDARSDDH---FL-DELTRRG--VPFVLVLR 86 (265)
T ss_pred HHHHHHHcCCCEEEEecCCCChH---HH-HHHHHcC--CCEEEEcc
Confidence 78889999999999987554432 22 3344444 55665533
No 169
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=44.41 E-value=47 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHc-CCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC
Q 042534 158 FDLHQIVDAIQTN-AFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI 216 (447)
Q Consensus 158 ~~~~~iv~~l~~~-~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~ 216 (447)
...+++.+.+++. +.|.++-|||--.+..|..++.. + ++++|.||-|.-+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCccc
Confidence 3467777777776 59999999998888888888752 3 57899999997765443
No 170
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=44.28 E-value=38 Score=34.90 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcC---CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 159 DLHQIVDAIQTNA---FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 159 ~~~~iv~~l~~~~---Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
..+++++.+.+++ .|.++.|||--.+..|..++... .+ .+++|.||-|. +..+|-+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~r--gip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FR--GIAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCcEEEecCCc---ccccccCccceEeEe
Confidence 3678888888877 89999999988888888776543 23 57899999993 244566666666555
No 171
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=44.13 E-value=2.1e+02 Score=29.34 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=89.2
Q ss_pred EEEccCCCCccHHH--HHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc----
Q 042534 84 AIVTCGGLCPGLNT--VIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---- 157 (447)
Q Consensus 84 aIvtsGG~~PGlN~--vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---- 157 (447)
-|+.+||+ |=++. .+..++..+.+ . ..+.+++-|.+.... . ...+|++.++.+...|=.++..+-.+
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~-i--~~~~~IRi~tr~~~~-~--P~rit~el~~~L~~~~~~~~~vsh~nh~~E 234 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEE-I--PHLVRLRIGTRLPVV-I--PQRITDELCELLASFELQLMLVTHINHCNE 234 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHh-c--CCccEEEeecCCCcc-C--chhcCHHHHHHHHhcCCcEEEEccCCChHh
Confidence 57888998 55443 47788877743 2 235555555443221 1 23356666666655542322222111
Q ss_pred --ccHHHHHHHHHHcCCCE----EEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHH
Q 042534 158 --FDLHQIVDAIQTNAFNQ----VYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQ 231 (447)
Q Consensus 158 --~~~~~iv~~l~~~~Id~----L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~ 231 (447)
....+.++.|++.|+.. .+.=|=|++.....+|.+.+.+.|+. |=.+..=. -+..+=-|.+-.+.+.
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~-~~~g~~~f~~~~~~~~ 307 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLD-KVQGAKHFLVPDAEAA 307 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcC-CCCCcccccCCHHHHH
Confidence 23567778888888754 34557678877777787776654421 11111100 0111234788888888
Q ss_pred HHHHHHHHhhhhcCCcEEEEEecC
Q 042534 232 QAISAAHVEAESAVNGIGLVKLMG 255 (447)
Q Consensus 232 ~ai~~i~~~A~S~~~~v~iVevMG 255 (447)
+.+..++.-....--.-+++|+.|
T Consensus 308 ~i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 308 QIVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHHhcCCCCcceeEEecCCC
Confidence 888887766554333467777665
No 172
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=44.08 E-value=25 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAV 188 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~ 188 (447)
.+..+.|++++|| |+.||+-|+..|.
T Consensus 13 p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 13 PRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred hHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 4567889999999 7999999966553
No 173
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=43.99 E-value=3.3e+02 Score=26.85 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-.-|-...++.++-+.+. .+|+ ++.-.. +.......
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~~---------------------------------~~~~~~~~ 108 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTD-AHGY-QTMLAH---------------------------------YGYKPEME 108 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHH-HCCC-EEEEec---------------------------------CCCCHHHH
Confidence 468998866566778888888888774 4554 222100 00000112
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh--HHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT--AVEMAQQAISAAH 238 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT--Av~~~~~ai~~i~ 238 (447)
.+.++.+...++|++++.+-+.+-. ..+.+.+. +++||.+- |.+.+..+.++++|- +...++ +.+.
T Consensus 109 ~~~~~~~~~~~vdgiI~~~~~~~~~----~~~~l~~~--~iPvV~~~---~~~~~~~~~~V~~Dn~~~~~~a~---~~L~ 176 (331)
T PRK14987 109 QERLESMLSWNIDGLILTERTHTPR----TLKMIEVA--GIPVVELM---DSQSPCLDIAVGFDNFEAARQMT---TAII 176 (331)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCHH----HHHHHHhC--CCCEEEEe---cCCCCCCCceEEeCcHHHHHHHH---HHHH
Confidence 3567778899999999987543321 22333333 56677541 222222223455442 333333 3333
Q ss_pred HhhhhcCCcEEEE
Q 042534 239 VEAESAVNGIGLV 251 (447)
Q Consensus 239 ~~A~S~~~~v~iV 251 (447)
. .. |+++.++
T Consensus 177 ~--~G-h~~I~~i 186 (331)
T PRK14987 177 A--RG-HRHIAYL 186 (331)
T ss_pred H--CC-CceEEEE
Confidence 2 23 6788888
No 174
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=43.76 E-value=2.4e+02 Score=27.23 Aligned_cols=85 Identities=18% Similarity=0.065 Sum_probs=48.5
Q ss_pred eEEEEccCCC-CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 82 RAAIVTCGGL-CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 82 kiaIvtsGG~-~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
||+|++.-.+ .-|+...++.+++.+.+......++............. . . ++..........+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~--~---~----------~~~~~~~~~~~~~~ 65 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG--E---Q----------EVVRVIVLDNPLDY 65 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC--c---c----------cceeeeecCCchhH
Confidence 6888887665 77999999999999864322223444333322211111 0 0 11111111112356
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 042534 161 HQIVDAIQTNAFNQVYIIGGD 181 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGd 181 (447)
..+.+.+++.+.|.+++--..
T Consensus 66 ~~~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 66 RRAARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHHHhhcCCCEEEEeecc
Confidence 777888899999988875533
No 175
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=43.22 E-value=3.2e+02 Score=26.57 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=51.4
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC-CcccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR-GGFDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR-~~~~~ 160 (447)
+||+|...=.-|-...+++++-+.+. .+|+ ++.- ++.+. .....
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~-~~g~-~v~~---------------------------------~~~~~~d~~~~ 45 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAK-ELGV-DAIY---------------------------------VGPTTADAAGQ 45 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHH-HhCC-eEEE---------------------------------ECCCCCCHHHH
Confidence 47877765567888889999988874 4554 2221 11111 11234
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+.++.+...++|++++.+.+-+ ....+.+++.+. +++||.+
T Consensus 46 ~~~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~--~iPvV~v 87 (298)
T cd06302 46 VQIIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREA--GIKVVTH 87 (298)
T ss_pred HHHHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHC--CCeEEEE
Confidence 56777788889999999876532 222333444444 4556655
No 176
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=43.18 E-value=30 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
.+.+.+.+...+.++++-||+-+.-+. +.++++|.++-|++.|.....+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~~ 134 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASEA 134 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-HH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCHH
Confidence 344444445679999999999887654 4455778888898875554443
No 177
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.14 E-value=1.4e+02 Score=29.98 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHHHcCCCEE
Q 042534 99 IRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQV 175 (447)
Q Consensus 99 Ir~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L 175 (447)
.+.++..+....++++|.-+..-.. + -..+-....+.+...|+++..+.+.. .|+...+..|++.+-+.+
T Consensus 125 ~~~~a~~~~~~~~~~~v~ii~~~~~--~-----g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v 197 (347)
T cd06335 125 APFLVDEAVKRGGFKKVALLLDNTG--W-----GRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAI 197 (347)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCc--h-----hhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEE
Confidence 3455555544444666665532210 0 01111222334455677777665543 578899999999999999
Q ss_pred EEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 176 YIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 176 ~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
++.+... .+..+.+.+++.|+++++++
T Consensus 198 ~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 198 IIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred EEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 8876332 33346677788888766654
No 178
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=43.05 E-value=3.1e+02 Score=27.05 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.0
Q ss_pred CEEEEecCCCcHHHH-HHHHHHHHHcCCcceEeeecc
Q 042534 173 NQVYIIGGDGTMRGA-VEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 173 d~L~vIGGdgS~~~A-~~L~~~~~~~~~~i~VVgIPk 208 (447)
+.+|+.||.+..-.. ..|++++.++|+++.|++-|.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 468888998876653 478999998898888887655
No 179
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=42.86 E-value=48 Score=36.05 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=52.5
Q ss_pred HHHHcCCCEEEEecCCCcHHHHHHH--HHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhh
Q 042534 166 AIQTNAFNQVYIIGGDGTMRGAVEI--FDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAES 243 (447)
Q Consensus 166 ~l~~~~Id~L~vIGGdgS~~~A~~L--~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S 243 (447)
.++++ +|+++|-||.|.--..-+| +++++++ +++..|| |+|++.|+=+.++-+-.+. +|.|
T Consensus 339 ~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yAREn--~iP~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS 401 (533)
T COG0504 339 ELEKL-VDGILVPGGFGYRGVEGKIAAIRYAREN--NIPFLGI-------------CLGMQLAVIEFARNVLGLE-GANS 401 (533)
T ss_pred hhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHhc--CCCEEEE-------------chhHHHHHHHHHHHhcCCc-cCcc
Confidence 34444 9999999999953333343 3444433 4555554 9999999877777554443 4555
Q ss_pred cC----CcEEEEEecCCccchHHHHHhhccC
Q 042534 244 AV----NGIGLVKLMGRSTGHIALHATLSSR 270 (447)
Q Consensus 244 ~~----~~v~iVevMGR~sG~lAl~aaLA~~ 270 (447)
+. -..-||.+|.-..+---+-.++.-|
T Consensus 402 ~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG 432 (533)
T COG0504 402 TEFDPDTKYPVVDLMPEQKDVVDLGGTMRLG 432 (533)
T ss_pred cccCCCCCCceEEeccccccCCcCCceeecc
Confidence 32 1344777777655543344444444
No 180
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=42.34 E-value=1.2e+02 Score=32.47 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=58.7
Q ss_pred eEEEEccCCCCccHH-HHHHHHHHHHHHhcCCeEEEEE-cccccccccCCCCeEECChhhhhchh-----------ccCC
Q 042534 82 RAAIVTCGGLCPGLN-TVIRELVVGLWELYGVRQILGI-QAGYRGFYSTTRNPLVLNPKMVRGWH-----------KLGG 148 (447)
Q Consensus 82 kiaIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~~V~Gi-~~G~~GL~~~~~~~~~L~~~~v~~i~-----------~~GG 148 (447)
-|+|+++ ..|++. +=|.++++.+....+. .|+.+ -.||.|-.... +.......++.+. ....
T Consensus 124 ~I~V~tt--C~~~lIGdDi~~v~~e~~~~~~~-~vi~v~t~gf~g~~~~G--~~~a~~al~~~~~~~~~~~~~~~~~~~~ 198 (456)
T TIGR01283 124 AVFVYST--CVPGLIGDDLEAVCKAAAEKTGI-PVIPVDSEGFYGSKNLG--NKLACDALLKHVIGTREPEPIPVGTTVH 198 (456)
T ss_pred EEEEECC--ChHHHhcCCHHHHHHHHHHHhCC-CEEEEECCCCccchhHH--HHHHHHHHHHHHhccCCcccccccCCCC
Confidence 3566653 344443 3477788777655665 45555 47777732211 0000000011110 0122
Q ss_pred c--cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 149 T--VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 149 t--~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
+ +||.....-|..++.+-|+++||+...++.|+.|+..-..+
T Consensus 199 ~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 242 (456)
T TIGR01283 199 DINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTA 242 (456)
T ss_pred cEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhc
Confidence 2 56644433478899999999999999999999887655443
No 181
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=42.19 E-value=37 Score=35.53 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII 217 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t 217 (447)
.+++++...+.+.+.|.++=|||--++..|..++.. +++++|.||-+=.+|=+.+
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccC
Confidence 357888888888899999999999999999988764 5788999999988887544
No 182
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=41.91 E-value=2.3e+02 Score=31.52 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=62.4
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNA--FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 161 ~~iv~~l~~~~--Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
++++..+++.| ||++++-.|==++.-|..|-+++-..|++ -|+-=|.||| ...++-+|
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe------------------qI~svi~I- 170 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE------------------QIRSVIRI- 170 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH------------------HHHHHHHH-
Confidence 45666666654 99999999999999999999998777765 3556677765 12222222
Q ss_pred HhhhhcCCcEEEEEecCCcc-ch----------HHHHHhhccCCccEEec
Q 042534 239 VEAESAVNGIGLVKLMGRST-GH----------IALHATLSSRDVDCCLI 277 (447)
Q Consensus 239 ~~A~S~~~~v~iVevMGR~s-G~----------lAl~aaLA~~~ad~ilI 277 (447)
|...++-=-++..-|..+ || |+.++.|.++ .|++|+
T Consensus 171 --Aka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~-~NIvl~ 217 (717)
T COG4981 171 --AKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR-DNIVLC 217 (717)
T ss_pred --HhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC-CCEEEE
Confidence 333333333445444444 44 7889999987 787775
No 183
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=41.87 E-value=58 Score=29.70 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCCceEEEEccCCCCc---cHHHHHHHHHHHHHHhcCCeEEEEE
Q 042534 78 PKNTRAAIVTCGGLCP---GLNTVIRELVVGLWELYGVRQILGI 118 (447)
Q Consensus 78 p~~~kiaIvtsGG~~P---GlN~vIr~vv~~~~~~~~~~~V~Gi 118 (447)
.+.++++++.+|+..+ --+.+++.+-..+ ...|. +++|.
T Consensus 76 l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l-~~~G~-~~ig~ 117 (167)
T TIGR01752 76 FTGKTVALFGLGDQEGYSETFCDGMGILYDKI-KARGA-KVVGF 117 (167)
T ss_pred CCCCEEEEEecCCCCcccHHHHHHHHHHHHHH-HHcCC-eEEce
Confidence 3568899999987642 3366777777666 45675 67764
No 184
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=41.66 E-value=1.1e+02 Score=29.09 Aligned_cols=93 Identities=15% Similarity=0.317 Sum_probs=62.1
Q ss_pred EEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCC-------CeEECChhhhhchhccCCccccccCC
Q 042534 84 AIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTR-------NPLVLNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 84 aIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-------~~~~L~~~~v~~i~~~GGt~LGssR~ 156 (447)
+++.+||+-|-.... ..+++ ....++++-.|..=|++... ++=.++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~~--~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLWK--KADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhhc--cCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 367788888855543 22322 22468999999877765320 13336666666666554334444442
Q ss_pred c--ccHHHHHHHHHHcCCCEEEEecCCCc
Q 042534 157 G--FDLHQIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 157 ~--~~~~~iv~~l~~~~Id~L~vIGGdgS 183 (447)
+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 2 47999999999999999999999998
No 185
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=41.58 E-value=1.4e+02 Score=30.67 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHHHcCCCEEE
Q 042534 100 RELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQVY 176 (447)
Q Consensus 100 r~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L~ 176 (447)
+.+++.+.+..+++++.-+...+. +.. +......+.+...|+.+.+..+.. .|+...+..|++.+-|.++
T Consensus 149 ~~~~~~~~~~~~~k~va~i~~d~~--~g~-----~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~ 221 (369)
T PRK15404 149 PTAAKYILEKVKPKRIAVLHDKQQ--YGE-----GLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVY 221 (369)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCc--hhH-----HHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEE
Confidence 344555544446556555543221 111 111223345667788888776543 5889999999999999877
Q ss_pred EecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 177 IIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 177 vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+ +|.+. .. ..+.+.+++.|++.++++.
T Consensus 222 ~-~~~~~-~~-~~~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 222 Y-GGYHP-EM-GQILRQAREAGLKTQFMGP 248 (369)
T ss_pred E-CCCch-HH-HHHHHHHHHCCCCCeEEec
Confidence 5 44443 22 3355777888888776643
No 186
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=41.28 E-value=60 Score=30.46 Aligned_cols=66 Identities=6% Similarity=0.217 Sum_probs=44.3
Q ss_pred EECChhhhhchhccCCccccccCCc-ccHHHHHHHH-HHcCCCEEEEecCCCc-HHHHHHHHHHHHHcCC
Q 042534 133 LVLNPKMVRGWHKLGGTVLETSRGG-FDLHQIVDAI-QTNAFNQVYIIGGDGT-MRGAVEIFDEIQRRKI 199 (447)
Q Consensus 133 ~~L~~~~v~~i~~~GGt~LGssR~~-~~~~~iv~~l-~~~~Id~L~vIGGdgS-~~~A~~L~~~~~~~~~ 199 (447)
+.|..+........|-++.||+++. .-+++++.|+ ..-||..|++.|-+-. +...+.|. .+.+.|+
T Consensus 27 ~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGi 95 (176)
T PF04208_consen 27 CTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGI 95 (176)
T ss_pred EECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCC
Confidence 3344444433444566799999986 5689988887 6678999999998863 55555553 3445554
No 187
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.26 E-value=3.5e+02 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
..+.++.+...++|++++...|... .....+++++. +++||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~--giPvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQK--NIPVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHC--CCCEEEe
Confidence 4577888999999999998876432 12222444444 4567654
No 188
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=41.22 E-value=45 Score=32.95 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=47.8
Q ss_pred ChhhhhchhccCCc--cc-cccCCc--ccHHHHHHHHHHcCCCEEEEecCCCcHH------------HHHHHHHHHHHc-
Q 042534 136 NPKMVRGWHKLGGT--VL-ETSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGTMR------------GAVEIFDEIQRR- 197 (447)
Q Consensus 136 ~~~~v~~i~~~GGt--~L-GssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS~~------------~A~~L~~~~~~~- 197 (447)
+......+.+.+|- +. =|+|.. ..++..+..+.+.||+.+++++||-... .|..|-+.+++.
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 46 TLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred HHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 44445555555543 11 245543 4588899999999999999999986644 377777777664
Q ss_pred --CCcceEeeec
Q 042534 198 --KINVGVVGIP 207 (447)
Q Consensus 198 --~~~i~VVgIP 207 (447)
++.+.+.+.|
T Consensus 126 ~~~~~igva~yP 137 (274)
T cd00537 126 GGGFSIGVAAYP 137 (274)
T ss_pred CCCCccccccCC
Confidence 3556666666
No 189
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.12 E-value=3.1e+02 Score=25.80 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=67.6
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
|||+...-..|-.+.+++++-..+. .+|+ ++.-+ . +........+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~--------~-------------------------~~~~~~~~~~ 46 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALA-QYGY-TVLLC--------N-------------------------TYRGGVSEAD 46 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHH-HCCC-EEEEE--------e-------------------------CCCChHHHHH
Confidence 6888877777888888999888774 4554 22210 0 0111123457
Q ss_pred HHHHHHHcCCCEEEEecCCCcHH-HHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMR-GAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEA 241 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~-~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A 241 (447)
+++.|...++|++++.+..-... ......+++.++ +++||.+=...++.....--+.=+..+...+++.+-.
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~--~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~----- 119 (273)
T cd06292 47 YVEDLLARGVRGVVFISSLHADTHADHSHYERLAER--GLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVA----- 119 (273)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhC--CCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHH-----
Confidence 88999999999999998542221 111122333344 4667765333332111111122233444444443322
Q ss_pred hhcCCcEEEEE
Q 042534 242 ESAVNGIGLVK 252 (447)
Q Consensus 242 ~S~~~~v~iVe 252 (447)
.. |+++.++-
T Consensus 120 ~g-~~~i~~i~ 129 (273)
T cd06292 120 LG-HRRIGFAS 129 (273)
T ss_pred CC-CceEEEEe
Confidence 13 56787773
No 190
>PTZ00063 histone deacetylase; Provisional
Probab=40.95 E-value=1.4e+02 Score=32.02 Aligned_cols=99 Identities=11% Similarity=0.161 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHHHHcCCCE
Q 042534 95 LNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQ 174 (447)
Q Consensus 95 lN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~ 174 (447)
.-.+.+.++..+.+.+. .+++-+.-|+.++..+...-..||. ....++++.++++++-.
T Consensus 234 Y~~~f~~ii~~~i~~f~-Pd~IvvqaG~D~~~~DpLg~l~Lt~--------------------~g~~~~~~~~~~~~~pi 292 (436)
T PTZ00063 234 FVDLFKPVISKCVEVYR-PGAIVLQCGADSLTGDRLGRFNLTI--------------------KGHAACVEFVRSLNIPL 292 (436)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEECCccccCCCCCCCcccCH--------------------HHHHHHHHHHHhcCCCE
Confidence 33456666655555666 5888999999999887621222222 12456788889999999
Q ss_pred EEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCc
Q 042534 175 VYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDR 219 (447)
Q Consensus 175 L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~ 219 (447)
+++.||-=+.+...+-..+.- . .+++.|..|+|+||..++
T Consensus 293 l~l~gGGY~~~~lar~w~~~t----~-~~~~~~~~~~~~iP~~~~ 332 (436)
T PTZ00063 293 LVLGGGGYTIRNVARCWAYET----G-VILNKHDEMSDQISLNDY 332 (436)
T ss_pred EEEeCccCCchHHHHHHHHHH----H-HHhCCcccCCccCCCCcc
Confidence 998888777655433322211 1 256788789999996653
No 191
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=40.86 E-value=44 Score=31.21 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 165 ~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
+.+++++.|++|+-||.|+-..+..-.+.+++...+++|.|| |+|++--+..
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445678899999999999975432211222221235677776 8998865443
No 192
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=40.79 E-value=2.8e+02 Score=25.07 Aligned_cols=83 Identities=8% Similarity=0.046 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc---ccCcCcccChhhHHHHHHHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND---VGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND---i~~tD~s~GFdTAv~~~~~ai~ 235 (447)
+..++++.+.+.++++++..+.+.+... +.+.+.+. ++++|.+=.+.+.. -...-..+.+..+.+.+.+.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~--~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAA--GIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHc--CCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4567777788889999988877765443 33334343 56787775554321 1112234444555555555444
Q ss_pred HHHHhhhhcCCcEEEEE
Q 042534 236 AAHVEAESAVNGIGLVK 252 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVe 252 (447)
... ++++.++=
T Consensus 121 ~~~------~~~i~~i~ 131 (269)
T cd01391 121 EKG------WKRVALIY 131 (269)
T ss_pred HhC------CceEEEEe
Confidence 332 56777774
No 193
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.11 E-value=3.5e+02 Score=26.07 Aligned_cols=86 Identities=7% Similarity=0.033 Sum_probs=52.4
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
.||++...-.-|-...++.++...+. .+|+. +.- ..+........
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~-~~g~~-~~~---------------------------------~~~~~~~~~~~ 45 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALK-ELGAE-VIV---------------------------------QNANGDPAKQI 45 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHH-HcCCE-EEE---------------------------------ECCCCCHHHHH
Confidence 37788866677888888888887774 45542 211 00111112345
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
++++.+.+.++|++++.+.+.+.. ..+.+++.+. +++||.+
T Consensus 46 ~~i~~~~~~~vdgiii~~~~~~~~--~~~l~~l~~~--~ipvV~~ 86 (288)
T cd01538 46 SQIENMIAKGVDVLVIAPVDGEAL--ASAVEKAADA--GIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCCEEEEecCChhhH--HHHHHHHHHC--CCCEEEE
Confidence 778888899999999988765421 2233444444 5677754
No 194
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.61 E-value=26 Score=36.37 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=22.3
Q ss_pred EEecCCccccccCCCCceEEEEccCCCCccHH
Q 042534 65 YHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLN 96 (447)
Q Consensus 65 ~~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN 96 (447)
|.+.=|..-+ -+-++.|||+||+||..|--|
T Consensus 213 fd~v~p~p~v-KdLs~akIALVTtGGivPkgn 243 (349)
T PF07355_consen 213 FDRVPPAPPV-KDLSKAKIALVTTGGIVPKGN 243 (349)
T ss_pred CCCCCCCCCC-CcHHHCEEEEEeccCcccCCC
Confidence 5554443333 245678999999999999988
No 195
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=38.55 E-value=1.7e+02 Score=28.71 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=59.5
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhh-hchhccCCccccccCCc---ccHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMV-RGWHKLGGTVLETSRGG---FDLHQIVDAIQ 168 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v-~~i~~~GGt~LGssR~~---~~~~~iv~~l~ 168 (447)
|.-..-.+.++..+.+.+++++|.-+..-+ . +-.-..+.+ +.+...|.++..+-... .|+...+..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~ 187 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKT------A--YGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIK 187 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCc------c--hhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHH
Confidence 344455666666655556666665543221 1 111111222 23334577777765543 46889999999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
+.+.+.+++.| .+. .+..+.+.+++.|+...+++
T Consensus 188 ~~~~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 188 AANPDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred hcCCCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 99999887655 332 33446677788887766655
No 196
>CHL00101 trpG anthranilate synthase component 2
Probab=38.55 E-value=45 Score=31.15 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=30.3
Q ss_pred HHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 166 AIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 166 ~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
.+++.+.|+||+-||.|+-.......+-++....+++|.|| |+|++--+.
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI-------------ClG~Qlla~ 87 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV-------------CLGHQSIGY 87 (190)
T ss_pred HHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE-------------chhHHHHHH
Confidence 34567899999999999876532111111111234556665 999886444
No 197
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=38.35 E-value=50 Score=35.09 Aligned_cols=50 Identities=32% Similarity=0.511 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDN 212 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDN 212 (447)
.++.++.+.... |.++|.|||||....- .--+++|+-..+|--+|.--||
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccch
Confidence 456666666555 9999999999987643 2334556656667667765554
No 198
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=38.33 E-value=58 Score=37.85 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 191 (447)
++++++.+++.++|.+|-|||--.+..|..++
T Consensus 528 v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 528 VRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 68889999999999999999999999998775
No 199
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.16 E-value=3.4e+02 Score=25.37 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~ 239 (447)
..++.+.+...++|++++...+..... +.+.+.+. +++||.+=..++.+ . ..++|+|- .+.+..+.+.+..
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~~---~~~~~~~~--~ipvv~i~~~~~~~--~-~~~V~~d~-~~~g~~a~~~l~~ 115 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNPE---LLDLLDEA--GVPYVRIAPGTPDP--D-SPCVRIDD-RAAAREMTRHLID 115 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccH---HHHHHHhc--CCCEEEEecCCCCC--C-CCeEEecc-HHHHHHHHHHHHH
Confidence 567788888999999999988743222 22333333 46677664443221 1 12344432 2222333333332
Q ss_pred hhhhcCCcEEEE
Q 042534 240 EAESAVNGIGLV 251 (447)
Q Consensus 240 ~A~S~~~~v~iV 251 (447)
. . ++++.++
T Consensus 116 ~--g-~~~i~~i 124 (270)
T cd01545 116 L--G-HRRIAFI 124 (270)
T ss_pred C--C-CceEEEE
Confidence 2 3 5678877
No 200
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.15 E-value=1.7e+02 Score=25.96 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG--- 157 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~--- 157 (447)
.|+-+-+.|||. ++.=..++..+.+..|+ +|+- .+. . .-.++.++.....+..+++=|-..
T Consensus 3 ~~v~~a~~g~D~---Hd~g~~iv~~~l~~~Gf-eVi~---------lg~--~-~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 3 PRILVAKMGQDG---HDRGAKVIATAYADLGF-DVDV---------GPL--F-QTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CEEEEEeeCCCc---cHHHHHHHHHHHHhCCc-EEEE---------CCC--C-CCHHHHHHHHHHcCCCEEEEcCchhhh
Confidence 567777788753 55555566555555554 3331 111 1 011234555555555554433321
Q ss_pred -ccHHHHHHHHHHcCC-CEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHH
Q 042534 158 -FDLHQIVDAIQTNAF-NQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 158 -~~~~~iv~~l~~~~I-d~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~ 235 (447)
....++++.|++.+. +..+++||.=.-... +++++. +.|..|+=.|-+..+.+++.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~------------------Gvd~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDF----DELKEM------------------GVAEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHC------------------CCCEEECCCCCHHHHHHHHH
Confidence 235666777777666 456666665432222 222333 34666777776777766665
Q ss_pred H
Q 042534 236 A 236 (447)
Q Consensus 236 ~ 236 (447)
.
T Consensus 125 ~ 125 (132)
T TIGR00640 125 K 125 (132)
T ss_pred H
Confidence 5
No 201
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=37.98 E-value=3.4e+02 Score=25.29 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=48.7
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccC-CcccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSR-GGFDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR-~~~~~~ 161 (447)
||+|..--..|-.+.+++++-+.+. .+|+ .+. +.++. ...+..
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~-~~g~-~v~----------------------------------~~~~~~~~~~~~ 45 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAK-ELGY-ELT----------------------------------VLDAQNDAAKQL 45 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHH-HcCc-eEE----------------------------------ecCCCCCHHHHH
Confidence 6777766678888899999888875 3343 121 11111 112345
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.++.+.+.++|++++.+ ..+-.....| +++.+. ++++|.+
T Consensus 46 ~~~~~~~~~~~dgii~~~-~~~~~~~~~l-~~l~~~--~ipvv~~ 86 (268)
T cd06323 46 NDIEDLITRGVDAIIINP-TDSDAVVPAV-KAANEA--GIPVFTI 86 (268)
T ss_pred HHHHHHHHcCCCEEEEcC-CChHHHHHHH-HHHHHC--CCcEEEE
Confidence 677778888999999864 3332211223 333333 5667766
No 202
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.16 E-value=2e+02 Score=28.55 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
..++.++.+++.|+|++++. |=.+..+..+.+.+++.|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 36899999999999999995 77888888899999998887655556655
No 203
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=37.15 E-value=65 Score=32.90 Aligned_cols=179 Identities=21% Similarity=0.274 Sum_probs=84.2
Q ss_pred cCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCc-ccccc
Q 042534 76 FEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT-VLETS 154 (447)
Q Consensus 76 f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt-~LGss 154 (447)
+.|+..=+||-..||.-| ...+..+..+. ..|.+-|-|.+. +++++ ++-++ ....-|. +.=..
T Consensus 31 ~~~~~liiGiA~~GG~lp---~~w~~~i~~Ai-~~Gl~IvsGLH~----~L~dd-------pel~~-~A~~~g~~i~DvR 94 (301)
T PF07755_consen 31 AGADTLIIGIAPAGGRLP---PSWRPVILEAI-EAGLDIVSGLHD----FLSDD-------PELAA-AAKKNGVRIIDVR 94 (301)
T ss_dssp CT-SEEEE---STTHCCH---CCHHHHHHHHH-HTT-EEEE-SSS-----HCCH-------HHHHC-CHHCCT--EEETT
T ss_pred cCCCEEEEecCcCCCcCC---HHHHHHHHHHH-HcCCCEEecChh----hhccC-------HHHHH-HHHHcCCeEeecc
Confidence 455667799999999888 55666666665 467643333332 33332 22222 2222233 32222
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEecCCCc---HHHHHHHHHHHHHcCCcceEeeeccc----ccccccCcCcccChhhHH
Q 042534 155 RGGFDLHQIVDAIQTNAFNQVYIIGGDGT---MRGAVEIFDEIQRRKINVGVVGIPKT----VDNDVGIIDRSFGFQTAV 227 (447)
Q Consensus 155 R~~~~~~~iv~~l~~~~Id~L~vIGGdgS---~~~A~~L~~~~~~~~~~i~VVgIPkT----IDNDi~~tD~s~GFdTAv 227 (447)
+-..+..-.--..++.+-.-+.++|=|-+ |.++..|.++++++|++..+++==-| -+..++ +| ++-.
T Consensus 95 ~p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~-iD-av~~---- 168 (301)
T PF07755_consen 95 KPPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVP-ID-AVPS---- 168 (301)
T ss_dssp S--SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC---GG-GSBG----
T ss_pred CCCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCee-cc-chhh----
Confidence 21112211111223456777888998855 89999999999999998887753222 111111 11 2222
Q ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEecCC--ccchHHHHHhhc-cCCccEEec
Q 042534 228 EMAQQAISAAHVEAESAVNGIGLVKLMGR--STGHIALHATLS-SRDVDCCLI 277 (447)
Q Consensus 228 ~~~~~ai~~i~~~A~S~~~~v~iVevMGR--~sG~lAl~aaLA-~~~ad~ilI 277 (447)
.+++-++..+-.++.. .+.|-|||=.|- |-+|-....+|- ...+|.+++
T Consensus 169 DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL 220 (301)
T PF07755_consen 169 DFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVL 220 (301)
T ss_dssp GGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEE
T ss_pred hhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEE
Confidence 2355566666667765 458999998884 333333222222 224775444
No 204
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.06 E-value=1.5e+02 Score=31.82 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=59.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
.+||||||= --+|||-|...+..++..-+|+-+.-=.+| + . ....+
T Consensus 136 ~~IGVITS~-----tgAairDIl~~~~rR~P~~~viv~pt~VQG----~-------------------~------A~~eI 181 (440)
T COG1570 136 KKIGVITSP-----TGAALRDILHTLSRRFPSVEVIVYPTLVQG----E-------------------G------AAEEI 181 (440)
T ss_pred CeEEEEcCC-----chHHHHHHHHHHHhhCCCCeEEEEeccccC----C-------------------C------cHHHH
Confidence 689999962 126899999888877774455533211111 1 0 00234
Q ss_pred HHHHHHHHHcC-CCEEEEecCCCcHHHHHHHHHHHHHc---CCcceEee
Q 042534 161 HQIVDAIQTNA-FNQVYIIGGDGTMRGAVEIFDEIQRR---KINVGVVG 205 (447)
Q Consensus 161 ~~iv~~l~~~~-Id~L~vIGGdgS~~~A~~L~~~~~~~---~~~i~VVg 205 (447)
-++++.+.+++ +|.|||.=|-||...-..+.+|.-.| ..+|+||.
T Consensus 182 v~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 182 VEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 45555556666 99999999999999988888775544 35677763
No 205
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=36.79 E-value=10 Score=37.68 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCCC---EEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHH
Q 042534 159 DLHQIVDAIQTNAFN---QVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEM 229 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id---~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~ 229 (447)
.++++.+.|.+.+++ .|+.|||--...-+--.+.-. .| +|+.|-||-|+ +..+|-|+|--||+|.
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y-~R--Gi~~i~vPTTL---La~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY-MR--GIPFIQVPTTL---LAQVDSSIGGKTGVNF 81 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB-TT----EEEEEE-SH---HHHHTTTSSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-cc--CCceEeccccH---HHHHhcccCCCeeeeC
Confidence 378999999999995 999999977666655444332 23 58899999997 4566788888887775
No 206
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.76 E-value=1.9e+02 Score=29.06 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..||||||| -...|+.++++.+-+ ++...+++=+.==.+| + -...+
T Consensus 14 p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~vQG----~-------------------------~A~~~ 59 (319)
T PF02601_consen 14 PKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASVQG----E-------------------------GAAAS 59 (319)
T ss_pred CCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccccc----c-------------------------chHHH
Confidence 478999997 456777777776543 3333344422211111 0 00012
Q ss_pred HHHHHHHHHHc----CCCEEEEecCCCcHHHHHHHHHHHHHc---CCcceEe-eecccccc
Q 042534 160 LHQIVDAIQTN----AFNQVYIIGGDGTMRGAVEIFDEIQRR---KINVGVV-GIPKTVDN 212 (447)
Q Consensus 160 ~~~iv~~l~~~----~Id~L~vIGGdgS~~~A~~L~~~~~~~---~~~i~VV-gIPkTIDN 212 (447)
+-++++.+.+. .+|.++++=|-||...-..+.+|.-.+ .++++|| ||=-.+|.
T Consensus 60 I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 60 IVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF 120 (319)
T ss_pred HHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc
Confidence 33344444444 399999999999988876654443222 2455555 45444443
No 207
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=36.70 E-value=1.2e+02 Score=22.89 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
...+++++..++.|++.+.+-= -+++.+...+.+.+++.|+++ +.|+-.++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 3588999999999999876654 448888888888888777653 66665544
No 208
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=36.10 E-value=56 Score=32.99 Aligned_cols=53 Identities=8% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV 214 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi 214 (447)
+++.+..|-+ .+|.++||||--|- ...+|++-+++.+.+.-.|-=|.=||.+.
T Consensus 199 RQ~a~~~La~-~vD~miVIGg~~Ss-NT~kL~eia~~~~~~t~~Ie~~~el~~~~ 251 (281)
T PF02401_consen 199 RQEAARELAK-EVDAMIVIGGKNSS-NTRKLAEIAKEHGKPTYHIETADELDPEW 251 (281)
T ss_dssp HHHHHHHHHC-CSSEEEEES-TT-H-HHHHHHHHHHHCTTCEEEESSGGG--HHH
T ss_pred HHHHHHHHHh-hCCEEEEecCCCCc-cHHHHHHHHHHhCCCEEEeCCccccCHhH
Confidence 5666666644 69999999999994 45679899888876655565566565433
No 209
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=36.10 E-value=3.6e+02 Score=25.09 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=67.8
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
||++..+-.-|.....++++-+.+. .+|+. +.-+.. .....+..+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~~~~---------------------------------~~~~~~~~~ 46 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLE-AAGYQ-LLLGNT---------------------------------GYSPEREEE 46 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHH-HcCCE-EEEecC---------------------------------CCCchhHHH
Confidence 6788877778889999999988774 45542 221110 011123457
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAE 242 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~ 242 (447)
+++.|...++|++++.+-+.+. .+ .+.+.+. +++||.+=.+.++. ...++++|- .+.+..+.+.+.. .
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~~-~~---~~~~~~~--~ipvv~~~~~~~~~---~~~~v~~d~-~~~~~~~~~~l~~--~ 114 (268)
T cd01575 47 LLRTLLSRRPAGLILTGLEHTE-RT---RQLLRAA--GIPVVEIMDLPPDP---IDMAVGFSH-AEAGRAMARHLLA--R 114 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCCH-HH---HHHHHhc--CCCEEEEecCCCCC---CCCeEEeCc-HHHHHHHHHHHHH--C
Confidence 8888899999999999987652 22 1223333 56777762221111 123455542 1222233333332 2
Q ss_pred hcCCcEEEEE
Q 042534 243 SAVNGIGLVK 252 (447)
Q Consensus 243 S~~~~v~iVe 252 (447)
. ++++.++-
T Consensus 115 g-~~~i~~i~ 123 (268)
T cd01575 115 G-YRRIGFLG 123 (268)
T ss_pred C-CCcEEEec
Confidence 3 56787764
No 210
>PRK04155 chaperone protein HchA; Provisional
Probab=36.01 E-value=4.2e+02 Score=26.74 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=27.5
Q ss_pred cHHHHHHHHH--HcCCCEEEEecCCCcHHH------HHHHHHHHHHcCC
Q 042534 159 DLHQIVDAIQ--TNAFNQVYIIGGDGTMRG------AVEIFDEIQRRKI 199 (447)
Q Consensus 159 ~~~~iv~~l~--~~~Id~L~vIGGdgS~~~------A~~L~~~~~~~~~ 199 (447)
.++++++... ....|+||+-||-|.+.. ..+|.+++.+.+.
T Consensus 133 ~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 133 KLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred eHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 3566665555 568999999999988654 3455555555553
No 211
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=35.95 E-value=1.2e+02 Score=26.29 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=46.0
Q ss_pred ChhhhhchhccCCccccccC---C-cc-cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 136 NPKMVRGWHKLGGTVLETSR---G-GF-DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 136 ~~~~v~~i~~~GGt~LGssR---~-~~-~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
...++..|..-|--+|-|.- . .. .+.+.++.|.+.++.+|.+--|..--.--..+.+.+.+. +++++-+|.
T Consensus 32 e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~--~lPli~ip~ 107 (123)
T PF07905_consen 32 EAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADEL--GLPLIEIPW 107 (123)
T ss_pred ecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHc--CCCEEEeCC
Confidence 33467777555555564432 2 22 378999999999999999955532223334555666555 567999987
No 212
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.74 E-value=1.7e+02 Score=28.61 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=41.3
Q ss_pred hccCCccccccCC---cccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 144 HKLGGTVLETSRG---GFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 144 ~~~GGt~LGssR~---~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
...|++++.+... ..|+...+..+++.+.|.+++.+..+ .+..+.+++.+.|+++++++.
T Consensus 161 ~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 161 KKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYT---EVGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchh---hHHHHHHHHHHcCCCCcEEec
Confidence 3457777766443 24788888999999999887776554 334455777778877666653
No 213
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=35.52 E-value=65 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=39.3
Q ss_pred ccCCc--ccHHHHHHHHHHcCCCEEEEecCCCcH----------HHHHHHHHHHHHc--CCcceEeeecc
Q 042534 153 TSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGTM----------RGAVEIFDEIQRR--KINVGVVGIPK 208 (447)
Q Consensus 153 ssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS~----------~~A~~L~~~~~~~--~~~i~VVgIPk 208 (447)
|+|.. ..++..+..+.+.||+.+++++||-.- ..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 44543 357788888999999999999999762 3466666666554 35666666664
No 214
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.11 E-value=72 Score=29.48 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=34.6
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEecCCC-cHHHHHHHHHHHHHcCCcceEeeecccc
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIGGDG-TMRGAVEIFDEIQRRKINVGVVGIPKTV 210 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIGGdg-S~~~A~~L~~~~~~~~~~i~VVgIPkTI 210 (447)
+--|...++.+++++.++.+++.+|.+.|-. .+.+ .++- ....+|||||-..
T Consensus 34 SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg--vva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 34 SAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG--MVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred CcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH--HHHh-----ccCCCEEEecCCc
Confidence 3346666788999999999998777765542 2222 2322 2478999999753
No 215
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=34.93 E-value=2.7e+02 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=24.9
Q ss_pred hccCCccccccCCcccHHHHHHHHHH--cCCCEEEEecCCCc
Q 042534 144 HKLGGTVLETSRGGFDLHQIVDAIQT--NAFNQVYIIGGDGT 183 (447)
Q Consensus 144 ~~~GGt~LGssR~~~~~~~iv~~l~~--~~Id~L~vIGGdgS 183 (447)
.+.|||.|.+.. .++++++.+.+ .+...++|.+|-+.
T Consensus 4 iK~GGs~l~~~~---~~~~~~~~i~~l~~g~~vvvV~Sg~~~ 42 (227)
T cd04234 4 QKFGGTSVASAE---RIKRVADIIKAYEKGNRVVVVVSAMGG 42 (227)
T ss_pred EEECccccCCHH---HHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 467899887542 34555555554 68999999976544
No 216
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.92 E-value=2.6e+02 Score=29.36 Aligned_cols=106 Identities=10% Similarity=0.024 Sum_probs=58.3
Q ss_pred eEEEEccCCCCccHH-HHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchh-------ccCCc--cc
Q 042534 82 RAAIVTCGGLCPGLN-TVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWH-------KLGGT--VL 151 (447)
Q Consensus 82 kiaIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~-------~~GGt--~L 151 (447)
-|+|+++ ..|++. +=|.++++.+..+++..-+.--..||+|=.... +...-...++.+. ....+ +|
T Consensus 89 ~i~v~~t--C~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G--~~~a~~~l~~~l~~~~~~~~~~~~~VNii 164 (410)
T cd01968 89 AVFVYST--CVVALIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLG--NKLACEALLDHVIGTEEPEPLTPYDINLI 164 (410)
T ss_pred EEEEECC--CchhhhccCHHHHHHHHHHhhCCCEEEEECCCcccChhHH--HHHHHHHHHHHhcCCCCcccCCCCcEEEE
Confidence 3566553 344443 347788887766666533333347777621111 0000000011110 01233 55
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 191 (447)
|.....-|.+++.+-|++.|++...++.|+.|+..-..+.
T Consensus 165 g~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~ 204 (410)
T cd01968 165 GEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAH 204 (410)
T ss_pred CCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhh
Confidence 6444345789999999999999998999988876644443
No 217
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=34.84 E-value=45 Score=31.05 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 165 ~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
+.+++++.|++|+-||-++-.......+.+++...+++|.|| |+|++.-
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qll 85 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQAL 85 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHH
Confidence 335678999999999999865442222222222235667776 8888763
No 218
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=34.82 E-value=57 Score=24.76 Aligned_cols=50 Identities=4% Similarity=0.056 Sum_probs=35.4
Q ss_pred ccccCCcccHHHHHHHHHHcCCCE------------EEEecCCCcHHHHHHHHHHHH-HcCCc
Q 042534 151 LETSRGGFDLHQIVDAIQTNAFNQ------------VYIIGGDGTMRGAVEIFDEIQ-RRKIN 200 (447)
Q Consensus 151 LGssR~~~~~~~iv~~l~~~~Id~------------L~vIGGdgS~~~A~~L~~~~~-~~~~~ 200 (447)
+|+-+...+.++.++.|++.+.+. -+.+|...|...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 556565566788899999998884 678899899999988888877 55544
No 219
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=34.81 E-value=81 Score=31.28 Aligned_cols=107 Identities=20% Similarity=0.312 Sum_probs=63.8
Q ss_pred eEEEEc-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccc-cccCCCCeEECChhhhhchhccCCccccccCCc-c
Q 042534 82 RAAIVT-CGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRG-FYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-F 158 (447)
Q Consensus 82 kiaIvt-sGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~G-L~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~ 158 (447)
||+|+| |+-+-| ....+.+++ .++-+.-=+.| -+.+. ++++++.+-......+.+-.||--. .
T Consensus 1 Ki~IitDS~~dl~----------~~~~~~~~i-~vvPl~i~~~~~~y~D~---~~i~~~efy~~l~~~~~~p~TS~ps~~ 66 (280)
T PF02645_consen 1 KIAIITDSTSDLP----------PELAEEYGI-YVVPLNIIIDGKEYRDG---VDISPEEFYEKLRESGEIPKTSQPSPG 66 (280)
T ss_dssp -EEEEEEGGG-------------HHHHHHTTE-EEE--EEEETTEEEETT---TTSCHHHHHHHHHHTTSEEEEE---HH
T ss_pred CEEEEECCCCCCC----------HHHHHhCCe-EEEeEEEecCCeEEecC---CCCCHHHHHHHHHhcCCCceecCCCHH
Confidence 688888 544433 222245675 45444322223 12223 3688888888776677777777643 4
Q ss_pred cHHHHHHHHHHcCCCEEEEe----cCCCcHHHHHHHHHHHHHcCCcceEe
Q 042534 159 DLHQIVDAIQTNAFNQVYII----GGDGTMRGAVEIFDEIQRRKINVGVV 204 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vI----GGdgS~~~A~~L~~~~~~~~~~i~VV 204 (447)
++.++.+.+.+.+-|.+++| |=-||+..|...++.+ .+.+|.|+
T Consensus 67 ~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 67 EFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp HHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 67888888888999988887 5667888888887766 33455554
No 220
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=34.36 E-value=91 Score=26.95 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQ 232 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ 232 (447)
-+++++.|.+ .+++.|||-+-..+++++..+..+.++.-++-.|+ +|++..+..-.|+-++-+....
T Consensus 42 ~~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~--~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 42 APEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK--DNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred CHHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec--CCceEEEEEEeCCCCHHHHHHH
Confidence 3677777764 47999999998889999998888888876666677 4777777788898887655543
No 221
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.21 E-value=4e+02 Score=25.00 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=67.6
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~ 160 (447)
+||++...-.-|=....+.++-+.+. .+|+ ++.-+ ++... ...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~~~----------------------------------~~~~~~~~~ 44 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAE-ALGG-DLRVY----------------------------------DAGGDDAKQ 44 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHH-HcCC-EEEEE----------------------------------CCCCCHHHH
Confidence 57888766667777888888877774 4554 22211 11111 123
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc-CcccChhhHHHHHHHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII-DRSFGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t-D~s~GFdTAv~~~~~ai~~i~~ 239 (447)
.+.++.+...++|++++..++.+.. ..+.+++.++ +++||.+ |++.+.. -.+++.|- .+.+..+.+.+..
T Consensus 45 ~~~l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~--~ipvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~ 115 (273)
T cd06305 45 ADQIDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDA--GIPVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVK 115 (273)
T ss_pred HHHHHHHHHcCCCEEEEecCChhhh--HHHHHHHHHc--CCCEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHH
Confidence 4667777778999999998764321 1222334444 4556655 4333211 12455543 2333334444444
Q ss_pred hhhhcCCcEEEEE
Q 042534 240 EAESAVNGIGLVK 252 (447)
Q Consensus 240 ~A~S~~~~v~iVe 252 (447)
.... +.+|.++-
T Consensus 116 ~~~g-~~~i~~i~ 127 (273)
T cd06305 116 DLGG-KGNVGYVN 127 (273)
T ss_pred HhCC-CCCEEEEE
Confidence 3334 56788775
No 222
>PRK04011 peptide chain release factor 1; Provisional
Probab=33.98 E-value=1.6e+02 Score=31.32 Aligned_cols=107 Identities=18% Similarity=0.334 Sum_probs=53.3
Q ss_pred HHHHHHHHHH-------cCCCEEEEecCCCcHHHHH----HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 160 LHQIVDAIQT-------NAFNQVYIIGGDGTMRGAV----EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 160 ~~~iv~~l~~-------~~Id~L~vIGGdgS~~~A~----~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
++++.+.+.+ .++++| +|||.|-.+..- .|.+++.+ .|+.+.. .... .--|+.-+++
T Consensus 198 ~k~Vae~~~~~f~~~~~~~v~~I-vlaGpg~~K~~f~~~~~L~~~l~~-----~vv~~~~-----~s~~-~~~Gl~E~l~ 265 (411)
T PRK04011 198 YKRVGEKANEAFLPLLEGKLKGI-LIGGPGPTKEEFLEGDYLHYELKK-----KILGLFD-----VSYT-GESGLRELVD 265 (411)
T ss_pred HHHHHHHHHHHHhhhccccccEE-EEECChhHHHHHhhhhhhhHHHHh-----heEEEEe-----cCCC-CccCHHHHHH
Confidence 4566665533 477765 457777655421 34444332 2443221 1111 1225555555
Q ss_pred HHHHHHHHHHHhhhh-cCCcEEEEEecCCcc-----chHHHHHhhccCCccEEecCCC
Q 042534 229 MAQQAISAAHVEAES-AVNGIGLVKLMGRST-----GHIALHATLSSRDVDCCLIPEM 280 (447)
Q Consensus 229 ~~~~ai~~i~~~A~S-~~~~v~iVevMGR~s-----G~lAl~aaLA~~~ad~ilIPE~ 280 (447)
.+.+.+.+....-.. .-.+ |.+.++++. |.=....||..|.++-.||+|.
T Consensus 266 ~~~~~L~~~k~~~e~~lle~--f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~ 321 (411)
T PRK04011 266 KASDLLKEQELVKEKKLMEE--FFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISED 321 (411)
T ss_pred HHHHHHHHhHHHHHHHHHHH--HHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEecc
Confidence 544444443321111 0011 234455554 5556678888888999999874
No 223
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.87 E-value=1.6e+02 Score=25.36 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=26.8
Q ss_pred hhhchhccCCccccccCCc----ccHHHHHHHHHHcCC-CEEEEecCCCc
Q 042534 139 MVRGWHKLGGTVLETSRGG----FDLHQIVDAIQTNAF-NQVYIIGGDGT 183 (447)
Q Consensus 139 ~v~~i~~~GGt~LGssR~~----~~~~~iv~~l~~~~I-d~L~vIGGdgS 183 (447)
.++.+...+-.+++-|-.. ...+++++.|++.+. +..+++||...
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3455555555544443322 245777777877766 66777887755
No 224
>PRK05261 putative phosphoketolase; Provisional
Probab=33.71 E-value=4.8e+02 Score=30.33 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=34.3
Q ss_pred cCCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCe--EEEEEccccccccc
Q 042534 76 FEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVR--QILGIQAGYRGFYS 127 (447)
Q Consensus 76 f~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~--~V~Gi~~G~~GL~~ 127 (447)
..|+.+|--.+==-|-|||+|-+-..+-+ +..+|+.+ =|.|-=+|-.+++.
T Consensus 39 l~~~~~K~r~~GHwGt~pgln~vyahln~-li~~~~~~~~~V~g~GHg~p~~~a 91 (785)
T PRK05261 39 LKPEHVKPRLLGHWGTTPGLNFIYAHLNR-LIRKYDLNMIYITGPGHGGPAMVA 91 (785)
T ss_pred CCHHHCCcccCCCCCCcHHHHHHHHHHHH-HHhhcCCceEEEeCCCccHHHHHH
Confidence 45566676667778999999988666665 44567654 34455577777765
No 225
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=33.60 E-value=3.3e+02 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEe-cCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 158 FDLHQIVDAIQTNAFNQVYII-GGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
+.++++.-.+- |+++++ ||-||+..+..... ++.+|+.+|
T Consensus 82 ~~Rk~~m~~~s----da~IvlpGG~GTL~E~~~a~~------~~kpv~~l~ 122 (159)
T TIGR00725 82 FARNFILVRSA----DVVVSVGGGYGTAIEILGAYA------LGGPVVVLR 122 (159)
T ss_pred chHHHHHHHHC----CEEEEcCCchhHHHHHHHHHH------cCCCEEEEE
Confidence 33455544332 566666 56677766654433 355676665
No 226
>PRK13018 cell division protein FtsZ; Provisional
Probab=33.38 E-value=6e+02 Score=26.80 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCC
Q 042534 291 VEFLDNRLKENGHAVLVVAEGAGQ 314 (447)
Q Consensus 291 ~~~i~~r~~~k~~~vIvvaEGa~~ 314 (447)
+..++..++..|.+++=++|+-++
T Consensus 227 f~dv~~vl~~~G~a~iG~G~a~g~ 250 (378)
T PRK13018 227 FADVKSVMKGGGVAMMGVGEAKGQ 250 (378)
T ss_pred HHHHHHHhccCCEEEEEEEEecCC
Confidence 456777777788999988887653
No 227
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=33.32 E-value=56 Score=27.53 Aligned_cols=24 Identities=42% Similarity=0.934 Sum_probs=16.2
Q ss_pred ce-EEEEccCCCCccHHHHHHHHHHHHH
Q 042534 81 TR-AAIVTCGGLCPGLNTVIRELVVGLW 107 (447)
Q Consensus 81 ~k-iaIvtsGG~~PGlN~vIr~vv~~~~ 107 (447)
++ ||.+|||| ||| ..+--.++.+.
T Consensus 28 v~viaf~tCGg-CpG--rlvpn~~k~lk 52 (101)
T COG5561 28 VRVIAFITCGG-CPG--RLVPNQIKQLK 52 (101)
T ss_pred EEEEEEEEcCC-CCc--chhHHHHHHHh
Confidence 44 89999998 899 44444555553
No 228
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=33.31 E-value=6.4e+02 Score=27.08 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=89.7
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH-
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL- 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~- 160 (447)
++||.-. ||-==.||++..+.+++. +. .-+++-|...|+.. ||. |.=++.|+
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~-~~-----------------pvLiEAT~NQVnq~---GGY---TGmtP~dF~ 64 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS-GT-----------------PVLIEATSNQVNQF---GGY---TGMTPADFR 64 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc-CC-----------------cEEEEecccccccc---CCc---CCCCHHHHH
Confidence 3466553 666668999988776432 21 11577788788766 776 44444554
Q ss_pred HHHHHHHHHcCCCE-EEEecCCC-------------cHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 161 HQIVDAIQTNAFNQ-VYIIGGDG-------------TMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 161 ~~iv~~l~~~~Id~-L~vIGGdg-------------S~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
+-+.+.-++.+++. .+++|||= .|..|..+.+..-+.|++ -|++=.|++ ...-..-+.-+|.
T Consensus 65 ~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~v 140 (420)
T TIGR02810 65 DFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATV 140 (420)
T ss_pred HHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHH
Confidence 44455567889998 99999982 355555565555667765 677777777 2222345667888
Q ss_pred HHHHHHHHHHHHHhhh---hcCCcEEEE
Q 042534 227 VEMAQQAISAAHVEAE---SAVNGIGLV 251 (447)
Q Consensus 227 v~~~~~ai~~i~~~A~---S~~~~v~iV 251 (447)
++.+++.+...-.++. ....-+++|
T Consensus 141 AeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 141 AERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 9999988886655554 333457777
No 229
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=33.28 E-value=1.1e+02 Score=32.54 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=30.1
Q ss_pred cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 150 VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 150 ~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
+||.....-|.+++.+.|++.|++...++.|+.|+..-..+
T Consensus 196 iig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~ 236 (443)
T TIGR01862 196 IIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLM 236 (443)
T ss_pred EEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 55544434578899999999999998888888876544443
No 230
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=32.74 E-value=6.5e+02 Score=27.05 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=92.0
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH-
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL- 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~- 160 (447)
++||.-. ||-==.||++..+.+++. +. .-.++-|...|+.. ||. |.=++.|+
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~~-~~-----------------pvLiEAT~NQVnq~---GGY---TGmtP~dF~ 68 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALAN-DS-----------------PLLIEATSNQVDQF---GGY---TGMTPADFR 68 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhhc-CC-----------------cEEEEecccccccc---CCc---CCCCHHHHH
Confidence 3566653 666667999988776432 21 11577788778766 776 44444554
Q ss_pred HHHHHHHHHcCCCE-EEEecCC-------------CcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 161 HQIVDAIQTNAFNQ-VYIIGGD-------------GTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 161 ~~iv~~l~~~~Id~-L~vIGGd-------------gS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
+-+.+.-++.+++. .+++||| ..|..|..+.+..-+.|++ -|++=.|++ ..+-...+.-+|.
T Consensus 69 ~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~v 144 (426)
T PRK15458 69 GFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIV 144 (426)
T ss_pred HHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHH
Confidence 34445567889998 9999998 2366666666666677765 677777777 5555556666888
Q ss_pred HHHHHHHHHHHHHhhh---hcCCcEEEE
Q 042534 227 VEMAQQAISAAHVEAE---SAVNGIGLV 251 (447)
Q Consensus 227 v~~~~~ai~~i~~~A~---S~~~~v~iV 251 (447)
++.+++.+..+-.++. ....-+++|
T Consensus 145 A~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 145 AERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 9999988886655542 223457777
No 231
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.68 E-value=2e+02 Score=34.48 Aligned_cols=107 Identities=11% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCceEEEEccCCCC----ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc
Q 042534 79 KNTRAAIVTCGGLC----PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS 154 (447)
Q Consensus 79 ~~~kiaIvtsGG~~----PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss 154 (447)
+.+||.|+-+|+.. +=..-+-..+.++|. ..|. +|+.+..--.... .++...+....
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~-e~G~-~vi~v~~np~~~~--------~d~~~ad~~y~--------- 66 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALK-EEGY-QVVLVNPNPATIM--------TDPAPADTVYF--------- 66 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHH-HcCC-EEEEEeCCcchhh--------cCcccCCeeEE---------
Confidence 35789999888653 323334456666664 4675 7887642111110 11100000000
Q ss_pred CCcccHHHHHHHHHHcCCCEEEE-ecCCCcHHHHHHHHHH--HHHcCCcceEeeec
Q 042534 155 RGGFDLHQIVDAIQTNAFNQVYI-IGGDGTMRGAVEIFDE--IQRRKINVGVVGIP 207 (447)
Q Consensus 155 R~~~~~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~~~--~~~~~~~i~VVgIP 207 (447)
...+.+.+.+.+++.++|+++. +||+..+..+..|++. +++. +++++|.+
T Consensus 67 -ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~--gv~l~g~~ 119 (1068)
T PRK12815 67 -EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQY--GVELLGTN 119 (1068)
T ss_pred -CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHC--CCEEECCC
Confidence 0124577888899999999985 5888778877777643 4443 45566643
No 232
>PLN02204 diacylglycerol kinase
Probab=32.54 E-value=48 Score=36.96 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=40.8
Q ss_pred eEEEEEcccccccccCCCCeEECChhhhhchhccCCc---cccccCCcccHHHHHHH---HHHcCCCEEEEecCCCcHHH
Q 042534 113 RQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGT---VLETSRGGFDLHQIVDA---IQTNAFNQVYIIGGDGTMRG 186 (447)
Q Consensus 113 ~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt---~LGssR~~~~~~~iv~~---l~~~~Id~L~vIGGdgS~~~ 186 (447)
++++-|.|=+.|=-... -.|+.|..+...-|. ++-|.|.+. ...+++. +...+.|++|++|||||+..
T Consensus 160 k~llVivNP~sGkg~~~-----~~~~~V~p~f~~a~i~~~v~~T~~agh-A~d~~~~~~~~~l~~~D~VVaVGGDGt~nE 233 (601)
T PLN02204 160 KNLLVFVHPLSGKGSGS-----RTWETVSPIFIRAKVKTKVIVTERAGH-AFDVMASISNKELKSYDGVIAVGGDGFFNE 233 (601)
T ss_pred ceEEEEECCCCCCcchH-----HHHHHHHHHHHHcCCeEEEEEecCcch-HHHHHHHHhhhhccCCCEEEEEcCccHHHH
Confidence 46666666555421111 235566666655542 555666542 2233332 23567899999999999876
Q ss_pred HH
Q 042534 187 AV 188 (447)
Q Consensus 187 A~ 188 (447)
+.
T Consensus 234 Vl 235 (601)
T PLN02204 234 IL 235 (601)
T ss_pred HH
Confidence 53
No 233
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.52 E-value=2.6e+02 Score=27.50 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHHHcCCCE
Q 042534 98 VIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQ 174 (447)
Q Consensus 98 vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~ 174 (447)
..+.++..+. ..+++++.-+..... +. ..+-....+.+...|+.+.+..+.. .|+...+..+++.+-|.
T Consensus 124 ~~~~l~~~~~-~~~~~~vail~~~~~--~g-----~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~ 195 (312)
T cd06346 124 QGQALAQLAA-ERGYKSVATTYINND--YG-----VGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDA 195 (312)
T ss_pred HHHHHHHHHH-HcCCCeEEEEEccCc--hh-----hHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCE
Confidence 3455555553 456666654432211 10 1111222344556788877765543 47889999999999999
Q ss_pred EEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 175 VYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 175 L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
+|+.+... .+..+.+.+++.|++.++++
T Consensus 196 v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 196 LVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred EEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 98775433 34445566677777655544
No 234
>PLN00197 beta-amylase; Provisional
Probab=32.31 E-value=2.9e+02 Score=30.63 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCCc--HHHHHHHHHHHHHcCCcceEe----------------eecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDGT--MRGAVEIFDEIQRRKINVGVV----------------GIPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--GdgS--~~~A~~L~~~~~~~~~~i~VV----------------gIPkTI--- 210 (447)
++.=+..||..|++++.+ += |.+- ..+-.+|++.+++.|+++.+| -+|+-+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 567788899999999864 33 3333 456678999999999998876 267665
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhc-CCcEEEEEe
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESA-VNGIGLVKL 253 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~-~~~v~iVev 253 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-... ..-|.=|++
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~V 272 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQV 272 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEe
Confidence 349999996 89998 55999999999999887663 334444454
No 235
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=31.54 E-value=65 Score=28.43 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceE
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGV 203 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~V 203 (447)
.+.+.+.+++++||.+++-=-+.....-.++.++|++.++++.+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 56788999999999999988888888888999999888766554
No 236
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.35 E-value=1.1e+02 Score=28.71 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=35.5
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++++..||+++-
T Consensus 141 LS~G~~qrv~la~al~~~-p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 141 LSGGQQQRVAIARALAND-PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred cCHHHHHHHHHHHHHccC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 334444458889999997 99999877544444 2334555555433335677887764
No 237
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=31.29 E-value=3.2e+02 Score=25.50 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHHH
Q 042534 93 PGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQT 169 (447)
Q Consensus 93 PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~~ 169 (447)
|.-+...+.+++.+....++++|.-+..... .. .+......+.+...|..+....... .+....+..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~--~~-----~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 188 (298)
T cd06268 116 PSDAQQAAALADYLAEKGKVKKVAIIYDDYA--YG-----RGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA 188 (298)
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEEEcCCc--hh-----HHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh
Confidence 4445566777776654332556554432211 00 0011111223344555554443322 357788888888
Q ss_pred cCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 170 NAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+.+.+++.+... .+..+.+.+.+.|+++++++..
T Consensus 189 ~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 223 (298)
T cd06268 189 AGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGGD 223 (298)
T ss_pred cCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEecC
Confidence 8899888776542 2344556667777766666543
No 238
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.26 E-value=4.4e+02 Score=24.60 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=90.6
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~~ 161 (447)
|||+.....-|-...+.+++-..+. .+++. +.-+ +.+... ....
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~-~~g~~-~~~~---------------------------------~~~~~d~~~q~ 45 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAK-ELGYE-VEIV---------------------------------FDAQNDPEEQI 45 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH-HHTCE-EEEE---------------------------------EESTTTHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHH-HcCCE-EEEe---------------------------------CCCCCCHHHHH
Confidence 6888888888877778888877774 56652 2211 011111 2346
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc-c--cCcCcccChhhHHHHHHHHHHHHH
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND-V--GIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND-i--~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
+.++++.+.++|++++..-+.+... .+.+++.+.| |+||. +|+| . .....++|+|.. +....+.+.+.
T Consensus 46 ~~i~~~i~~~~d~Iiv~~~~~~~~~--~~l~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~l~ 116 (257)
T PF13407_consen 46 EQIEQAISQGVDGIIVSPVDPDSLA--PFLEKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEYLA 116 (257)
T ss_dssp HHHHHHHHTTESEEEEESSSTTTTH--HHHHHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEecCCCHHHHH--HHHHHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHHHH
Confidence 7888888999999999888875433 2335555554 56765 6666 2 334567777642 33333344443
Q ss_pred HhhhhcCCcEEEE-EecC------CccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCC
Q 042534 239 VEAESAVNGIGLV-KLMG------RSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENG 302 (447)
Q Consensus 239 ~~A~S~~~~v~iV-evMG------R~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~ 302 (447)
..... +..+.++ ...+ |..|+ ..+|... .++-+++|..+.-.....-.+.+.+.++.+.
T Consensus 117 ~~~~~-~~~v~~~~~~~~~~~~~~r~~g~---~~~l~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 182 (257)
T PF13407_consen 117 EKLGA-KGKVLILSGSPGNPNTQERLEGF---RDALKEY-PGVEIVDEYEYTDWDPEDARQAIENLLQANP 182 (257)
T ss_dssp HHHTT-TEEEEEEESSTTSHHHHHHHHHH---HHHHHHC-TTEEEEEEEEECTTSHHHHHHHHHHHHHHTT
T ss_pred HHhcc-CceEEeccCCCCchHHHHHHHHH---HHHHhhc-ceeeeeeeeeccCCCHHHHHHHHHHhhhcCC
Confidence 33322 2345544 2222 11222 2234432 4666666432212222245555666666554
No 239
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.23 E-value=1.4e+02 Score=27.40 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCccc
Q 042534 80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFD 159 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~ 159 (447)
..|+.++ |-.|+..+ .++..+.+.|...+|.|.++||-+..++. +.++.|...+--++=.+=+.+.
T Consensus 46 ~~~v~ll---G~~~~~~~---~~~~~l~~~yp~l~i~g~~~g~~~~~~~~--------~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 46 GLRVFLL---GAKPEVLE---KAAERLRARYPGLKIVGYHHGYFGPEEEE--------EIIERINASGADILFVGLGAPK 111 (171)
T ss_pred CCeEEEE---CCCHHHHH---HHHHHHHHHCCCcEEEEecCCCCChhhHH--------HHHHHHHHcCCCEEEEECCCCH
Confidence 4667777 34555444 44444556787789999999998753322 2566666666544433333344
Q ss_pred HHHHHH-HHHHcCCCEEEEecC
Q 042534 160 LHQIVD-AIQTNAFNQVYIIGG 180 (447)
Q Consensus 160 ~~~iv~-~l~~~~Id~L~vIGG 180 (447)
.|..+. +.++.+-..++.+||
T Consensus 112 QE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 112 QELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHHHCCCCEEEEece
Confidence 455444 444446777888888
No 240
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=31.22 E-value=4.4e+02 Score=24.53 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.+.+.+.+.++|++++.+.+..... + +++.+. +++||.+
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~~~~~~---~-~~~~~~--~ipvV~~ 88 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTRPDDPR---V-ALLLER--GFPFVTH 88 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCChH---H-HHHHhc--CCCEEEE
Confidence 34444556778999999887644221 2 333333 5667766
No 241
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.19 E-value=4.4e+02 Score=24.52 Aligned_cols=82 Identities=9% Similarity=0.075 Sum_probs=51.8
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~~ 161 (447)
|++|.....-|-...++.++.+.+. .+|+ +++-+ .+... ....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~-~~g~-~~~~~----------------------------------~~~~~~~~~~ 45 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAR-EAGY-GVLLG----------------------------------DTRSDPEREQ 45 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHH-HcCC-eEEEe----------------------------------cCCCChHHHH
Confidence 6777777778889999999988874 4554 22210 11111 1245
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+++.+.+.++|++++.+.+.... +.+.. +. +++||.+-
T Consensus 46 ~~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~ 84 (267)
T cd06284 46 EYLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQAC 84 (267)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEe
Confidence 678889999999999988765433 11222 22 56777663
No 242
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=31.07 E-value=73 Score=31.95 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=35.4
Q ss_pred hhhhchhccCCccccccCCcccHHHH-----------------------------HHHHHHc-CCCEEEE-ecCCCcHHH
Q 042534 138 KMVRGWHKLGGTVLETSRGGFDLHQI-----------------------------VDAIQTN-AFNQVYI-IGGDGTMRG 186 (447)
Q Consensus 138 ~~v~~i~~~GGt~LGssR~~~~~~~i-----------------------------v~~l~~~-~Id~L~v-IGGdgS~~~ 186 (447)
..|.....-||.++-+.|+..+++++ .+.|++- .||+||+ +||-|-+.+
T Consensus 110 ~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSg 189 (323)
T KOG1251|consen 110 CKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSG 189 (323)
T ss_pred HHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhH
Confidence 45777788888888777765433322 3333333 4888876 788777777
Q ss_pred HHHHHHH
Q 042534 187 AVEIFDE 193 (447)
Q Consensus 187 A~~L~~~ 193 (447)
....++.
T Consensus 190 vAlaa~~ 196 (323)
T KOG1251|consen 190 VALAAKS 196 (323)
T ss_pred HHHHHhc
Confidence 6655544
No 243
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=30.82 E-value=78 Score=25.70 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=28.3
Q ss_pred cCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHH
Q 042534 146 LGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMR 185 (447)
Q Consensus 146 ~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~ 185 (447)
.++-+|=+. ...+ +.+.+.|+++++..+++|||.++..
T Consensus 49 ~~~PIll~~-~~l~-~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 49 NNAPILLVN-NSLP-SSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred cCCeEEEEC-CCCC-HHHHHHHHHcCCCEEEEECCCCccC
Confidence 334455555 3333 7888889999999999999999854
No 244
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=30.65 E-value=1.3e+02 Score=32.30 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=58.1
Q ss_pred EEccCCCCccHHH-HHHHHHHHHHHhcC-CeEEEEE-cccccccccCCCCeEECChhhhhchh-------ccCCc--ccc
Q 042534 85 IVTCGGLCPGLNT-VIRELVVGLWELYG-VRQILGI-QAGYRGFYSTTRNPLVLNPKMVRGWH-------KLGGT--VLE 152 (447)
Q Consensus 85 IvtsGG~~PGlN~-vIr~vv~~~~~~~~-~~~V~Gi-~~G~~GL~~~~~~~~~L~~~~v~~i~-------~~GGt--~LG 152 (447)
|...+...|++.- =|.++++.+...++ . .|+.+ -.||.|-..... +..-....++.+. ...++ +||
T Consensus 129 I~V~stC~~~lIGDDi~~v~~e~~~~~~~~-pvv~v~t~gf~g~s~~~G-~~~a~~al~~~l~~~~~~~~~~~~~VNiiG 206 (457)
T TIGR01284 129 MYTYATCTTALIGDDIDAIAREVMEEIPDV-DVFAINAPGFAGPSQSKG-HHVANITWINDKVGTAEPEITTEYDVNLIG 206 (457)
T ss_pred EEEECCChHHhhccCHHHHHHHHHHhcCCC-eEEEeeCCCcCCcccchH-HHHHHHHHHHHHhCccCcccCCCCeEEEEc
Confidence 3333445666543 37777777766665 4 45554 477777322110 0000000011110 01222 555
Q ss_pred ccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHH
Q 042534 153 TSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIF 191 (447)
Q Consensus 153 ssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~ 191 (447)
.....-|.+++.+.|++.||+.+-++.|+.|+..-..+.
T Consensus 207 ~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~ 245 (457)
T TIGR01284 207 EYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMH 245 (457)
T ss_pred cCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 433335789999999999999998999998876555443
No 245
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.65 E-value=4.5e+02 Score=24.52 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC-c-CcccChhhHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI-I-DRSFGFQTAVEMAQQAISAA 237 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~-t-D~s~GFdTAv~~~~~ai~~i 237 (447)
.+.+.+.+.+.++|++++...+... .+.+++.++ +++||.+ |++... . -.+++.|-. ....++.+.+
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~--~ipvV~~----~~~~~~~~~~~~v~~d~~-~~g~~~~~~l 117 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEE--KFPFVVI----GKPEDDKENITYVDNDNI-QAGYDATEYL 117 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhc--CCCEEEE----CCCCCCCCCCCeEEECcH-HHHHHHHHHH
Confidence 3455555677889999999764432 122344444 4667754 444332 1 123444431 2222333333
Q ss_pred HHhhhhcCCcEEEEE
Q 042534 238 HVEAESAVNGIGLVK 252 (447)
Q Consensus 238 ~~~A~S~~~~v~iVe 252 (447)
... . ++++.++-
T Consensus 118 ~~~--g-~~~i~~i~ 129 (270)
T cd06294 118 IKL--G-HKKIAFVG 129 (270)
T ss_pred HHc--C-CccEEEec
Confidence 322 3 56788774
No 246
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=30.39 E-value=1.6e+02 Score=30.47 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDG 182 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdg 182 (447)
+.++.+.+++.+.|.++.+||=+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC
Confidence 56888999999999999999743
No 247
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=30.23 E-value=33 Score=33.27 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCc
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKIN 200 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~ 200 (447)
-+..+.|+++||| ||.||+-|+.. .|+++|+.
T Consensus 16 p~~~~vf~~~~id--fCcgG~~~l~e------a~~~~~i~ 47 (220)
T PRK10992 16 PRATALFREYDLD--FCCGGKQTLAR------AAARKNLD 47 (220)
T ss_pred ccHHHHHHHcCCc--ccCCCCchHHH------HHHHcCCC
Confidence 3566789999999 89999998554 44555544
No 248
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.98 E-value=2.5e+02 Score=29.35 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee-cccccccccCcCcccChhhHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI-PKTVDNDVGIIDRSFGFQTAVEMAQQAISAAH 238 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI-PkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~ 238 (447)
.-++++.+++.--+..++.|.-.|..+|..|.+ .|...--||| |.+|.-==.-+-.-..--||+..++++....
T Consensus 138 ~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~- 212 (346)
T PRK05096 138 FVQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL- 212 (346)
T ss_pred HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc-
Confidence 456677777755555555555577887777754 4655444565 7776533222111123445655555543321
Q ss_pred HhhhhcCCcEEEEEecC-CccchHHHHHhhccCCccEEecC
Q 042534 239 VEAESAVNGIGLVKLMG-RSTGHIALHATLSSRDVDCCLIP 278 (447)
Q Consensus 239 ~~A~S~~~~v~iVevMG-R~sG~lAl~aaLA~~~ad~ilIP 278 (447)
++-||-==| |++|+|+- |||.| ||.+.+-
T Consensus 213 --------gvpiIADGGi~~sGDI~K--AlaaG-Ad~VMlG 242 (346)
T PRK05096 213 --------GGQIVSDGGCTVPGDVAK--AFGGG-ADFVMLG 242 (346)
T ss_pred --------CCCEEecCCcccccHHHH--HHHcC-CCEEEeC
Confidence 233332111 78999986 45556 8887764
No 249
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=29.65 E-value=1.3e+02 Score=33.02 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHH
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFD 192 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~ 192 (447)
-|+.++.+.|+++||+.+.++.|+.|+.....+.+
T Consensus 215 gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~ 249 (513)
T TIGR01861 215 GDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHR 249 (513)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhcc
Confidence 47899999999999999999999999877666543
No 250
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=29.64 E-value=82 Score=31.63 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=39.3
Q ss_pred ccCCc--ccHHHHHHHHHHcCCCEEEEecCCCc------------HHHHHHHHHHHHHc---CCcceEeeec
Q 042534 153 TSRGG--FDLHQIVDAIQTNAFNQVYIIGGDGT------------MRGAVEIFDEIQRR---KINVGVVGIP 207 (447)
Q Consensus 153 ssR~~--~~~~~iv~~l~~~~Id~L~vIGGdgS------------~~~A~~L~~~~~~~---~~~i~VVgIP 207 (447)
|+|.. ..++..+..+.+.||+.+++++||-. +..|..|-+.+++. .+.|-|.+-|
T Consensus 67 tcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 67 TCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 45543 35778888889999999999999983 23466676766653 2566677776
No 251
>PLN02335 anthranilate synthase
Probab=29.54 E-value=79 Score=30.46 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=32.1
Q ss_pred HHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhh
Q 042534 167 IQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQT 225 (447)
Q Consensus 167 l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdT 225 (447)
+++++.+++|+-||-|+-.......+.+++.+-+++|.|| |+||+-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Ql 103 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQC 103 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHH
Confidence 4557899999999999876543333444444445677766 999984
No 252
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=29.52 E-value=1.2e+02 Score=28.45 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.|++..++.+.+||+++-
T Consensus 128 ~LS~G~~qrl~laral~~~-p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh 187 (213)
T TIGR01277 128 QLSGGQRQRVALARCLVRP-NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187 (213)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4545555567888889886 99999877544444 3345566666554555778888864
No 253
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=29.48 E-value=1.2e+02 Score=28.71 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|..-=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+.+||+++
T Consensus 146 ~LS~Ge~qrl~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGR-PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3444444457888899986 99999866544454 233455555544344466777775
No 254
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=29.30 E-value=1.4e+02 Score=32.27 Aligned_cols=52 Identities=6% Similarity=0.150 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVD 211 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTID 211 (447)
+++.++..|-+..+|.++||||--|-.+.+ |++-+++++.+.--|-=|.-|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT~~-L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNTSH-LQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccHHH-HHHHHHHhCCCEEEECCHHHcC
Confidence 356777777666899999999999877755 7788887776666666677676
No 255
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.07 E-value=4.9e+02 Score=24.44 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
||||+..-=.-|-...++.++-..+. .+|+. +.=+ . -.+.+......
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~-~~g~~-~~~~-----------------~--------------~~~~~~~~~~~ 47 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAK-ELGVK-VTFQ-----------------G--------------PASETDVAGQV 47 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHH-HcCCE-EEEe-----------------c--------------CccCCCHHHHH
Confidence 68888754346677777888777763 34431 1100 0 00111212346
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccC-c-CcccChhhHHHHHHHHHHHHHH
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGI-I-DRSFGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~-t-D~s~GFdTAv~~~~~ai~~i~~ 239 (447)
++++++...++|++|+.+.+... .....+.+.+. ++++|.+ |.+... . -.++++|-. +.+..+.+.+..
T Consensus 48 ~~i~~l~~~~vdgvii~~~~~~~--~~~~l~~~~~~--~ipvV~~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~ 118 (273)
T cd06310 48 NLLENAIARGPDAILLAPTDAKA--LVPPLKEAKDA--GIPVVLI----DSGLNSDIAVSFVATDNV-AAGKLAAEALAE 118 (273)
T ss_pred HHHHHHHHhCCCEEEEcCCChhh--hHHHHHHHHHC--CCCEEEe----cCCCCCCcceEEEeeChH-HHHHHHHHHHHH
Confidence 77888889999999998876431 11222333333 4667765 333221 1 134555531 122233333332
Q ss_pred hhhhcCCcEEEEE
Q 042534 240 EAESAVNGIGLVK 252 (447)
Q Consensus 240 ~A~S~~~~v~iVe 252 (447)
.... ++++.++-
T Consensus 119 ~~~g-~~~i~~i~ 130 (273)
T cd06310 119 LLGK-KGKVAVIS 130 (273)
T ss_pred HcCC-CceEEEEe
Confidence 2223 56788774
No 256
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.01 E-value=1.3e+02 Score=23.42 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=26.8
Q ss_pred CcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhc
Q 042534 199 INVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESA 244 (447)
Q Consensus 199 ~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~ 244 (447)
.+|.+|.||-+.|-|.. +--....+-++.+...|.+.
T Consensus 22 ~GIRFVpiPv~~dee~~---------~L~s~~~~kLe~ma~~aE~~ 58 (61)
T PF07131_consen 22 IGIRFVPIPVVTDEEFH---------TLSSQLSQKLERMAAEAEKA 58 (61)
T ss_pred cCceeeccccccHHHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 46889999999998853 33455666677777777764
No 257
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=28.97 E-value=2.5e+02 Score=28.85 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=57.8
Q ss_pred EEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccc-ccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 84 AIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAG-YRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 84 aIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G-~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
.||.||.+.||++.-...=+....++++..-++=.-+- ..=.++....++.-+.+.++.|.++. +-+ ..|..+
T Consensus 132 ~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g~~---~~~---~~d~i~ 205 (310)
T COG1105 132 IVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFGRE---LTT---LEDVIK 205 (310)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhCCC---CCC---hHHHHH
Confidence 48889999999988766544433356665333322111 11112333336666777777665442 211 136777
Q ss_pred HHHHHHHcCCCEEEE-ecCCCcHH
Q 042534 163 IVDAIQTNAFNQVYI-IGGDGTMR 185 (447)
Q Consensus 163 iv~~l~~~~Id~L~v-IGGdgS~~ 185 (447)
.++.|...++..++| .|++|++-
T Consensus 206 ~a~~l~~~g~~~ViVSlG~~Gal~ 229 (310)
T COG1105 206 AARELLAEGIENVIVSLGADGALL 229 (310)
T ss_pred HHHHHHHCCCCEEEEEecCcccEE
Confidence 777799999987655 89999854
No 258
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.92 E-value=5.3e+02 Score=26.08 Aligned_cols=104 Identities=16% Similarity=0.018 Sum_probs=63.7
Q ss_pred CccHHHHHHHHHHHHHHhc----CCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELY----GVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIV 164 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~----~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv 164 (447)
.|......+.+++.+.+.. +.++|.-+..-+. + -..+-....+.+...|+.+.+..+.. .|+...+
T Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~-----g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v 188 (351)
T cd06334 116 GPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--F-----GKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQW 188 (351)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--c-----chhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHH
Confidence 4455556677777665544 3566666543211 1 01112222334556777787777654 4789999
Q ss_pred HHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 165 ~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
..+++.+-|+||+.+-.. .+..+.+.+++.|++.++++
T Consensus 189 ~~i~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 189 LQIRRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred HHHHHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEE
Confidence 999999999998765443 33446677777888766664
No 259
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.92 E-value=61 Score=29.69 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=31.8
Q ss_pred ccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 153 TSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 153 ssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
--|....+.+.++++++.+++.+|++-|-...- +-.++-. ...+|||||-.
T Consensus 37 aHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L-pgvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 37 AHRTPERLLEFVKEYEARGADVIIAVAGMSAAL-PGVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H-HHHHHHH-----SSS-EEEEEE-
T ss_pred ccCCHHHHHHHHHHhccCCCEEEEEECCCcccc-hhhheec-----cCCCEEEeecC
Confidence 346556677888888888899888776653322 2234332 46899999954
No 260
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=28.87 E-value=2.7e+02 Score=27.70 Aligned_cols=63 Identities=6% Similarity=-0.037 Sum_probs=44.8
Q ss_pred hchhc--cCCccccccCCc----ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 141 RGWHK--LGGTVLETSRGG----FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 141 ~~i~~--~GGt~LGssR~~----~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.+.. .|+++++..+.. .|+...+..+++.+.|.+++++..+ .+..+.+.+++.|+..++++.
T Consensus 165 ~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 165 AMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred HHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 34445 778888765543 4678888999999999998877443 234577788888887666643
No 261
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.78 E-value=62 Score=32.67 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
++++.+..| ...+|.++||||--|-.+. +|++-+++.+.+.-.|-=|.=||-+
T Consensus 198 ~RQ~a~~~L-a~~vD~miVVGg~~SsNT~-rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 198 KRQESAKEL-SKEVDVMIVIGGKHSSNTQ-KLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hHHHHHHHH-HHhCCEEEEecCCCCccHH-HHHHHHHHHCCCEEEECChHHCCHH
Confidence 356677777 4579999999999987764 4778887777556666666666644
No 262
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=28.68 E-value=1.4e+02 Score=27.02 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHc--CCCEEEEecCCCcHHH-HHHHHHHHHHcCCcceE
Q 042534 159 DLHQIVDAIQTN--AFNQVYIIGGDGTMRG-AVEIFDEIQRRKINVGV 203 (447)
Q Consensus 159 ~~~~iv~~l~~~--~Id~L~vIGGdgS~~~-A~~L~~~~~~~~~~i~V 203 (447)
+.+++.+.+++. .+.++.+-||+ .+.. ...|.+.++++|+++.+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 456666666665 57899999999 5533 56788888887766543
No 263
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.63 E-value=2.1e+02 Score=30.35 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=32.3
Q ss_pred HHHHHHHH---HcCCCEEEEecCCCcHHHHHHHHHHHHHc---CCcceEe-eecccccccc
Q 042534 161 HQIVDAIQ---TNAFNQVYIIGGDGTMRGAVEIFDEIQRR---KINVGVV-GIPKTVDNDV 214 (447)
Q Consensus 161 ~~iv~~l~---~~~Id~L~vIGGdgS~~~A~~L~~~~~~~---~~~i~VV-gIPkTIDNDi 214 (447)
..|++.|+ +.++|.++++=|-||...-..+.+|.-.+ .+++||| ||=--+|.=|
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl 239 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTI 239 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccH
Confidence 34444443 33469999999999988875554442221 3456655 5666655544
No 264
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=28.56 E-value=3.9e+02 Score=26.54 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=40.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
..||++...-..|=...++.++-..+. .+|.. ++ +... .......
T Consensus 60 ~~Igvi~~~~~~~f~~~~~~gi~~~~~-~~g~~-~~---------~~~~------------------------~~~~~~~ 104 (343)
T PRK10727 60 ETVGLVVGDVSDPFFGAMVKAVEQVAY-HTGNF-LL---------IGNG------------------------YHNEQKE 104 (343)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHHH-HcCCE-EE---------EEeC------------------------CCCHHHH
Confidence 458888765556677777777777764 34431 11 1000 0001123
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDG 182 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdg 182 (447)
.+.++.|...++|++++.+.+-
T Consensus 105 ~~~i~~l~~~~vdgiIi~~~~~ 126 (343)
T PRK10727 105 RQAIEQLIRHRCAALVVHAKMI 126 (343)
T ss_pred HHHHHHHHhcCCCEEEEecCCC
Confidence 4567788899999999998653
No 265
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=28.56 E-value=1.2e+02 Score=28.70 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=36.8
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.+++..++++..||+++-
T Consensus 137 ~LS~G~~qrv~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh 196 (225)
T PRK10247 137 ELSGGEKQRISLIRNLQFM-PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196 (225)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 4555555568889999997 99999966444444 2334445555444445677887763
No 266
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.54 E-value=1.3e+02 Score=28.11 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=37.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++++..||+++-
T Consensus 128 ~LS~G~~qrv~ia~al~~~-p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 187 (211)
T cd03298 128 ELSGGERQRVALARVLVRD-KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187 (211)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4545555568888999986 99999877544444 3344555665443445777887763
No 267
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=28.51 E-value=5.4e+02 Score=24.98 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=47.4
Q ss_pred CEEEEecCCC----cHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcE
Q 042534 173 NQVYIIGGDG----TMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI 248 (447)
Q Consensus 173 d~L~vIGGdg----S~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v 248 (447)
-.|++.||.+ +.+.-..+++.+.++|+.+-.+=.|.-=+++ . ...+++...+.+..+++.+..+... .+++
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~--~--~~~~~~~~~~d~~~~~~~l~~~~~g-~~~i 102 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE--G--ENLGFEGIDADIAAAIDAFREAAPH-LRRI 102 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHHHhhCCC-CCcE
Confidence 4677888874 3443456778888888765454444332222 1 1145666666677777777644322 2344
Q ss_pred EEEEecCCcc-chHHHHHhh
Q 042534 249 GLVKLMGRST-GHIALHATL 267 (447)
Q Consensus 249 ~iVevMGR~s-G~lAl~aaL 267 (447)
.+ +|.+. |.+|+..+.
T Consensus 103 ~l---~G~S~Gg~~a~~~a~ 119 (274)
T TIGR03100 103 VA---WGLCDAASAALLYAP 119 (274)
T ss_pred EE---EEECHHHHHHHHHhh
Confidence 44 45554 445555443
No 268
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.16 E-value=1.2e+02 Score=29.51 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=35.9
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|..-=-+++..+|+.. ++++++=|.--.||- ...+.+.|++..++.+.+||+++-
T Consensus 116 LSgGe~qrv~iaraL~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 116 LSGGELQRVAIAACLSKD-ADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 334344457888899986 999999775545552 234445555444445677887764
No 269
>PLN02735 carbamoyl-phosphate synthase
Probab=28.10 E-value=3e+02 Score=33.17 Aligned_cols=99 Identities=10% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCceEEEEccCCCCcc----HHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc
Q 042534 79 KNTRAAIVTCGGLCPG----LNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS 154 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PG----lN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss 154 (447)
.++||-|+=+|..-=| .--+...++++|+ ..|. +++.+.+ +.+.+-.+.+..+.....
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr-~~G~-~tI~v~~--------npetvstd~~~aD~~y~~-------- 634 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQ-DAGY-ETIMMNS--------NPETVSTDYDTSDRLYFE-------- 634 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHH-HcCC-eEEEEeC--------CCccccCCcccCCeEEEE--------
Confidence 4577888888764333 2234445666774 4676 5554432 211111111111111111
Q ss_pred CCcccHHHHHHHHHHcCCCEEEE-ecCCCcHHHHHHHHHHHHHc
Q 042534 155 RGGFDLHQIVDAIQTNAFNQVYI-IGGDGTMRGAVEIFDEIQRR 197 (447)
Q Consensus 155 R~~~~~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~~~~~~~ 197 (447)
....+.+++.+++.++|++++ +||+-.+.-|..+.+.+.++
T Consensus 635 --pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~ 676 (1102)
T PLN02735 635 --PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKN 676 (1102)
T ss_pred --eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhc
Confidence 124799999999999999986 78888888888887765544
No 270
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.97 E-value=1.5e+02 Score=30.13 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccc-cCc---CcccChhhHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDV-GII---DRSFGFQTAVEMAQQAIS 235 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi-~~t---D~s~GFdTAv~~~~~ai~ 235 (447)
+++.+..|-+ .+|.++||||-.|-.+. +|++-+++.+.+.-.|-=+.=||-+. .+. --|=|-.|=-..+.+.+.
T Consensus 200 RQ~a~~~La~-~vD~miVVGg~~SsNT~-kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~ 277 (298)
T PRK01045 200 RQEAVKELAP-QADLVIVVGSKNSSNSN-RLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIA 277 (298)
T ss_pred HHHHHHHHHh-hCCEEEEECCCCCccHH-HHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHH
Confidence 5666666644 79999999999997764 48788887776666666677676332 221 124444444444444444
Q ss_pred HH
Q 042534 236 AA 237 (447)
Q Consensus 236 ~i 237 (447)
.+
T Consensus 278 ~l 279 (298)
T PRK01045 278 RL 279 (298)
T ss_pred HH
Confidence 44
No 271
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.95 E-value=5e+02 Score=24.22 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=42.3
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~~ 161 (447)
|||+...=.-|=.+.++.++...+. .+|+.-+++ ++... ....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~-~~gy~~~~~-----------------------------------~~~~~~~~~~ 45 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLN-GSGYSPIIA-----------------------------------TGHWNQSREL 45 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHH-HCCCEEEEE-----------------------------------eCCCCHHHHH
Confidence 6777655556777888888877763 455422221 11111 1356
Q ss_pred HHHHHHHHcCCCEEEEecCCCc
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGT 183 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS 183 (447)
++++.+...++|++++.+.+-+
T Consensus 46 ~~i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 46 EALELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHHHCCCCEEEEeCCCCC
Confidence 7888999999999999987644
No 272
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=27.93 E-value=1.3e+02 Score=28.57 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=33.0
Q ss_pred cchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 258 TGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 258 sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
-=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++++..||+++-
T Consensus 151 ~qrl~la~al~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH 204 (233)
T PRK11629 151 RQRVAIARALVNN-PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3347788888886 99999977443444 2334555555433345778887764
No 273
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.92 E-value=1.5e+02 Score=31.21 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCccHH-HHHHHHHHHHHHhcC-CeEEEEE-cccccccccC-CC---------CeEEC-Chhhhhchhcc
Q 042534 81 TRAAIVTCGGLCPGLN-TVIRELVVGLWELYG-VRQILGI-QAGYRGFYST-TR---------NPLVL-NPKMVRGWHKL 146 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN-~vIr~vv~~~~~~~~-~~~V~Gi-~~G~~GL~~~-~~---------~~~~L-~~~~v~~i~~~ 146 (447)
+-|+|+++ ..|++. +=|.++++.+..+++ . .|+-+ ..||.|-... .. +++.. .+.. ..
T Consensus 90 ~~i~V~~t--c~~~liGdDi~~v~~~~~~~~~~~-~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~-----~~ 161 (415)
T cd01977 90 KRMTVYTT--CTTALIGDDIKAVAKEVMEELPDV-DIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEI-----TS 161 (415)
T ss_pred cEEEEECC--CchhhhcCCHHHHHHHHHHhcCCC-eEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCc-----CC
Confidence 33666653 455544 347778887766666 4 45444 4666653211 10 01110 0000 01
Q ss_pred CCc--cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHH
Q 042534 147 GGT--VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVE 189 (447)
Q Consensus 147 GGt--~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~ 189 (447)
..+ +||.....-|.+++.+.|+++|++..-++.|+.|+..-.+
T Consensus 162 ~~~VNliG~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~ 206 (415)
T cd01977 162 DYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRW 206 (415)
T ss_pred CCcEEEEccCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHh
Confidence 222 5554444457899999999999999888888887654443
No 274
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=27.70 E-value=1.3e+02 Score=28.65 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=36.6
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++++.+||+++
T Consensus 132 ~LS~G~~qrl~laral~~~-p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 190 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHR-PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWAT 190 (236)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4445455567889999997 99999877544454 233455555543334567787776
No 275
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.44 E-value=3.2e+02 Score=27.08 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=41.1
Q ss_pred chhccCCccccccCCc---ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEe
Q 042534 142 GWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVV 204 (447)
Q Consensus 142 ~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VV 204 (447)
.+...|+.+.++.+.. .|+...+..|++.+-|.+++.+ .+. .+..+.+.+++.|++.+++
T Consensus 160 ~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~ 222 (344)
T cd06348 160 ALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISA-LAA--DGGNLVRQLRELGYNGLIV 222 (344)
T ss_pred HHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECC-cch--hHHHHHHHHHHcCCCCcee
Confidence 3345677777765543 4788999999999999866555 443 3345667788888875554
No 276
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.19 E-value=3e+02 Score=24.49 Aligned_cols=103 Identities=11% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhh-hhchhccCCcccccc-CC
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKM-VRGWHKLGGTVLETS-RG 156 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~-v~~i~~~GGt~LGss-R~ 156 (447)
++.|+-+.+.||+.=.+..-+-+.. .+..|+ +|+- -+ ..++++. ++-.....--+++-| ..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~---lr~~G~-eVi~---------LG----~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRA---LTEAGF-EVIN---------LG----VMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHH---HHHCCC-EEEE---------CC----CCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 3567888888999887777655554 345676 3331 11 1133333 333333333344433 22
Q ss_pred c---ccHHHHHHHHHHcCC-CEEEEecCCCcHHH--HHHHHHHHHHcC
Q 042534 157 G---FDLHQIVDAIQTNAF-NQVYIIGGDGTMRG--AVEIFDEIQRRK 198 (447)
Q Consensus 157 ~---~~~~~iv~~l~~~~I-d~L~vIGGdgS~~~--A~~L~~~~~~~~ 198 (447)
. ....++++.|++.+. +..+++||.-+... .....+++++.|
T Consensus 65 ~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 65 GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC
Confidence 1 357888999999977 67789999864321 344555666655
No 277
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.12 E-value=1.4e+02 Score=27.92 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=36.8
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+..||+++-
T Consensus 130 ~LSgG~~qrl~la~al~~~-p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 189 (213)
T cd03259 130 ELSGGQQQRVALARALARE-PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189 (213)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 3444444558888999987 99999877544454 2334555555443445778887764
No 278
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=27.09 E-value=1.6e+02 Score=31.72 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=57.3
Q ss_pred EEEEccCCCCccHHHH-HHHHHHHHHHhcCCeEEEEEc-ccccccccCCCCeEECChhhhhchh-------ccCCc--cc
Q 042534 83 AAIVTCGGLCPGLNTV-IRELVVGLWELYGVRQILGIQ-AGYRGFYSTTRNPLVLNPKMVRGWH-------KLGGT--VL 151 (447)
Q Consensus 83 iaIvtsGG~~PGlN~v-Ir~vv~~~~~~~~~~~V~Gi~-~G~~GL~~~~~~~~~L~~~~v~~i~-------~~GGt--~L 151 (447)
|+|+++ .+|++.-- |.++++.+...++. .|+.+. .||.|=.... +.......++.+. ....+ +|
T Consensus 123 I~V~tT--C~~~lIGdDi~~v~~~~~~~~~~-pvi~v~t~Gf~g~~~~G--~~~a~~al~~~l~~~~~~~~~~~~~VNii 197 (475)
T PRK14478 123 VFVYQT--CVVALIGDDIDAVCKRAAEKFGI-PVIPVNSPGFVGNKNLG--NKLAGEALLDHVIGTVEPEDTTPYDINIL 197 (475)
T ss_pred EEEeCC--ChHHHhccCHHHHHHHHHHhhCC-CEEEEECCCcccchhhh--HHHHHHHHHHHHhccCCccCCCCCeEEEE
Confidence 555553 46665433 67777766555665 455554 7777732211 0000000111110 11233 56
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
|.....-|++++.+.|+++||+...++.|+.|+..-..+
T Consensus 198 G~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~ 236 (475)
T PRK14478 198 GEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASA 236 (475)
T ss_pred eCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhc
Confidence 654433578899999999999999888888876554443
No 279
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=27.01 E-value=3.4e+02 Score=26.59 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=61.3
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQ 168 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~ 168 (447)
+|.-....+.+++.+. .+|+++|.-+..- ... -...-....+.+...|+.+....... .|....+..++
T Consensus 117 ~~~~~~~~~~~~~~l~-~~g~~~v~~l~~~------~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~ 188 (336)
T cd06326 117 RASYADEIAAIVRHLV-TLGLKRIAVFYQD------DAF-GKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLA 188 (336)
T ss_pred CCChHHHHHHHHHHHH-HhCCceEEEEEec------Ccc-hHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHH
Confidence 4556667777887775 4676666554221 110 00111122344556677666554433 36778888888
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.+.|++|+.+ ++. .+..+.+.+++.|++++++++
T Consensus 189 ~~~~dav~~~~-~~~--~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 189 AARPQAVIMVG-AYK--AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred hcCCCEEEEEc-CcH--HHHHHHHHHHhcCCCCcEEEE
Confidence 88899887766 332 234455777888988777764
No 280
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=26.99 E-value=1.4e+02 Score=29.54 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=39.5
Q ss_pred CCcEEEEEecCCccchHHHHHhhccCCc---cEEecCCCCCCcchhhhHHHHHHHHHhhC--CcEEEEEecCC
Q 042534 245 VNGIGLVKLMGRSTGHIALHATLSSRDV---DCCLIPEMEFYLEGKGGLVEFLDNRLKEN--GHAVLVVAEGA 312 (447)
Q Consensus 245 ~~~v~iVevMGR~sG~lAl~aaLA~~~a---d~ilIPE~~f~le~~~~l~~~i~~r~~~k--~~~vIvvaEGa 312 (447)
+.++.++|+ ..||+.+.|++-...+ .++|+|+.|- ...+.|+++++++ .+.=|+++.-.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~ 151 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTN 151 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 567888887 6799988888863212 3789999754 5777888877642 24444555443
No 281
>PLN02803 beta-amylase
Probab=26.99 E-value=4.3e+02 Score=29.28 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCCc--HHHHHHHHHHHHHcCCcceEe----------------eecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDGT--MRGAVEIFDEIQRRKINVGVV----------------GIPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--GdgS--~~~A~~L~~~~~~~~~~i~VV----------------gIPkTI--- 210 (447)
++.=+..||..|+|++.+ += |.+- -.+-.+|++.+++.|+++.+| -+|+-+
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~ 188 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE 188 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566788899999999864 33 3333 456678999999999998775 266654
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhcC-CcEEEEEe
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESAV-NGIGLVKL 253 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~~-~~v~iVev 253 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-...- .-|.=|++
T Consensus 189 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~V 252 (548)
T PLN02803 189 MSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQV 252 (548)
T ss_pred hhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEe
Confidence 449999986 88888 789999999999998876632 23444444
No 282
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=26.73 E-value=1.6e+02 Score=30.58 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=57.5
Q ss_pred EEEEccCCCCccHH-HHHHHHHHHHHHhcCCeEEEEEcccccc-cccCCCCeEECChhhhhch-------hccCCc--cc
Q 042534 83 AAIVTCGGLCPGLN-TVIRELVVGLWELYGVRQILGIQAGYRG-FYSTTRNPLVLNPKMVRGW-------HKLGGT--VL 151 (447)
Q Consensus 83 iaIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~~V~Gi~~G~~G-L~~~~~~~~~L~~~~v~~i-------~~~GGt--~L 151 (447)
|+|+++ ..|++. +=|.++++.+...++..-|.--..||.| -.... +-..-...++.+ .....+ +|
T Consensus 91 i~v~~t--C~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G--~~~a~~al~~~l~~~~~~~~~~~~~VNii 166 (406)
T cd01967 91 IFVYST--CPTGLIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQSLG--HHIANDAILDHLVGTKEPEEKTPYDVNII 166 (406)
T ss_pred EEEECC--CchhhhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHH--HHHHHHHHHHHhcCCCCcCCCCCCeEEEE
Confidence 555553 344443 3377777777656675433333478887 22111 000000000000 012233 55
Q ss_pred cccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 152 ETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
|......|..++.+-|++.||+...++.|+.|+..-.++
T Consensus 167 g~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~ 205 (406)
T cd01967 167 GEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRA 205 (406)
T ss_pred eccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhC
Confidence 554333488999999999999999999998886654443
No 283
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.53 E-value=3.3e+02 Score=28.86 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc
Q 042534 79 KNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF 158 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~ 158 (447)
+.+||.||-+||- =++.++.+. +.-.+.++|....-. |..... .. ... .=...
T Consensus 3 ~~~kvLviG~g~r---ehal~~~~~----~~~~~~~~~~~pgn~-g~~~~~--~~--------------~~~---~~~~~ 55 (426)
T PRK13789 3 VKLKVLLIGSGGR---ESAIAFALR----KSNLLSELKVFPGNG-GFPDDE--LL--------------PAD---SFSIL 55 (426)
T ss_pred CCcEEEEECCCHH---HHHHHHHHH----hCCCCCEEEEECCch-HHhccc--cc--------------ccc---CcCcC
Confidence 4589999999884 355555553 322345788765311 221100 00 000 00113
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
|.+++++.+++++||.+++-+-+....+ +++.+++.| ++++|-.
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~l~~g---lad~~~~~G--ip~~Gp~ 99 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDPLVAG---FADWAAELG--IPCFGPD 99 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchHHHHH---HHHHHHHcC--CCcCCCH
Confidence 6788888889999997775333333333 334344444 4455433
No 284
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=26.46 E-value=4.2e+02 Score=26.13 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=42.2
Q ss_pred chhccCCccccccCCc---ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 142 GWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 142 ~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+...|+.+..+.+.. .|+...+..|++.+.|.+|+.+... .+..+.+++++.|++.++++.
T Consensus 164 ~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 228 (345)
T cd06338 164 KAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP---DAVLLVRQMKELGYNPKALYM 228 (345)
T ss_pred HHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch---hHHHHHHHHHHcCCCCCEEEE
Confidence 3445667777655433 4788899999999999888766544 334455777778877666644
No 285
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=26.43 E-value=5.7e+02 Score=24.37 Aligned_cols=23 Identities=4% Similarity=-0.126 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDG 182 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdg 182 (447)
..+.++.|...++|++++...+.
T Consensus 49 ~~~~i~~l~~~~vDgiIv~~~~~ 71 (280)
T cd06303 49 QSQQLNEALQSKPDYLIFTLDSL 71 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCch
Confidence 45677888899999999987654
No 286
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=26.35 E-value=5.7e+02 Score=24.28 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=50.5
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
+||++...-.-|-...+++++.+.+. .+|+ ++. +-++.......
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~-~~g~-~~~----------------------------------~~~~~~~~~~~ 44 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAK-EKGF-TVV----------------------------------KIDVPDGEKVL 44 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHH-HcCC-EEE----------------------------------EccCCCHHHHH
Confidence 47777765556778888888888774 4553 121 00111112234
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.++.+...++|++++.+-|... ...+.+++.+. +|+||.+
T Consensus 45 ~~i~~~~~~~~dgiii~~~~~~~--~~~~~~~~~~~--~iPvV~~ 85 (289)
T cd01540 45 SAIDNLGAQGAKGFVICVPDVKL--GPAIVAKAKAY--NMKVVAV 85 (289)
T ss_pred HHHHHHHHcCCCEEEEccCchhh--hHHHHHHHHhC--CCeEEEe
Confidence 67777889999999999876322 12233444444 5667754
No 287
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=26.21 E-value=3.2e+02 Score=28.82 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCEEEEecCCCcHH--HHHHHHHHHHHcCCcceEeeecccccccccCcCcccCh----hhHHHHHHHHHHHHHHhhhhcC
Q 042534 172 FNQVYIIGGDGTMR--GAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGF----QTAVEMAQQAISAAHVEAESAV 245 (447)
Q Consensus 172 Id~L~vIGGdgS~~--~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GF----dTAv~~~~~ai~~i~~~A~S~~ 245 (447)
.-.+++.||-++.+ .-..+++.+.++|+.+-++=.|. .-.|.++ ++. .....+++.+.....-.+
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG--------~G~s~~~~~~~d~~-~~~~avld~l~~~~~vd~ 264 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPS--------VGFSSKWKLTQDSS-LLHQAVLNALPNVPWVDH 264 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCC--------CCCCCCCCccccHH-HHHHHHHHHHHhCcccCc
Confidence 34688899988754 23345677778887654443443 3223222 221 112233444432221123
Q ss_pred CcEEEE-EecCCccchHHHHHhhc
Q 042534 246 NGIGLV-KLMGRSTGHIALHATLS 268 (447)
Q Consensus 246 ~~v~iV-evMGR~sG~lAl~aaLA 268 (447)
++++++ -.|| |++|+.++..
T Consensus 265 ~ri~l~G~S~G---G~~Al~~A~~ 285 (414)
T PRK05077 265 TRVAAFGFRFG---ANVAVRLAYL 285 (414)
T ss_pred ccEEEEEEChH---HHHHHHHHHh
Confidence 466654 3444 7888877654
No 288
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=26.21 E-value=1.3e+02 Score=27.94 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=34.7
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|..-=-+++..+|+.. ++++++=|..-.+|. ...+.+.+.+.+..++..||+++-
T Consensus 127 ~lS~G~~qrv~laral~~~-p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh 186 (204)
T cd03250 127 NLSGGQKQRISLARAVYSD-ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186 (204)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeC
Confidence 3444444567888899987 999999775445553 223444333333334677777753
No 289
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=26.15 E-value=1.4e+02 Score=28.58 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=36.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|- ...+.+.|++..++++.+||+++-
T Consensus 153 ~LS~G~~qrl~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 212 (236)
T cd03267 153 QLSLGQRMRAEIAAALLHE-PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212 (236)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3444455567888899997 999999776555553 234444454433344677777753
No 290
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=26.07 E-value=5.6e+02 Score=24.10 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc--CcccChhh--HHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII--DRSFGFQT--AVEMAQQAIS 235 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t--D~s~GFdT--Av~~~~~ai~ 235 (447)
..+.++.+...++|++++.+.+-+.. ....+.+.+. +++||.+ |++.... +.++|.|- +.+.+++.+
T Consensus 45 ~~~~i~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~--~ipvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~~l- 115 (270)
T cd06308 45 QVADIENFIRQGVDLLIISPNEAAPL--TPVVEEAYRA--GIPVILL----DRKILSDKYTAYIGADNYEIGRQAGEYI- 115 (270)
T ss_pred HHHHHHHHHHhCCCEEEEecCchhhc--hHHHHHHHHC--CCCEEEe----CCCCCCccceEEeecCcHHHHHHHHHHH-
Confidence 45667778889999999987663311 1222333344 4556644 3332211 12344442 333333333
Q ss_pred HHHHhhhhcCCcEEEEEe-c------CCccchHHHHHhhccC-CccEEecCCCCCCcchhhhHHHHHHHHHhh
Q 042534 236 AAHVEAESAVNGIGLVKL-M------GRSTGHIALHATLSSR-DVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300 (447)
Q Consensus 236 ~i~~~A~S~~~~v~iVev-M------GR~sG~lAl~aaLA~~-~ad~ilIPE~~f~le~~~~l~~~i~~r~~~ 300 (447)
...... |+++.++-- . -|..||.. +++.. +.++....+..++.+ .-.+.+++.++.
T Consensus 116 --~~~~~g-~~~i~~l~~~~~~~~~~~R~~g~~~---~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 179 (270)
T cd06308 116 --ANLLPG-KGNILEIWGLEGSSPAIERHDGFKE---ALSKYPKIKIVAQQDGDWLKE---KAEEKMEELLQA 179 (270)
T ss_pred --HHHcCC-CceEEEEECCCCCchHHHHHHHHHH---HHHHCCCCEEEEecCCCccHH---HHHHHHHHHHHh
Confidence 222123 677888741 1 13445544 33433 244433334344433 233455555544
No 291
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.05 E-value=1.2e+02 Score=29.96 Aligned_cols=48 Identities=6% Similarity=0.175 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.++.++.+++.|++++++- |-....+..+.+.+++.|+..-.+.-|.|
T Consensus 104 ~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5889999999999999998 77888888899999999988766777777
No 292
>PLN02801 beta-amylase
Probab=25.99 E-value=4.4e+02 Score=28.96 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCC--cHHHHHHHHHHHHHcCCcceEe----------------eecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDG--TMRGAVEIFDEIQRRKINVGVV----------------GIPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--Gdg--S~~~A~~L~~~~~~~~~~i~VV----------------gIPkTI--- 210 (447)
++.=+..||..|++++.+ += |.+ --.+-.+|++.+++.|+++.+| -+|+-+
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~ 118 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDV 118 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566678899999999864 32 343 3456678999999999998765 366664
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhcCC--cEEEEEe
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESAVN--GIGLVKL 253 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~~~--~v~iVev 253 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-...-. -|.=|++
T Consensus 119 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~V 183 (517)
T PLN02801 119 GDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEV 183 (517)
T ss_pred hccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEE
Confidence 348999985 77887 7899999999999988766332 3444454
No 293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.98 E-value=1.5e+02 Score=27.87 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=38.0
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|..-=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+..||+++-
T Consensus 131 ~LSgG~~qrl~la~al~~~-p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 131 QLSGGMRQRVALARALAVD-PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred cCCHHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4555555678889999996 99999877544444 2334555565544445677887763
No 294
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=25.73 E-value=5.8e+02 Score=25.25 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcC
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRK 198 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~ 198 (447)
..+.+.+.++++++|.++. +-|........+.+.+.+.|
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g 95 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIG 95 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcC
Confidence 3678888899999997654 55555555555556665554
No 295
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.67 E-value=1.2e+02 Score=31.75 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred EEEEccCCCCccHH-HHHHHHHHHHHHhcCCe------EE--EEEcccccccccCCCCe-EECChhhhhc-hhccCCccc
Q 042534 83 AAIVTCGGLCPGLN-TVIRELVVGLWELYGVR------QI--LGIQAGYRGFYSTTRNP-LVLNPKMVRG-WHKLGGTVL 151 (447)
Q Consensus 83 iaIvtsGG~~PGlN-~vIr~vv~~~~~~~~~~------~V--~Gi~~G~~GL~~~~~~~-~~L~~~~v~~-i~~~GGt~L 151 (447)
-+||++||==|=+| ..+..+++.+....|.+ .| .|+-.+++-|.+.+..+ ..++-...+. .+. .+.
T Consensus 162 ~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~---~l~ 238 (356)
T PRK14462 162 VNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRS---ELM 238 (356)
T ss_pred CCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHH---HhC
Confidence 38999988889999 66777777775444542 12 45555655555443101 1111111111 111 123
Q ss_pred cccCCcccHHHHHHHHHHcC--------CCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccCh
Q 042534 152 ETSRGGFDLHQIVDAIQTNA--------FNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGF 223 (447)
Q Consensus 152 GssR~~~~~~~iv~~l~~~~--------Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GF 223 (447)
+.++. ..+++++++++.+- |.+.++=|=|+|...|.+|++.++..+ ..|=-|| -|++++.++
T Consensus 239 pv~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIP---yn~~~~~~~---- 308 (356)
T PRK14462 239 PINKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLIL---FNPHEGSKF---- 308 (356)
T ss_pred CCCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEe---CCCCCCCCC----
Confidence 33332 34566777665432 677888888999999999999987554 4454455 244444332
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCcEEEEEecCCc
Q 042534 224 QTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRS 257 (447)
Q Consensus 224 dTAv~~~~~ai~~i~~~A~S~~~~v~iVevMGR~ 257 (447)
.+--.. .+.....-..+..-.+.+-+.+|++
T Consensus 309 ~~ps~e---~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 309 ERPSLE---DMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCHH---HHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 221111 1222222222323356777888875
No 296
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.58 E-value=2.8e+02 Score=23.40 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.1
Q ss_pred HHcCCCEEEEecCCC-cHHHHHHHHHHHHHcC-CcceE
Q 042534 168 QTNAFNQVYIIGGDG-TMRGAVEIFDEIQRRK-INVGV 203 (447)
Q Consensus 168 ~~~~Id~L~vIGGdg-S~~~A~~L~~~~~~~~-~~i~V 203 (447)
..++++-++.||-+| |-.-...|.+.++++. .++.|
T Consensus 12 ~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkv 49 (95)
T TIGR00253 12 KAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKV 49 (95)
T ss_pred HhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 468899999999999 5555678888888887 45443
No 297
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=25.49 E-value=1.5e+02 Score=28.61 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=37.6
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.|| ....+.+.|++..++.+..+|+++-
T Consensus 146 ~LS~G~~qrv~laral~~~-p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 205 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMR-PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205 (252)
T ss_pred hcCHHHHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4445555568899999997 99988866544444 2334555566544444677888764
No 298
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.45 E-value=1.3e+02 Score=29.63 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=37.2
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.|++..++.+.+||+++-
T Consensus 143 ~LS~G~~qrv~laral~~~-P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVE-PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred cCCHHHHHHHHHHHHHHcC-CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3444444567889999997 99999977554454 2334555555433344778888764
No 299
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.43 E-value=1.7e+02 Score=28.73 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=47.0
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
.|+.++ || .|+ ++..+++.+...|+ .+|.|.++||-. .+ -..+.++.|...+--+|=.+=+.+..
T Consensus 106 ~~v~ll--G~-~~~---v~~~a~~~l~~~y~-l~i~g~~~Gyf~---~~-----e~~~i~~~I~~s~~dil~VglG~PkQ 170 (243)
T PRK03692 106 TPVFLV--GG-KPE---VLAQTEAKLRTQWN-VNIVGSQDGYFT---PE-----QRQALFERIHASGAKIVTVAMGSPKQ 170 (243)
T ss_pred CeEEEE--CC-CHH---HHHHHHHHHHHHhC-CEEEEEeCCCCC---HH-----HHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 456555 44 455 33444444445675 589999998853 11 02335677776665544333333334
Q ss_pred HHHHH-HHHHcCCCEEEEecC
Q 042534 161 HQIVD-AIQTNAFNQVYIIGG 180 (447)
Q Consensus 161 ~~iv~-~l~~~~Id~L~vIGG 180 (447)
|..+. +...++...++.+||
T Consensus 171 E~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 171 EIFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHHhCCCCEEEEeCe
Confidence 44433 344557777788887
No 300
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=25.30 E-value=35 Score=30.11 Aligned_cols=63 Identities=24% Similarity=0.480 Sum_probs=43.0
Q ss_pred hhhchhccCCccccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 139 MVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 139 ~v~~i~~~GGt~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+..|...||.+..=+=++..++++.+.+++.+=+.|+|+|+.---.-...+|+ ++++|-.=|
T Consensus 16 ~i~~wK~~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~AD------yNVaVgnQP 78 (120)
T PF01994_consen 16 YIREWKEKGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELAD------YNVAVGNQP 78 (120)
T ss_dssp HHHC----SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSS------EEEESSSS-
T ss_pred HHHHhcccCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCC------cceeeCCCC
Confidence 577888889988777777788999999999899999999999988887787775 466554444
No 301
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=25.29 E-value=3.8e+02 Score=28.66 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCcHHHHH-HHHHHHHHcCCcceEeee
Q 042534 171 AFNQVYIIGGDGTMRGAV-EIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 171 ~Id~L~vIGGdgS~~~A~-~L~~~~~~~~~~i~VVgI 206 (447)
+.|++||.=|=+||.-.. .|+-.+ +...+||-.
T Consensus 152 ~~dGvVVtHGTDTM~yTA~aLs~~l---~~~kPVVlT 185 (419)
T PRK04183 152 GADGVVVAHGTDTMHYTAAALSFML---KTPVPIVFV 185 (419)
T ss_pred cCCeEEEecCCchHHHHHHHHHHhc---CCCCCEEEe
Confidence 799999999999988654 454333 345566643
No 302
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=25.22 E-value=1.5e+02 Score=28.07 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=38.6
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.|++..+.++.+||+++-
T Consensus 129 ~LS~G~~qrv~laral~~~-p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 129 QLSGGQRQRVALARCLVRE-QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 5556666678889999997 99999966544444 3334556666544445677887763
No 303
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.20 E-value=6.5e+02 Score=26.48 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHH---HHHHHHHHHHc---CCcceEeeecccccccccCcCcccChhhHHHHHHHH
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRG---AVEIFDEIQRR---KINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQA 233 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~---A~~L~~~~~~~---~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~a 233 (447)
+.|.+.+++++-+.++++..--+-.- ...+.++++++ ..+++||.++- .+..+ .+.-||+.|++...+.
T Consensus 71 ~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~g-~~~~G~~~a~~al~~~ 145 (428)
T cd01965 71 EALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFKG-SHETGYDNAVKAIIEQ 145 (428)
T ss_pred HHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCCC-cHHHHHHHHHHHHHHH
Confidence 45555667789999999886555322 23344555443 34677777643 22222 3456777777766553
No 304
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=25.01 E-value=56 Score=32.37 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
...++++.++..+.|.++-+||--.+.-+...+.+ .+++.+.||-+..||=.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDGF 114 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEeccccccccc
Confidence 35677777878899999999996555555555543 37889999999988854
No 305
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.00 E-value=1.6e+02 Score=27.66 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=37.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+|- ...+.+.|++..++.+.+||+++-
T Consensus 131 ~LS~G~~qr~~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHR-PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5555566678899999997 999888775444542 234455555443334677887754
No 306
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=24.96 E-value=1.6e+02 Score=27.52 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=36.3
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|...=-+++..+|+.. ++++++=|..-.||- ...+.+.|++..++.+.+||+++
T Consensus 141 ~LS~G~~qrv~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 141 ELSGGERQRVAIARALVNQ-PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred hCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3445555678889999986 999988775444542 33455555544344467777775
No 307
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.88 E-value=1.5e+02 Score=28.23 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=35.9
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+.+||+++-
T Consensus 136 ~LS~G~~qrl~la~al~~~-p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 136 QLSGGQRQRVALARALAVE-PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3444444568889999997 99999877444444 2334555555443334667777763
No 308
>PLN02705 beta-amylase
Probab=24.78 E-value=4.7e+02 Score=29.52 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCCc--HHHHHHHHHHHHHcCCcceEe----------------eecccccc-
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDGT--MRGAVEIFDEIQRRKINVGVV----------------GIPKTVDN- 212 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--GdgS--~~~A~~L~~~~~~~~~~i~VV----------------gIPkTIDN- 212 (447)
++.=+..||..|+|++.+ += |.+- ..+-.+|++.+++.|+++.+| -+|+-+-+
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 349 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEI 349 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHh
Confidence 456677899999999864 33 3333 456678999999999998876 27776543
Q ss_pred -----cccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhcC-C-cEEEEEecCCccch
Q 042534 213 -----DVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESAV-N-GIGLVKLMGRSTGH 260 (447)
Q Consensus 213 -----Di~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~~-~-~v~iVevMGR~sG~ 260 (447)
||.+||+ |+|.| |+++...+...+.+.+-...- . -|.=|++=..-||-
T Consensus 350 g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GE 421 (681)
T PLN02705 350 GKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGE 421 (681)
T ss_pred cccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCcc
Confidence 8999985 88888 678999999999988876631 2 34555554444443
No 309
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.78 E-value=1.5e+02 Score=28.09 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=36.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+|- ...+.+.|++..++.+.+||+++-
T Consensus 144 ~LS~G~~qrv~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQ-PKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4445455568889999987 999998775444542 234445555433344677887764
No 310
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.72 E-value=2.7e+02 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=26.1
Q ss_pred CceEEEEccCCCCccHHH---HHHHHHHHHHHhcCCeEEEEE
Q 042534 80 NTRAAIVTCGGLCPGLNT---VIRELVVGLWELYGVRQILGI 118 (447)
Q Consensus 80 ~~kiaIvtsGG~~PGlN~---vIr~vv~~~~~~~~~~~V~Gi 118 (447)
++||||++ ||+.|=... ..+.+..+|. ..|. ++.-+
T Consensus 4 ~~~v~~~~-g~~~~~~~~~~~s~~~i~~al~-~~g~-~v~~i 42 (304)
T PRK01372 4 FGKVAVLM-GGTSAEREVSLNSGAAVLAALR-EAGY-DAHPI 42 (304)
T ss_pred CcEEEEEe-CCCCCCceEeHHhHHHHHHHHH-HCCC-EEEEE
Confidence 35799777 788888888 7777888874 4664 56554
No 311
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.64 E-value=5.8e+02 Score=23.80 Aligned_cols=115 Identities=8% Similarity=0.118 Sum_probs=65.5
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
|||+...=+.|..+.++.++-+.+. .+|+. +.-+ . +........+
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~-~~g~~-~~~~--------~-------------------------~~~~~~~~~~ 46 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELY-KKGYK-LILC--------N-------------------------SDNDPEKERE 46 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHH-HCCCe-EEEe--------c-------------------------CCccHHHHHH
Confidence 7888877678899999999988774 45642 2210 0 0111112356
Q ss_pred HHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--hHHHHHHHHHHHHHHh
Q 042534 163 IVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQQAISAAHVE 240 (447)
Q Consensus 163 iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~~ai~~i~~~ 240 (447)
.++.+...++|++++.+.|...+ ++.+. +++||.+=...++++ .++|.| .+...+++. +..
T Consensus 47 ~i~~~~~~~~dgiii~~~~~~~~-------~~~~~--gipvv~~~~~~~~~~----~~V~~d~~~~g~~~~~~---l~~- 109 (265)
T cd06291 47 YLEMLRQNQVDGIIAGTHNLGIE-------EYENI--DLPIVSFDRYLSENI----PIVSSDNYEGGRLAAEE---LIE- 109 (265)
T ss_pred HHHHHHHcCCCEEEEecCCcCHH-------HHhcC--CCCEEEEeCCCCCCC----CeEeechHHHHHHHHHH---HHH-
Confidence 77888999999999998764421 22233 566775544444333 334544 333333333 322
Q ss_pred hhhcCCcEEEE
Q 042534 241 AESAVNGIGLV 251 (447)
Q Consensus 241 A~S~~~~v~iV 251 (447)
.. ++++.++
T Consensus 110 -~g-~~~i~~i 118 (265)
T cd06291 110 -RG-CKHIAHI 118 (265)
T ss_pred -cC-CcEEEEE
Confidence 13 5667666
No 312
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.53 E-value=1.9e+02 Score=29.20 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=44.8
Q ss_pred chhccCCccccccCCc---ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 142 GWHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 142 ~i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
.+...|+.+.+..+.. .|+...+..+++-+-|.+|++ +.++ .+..+.+.+++.|++.+++++
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~--~~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPP--DFATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCcc--HHHHHHHHHHHCCCCCCeEEE
Confidence 3445788888777754 478999999999999997654 4444 244466777888888777654
No 313
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=24.49 E-value=2.3e+02 Score=30.95 Aligned_cols=88 Identities=25% Similarity=0.296 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhh---------hcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHH
Q 042534 222 GFQTAVEMAQQAISAAHVEAE---------SAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVE 292 (447)
Q Consensus 222 GFdTAv~~~~~ai~~i~~~A~---------S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~ 292 (447)
|=.|++++.+.-.+-=+.+|+ |+.+-|-|-.+-|..-.-+|+ |-||.+.+|++++-|..-.||= .-++
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal-aeLal~~PDvlILDEPTNNLDI--ESID 741 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL-AELALGGPDVLILDEPTNNLDI--ESID 741 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH-HHHhcCCCCEEEecCCCCCcch--hhHH
Confidence 345677776655443344443 333467788888887777765 5666667999888775444431 1344
Q ss_pred HHHHHHhhCCcEEEEEecCC
Q 042534 293 FLDNRLKENGHAVLVVAEGA 312 (447)
Q Consensus 293 ~i~~r~~~k~~~vIvvaEGa 312 (447)
.+.+.+.+-+-+||+|+--.
T Consensus 742 ALaEAIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 742 ALAEAINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHHHHHhccCcEEEEeccc
Confidence 55555566667788887543
No 314
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=24.42 E-value=1.5e+02 Score=28.73 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=37.9
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEecC
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAEG 311 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaEG 311 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++++.+||+++.-
T Consensus 152 ~LS~G~~qrv~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQ-AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred ccCHHHHHHHHHHHHHhcC-CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4555555668888999987 99988866544444 33345555554434457788888653
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=24.36 E-value=1.7e+02 Score=26.58 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=36.3
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++++..+|+++.
T Consensus 97 ~LS~G~~qrl~laral~~~-p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 97 ELSGGERQRVLLARALAQE-PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4555555668889999996 99999876544454 2334445554332333667777764
No 316
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.34 E-value=6e+02 Score=23.92 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=51.0
Q ss_pred eEEEEccCC-CCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-cc
Q 042534 82 RAAIVTCGG-LCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FD 159 (447)
Q Consensus 82 kiaIvtsGG-~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~ 159 (447)
|||+++-.- .-|-.+..+.++-+.+. .+|+ .+.- ..+.... ..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~-~~g~-~v~~---------------------------------~~~~~~~~~~ 45 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAK-DLGV-DVEY---------------------------------RGPETFDVAD 45 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHH-HhCC-EEEE---------------------------------ECCCCCCHHH
Confidence 578877654 56888888888888774 3443 1211 1111111 22
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
..+.++.|...++|++++.+.+.+... ..+ +.+.++ +++||.+
T Consensus 46 ~~~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~--~ipvV~~ 88 (271)
T cd06312 46 MARLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAA--GIPVISF 88 (271)
T ss_pred HHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHC--CCeEEEe
Confidence 456788888899999999987653211 122 334444 4667765
No 317
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.33 E-value=1.7e+02 Score=27.75 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=37.2
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|- ...+.+.|++..++.+.+||+++-
T Consensus 140 ~LS~G~~qrv~la~al~~~-p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 140 QLSGGQKQRVGIARALANN-PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4444455568889999986 999998775444552 234555555544444778887763
No 318
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.32 E-value=5.1e+02 Score=24.97 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEecCC---------CcHHHHHHHHHHHHHcCCcceEeeec
Q 042534 158 FDLHQIVDAIQTNAFNQVYIIGGD---------GTMRGAVEIFDEIQRRKINVGVVGIP 207 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~vIGGd---------gS~~~A~~L~~~~~~~~~~i~VVgIP 207 (447)
.+++++++.++++|++++=+-..+ =+...+..|.+.+++.|+.++.++.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~ 74 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLS 74 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecc
Confidence 357999999999999998553321 13445777888888899887766544
No 319
>PLN02735 carbamoyl-phosphate synthase
Probab=24.29 E-value=3.4e+02 Score=32.69 Aligned_cols=107 Identities=13% Similarity=0.215 Sum_probs=58.1
Q ss_pred CCceEEEEccCCCCcc----HHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCcccccc
Q 042534 79 KNTRAAIVTCGGLCPG----LNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETS 154 (447)
Q Consensus 79 ~~~kiaIvtsGG~~PG----lN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGss 154 (447)
..+||.|+-+|...-| .-.+=.+++++|+ ..|+ +|+.+..--. .+-.+....+.. .+.
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk-e~G~-~Vi~vd~np~--------t~~~~~~~aD~~------yi~-- 83 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALK-EEGY-EVVLINSNPA--------TIMTDPETADRT------YIA-- 83 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHH-HcCC-EEEEEeCCcc--------cccCChhhCcEE------EeC--
Confidence 3578999999975443 1112223445553 5676 7777642111 111111111111 110
Q ss_pred CCcccHHHHHHHHHHcCCCEEEE-ecCCCcHHHHHHHHH--HHHHcCCcceEeeec
Q 042534 155 RGGFDLHQIVDAIQTNAFNQVYI-IGGDGTMRGAVEIFD--EIQRRKINVGVVGIP 207 (447)
Q Consensus 155 R~~~~~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~~--~~~~~~~~i~VVgIP 207 (447)
+.+.+.+.+.+++.++|+++. +||+-.+..|..|++ .+++ ++++++|.+
T Consensus 84 --p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~--~GI~~~G~~ 135 (1102)
T PLN02735 84 --PMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEK--YGVELIGAK 135 (1102)
T ss_pred --CCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHH--CCCEEECCC
Confidence 113456777789999999995 688887888877763 2333 346666644
No 320
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=24.25 E-value=4e+02 Score=24.87 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=38.1
Q ss_pred hhccCCccccccCCc---ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCC--cceEeee
Q 042534 143 WHKLGGTVLETSRGG---FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKI--NVGVVGI 206 (447)
Q Consensus 143 i~~~GGt~LGssR~~---~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~--~i~VVgI 206 (447)
+...|..+....... .+...+++.+++.+.+++++.+.. ..+..+.+.+++.|+ ++++++.
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 160 FKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 344555555433322 457788888888888988776643 344556677777776 5566653
No 321
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.24 E-value=1.6e+02 Score=26.69 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=35.1
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEe
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvva 309 (447)
+-|...=-+++..+|+.. ++++++=|..-.+|. ...+.+.|++..+ ++..+|+++
T Consensus 96 LS~G~~qrv~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~t 152 (173)
T cd03230 96 LSGGMKQRLALAQALLHD-PELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSS 152 (173)
T ss_pred cCHHHHHHHHHHHHHHcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 334444567889999987 999999776555553 2345555554433 466777765
No 322
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.20 E-value=81 Score=32.83 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=46.3
Q ss_pred cCCCEEEEecCCCcHHH---HHHHHHHHHH-----cCCcceEeeecccccccc-------cCcCcccChhhHHHHHHHHH
Q 042534 170 NAFNQVYIIGGDGTMRG---AVEIFDEIQR-----RKINVGVVGIPKTVDNDV-------GIIDRSFGFQTAVEMAQQAI 234 (447)
Q Consensus 170 ~~Id~L~vIGGdgS~~~---A~~L~~~~~~-----~~~~i~VVgIPkTIDNDi-------~~tD~s~GFdTAv~~~~~ai 234 (447)
..++.+++-||.=|+-. -.+|.+.+++ .+..+.+-.=|.|++.+. ..+--|+|.+|+-....+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 57999999999999743 3445555554 235678888899999876 24456999998876655444
Q ss_pred H
Q 042534 235 S 235 (447)
Q Consensus 235 ~ 235 (447)
.
T Consensus 137 ~ 137 (378)
T PRK05660 137 G 137 (378)
T ss_pred C
Confidence 3
No 323
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.04 E-value=1.7e+02 Score=27.43 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=36.2
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++|+=|.--.+|. ...+.+.|++..++.+..||+++-
T Consensus 145 ~LS~G~~qrv~laral~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 145 ELSGGQRQRVAIARALALN-PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204 (228)
T ss_pred hcCHHHHHHHHHHHHHhcC-CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3444444568888899986 999999775444542 334555555443444677777754
No 324
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=24.03 E-value=1.6e+02 Score=28.32 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=37.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEecC
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAEG 311 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaEG 311 (447)
++-|...=-+++..+|++. ++++++=|.--.||- ...+.+.+++..++.+.+||+++.-
T Consensus 148 ~LSgG~~qrv~laral~~~-p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTR-PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred hcCHHHHHHHHHHHHHhcC-CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3334444457888999997 999998664334442 3345566665445557788888643
No 325
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.97 E-value=3.7e+02 Score=32.13 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHcCCCEEEE-ecCCCcHHHHHHHHHHHHHcCCcceEeee-cccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYI-IGGDGTMRGAVEIFDEIQRRKINVGVVGI-PKTVDN 212 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~v-IGGdgS~~~A~~L~~~~~~~~~~i~VVgI-PkTIDN 212 (447)
+.+.+.+.+++.++|++++ +||+-.. .+++.+++. +++++|- |.+|+.
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~--Gi~ilg~s~~ai~~ 666 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAA--GVPILGTSPDAIDL 666 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHC--CCceeCCCHHHHHH
Confidence 5788899999999999887 6766544 345555554 4556664 467653
No 326
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=23.94 E-value=1.6e+02 Score=27.95 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=36.8
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+..||+++-
T Consensus 145 ~LSgG~~qrv~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQ-PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4555555568889999986 99988866433444 2334555555443444677777753
No 327
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=50 Score=28.03 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=26.5
Q ss_pred EecCCccccccCCCCceEEEEccCCCCccHHHHHHHH
Q 042534 66 HRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIREL 102 (447)
Q Consensus 66 ~~agpr~~~~f~p~~~kiaIvtsGG~~PGlN~vIr~v 102 (447)
.--||-.++||.....-+-++.|||+-.==-.-|+..
T Consensus 55 Id~GpGyRvY~~~~g~v~i~lLCgGdks~q~~di~~a 91 (100)
T COG3657 55 IDHGPGYRVYFQQRGLVLILLLCGGDKSTQARDIRKA 91 (100)
T ss_pred eccCCceEEEEEecCcEEEEEeccCchhhHHhhHHHH
Confidence 4578999999987666677788999976444334333
No 328
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=23.83 E-value=2.3e+02 Score=30.43 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=59.6
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhc-CCeEEEEEc-ccccccccCCCCeEECC----hhhhhch---hccCCc--
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELY-GVRQILGIQ-AGYRGFYSTTRNPLVLN----PKMVRGW---HKLGGT-- 149 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~-~~~~V~Gi~-~G~~GL~~~~~~~~~L~----~~~v~~i---~~~GGt-- 149 (447)
.-|+|+++ ..+-=+-+=|.++++.+...+ +. .|+.+. .||.|-..... +.... .+.+..+ ....++
T Consensus 129 ~~I~V~tT-C~~elIGDDi~~v~~~~~~~~~~~-~vi~v~tpgf~g~s~~~G-~~~a~~~~~~~~v~~~~~~~~~~~~VN 205 (461)
T TIGR01860 129 KRMIVYTT-CPTALIGDDIKAVAKKVQKELPDV-DIFTVECPGFAGVSQSKG-HHVLNIGWINEKVGTLEPEITSEYTIN 205 (461)
T ss_pred CEEEEEcc-CchhhhcCCHHHHHHHHHHhcCCC-cEEEEeCCCcCCcccchH-HHHHHHHHHHHHhcccCCCCCCCCcEE
Confidence 33677663 233334445777887776666 34 455554 78887322110 00000 0001000 011233
Q ss_pred cccccCCcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHH
Q 042534 150 VLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEI 190 (447)
Q Consensus 150 ~LGssR~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L 190 (447)
+||.....-|..++.+-|++.||+.+..+.|+.|+..-..+
T Consensus 206 iiG~~~~~gd~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~~ 246 (461)
T TIGR01860 206 VIGDYNIQGDTQVLQKYWDKMGIQVIAHFTGNGTYDDLRCM 246 (461)
T ss_pred EECCCCCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHhc
Confidence 56644444578999999999999999889998887654443
No 329
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=23.61 E-value=6.3e+02 Score=23.89 Aligned_cols=87 Identities=8% Similarity=-0.083 Sum_probs=48.9
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLH 161 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~ 161 (447)
||||+...-.-|-...+++++-..+. .+|+. +.-. +. +.........
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~-~~g~~-~~~~-----------------~~--------------~~~~~~~~~~ 47 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAK-RLGVS-LKLL-----------------EA--------------GGYPNLAKQI 47 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHH-HcCCE-EEEe-----------------cC--------------CCCCCHHHHH
Confidence 57888866556777777777777663 44531 2110 00 0001111244
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.++.+...++|++++.+.+.+.. . .+ ++++++ +|+||.+
T Consensus 48 ~~i~~~~~~~vdgiI~~~~~~~~~-~-~~-~~~~~~--giPvV~~ 87 (268)
T cd06306 48 AQLEDCAAWGADAILLGAVSPDGL-N-EI-LQQVAA--SIPVIAL 87 (268)
T ss_pred HHHHHHHHcCCCEEEEcCCChhhH-H-HH-HHHHHC--CCCEEEe
Confidence 678888899999999987654322 1 23 334444 4566655
No 330
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=23.58 E-value=1.7e+02 Score=27.16 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=38.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|- ...+.+.|++..++.+.+||+++-
T Consensus 130 ~LS~G~~qr~~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH 189 (213)
T cd03301 130 QLSGGQRQRVALGRAIVRE-PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189 (213)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5556666678899999986 999998775444542 234555555544445677887763
No 331
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.53 E-value=2e+02 Score=30.34 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEc------ccccccccCCCCeEECChhhhhchhccCCc-cccc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQ------AGYRGFYSTTRNPLVLNPKMVRGWHKLGGT-VLET 153 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~------~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt-~LGs 153 (447)
+||+|++ |-+.| +-.-..+++.++.+|+.-+.+|+- .|++-|++-. .+.-+|=+ +|+-
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~------------elsvmGf~EVL~~ 66 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDME------------ELSVMGFVEVLGR 66 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHH------------HHHHhhHHHHHHH
Confidence 5777776 23333 335566888888888867999986 5555554421 12222211 3331
Q ss_pred cC-CcccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 154 SR-GGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 154 sR-~~~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
=. -..-++++++++.+.+.|.|+.|= +..--..+++.+++.+-++++|.-
T Consensus 67 lp~llk~~~~~~~~i~~~kpD~~i~ID---sPdFnl~vak~lrk~~p~i~iihY 117 (381)
T COG0763 67 LPRLLKIRRELVRYILANKPDVLILID---SPDFNLRVAKKLRKAGPKIKIIHY 117 (381)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeC---CCCCchHHHHHHHHhCCCCCeEEE
Confidence 10 011367889999999999999994 444445677777888877777753
No 332
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.48 E-value=3.2e+02 Score=25.06 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEccccc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYR 123 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~ 123 (447)
.++.++ || .|+..+ .+...+.+.|+..+|.|..+||-
T Consensus 49 ~~ifll--G~-~~~~~~---~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLL--GG-SEEVLE---KAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEE--eC-CHHHHH---HHHHHHHHHCCCeEEEEecCCCC
Confidence 445544 44 344443 44445556787779999999876
No 333
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.43 E-value=1.7e+02 Score=27.74 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=36.0
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+.+||+++-
T Consensus 136 ~LSgG~~qrv~ia~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 136 ELSGGMKKRVALARALALD-PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 3444444458888999986 99999877443444 2334555555433334678888763
No 334
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.36 E-value=1.8e+02 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.421 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEee
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVG 205 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVg 205 (447)
+.+++.|+++||+.+|-+=|++.+.-. +.+.+.+ ++.+|.
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~~l~----~al~~~~-~i~~i~ 44 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNLPLL----DALEKSP-GIRFIP 44 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGHHHH----HHHHHTT-TSEEEE
T ss_pred HHHHHHHHHCCCeEEEEEeChhHhHHH----HHhhhhc-ceeeec
Confidence 678999999999999999999986644 4444443 455553
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.34 E-value=1.8e+02 Score=26.37 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=35.8
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++.+.++|+++-
T Consensus 101 lS~G~~qr~~la~al~~~-p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 101 LSGGQQQRVALARALAMD-PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred CCHHHHHHHHHHHHHHCC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 444455568888999997 99988866544444 3334555555443433677877753
No 336
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.28 E-value=9.5e+02 Score=25.81 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=88.1
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH-H
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL-H 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~-~ 161 (447)
+||-.. ||-==.||++..+.+++. +. .-+++-|...|+.. ||. |.=++.|+ +
T Consensus 14 ~Gi~SV---Csahp~VieAAl~~a~~~-~~-----------------pvLiEAT~NQVdq~---GGY---TGmtP~dF~~ 66 (421)
T PRK15052 14 IGICSV---CSAHPLVIEAALAFDLNS-TR-----------------KVLIEATSNQVNQF---GGY---TGMTPADFRE 66 (421)
T ss_pred CceeeE---CCCCHHHHHHHHHHHhhc-CC-----------------cEEEEecccccccc---CCc---CCCCHHHHHH
Confidence 455543 666667999988776432 21 11567788777766 776 44444554 4
Q ss_pred HHHHHHHHcCCCE-EEEecCCC-------------cHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHH
Q 042534 162 QIVDAIQTNAFNQ-VYIIGGDG-------------TMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAV 227 (447)
Q Consensus 162 ~iv~~l~~~~Id~-L~vIGGdg-------------S~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv 227 (447)
-+.+.-++.+++. .+++|||= .|..|..+.+..-+.|++ -|++=.|++ ...-..-+.-+|.+
T Consensus 67 ~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA 142 (421)
T PRK15052 67 FVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVA 142 (421)
T ss_pred HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHH
Confidence 4455567889998 99999982 345555555555566765 677777777 22222456678889
Q ss_pred HHHHHHHHHHHHhhhh--cCCcEEEE
Q 042534 228 EMAQQAISAAHVEAES--AVNGIGLV 251 (447)
Q Consensus 228 ~~~~~ai~~i~~~A~S--~~~~v~iV 251 (447)
+.+++.+...-.++.. ...-+++|
T Consensus 143 ~Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 143 ERAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 9999888866555543 23457777
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.22 E-value=1.8e+02 Score=26.96 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=34.4
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++.+.++|+++-
T Consensus 72 LSgGq~qrv~laral~~~-p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 72 LSGGELQRVAIAAALLRN-ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 444444567888888886 99999866543444 2334555555443333467777753
No 338
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.18 E-value=4.1e+02 Score=26.50 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=24.5
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccc
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRG 124 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~G 124 (447)
++|..+ | -.|| |+..+...+..+|...+|.|.++||-.
T Consensus 109 ~~vfll--G-gkp~---V~~~a~~~l~~~~p~l~ivg~h~GYf~ 146 (253)
T COG1922 109 KRVFLL--G-GKPG---VAEQAAAKLRAKYPGLKIVGSHDGYFD 146 (253)
T ss_pred ceEEEe--c-CCHH---HHHHHHHHHHHHCCCceEEEecCCCCC
Confidence 445544 2 3455 555556666667887799999998753
No 339
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.18 E-value=1.7e+02 Score=27.91 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=35.5
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++++.+||+++-
T Consensus 136 LS~G~~qrv~laral~~~-p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 136 LSGGQQQRVGVARALAAD-PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 334444558888999987 99999866543444 2334555555444444677887753
No 340
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=23.06 E-value=4.4e+02 Score=25.77 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=57.7
Q ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc---ccHHHHHHHHH
Q 042534 92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG---FDLHQIVDAIQ 168 (447)
Q Consensus 92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~---~~~~~iv~~l~ 168 (447)
.|..-...+++++.+.+.++.++|.-+..... + -..+.....+.+...|+.+.+..+.. .|+..++..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~--~-----g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~ 187 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDP--Y-----GRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLK 187 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSH--H-----HHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHH
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCch--h-----hhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHh
Confidence 45555667777777655567666665542211 0 01112223344556677776655433 57899999999
Q ss_pred HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcc
Q 042534 169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINV 201 (447)
Q Consensus 169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i 201 (447)
+.+.|.+++.++ -..+..+.+++.+.++.-
T Consensus 188 ~~~~d~v~~~~~---~~~~~~~~~~~~~~~~~~ 217 (343)
T PF13458_consen 188 SAGPDVVVLAGD---PADAAAFLRQLRQLGLKP 217 (343)
T ss_dssp HTTTSEEEEEST---HHHHHHHHHHHHHTTGCS
T ss_pred hcCCCEEEEecc---chhHHHHHHHHHhhcccc
Confidence 999999666652 223344556666777653
No 341
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=23.02 E-value=69 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHH
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGA 187 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A 187 (447)
.+.++++.+++++++.+.|+..+|.+.|.
T Consensus 17 ~l~~~~~~~~~~~~~~~~V~d~~~~~~G~ 45 (57)
T PF00571_consen 17 SLEEALEIMRKNGISRLPVVDEDGKLVGI 45 (57)
T ss_dssp BHHHHHHHHHHHTSSEEEEESTTSBEEEE
T ss_pred cHHHHHHHHHHcCCcEEEEEecCCEEEEE
Confidence 58999999999999999999988876553
No 342
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=22.89 E-value=1.7e+02 Score=28.53 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEecC
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAEG 311 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaEG 311 (447)
++-|...=-+++..+|+.. ++++++=|.--.|| ....+.+.|++..+..+..||+++.-
T Consensus 150 ~LSgGe~qrv~laral~~~-p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVK-PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4555555668888999986 99999866444444 23345566665444457788888643
No 343
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=22.70 E-value=1.8e+02 Score=27.61 Aligned_cols=58 Identities=29% Similarity=0.303 Sum_probs=37.6
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|- ...+.+.|++..++.+.+||+++-
T Consensus 114 ~LSgG~~qrv~la~al~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH 173 (230)
T TIGR01184 114 QLSGGMKQRVAIARALSIR-PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173 (230)
T ss_pred hCCHHHHHHHHHHHHHHcC-CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4555555668888999997 999999775444552 234445555433445678888864
No 344
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=22.50 E-value=2.2e+02 Score=27.41 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHH-HHHHHHHHHcCCcceEe
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGA-VEIFDEIQRRKINVGVV 204 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A-~~L~~~~~~~~~~i~VV 204 (447)
+..+++.|.++|+..+++|-|=|.+..+ ...++++.++..++.|.
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEE
Confidence 6899999999999999999999987755 34556666663344444
No 345
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.42 E-value=1.9e+02 Score=27.05 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=37.0
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|. ...+.+.|++..++++.+||+++
T Consensus 131 ~LS~G~~qrv~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 131 QLSGGEKQRVALARALAAQ-PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 4555555668889999996 999999885445553 23444555544344467777776
No 346
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=22.40 E-value=1.7e+02 Score=27.68 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=35.2
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++..++.+..||+++-
T Consensus 125 ~LS~G~~qrv~laral~~~-p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLE-PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred hcCHHHHHHHHHHHHHhcC-CCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3444444558888999986 89888866433444 2334455555443334667777754
No 347
>PLN02905 beta-amylase
Probab=22.22 E-value=5.5e+02 Score=29.10 Aligned_cols=100 Identities=22% Similarity=0.338 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCC--cHHHHHHHHHHHHHcCCcceEe----------------eecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDG--TMRGAVEIFDEIQRRKINVGVV----------------GIPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--Gdg--S~~~A~~L~~~~~~~~~~i~VV----------------gIPkTI--- 210 (447)
++.=+..||..|++++.+ += |.+ -..+-.+|++.+++.|+++.+| -+|+-+
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~ 367 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEI 367 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566678899999999864 33 333 3556678999999999998876 266654
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhcC-C-cEEEEEecCCccc
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESAV-N-GIGLVKLMGRSTG 259 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~~-~-~v~iVevMGR~sG 259 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-...- . -|.=|++=..-||
T Consensus 368 g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaG 438 (702)
T PLN02905 368 GRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCG 438 (702)
T ss_pred hhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCc
Confidence 448999985 88888 688999999999998876632 2 3555555443444
No 348
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.22 E-value=2.2e+02 Score=31.58 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=25.4
Q ss_pred CcceEeeecccccccccCcCccc-ChhhHHHHHHHHHHHHHHhhhhcCCcEEEEEec----CCccchHHHHH
Q 042534 199 INVGVVGIPKTVDNDVGIIDRSF-GFQTAVEMAQQAISAAHVEAESAVNGIGLVKLM----GRSTGHIALHA 265 (447)
Q Consensus 199 ~~i~VVgIPkTIDNDi~~tD~s~-GFdTAv~~~~~ai~~i~~~A~S~~~~v~iVevM----GR~sG~lAl~a 265 (447)
..++|||||-... ++ |.| ++....+ ++.++- |=+| |.+++++|+..
T Consensus 487 t~~pvi~vp~~~~--------~~~g~~-----------~l~s~~~-~p~g~p-v~~v~i~~~~~aa~~a~~i 537 (577)
T PLN02948 487 TPLPVIGVPVKTS--------HLDGLD-----------SLLSIVQ-MPRGVP-VATVAIGNATNAGLLAVRM 537 (577)
T ss_pred cCCCEEEcCCCCC--------CCCcHH-----------HHHHHhc-CCCCCe-EEEEecCChHHHHHHHHHH
Confidence 3578888887432 22 333 3333344 366665 5555 66777776554
No 349
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=21.94 E-value=2.1e+02 Score=30.32 Aligned_cols=107 Identities=19% Similarity=0.344 Sum_probs=56.5
Q ss_pred HHHHHHHHHHc-------CCCEEEEecCCCcHHHHH----HHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 160 LHQIVDAIQTN-------AFNQVYIIGGDGTMRGAV----EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 160 ~~~iv~~l~~~-------~Id~L~vIGGdgS~~~A~----~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
++++.+.+.++ ++++ ++|||.|-.+.-- .|..++.+ .|+.+ + |++..+ --|+.-+++
T Consensus 194 ~~~Vae~~~~~f~~~~~~~v~~-IIlaGpg~~K~~f~~~~~l~~~l~~-----kvi~~---v--dvs~gg-~~gl~E~l~ 261 (409)
T TIGR00108 194 LKKVGEVANEAFLPNDDVKLKG-IILGGPGHTKEEFAEGEYLHHELKK-----KVIST---V--DVSYTG-EFGIRELIE 261 (409)
T ss_pred HHHHHHHHHHHhhhcccccceE-EEEeccHHHHHHhhhhhhHHHHhhh-----hEEEE---E--EcCCCc-ccCHHHHHH
Confidence 45666644444 5665 5677777766421 34444432 23322 2 444333 336666666
Q ss_pred HHHHHHHHHHHhhhh-cCCcEEEEEecCCcc-----chHHHHHhhccCCccEEecCCC
Q 042534 229 MAQQAISAAHVEAES-AVNGIGLVKLMGRST-----GHIALHATLSSRDVDCCLIPEM 280 (447)
Q Consensus 229 ~~~~ai~~i~~~A~S-~~~~v~iVevMGR~s-----G~lAl~aaLA~~~ad~ilIPE~ 280 (447)
.+.+.+.+....-.. .-.++ .+-++++. |.=...-||..|.++..||+|.
T Consensus 262 ~~~~~L~~~k~~~E~~lle~F--~~ei~~d~G~avyG~~eV~~ALe~GAVetLLV~d~ 317 (409)
T TIGR00108 262 KSADVLAEVDYMREKKLVQRF--LKELIQEDGLACYGEDEVLKALDLGAVETLIVSED 317 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecc
Confidence 666666554432211 00111 12334444 4445677888888999999985
No 350
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=21.89 E-value=3.1e+02 Score=24.74 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=29.4
Q ss_pred EEEecCCCcHHHH--HHHHHHHHHcCCcceEeeecccccccccCcC-cccChhhHH
Q 042534 175 VYIIGGDGTMRGA--VEIFDEIQRRKINVGVVGIPKTVDNDVGIID-RSFGFQTAV 227 (447)
Q Consensus 175 L~vIGGdgS~~~A--~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD-~s~GFdTAv 227 (447)
+.++|-.||=++. .+|.++++++|+++.+| .+|....+ ...|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi------K~~~~~~~~d~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI------KHDHHDFDIDKNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecccccccCCCccccHHH
Confidence 5677878887775 67888888888775544 44443322 133666554
No 351
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.89 E-value=6.5e+02 Score=23.38 Aligned_cols=131 Identities=13% Similarity=0.045 Sum_probs=72.3
Q ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccHH
Q 042534 83 AAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDLH 161 (447)
Q Consensus 83 iaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~~ 161 (447)
||||...-.-|-.+.++.++-+.+. ..|+. +.- +.+.... .+..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~-~~~~~-~~~---------------------------------~~~~~~~~~~~~ 46 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAR-EAGYA-VTL---------------------------------SMLAEADEEALR 46 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHH-HCCCe-EEE---------------------------------EeCCCCchHHHH
Confidence 7888877777888888888888774 34432 110 1111111 2356
Q ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChh--hHHHHHHHHHHHHHH
Q 042534 162 QIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQ--TAVEMAQQAISAAHV 239 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFd--TAv~~~~~ai~~i~~ 239 (447)
+.++.+.+.++|++++.+-+.... + +.+ +.+. +++||.+=...+.. ..+++.| .|.+.+++.+..
T Consensus 47 ~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~--~ipvv~~~~~~~~~----~~~v~~d~~~~g~~~~~~l~~--- 113 (264)
T cd01574 47 AAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPA--DVPVVFVDGSPSPR----VSTVSVDQEGGARLATEHLLE--- 113 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhc--CCCEEEEeccCCCC----CCEEEeCcHHHHHHHHHHHHH---
Confidence 788889999999999988766554 2 222 2233 46677653333322 2334444 344444444332
Q ss_pred hhhhcCCcEEEEEe-------cCCccchHHHH
Q 042534 240 EAESAVNGIGLVKL-------MGRSTGHIALH 264 (447)
Q Consensus 240 ~A~S~~~~v~iVev-------MGR~sG~lAl~ 264 (447)
.. ++++.++-- +-|..||....
T Consensus 114 --~g-~~~i~~i~~~~~~~~~~~r~~gf~~~l 142 (264)
T cd01574 114 --LG-HRTIAHVAGPEEWLSARARLAGWRAAL 142 (264)
T ss_pred --CC-CCEEEEEecCCccchHHHHHHHHHHHH
Confidence 23 556766621 22445666543
No 352
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.86 E-value=6.5e+02 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
...+.+.+.+.++|++++.+.+.. .. .+.+.++ +++||.+
T Consensus 47 ~~~~~~~l~~~~vdgiii~~~~~~-~~----~~~l~~~--~ipvV~~ 86 (268)
T cd06277 47 EFELPSFLEDGKVDGIILLGGIST-EY----IKEIKEL--GIPFVLV 86 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCh-HH----HHHHhhc--CCCEEEE
Confidence 345677788899999999986543 11 2333444 4667754
No 353
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.84 E-value=8.6e+02 Score=29.19 Aligned_cols=42 Identities=17% Similarity=0.456 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHcCCCEEEEe-cCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 159 DLHQIVDAIQTNAFNQVYII-GGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vI-GGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
+.+.+.+.+++.++|++++- ||. + +..+++.+++.| ++++|-
T Consensus 618 ~~e~vl~I~~~e~~dgVI~~~g~~-~---~~~la~~le~~G--i~ilG~ 660 (1068)
T PRK12815 618 TLEDVLNVAEAENIKGVIVQFGGQ-T---AINLAKGLEEAG--LTILGT 660 (1068)
T ss_pred CHHHHHHHHhhcCCCEEEEecCcH-H---HHHHHHHHHHCC--CeEECC
Confidence 47889999999999998874 443 2 445666666554 445554
No 354
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=21.73 E-value=1e+02 Score=28.99 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=31.4
Q ss_pred HHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHH
Q 042534 166 AIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVE 228 (447)
Q Consensus 166 ~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~ 228 (447)
.+++++.|++|+-||-|+-.......+.+++...+++|.|| |+|++--+.
T Consensus 38 ~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI-------------ClG~Qlla~ 87 (195)
T PRK07649 38 DIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV-------------CLGHQSIAQ 87 (195)
T ss_pred HHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE-------------cHHHHHHHH
Confidence 34567899999999999865543222222222234556655 899886544
No 355
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.65 E-value=2.6e+02 Score=26.05 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=47.3
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL 160 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~ 160 (447)
.++.++ || .|+.++... +.+...|+..+|.|. +||- +.+ -..+.++.|...+-.+|-.+=+.+..
T Consensus 49 ~~vfll--G~-~~~v~~~~~---~~l~~~yP~l~i~g~-~g~f---~~~-----~~~~i~~~I~~s~~dil~VglG~PkQ 113 (177)
T TIGR00696 49 LPIFLY--GG-KPDVLQQLK---VKLIKEYPKLKIVGA-FGPL---EPE-----ERKAALAKIARSGAGIVFVGLGCPKQ 113 (177)
T ss_pred CeEEEE--CC-CHHHHHHHH---HHHHHHCCCCEEEEE-CCCC---ChH-----HHHHHHHHHHHcCCCEEEEEcCCcHh
Confidence 455555 44 555444433 344456877788887 6664 211 12345777777776655444444555
Q ss_pred HHHHHHH-HHcCCCEEEEecC
Q 042534 161 HQIVDAI-QTNAFNQVYIIGG 180 (447)
Q Consensus 161 ~~iv~~l-~~~~Id~L~vIGG 180 (447)
|..+... ..++...++.+||
T Consensus 114 E~~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 114 EIWMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHHHhHHhCCCcEEEEece
Confidence 5554444 4445555666666
No 356
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.64 E-value=4.3e+02 Score=21.19 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=40.2
Q ss_pred EEccCCCCc-cHHHHHHHHHHHHHHhcCCeEE-EEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccHHH
Q 042534 85 IVTCGGLCP-GLNTVIRELVVGLWELYGVRQI-LGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQ 162 (447)
Q Consensus 85 IvtsGG~~P-GlN~vIr~vv~~~~~~~~~~~V-~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~ 162 (447)
++.-|..-| ..|..+..+.+.+.+..+...+ +|+.+. ..+++++
T Consensus 4 lv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~----------------------------------~~P~i~~ 49 (101)
T cd03409 4 VVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG----------------------------------LGPDTEE 49 (101)
T ss_pred EEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC----------------------------------CCCCHHH
Confidence 445677777 8999999999888654431111 122111 2356889
Q ss_pred HHHHHHHcCCCEEEEe
Q 042534 163 IVDAIQTNAFNQVYII 178 (447)
Q Consensus 163 iv~~l~~~~Id~L~vI 178 (447)
+++.|++.|++-++++
T Consensus 50 ~l~~l~~~g~~~vvvv 65 (101)
T cd03409 50 AIRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 9999999998887664
No 357
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.61 E-value=6e+02 Score=26.01 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=57.4
Q ss_pred EEEEecCCCcHHH-HHHHHHHHHHcCCcceEeeeccccccccc---CcCc-cc---Chhh-----HHHHHHHHHH---HH
Q 042534 174 QVYIIGGDGTMRG-AVEIFDEIQRRKINVGVVGIPKTVDNDVG---IIDR-SF---GFQT-----AVEMAQQAIS---AA 237 (447)
Q Consensus 174 ~L~vIGGdgS~~~-A~~L~~~~~~~~~~i~VVgIPkTIDNDi~---~tD~-s~---GFdT-----Av~~~~~ai~---~i 237 (447)
.+++-||-|-+-. |.+|+++++++|.++.++|-++-++.++. +.++ ++ |+.- -+......+. .+
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5677777777655 78899999988999999998888887762 2221 22 3321 1111111111 11
Q ss_pred HHhhhhcCCcEEEEEecCCccchHHHHHhhccCCc
Q 042534 238 HVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDV 272 (447)
Q Consensus 238 ~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~a 272 (447)
..-.+. .+--+|=.+|-.++.-++.+|...+-+
T Consensus 84 ~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p 116 (352)
T PRK12446 84 YVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVP 116 (352)
T ss_pred HHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCC
Confidence 111112 123356668988887788888777733
No 358
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=21.60 E-value=1.2e+02 Score=30.55 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=25.0
Q ss_pred hhhhcCCcEEEEEecCC-ccchHHHHHhhccCCccEEe
Q 042534 240 EAESAVNGIGLVKLMGR-STGHIALHATLSSRDVDCCL 276 (447)
Q Consensus 240 ~A~S~~~~v~iVevMGR-~sG~lAl~aaLA~~~ad~il 276 (447)
..+...++|++|=+||- |.||++|--.-.. .+|.++
T Consensus 16 ~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~-~~d~VV 52 (285)
T COG0414 16 ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKK-ENDVVV 52 (285)
T ss_pred HHHHcCCEEEEEcCCcccchHHHHHHHHHhh-cCCeEE
Confidence 34444678999999996 8899998544333 356544
No 359
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=21.59 E-value=4.3e+02 Score=28.25 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=66.5
Q ss_pred ceEEEEccCCCCccHHHH-HHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc--
Q 042534 81 TRAAIVTCGGLCPGLNTV-IRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-- 157 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~v-Ir~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-- 157 (447)
.+..||.+=|.+-|-+.. ||++|..+. +.|+ ++.-+ +. +..||+-|-|.|.-
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~-~~G~-r~VVf---------N~--------------RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQ-RKGY-RVVVF---------NH--------------RGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHH-hCCc-EEEEE---------CC--------------CCCCCCccCCCceeec
Confidence 334555555566555554 899998885 4454 23221 11 33567778788842
Q ss_pred ---ccHHHHHHHHHHcCCCE-EEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccc
Q 042534 158 ---FDLHQIVDAIQTNAFNQ-VYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDN 212 (447)
Q Consensus 158 ---~~~~~iv~~l~~~~Id~-L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDN 212 (447)
.|++++++.+++.-=++ |+.+| .--||+.|.+++.+.|-+.++++- .+|+|
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~~a-~~v~~ 233 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLIAA-VAVCN 233 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCceeE-EEEec
Confidence 58999999999888777 77775 445667788888877766655543 44544
No 360
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.55 E-value=2e+02 Score=27.56 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++=|...=-+++..+|+.. ++++++=|..-.+|. ...+.+.|++..++.+..||+++-
T Consensus 131 ~LS~G~~qrl~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 131 NLSGGEAQRVSIARTLANN-PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4445555568889999986 999888665444542 234445555433334677887764
No 361
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.53 E-value=6.7e+02 Score=23.39 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHV 239 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~ 239 (447)
..+.++.+...++|++++...+.+-. . .+.+.++ +++||.+=.+.+.... -.++++|- .+.+..+.+.+..
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~~--~ipvV~i~~~~~~~~~--~~~v~~d~-~~~~~~a~~~l~~ 114 (270)
T cd06296 44 ERQWVERLSARRTDGVILVTPELTSA---Q-RAALRRT--GIPFVVVDPAGDPDAD--VPSVGATN-WAGGLAATEHLLE 114 (270)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChH---H-HHHHhcC--CCCEEEEecccCCCCC--CCEEEeCc-HHHHHHHHHHHHH
Confidence 45778889999999999988764422 1 2334333 5677765333321111 13455554 1223333333332
Q ss_pred hhhhcCCcEEEEE
Q 042534 240 EAESAVNGIGLVK 252 (447)
Q Consensus 240 ~A~S~~~~v~iVe 252 (447)
. . ++++.++-
T Consensus 115 ~--g-~~~i~~i~ 124 (270)
T cd06296 115 L--G-HRRIGFIT 124 (270)
T ss_pred c--C-CCcEEEEc
Confidence 2 3 45677763
No 362
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=21.50 E-value=8.4e+02 Score=24.51 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCEEEEe----cCCCcHHHHHHHHHHHHHcC-CcceEeeeccc
Q 042534 160 LHQIVDAIQTNAFNQVYII----GGDGTMRGAVEIFDEIQRRK-INVGVVGIPKT 209 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vI----GGdgS~~~A~~L~~~~~~~~-~~i~VVgIPkT 209 (447)
.++|.+.|+. -|.+|++ ||-||=. +-.+++.+++.+ ..+.|+-.|..
T Consensus 75 ~~~I~~~l~~--~d~v~i~aglGGGTGSG~-ap~ia~~a~e~g~~~~~vvt~Pf~ 126 (304)
T cd02201 75 REEIKEALEG--ADMVFITAGMGGGTGTGA-APVIAKIAKEMGALTVAVVTKPFS 126 (304)
T ss_pred HHHHHHHHhC--CCEEEEeeccCCCcchhH-HHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5667777764 7778777 4555544 333666666665 33455545543
No 363
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=21.49 E-value=2e+02 Score=26.79 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=36.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++=|...=.+++..+|+.. ++++++=|.--.+| ....+.+.|++ +++++..||+++
T Consensus 137 ~LS~G~~qrl~la~al~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~tii~~t 194 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVNS-PPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVAT 194 (214)
T ss_pred hCCHHHHHHHHHHHHHhCC-CCEEEEeCCcccCCHHHHHHHHHHHHH-HHHcCCEEEEEe
Confidence 4555556678999999997 99999866443444 33345555554 333466777775
No 364
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.47 E-value=2.5e+02 Score=29.75 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
++++.+..|-+.++|.++||||--|-.+ .+|++-+++.+.+.-.|-=+.=||-+
T Consensus 276 ~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 276 ERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 4677888887778999999999988766 45888888877666666666666653
No 365
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=21.40 E-value=1.8e+02 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=35.3
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|.--.+|- ...+.+.|++..++.+.+||+++-
T Consensus 150 LS~G~~qrv~laral~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 150 LAPGQKQRLGLARALILR-PKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred cCHHHHHHHHHHHHHHhC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 334444457888888886 999998775444542 234455555443445778887764
No 366
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.30 E-value=5.5e+02 Score=22.96 Aligned_cols=86 Identities=10% Similarity=0.208 Sum_probs=50.5
Q ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECCh-hhhhchhccCCcccc-ccCCc-
Q 042534 81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNP-KMVRGWHKLGGTVLE-TSRGG- 157 (447)
Q Consensus 81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~-~~v~~i~~~GGt~LG-ssR~~- 157 (447)
.+|-+-|.|||.=-+..- ++..+.+.+|+ +|+= .|. ..++ +.++.....+--++| |+...
T Consensus 2 ~~vvigtv~~D~HdiGk~---iv~~~l~~~Gf-eVi~-----LG~--------~v~~e~~v~aa~~~~adiVglS~l~~~ 64 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNK---ILDHAFTNAGF-NVVN-----LGV--------LSPQEEFIKAAIETKADAILVSSLYGH 64 (134)
T ss_pred CeEEEEEecCChhhHhHH---HHHHHHHHCCC-EEEE-----CCC--------CCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 357777888887666654 44444456675 4441 111 1233 344444444444444 23322
Q ss_pred --ccHHHHHHHHHHcCC-CEEEEecCCCc
Q 042534 158 --FDLHQIVDAIQTNAF-NQVYIIGGDGT 183 (447)
Q Consensus 158 --~~~~~iv~~l~~~~I-d~L~vIGGdgS 183 (447)
..++++++.|++.++ +..+++||.-.
T Consensus 65 ~~~~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 65 GEIDCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 357889999999999 56677999754
No 367
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=21.28 E-value=2.1e+02 Score=26.89 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=36.5
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|-..=-+++..+|+.. +++++.=|.--.+| ....+.+.+++..+.++.+||+++-
T Consensus 141 ~lS~G~~qrv~laral~~~-p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh 200 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVHR-PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200 (220)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3333344457778888886 89999877544444 3345566666554446778887753
No 368
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.22 E-value=1.2e+02 Score=28.21 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=31.7
Q ss_pred HHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhH
Q 042534 165 DAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTA 226 (447)
Q Consensus 165 ~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTA 226 (447)
+.+++++.|++|+-||=|+-..+....+.+++...++++.|| |+|++.-
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI-------------ClG~Q~l 85 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV-------------CLGHQAM 85 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE-------------CHHHHHH
Confidence 345567899999999999976653332323222234566665 8998753
No 369
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=21.20 E-value=1.4e+02 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.4
Q ss_pred EEEecCCCcHHH--HHHHHHHHHHcCCcceEeeeccc
Q 042534 175 VYIIGGDGTMRG--AVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 175 L~vIGGdgS~~~--A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
+++.|.|||=++ +..|++.+.++|.++.++.-|.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~ 39 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGG 39 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 678899999666 57899998888888777766764
No 370
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.06 E-value=8.3e+02 Score=24.31 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
-+.+.||++...-.-|-.+.++.++.+.+. .+|...++ +.++...
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~-~~g~~~~~----------------------------------~~~~~~~ 66 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAK-AAPDVQLL----------------------------------MNDSQND 66 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHH-hcCCeEEE----------------------------------EecCCCC
Confidence 345778988866667888888888888774 33311111 1112211
Q ss_pred c-cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 158 F-DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 158 ~-~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
. ...+.++.|...++|++++.+.+..... ..+ +++++. +|+||.+=.
T Consensus 67 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~--giPvV~vd~ 114 (330)
T PRK15395 67 QSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQ--DVPVVFFNK 114 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHC--CCcEEEEcC
Confidence 2 2345778899999999999987754332 223 334444 455665533
No 371
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=21.00 E-value=79 Score=28.02 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=6.2
Q ss_pred EEEEecCCCcHH
Q 042534 174 QVYIIGGDGTMR 185 (447)
Q Consensus 174 ~L~vIGGdgS~~ 185 (447)
-.+++-|||++.
T Consensus 66 ~vv~~~GDG~~~ 77 (168)
T cd00568 66 PVVCIAGDGGFM 77 (168)
T ss_pred cEEEEEcCcHHh
Confidence 345555555544
No 372
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.97 E-value=2e+02 Score=26.66 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=34.9
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEe
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVA 309 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvva 309 (447)
++-|...=-+++..+|+.. ++++++=|.--.+| ....+.+.|++. .+++.+||+++
T Consensus 134 ~LSgG~~qrv~laral~~~-p~llllDEPt~~LD~~~~~~~~~~l~~~-~~~~~tvi~~s 191 (211)
T cd03225 134 TLSGGQKQRVAIAGVLAMD-PDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVT 191 (211)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHH-HHcCCEEEEEe
Confidence 4445455567888899986 99988866433444 233455555543 33467777775
No 373
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=20.93 E-value=51 Score=30.32 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGII 217 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~t 217 (447)
+++++++.++.. .+-++||||-.-++.+..+++ .+-+--|+++.+-|..+.
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP 129 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFP 129 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECS
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECC
Confidence 478888855555 899999999988887776544 567778889999998654
No 374
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=20.93 E-value=2e+02 Score=28.11 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=36.8
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|.--.|| ....+.+.|++..+.++.+||+++-
T Consensus 143 ~LSgGq~qrv~laral~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 143 ELSGGMARRAALARAIALE-PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 4445455568889999986 99999866443444 2334555555443444678888764
No 375
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.78 E-value=7.1e+02 Score=23.42 Aligned_cols=46 Identities=9% Similarity=0.108 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecc
Q 042534 159 DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPK 208 (447)
Q Consensus 159 ~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPk 208 (447)
...++++.+...++|++++.+.|.+. ....+ +.+.++ +|+||.+-.
T Consensus 48 ~~~~~~~~l~~~~vDgiii~~~~~~~-~~~~i-~~~~~~--gIpvV~~d~ 93 (274)
T cd06311 48 QQNAQQDLLINRKIDALVILPFESAP-LTQPV-AKAKKA--GIFVVVVDR 93 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchh-hHHHH-HHHHHC--CCeEEEEcC
Confidence 35678888999999999999876432 11222 333333 567777543
No 376
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=20.74 E-value=2.1e+02 Score=27.30 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=36.4
Q ss_pred ecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 253 LMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 253 vMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
+-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.+++..++.+.+||+++-
T Consensus 131 lS~G~~qrl~laral~~~-p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH 189 (237)
T TIGR00968 131 LSGGQRQRVALARALAVE-PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189 (237)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 334445568888999987 99999977544444 3345555565433333677887764
No 377
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.73 E-value=2.9e+02 Score=27.46 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCEEEEec-----CCCcHHHHHHHHHHHHHcCCcceEeeeccccccccc
Q 042534 162 QIVDAIQTNAFNQVYIIG-----GDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVG 215 (447)
Q Consensus 162 ~iv~~l~~~~Id~L~vIG-----GdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~ 215 (447)
+.++..-.+|.|-.+.|- |-+++.+|..|++.+++.++.+-+.|- .|+|.|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 556666688999888884 558999999999999988888777774 66666554
No 378
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=20.65 E-value=4.9e+02 Score=24.05 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCC
Q 042534 77 EPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRG 156 (447)
Q Consensus 77 ~p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~ 156 (447)
.|.....+|+++|++..|=-.+++.+...+. ..+ ++.++.+.+...+-.-=.++.....
T Consensus 10 ~~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~-------------------~~~--~v~i~~D~~r~~~p~~~~~~~~~~~ 68 (199)
T PF06414_consen 10 PPQEKPTLIIIAGQPGSGKSTLARQLLEEFG-------------------GGG--IVVIDADEFRQFHPDYDELLKADPD 68 (199)
T ss_dssp ---SS-EEEEEES-TTSTTHHHHHHHHHHT--------------------TT---SEEE-GGGGGGGSTTHHHHHHHHCC
T ss_pred CcccCCEEEEEeCCCCCCHHHHHHHhhhhcc-------------------CCC--eEEEehHHHHHhccchhhhhhhhhh
Confidence 3556779999999999999777776654321 122 4555555554444110001110000
Q ss_pred c----------ccHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeee
Q 042534 157 G----------FDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGI 206 (447)
Q Consensus 157 ~----------~~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgI 206 (447)
. .-.+++.+.+.+.+.+.++ =|--.+......+.+.+++.|+.+.++.|
T Consensus 69 ~~~~~~~~~a~~~~~~~~~~a~~~~~nii~-E~tl~~~~~~~~~~~~~k~~GY~v~l~~v 127 (199)
T PF06414_consen 69 EASELTQKEASRLAEKLIEYAIENRYNIIF-EGTLSNPSKLRKLIREAKAAGYKVELYYV 127 (199)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHCT--EEE-E--TTSSHHHHHHHHHHHCTT-EEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCEEE-ecCCCChhHHHHHHHHHHcCCceEEEEEE
Confidence 0 1147788888889998666 22222333445567888888988877766
No 379
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.63 E-value=98 Score=28.08 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCcceEeeeccccccc
Q 042534 185 RGAVEIFDEIQRRKINVGVVGIPKTVDND 213 (447)
Q Consensus 185 ~~A~~L~~~~~~~~~~i~VVgIPkTIDND 213 (447)
..+..|.+.++++....-|||.|+++|+-
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~ 68 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGT 68 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCC
Confidence 45667777777888888899999997643
No 380
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.55 E-value=2e+02 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=37.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+|- ...+.+.+++..++++.+||+++-
T Consensus 142 ~LS~G~~qrl~laral~~~-p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH 201 (269)
T PRK13648 142 ALSGGQKQRVAIAGVLALN-PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201 (269)
T ss_pred cCCHHHHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4445555568889999997 999999775444542 334555555433344677877764
No 381
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=20.48 E-value=2.2e+02 Score=29.75 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHH
Q 042534 160 LHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQ 232 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ 232 (447)
.+.|.+..++++-+.++|+++--|..-...+...+++...+++||.|+-+ +-. -+++-|+..|++.+.+
T Consensus 64 ~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIeaVvkE~~~giPVI~V~t~--GGf--Gdn~~G~~~aLeAiid 132 (352)
T TIGR03282 64 VKVIRYAEEKFKPELIGVVGTCASMIIGEDLKEAVDEADVDAEVIAVEVH--AGF--GDNTEGVIATLESAAE 132 (352)
T ss_pred HHHHHHHHHhcCCCEEEEECCCchhhccCCHHHHHHHhCCCCCEEEEECC--CCC--ccHHHHHHHHHHHHHH
Confidence 35666677888999999999988877666665555555677888877531 112 4788999999988866
No 382
>PLN02161 beta-amylase
Probab=20.47 E-value=6.3e+02 Score=27.88 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCCEEEE------ec--CCCc--HHHHHHHHHHHHHcCCcceEe----------------eecccc---
Q 042534 160 LHQIVDAIQTNAFNQVYI------IG--GDGT--MRGAVEIFDEIQRRKINVGVV----------------GIPKTV--- 210 (447)
Q Consensus 160 ~~~iv~~l~~~~Id~L~v------IG--GdgS--~~~A~~L~~~~~~~~~~i~VV----------------gIPkTI--- 210 (447)
++.=++.||..|+|++.+ += |.+- -.+-.+|++.+++.|+++.+| -+|+-+
T Consensus 119 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~ 198 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREI 198 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhh
Confidence 567788899999999864 22 3333 456678999999999988775 256554
Q ss_pred ---cccccCcCc---------ccChh--------hHHHHHHHHHHHHHHhhhhcC-CcEEEEEec
Q 042534 211 ---DNDVGIIDR---------SFGFQ--------TAVEMAQQAISAAHVEAESAV-NGIGLVKLM 254 (447)
Q Consensus 211 ---DNDi~~tD~---------s~GFd--------TAv~~~~~ai~~i~~~A~S~~-~~v~iVevM 254 (447)
|.||.+||+ |+|.| |+++...+...+.+.+-...- .-|.=|++=
T Consensus 199 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~VG 263 (531)
T PLN02161 199 GDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEISIG 263 (531)
T ss_pred hccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEec
Confidence 449999985 88888 789999999999988876632 234444443
No 383
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.45 E-value=5e+02 Score=27.70 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=29.0
Q ss_pred CCEEEEecCCCcHHHHHHHHHHHHHc---CCcceEe-eecccccccc
Q 042534 172 FNQVYIIGGDGTMRGAVEIFDEIQRR---KINVGVV-GIPKTVDNDV 214 (447)
Q Consensus 172 Id~L~vIGGdgS~~~A~~L~~~~~~~---~~~i~VV-gIPkTIDNDi 214 (447)
+|.++++=|-||...-..+.+|.-.+ .+++||| ||=--+|.=|
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti 234 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDFTI 234 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccH
Confidence 89999999999998877665553332 3566665 4555554433
No 384
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=20.35 E-value=2e+02 Score=28.00 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=-+++..+|+.. ++++++=|..-.+| ....+.+.|++..+.++.+||+++.
T Consensus 143 ~LS~Gq~qrv~laral~~~-p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 143 TLSGGQRQRAWIAMVLAQE-TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred cCChHHHHHHHHHHHHhcC-CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4445555567888999987 99999866433343 3334555565433344677887763
No 385
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.34 E-value=7.2e+02 Score=23.30 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=53.5
Q ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc-ccH
Q 042534 82 RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG-FDL 160 (447)
Q Consensus 82 kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~-~~~ 160 (447)
|||++...-.-|....+++++-+.+. .++ ..||. -+ + ++..+... ...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~-~~~-------~~g~~----~~--l-----------------~i~~~~~~~~~~ 49 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAK-ELK-------KAGLI----SE--F-----------------IVTSADGDVAQQ 49 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHH-hhh-------ccCCe----eE--E-----------------EEecCCCCHHHH
Confidence 68888877777888888888888774 341 01110 00 1 11122222 224
Q ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeeccc
Q 042534 161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKT 209 (447)
Q Consensus 161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkT 209 (447)
.+.++.+...++|++++...+... .....+.+.++ +++||.+-..
T Consensus 50 ~~~~~~~~~~~vdgiIi~~~~~~~--~~~~l~~~~~~--~iPvv~~~~~ 94 (272)
T cd06300 50 IADIRNLIAQGVDAIIINPASPTA--LNPVIEEACEA--GIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHcCCCEEEEeCCChhh--hHHHHHHHHHC--CCeEEEEecC
Confidence 567777888899999999876321 11122333333 5778877443
No 386
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=20.19 E-value=1.9e+02 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHcCCCEEEEecCCCcHHH---HHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHH
Q 042534 167 IQTNAFNQVYIIGGDGTMRG---AVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMA 230 (447)
Q Consensus 167 l~~~~Id~L~vIGGdgS~~~---A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~ 230 (447)
+...++|++++-||.++... ..++.+++.++ +++|.|| |.|++......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~--~~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGK--KIPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhC--CCCEEEE-------------CHHHHHHHHHc
Confidence 34568999999999876433 23344444443 3566665 88888654443
No 387
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.18 E-value=2.1e+02 Score=26.30 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=36.0
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcc--hhhhHHHHHHHHHhhCCcEEEEEec
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLE--GKGGLVEFLDNRLKENGHAVLVVAE 310 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le--~~~~l~~~i~~r~~~k~~~vIvvaE 310 (447)
++-|...=.+++..+|+.+ ++++++=|..-.+| ....+.+.+++ ...++.+||+++-
T Consensus 123 ~LS~G~~~rl~la~al~~~-p~~lllDEP~~~LD~~~~~~l~~~l~~-~~~~~~tiii~sh 181 (195)
T PRK13541 123 SLSSGMQKIVAIARLIACQ-SDLWLLDEVETNLSKENRDLLNNLIVM-KANSGGIVLLSSH 181 (195)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHH-HHhCCCEEEEEeC
Confidence 3455556678899999997 99999876543444 23344445543 2345677777764
No 388
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.16 E-value=1.2e+02 Score=29.33 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=25.6
Q ss_pred HHHcCCCEEEEecCCCcH----------------HHHHHHHHHHHHcCCcceEe
Q 042534 167 IQTNAFNQVYIIGGDGTM----------------RGAVEIFDEIQRRKINVGVV 204 (447)
Q Consensus 167 l~~~~Id~L~vIGGdgS~----------------~~A~~L~~~~~~~~~~i~VV 204 (447)
+.....|+||+-||.|.+ ..+.+|.+.+.+.|..|..|
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAI 134 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFI 134 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEE
Confidence 344578999999999863 34666667776666444333
No 389
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.07 E-value=2.1e+02 Score=27.69 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=37.8
Q ss_pred EecCCccchHHHHHhhccCCccEEecCCCCCCcch--hhhHHHHHHHHHhhCCcEEEEEecC
Q 042534 252 KLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEG--KGGLVEFLDNRLKENGHAVLVVAEG 311 (447)
Q Consensus 252 evMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~--~~~l~~~i~~r~~~k~~~vIvvaEG 311 (447)
++=|...=-+++..+|+.. ++++++=|.--.+|. ...+.+.|++..++++.+||+++.-
T Consensus 151 ~LS~Gq~qrl~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTH-PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4445555668888999986 999998775445543 2344555554334446778877643
No 390
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.04 E-value=5.3e+02 Score=27.06 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCCceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCc
Q 042534 78 PKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGG 157 (447)
Q Consensus 78 p~~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~ 157 (447)
++++||.+..|||. -+ +++..+...-| .+|+|+. +.+-.+ .++ +.|...
T Consensus 1 ~~~~kV~v~mSGGV----DS---SVaA~lLk~QG-yeViGl~-------------m~~~~~-------~~~---~~C~s~ 49 (356)
T COG0482 1 MKKKKVLVGMSGGV----DS---SVAAYLLKEQG-YEVIGLF-------------MKNWDE-------DGG---GGCCSE 49 (356)
T ss_pred CCCcEEEEEccCCH----HH---HHHHHHHHHcC-CeEEEEE-------------EEeecc-------CCC---CcCCch
Confidence 46789999999984 33 33334444444 5999974 221111 111 123344
Q ss_pred ccHHHHHHHHHHcCCCEEEE
Q 042534 158 FDLHQIVDAIQTNAFNQVYI 177 (447)
Q Consensus 158 ~~~~~iv~~l~~~~Id~L~v 177 (447)
.|+..+...++++||...++
T Consensus 50 ~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 50 EDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred hHHHHHHHHHHHhCCceEEE
Confidence 68888999999999998776
Done!